ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactI2576 check: MH A KOG0952 RNA processing and modification DNA/RNA helicase MER3/SLH1, DEAD-box superfamily
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactI2576 865422 871301 1960
(1960 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YGR271w [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily 2762 0.0
SPBC13G1.10c [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box sup... 1666 0.0
Hs14747366 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box super... 1490 0.0
7300033 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily 1409 0.0
At5g61140 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superf... 1347 0.0
CE20305 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily 1308 0.0
Hs22042312 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily 1212 0.0
At1g20960 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily 1172 0.0
At2g42270 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily 1145 0.0
CE21971 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily 1093 0.0
SPAC9.03c [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily 1039 0.0
YER172c [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily 916 0.0
ECU07g0830 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box super... 404 e-111
ECU06g0920 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily 285 7e-76
YGL251c [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily 262 5e-69
Hs18548973 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box super... 244 1e-63
CE24303 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily 219 3e-56
7294212 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily 203 2e-51
At3g27730 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superf... 201 1e-50
7299675 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfamily 126 4e-28
Hs16418479 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfa... 114 1e-24
At1g59760 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-bo... 114 2e-24
SPAC6F12.16c [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD... 105 6e-22
CE27019 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfamily 104 2e-21
At2g06990 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-bo... 104 2e-21
CE07565 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfamily 103 2e-21
ECU04g1290 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DE... 102 8e-21
Hs14721269 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-b... 101 1e-20
ECU04g0910 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-b... 101 1e-20
At4g32700 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfamily 100 2e-20
Hs19525733 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfa... 100 3e-20
SPAC17H9.02 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-... 100 4e-20
7295156 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfamily 99 7e-20
Hs20631987 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DE... 96 7e-19
SPCC550.03c [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 D... 93 4e-18
7298249 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box ... 90 4e-17
YJL050w [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box ... 88 2e-16
CE06562 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box ... 86 6e-16
YLR398c [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-... 81 2e-14
CE20651 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-... 73 5e-12
At1g70070 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEA... 73 5e-12
At3g46960 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEA... 71 2e-11
ECU05g0940 [R] KOG0949 Predicted helicase DEAD-box superfamily 60 5e-08
CE29195 [R] KOG0949 Predicted helicase DEAD-box superfamily 60 5e-08
SPAC694.02 [R] KOG0949 Predicted helicase DEAD-box superfamily 57 2e-07
7301051 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-... 57 2e-07
7300752 [R] KOG0354 DEAD-box like helicase 56 7e-07
At1g35530 [R] KOG0354 DEAD-box like helicase 53 4e-06
>YGR271w [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily
Length = 1967
Score = 2762 bits (7160), Expect = 0.0
Identities = 1364/1975 (69%), Positives = 1632/1975 (82%), Gaps = 25/1975 (1%)
Query: 1 MSTTYSVHSVGSYMKAMEVMVSAAQAFPHLDTSTI--PKVDEELKKGTKRSDN-RNKLLV 57
MST YS S S+M AM+ M+ +Q F +LD S I P D+ELKK K N R +L V
Sbjct: 1 MSTEYSADSSKSFMIAMQSMIDTSQTF-NLDRSKISLPDFDDELKKVQKDEPNQRTELTV 59
Query: 58 TSQDRNEWDDIFEEFANLSSDNLQSLITSNHSASNAQAQVYKELFRLLDNVDSDFPRDQL 117
SQDRN+WDDIFEEF ++S LQS+I S + NA A VYK++ +L++ ++ + L
Sbjct: 60 LSQDRNDWDDIFEEFKDISFAQLQSIIDS-YKTKNAVA-VYKKIGKLINEAETTLSSNVL 117
Query: 118 LQQLIELLRNNENTGTADQDLFDYLGAENIELISFLIENQEILKHTPIEH---MSNSDTY 174
L+ +++++ ++ +++L D+LG NI+L+S L++++ ++ TPIE + +
Sbjct: 118 LETVLQMVYKHQKQ-ELEKELLDFLGTGNIDLVSLLLQHRRMIVATPIETTILLIKNAVN 176
Query: 175 EGNRFMTEEDMRRQVLKNREKGKNAKLATAQRKVKYPHVFRQSEDAGSSMLSFAGQKFAL 234
F+T++D+R QVL++ E KN KL A + +KYPHVFR+ E ++ ++FAGQKF L
Sbjct: 177 STPEFLTQQDIRNQVLESAEDAKNRKLNPATKIIKYPHVFRKYEAGSTTAMAFAGQKFTL 236
Query: 235 PAGSMRYTFQTHEEITIPCAVP---KRKFDIPLVKVSDLDEYCRKVFEYDYLNKVQSLVY 291
P G+ R ++ THEEI IP A K L+K+SDLD +C+ VF Y+ LN++QSLVY
Sbjct: 237 PVGTTRMSYNTHEEIIIPAADQASNKNYLYTKLLKISDLDHFCKTVFPYETLNQIQSLVY 296
Query: 292 PVAYNTNGNMLICAPTGAGKTDIALLTILNTIKQFSVINEEGGFDIEYDDFKIIYVAPLK 351
PVAY TN NMLICAPTGAGKTDIALLTI+NTIKQFSV+N E DI+YDDFK+IYVAPLK
Sbjct: 297 PVAYKTNENMLICAPTGAGKTDIALLTIINTIKQFSVVNGENEIDIQYDDFKVIYVAPLK 356
Query: 352 ALAAEITDKFARKLSVFDVKVRELTGDMQLTKREILETQVIVTTPEKWDVVTRKASGDND 411
ALAAEI DKF++KL+ F+++VRELTGDMQLTK EIL TQVIVTTPEKWDVVTRKA+GDND
Sbjct: 357 ALAAEIVDKFSKKLAPFNIQVRELTGDMQLTKAEILATQVIVTTPEKWDVVTRKANGDND 416
Query: 412 LTSKVKLLILDEVHLLHEDRGSVIESLVARTLRQVESSQTMIRILGLSATLPNFVDVADF 471
L SKVKLLI+DEVHLLHEDRG VIE+LVARTLRQVESSQ+MIRI+GLSATLPNF+DVADF
Sbjct: 417 LVSKVKLLIIDEVHLLHEDRGPVIETLVARTLRQVESSQSMIRIIGLSATLPNFMDVADF 476
Query: 472 LGVNRNVGMFYFDQSFRPKALEQHLIGCRGKAGSKQCRENTDKVAYEKAVEMMKLGNQVM 531
LGVNR +GMFYFDQSFRPK LEQ L+GCRGKAGS+Q +EN DKVAY+K EM++ G QVM
Sbjct: 477 LGVNRQIGMFYFDQSFRPKPLEQQLLGCRGKAGSRQSKENIDKVAYDKLSEMIQRGYQVM 536
Query: 532 IFVHSRKDTVKTARTLISMARDNYEMDLFTSNDASVTIFQKELSKHKDKDLKELFQSGFG 591
+FVHSRK+TVK+AR I +A N+E+DLF + + + L K++DKD+KE+FQ GFG
Sbjct: 537 VFVHSRKETVKSARNFIKLAESNHEVDLFAPDPIEKDKYSRSLVKNRDKDMKEIFQFGFG 596
Query: 592 VHHAGMSRSDRNITEKMFKSGAVNVLVCTATLAWGVNLPADCVIIKGTQVYDSKKGGYTD 651
+HHAGM+RSDRN+TEKMFK GA+ VL CTATLAWGVNLPADCVIIKGTQVYDSKKGG+ D
Sbjct: 597 IHHAGMARSDRNLTEKMFKDGAIKVLCCTATLAWGVNLPADCVIIKGTQVYDSKKGGFID 656
Query: 652 LGISDVIQIFGRAGRPGFGSDYGTAYLCTSNDRLDHYVDLITQQHPIESRLGAKVVDNLN 711
LGISDVIQIFGR GRPGFGS GT LCTSNDRLDHYV LITQQHPIESR G+K+VDNLN
Sbjct: 657 LGISDVIQIFGRGGRPGFGSANGTGILCTSNDRLDHYVSLITQQHPIESRFGSKLVDNLN 716
Query: 712 AEISLGTVTNVEEGVKWLGYTYMFVRMKQNPFTYGIDWEEIRNDPQLYEKRRQIIITAAR 771
AEISLG+VTNV+E ++WLGYTYMFVRM++NPFTYGIDWEEI NDPQLYE+RR++I+ AAR
Sbjct: 717 AEISLGSVTNVDEAIEWLGYTYMFVRMRKNPFTYGIDWEEIANDPQLYERRRKMIVVAAR 776
Query: 772 RLHSLQMIVFDEVSMHFIPKDLGRIASEFYLLNESVEIFNQVANPRATEADVLAMISMSS 831
RLH+LQMIVFDEVSMHFI KDLGR++S+FYLLNESVEIFNQ+ +PRATEADVL+MISMSS
Sbjct: 777 RLHALQMIVFDEVSMHFIAKDLGRVSSDFYLLNESVEIFNQMCDPRATEADVLSMISMSS 836
Query: 832 EFDSIKFREEESNELNKLLDCAVECQISGDVDSSPGKTNILLQAYVSQSRINDSALNSDA 891
EFD IKFREEES EL +L D +VECQI +D+ GK N+LLQAY+SQ+RI DSAL+SD+
Sbjct: 837 EFDGIKFREEESKELKRLSDESVECQIGSQLDTPQGKANVLLQAYISQTRIFDSALSSDS 896
Query: 892 NYIAQNSARICRALLLIGINRRWGTFSKVMLDICKSIEKRMWAFDHPLCQFDLPDTILRN 951
NY+AQNS RICRAL LIG+NRRWG FS VML+ICKSIEKR+WAFDHPLCQFDLP+ I+R
Sbjct: 897 NYVAQNSVRICRALFLIGVNRRWGKFSNVMLNICKSIEKRLWAFDHPLCQFDLPENIIRR 956
Query: 952 IKAKNPSXXXXXXXXXXXXXXXVHNQKMGGKLYRIISRFPRVDIDAEIFPITTNVMRVHI 1011
I+ PS VHN+K G +LY+I+SRFP+++I+AEIFPITTNVMR+HI
Sbjct: 957 IRDTKPSMEHLLELEADELGELVHNKKAGSRLYKILSRFPKINIEAEIFPITTNVMRIHI 1016
Query: 1012 SLLPNFEWDYHVHGDAQFFWVFVEESNQSSILHFEKFILNKRQLSNPHEMDFMIPLSDPL 1071
+L P+F WD +HGDAQFFWVFVEES++S ILHFEKFILN+RQL+N HEMDFMIPLSDPL
Sbjct: 1017 ALGPDFVWDSRIHGDAQFFWVFVEESDKSQILHFEKFILNRRQLNNQHEMDFMIPLSDPL 1076
Query: 1072 PPQVIVKVVSDTWIGCESAHTISFQHLIRPHNETLQTRLQKLNPLPTSALKNPLVESIYP 1131
PPQV+VKVVSDTWIGCES H ISFQHLIRP NETLQT+L KL PLPTSAL+NPL+ESIYP
Sbjct: 1077 PPQVVVKVVSDTWIGCESTHAISFQHLIRPFNETLQTKLLKLRPLPTSALQNPLIESIYP 1136
Query: 1132 FKYFNPMQTMVFHTLYHSNVSTFVGSPTGSGKTVVAELAIWHAFRDYPGSKVVYIAPMKA 1191
FKYFNPMQTM F+TLY++N + FVGSPTGSGKT+VAELAIWHAF+ +PG K+VYIAPMKA
Sbjct: 1137 FKYFNPMQTMTFYTLYNTNENAFVGSPTGSGKTIVAELAIWHAFKTFPGKKIVYIAPMKA 1196
Query: 1192 LVRERVNDWRKRITPVTGDRIVELTGDSVPDPQDIKDATIVITTPEKFDGISRNWQTRKF 1251
LVRERV+DWRK+ITPVTGD++VELTGDS+PDP+D+ DATIVITTPEKFDGISRNWQTRKF
Sbjct: 1197 LVRERVDDWRKKITPVTGDKVVELTGDSLPDPKDVHDATIVITTPEKFDGISRNWQTRKF 1256
Query: 1252 VQNVSLIIMDEIHLLASDRGPILEMIVSRMNYVSSQTKKPIRLLGMSTAVSNAFDMASWL 1311
VQ+VSLIIMDEIHLLASDRGPILEMIVSRMNY+SSQTK+P+RLLGMSTAVSNA+DMA WL
Sbjct: 1257 VQDVSLIIMDEIHLLASDRGPILEMIVSRMNYISSQTKQPVRLLGMSTAVSNAYDMAGWL 1316
Query: 1312 GVKGNGLYNFPSSVRPVPLKMYIDGFPDNLNFCPLMKTMNKPAFMAIKQHSPEKPVLLFV 1371
GVK +GLYNFPSSVRPVPLKMYIDGFPDNL FCPLMKTMNKP FMAIKQHSP+KP L+FV
Sbjct: 1317 GVKDHGLYNFPSSVRPVPLKMYIDGFPDNLAFCPLMKTMNKPVFMAIKQHSPDKPALIFV 1376
Query: 1372 ASRRQTRLTALDLIHLCGMEDNPRRFLHIDDEEELQYYISKVSDDTLKLSLQFGIGLHHA 1431
ASRRQTRLTALDLIHLCGMEDNPRRFL+IDDEEELQYY+S+V+DDTLKLSLQFGIGLHHA
Sbjct: 1377 ASRRQTRLTALDLIHLCGMEDNPRRFLNIDDEEELQYYLSQVTDDTLKLSLQFGIGLHHA 1436
Query: 1432 GLIESDRAISHELFLRSKIQILVATSTLAWGVNLPAHLVIIKGTQFFDAKIEGYRDMDLT 1491
GL++ DR+ISH+LF ++KIQIL+ATSTLAWGVNLPAHLVIIKGTQFFDAKIEGYRDMDLT
Sbjct: 1437 GLVQKDRSISHQLFQKNKIQILIATSTLAWGVNLPAHLVIIKGTQFFDAKIEGYRDMDLT 1496
Query: 1492 DILQMMGRAGRPAYDTSGTAIVYTKESKKMFYKHFLNVGFPVESSLHKVLDDHMGAEIAS 1551
DILQMMGRAGRPAYDT+GTAIVYTKESKKMFYKHFLNVGFPVESSLHKVLDDH+GAEI S
Sbjct: 1497 DILQMMGRAGRPAYDTTGTAIVYTKESKKMFYKHFLNVGFPVESSLHKVLDDHLGAEITS 1556
Query: 1552 GTISTKQEALDFLNWTFLFRRAHHNPTYYGINDDTSTSGINKYLSDLVNNTLDNLKESRC 1611
G+I+ KQEALDFL+WTFLFRRAHHNPTYYGI DDTST+G++++LS L+++TL+NL+ES+C
Sbjct: 1557 GSITNKQEALDFLSWTFLFRRAHHNPTYYGIEDDTSTAGVSEHLSSLIDSTLENLRESQC 1616
Query: 1612 VEIYGTNXXXXXXXXXXXXXXXXHKTIRSLLKQINSNASFQDVLKWLSLAVEYNELPVRN 1671
V ++G + H TIR LLKQI+ +A+FQ+VL+WLSLAVEYNELPVR
Sbjct: 1617 VLLHGDDIVATPFLSISSYYYISHLTIRQLLKQIHDHATFQEVLRWLSLAVEYNELPVRG 1676
Query: 1672 GEIIMNVEMSAQSRYSIESTFIDEFELPMWDPHVKAFLLLQAYLSRAELPIVDYHQDTIS 1731
GEIIMN EMS QSRYS+ESTF DEFELPMWDPHVK FLLLQA+LSR +LPI DY QDT+S
Sbjct: 1677 GEIIMNEEMSQQSRYSVESTFTDEFELPMWDPHVKTFLLLQAHLSRVDLPIADYIQDTVS 1736
Query: 1732 VLDQSLRILQAYVDVAAELGYFNTVMTLIKAMQCVKQGYWYEDDPISALPGAHLKRDDRI 1791
VLDQSLRILQAY+DVA+ELGYF+TV+T+IK MQC+KQGYWYEDDP+S LPG L+R
Sbjct: 1737 VLDQSLRILQAYIDVASELGYFHTVLTMIKMMQCIKQGYWYEDDPVSVLPGLQLRRIKDY 1796
Query: 1792 EFGDDGW----PLPDNGYKMSLDSLARLQDDNGAKNKVKNIMSRQYHVT--PDHQKRMLR 1845
F + G+ P ++L+ + R G K + + +T D +KR +
Sbjct: 1797 TFSEQGFIEMTPQQKKKKLLTLEEIGRF----GYKKLLNVFDQLTFGMTESEDTKKRFVS 1852
Query: 1846 EISRLPILDNIVFTSQTSNESLVLKATH-HNRVPKEFSVYCAKYPKTQRELWFAIAYQND 1904
RLP+L+ + F Q +NE L + H ++ F VYC K+PK Q+ELWF I ++ D
Sbjct: 1853 VCQRLPVLEGMKFEEQENNEVLTFYSKHLSSKHNNGFEVYCDKFPKIQKELWFLIGHKGD 1912
Query: 1905 ELIMLKRCQPRLGPNGKGLLSFDFVVPEDIRGKELDFVLVSDALDIKYHLKHKLM 1959
EL+M+KRCQP+ N + ++ D +PE+IRG+EL F L++DAL ++Y + HKL+
Sbjct: 1913 ELLMIKRCQPK-QMNKEVIIHCDLFIPEEIRGEELQFSLINDALGLRYDMVHKLI 1966
>SPBC13G1.10c [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily
Length = 1935
Score = 1666 bits (4314), Expect = 0.0
Identities = 885/1886 (46%), Positives = 1253/1886 (65%), Gaps = 89/1886 (4%)
Query: 117 LLQQLIELLRNNENTGTADQDLFDYLGAENIELISFLIENQEILKHTPIEHMSNSDTY-- 174
L + +I L+ E+ +DL + +G ++I+LIS ++ N L E+M+ +DT
Sbjct: 95 LFEAVIMSLKATEDQCAIQEDLLNLVGLDHIDLISDIVANSSNLIE---EYMNQNDTSIA 151
Query: 175 ---------EGNRFMTEEDMRRQVLKNR------EKGKNAKLATAQRKV---KYPHVFRQ 216
E T LK+R + L T Q+ KYPHV+
Sbjct: 152 AQLSDGYTSEAGSSATHGQGLLDSLKSRPRRFSRSRDNRGPLFTGQQVFEVEKYPHVY-- 209
Query: 217 SEDAGSSMLSFAGQKFALPAGSMRYTFQTHEEITIPCA--VPKRKFDIPLVKVSDLDEYC 274
+ + +S G+KFALPAGS R +Q +EEI +P A P+ + + L+++S +D C
Sbjct: 210 GDKRLGNTISVIGKKFALPAGSEREDYQKYEEIIVPHAQRAPQMQGE-KLLEISSMDILC 268
Query: 275 RKVF-EYDYLNKVQSLVYPVAYNTNGNMLICAPTGAGKTDIALLTILNTIKQF----SVI 329
RK F Y LN++QSLVYP+AY TN NMLICAPTGAGKTD+ALL +L TI + +++
Sbjct: 269 RKTFLSYQTLNRIQSLVYPIAYKTNENMLICAPTGAGKTDVALLAMLQTISNYVESMNLM 328
Query: 330 NEEGGFDIEYDDFKIIYVAPLKALAAEITDKFARKLSVFDVKVRELTGDMQLTKREILET 389
+E D+ DDFKI+Y+AP+KALAAE+ +K ++L+ +K RELTGDMQLTK EI ET
Sbjct: 329 DESEPLDVHRDDFKIVYIAPMKALAAEVVEKMGKRLAWLGLKTRELTGDMQLTKTEIAET 388
Query: 390 QVIVTTPEKWDVVTRKASGDNDLTSKVKLLILDEVHLLHEDRGSVIESLVARTLRQVESS 449
Q++VTTPEKWDVVTRK+ GD L KV+L+I+DEVH+LH++RG+VIESLVART R VE+S
Sbjct: 389 QILVTTPEKWDVVTRKSVGDTQLAEKVRLVIIDEVHMLHDERGAVIESLVARTQRLVETS 448
Query: 450 QTMIRILGLSATLPNFVDVADFLGVNRNVGMFYFDQSFRPKALEQHLIGCRGKAGSKQCR 509
Q MIRI+GLSATLPN++DVADFLGVNR G+FYF +FRP +EQH IG +G K
Sbjct: 449 QQMIRIVGLSATLPNYLDVADFLGVNRYKGLFYFSSAFRPCPIEQHFIGAKGSP--KIVN 506
Query: 510 ENTDKVAYEKAVEMMKLGNQVMIFVHSRKDTVKTARTLISMARDNYEMDLF-TSNDASVT 568
N D+ ++K +++++ G+QVMIFVHSRK+T+ +A+ L E DL S +
Sbjct: 507 SNIDEACFDKVLKLIQEGHQVMIFVHSRKETINSAKKLREQFFHEGEADLLDNSQHEKYS 566
Query: 569 IFQKELSKHKDKDLKELFQSGFGVHHAGMSRSDRNITEKMFKSGAVNVLVCTATLAWGVN 628
+ Q+++SK K+K+LKELF+ G+H+AGM RSDR++TE++F G + +L CTATLAWGVN
Sbjct: 567 LAQRDVSKSKNKELKELFKYSMGIHNAGMLRSDRHLTERLFSMGILKILCCTATLAWGVN 626
Query: 629 LPADCVIIKGTQVYDSKKGGYTDLGISDVIQIFGRAGRPGFGSDYGTAYLCTSNDRLDHY 688
LPA V+IKGTQ+YD +KG + DLG+ DV+QIFGRAGRP F S AY+ T++D+L HY
Sbjct: 627 LPAYAVLIKGTQLYDPQKGSFVDLGVLDVLQIFGRAGRPQFESS-AVAYIITTHDKLSHY 685
Query: 689 VDLITQQHPIESRLGAKVVDNLNAEISLGTVTNVEEGVKWLGYTYMFVRMKQNPFTYGID 748
+ ++TQQ PIESR ++VDNLNAE+SLGTVTN++E V WLGYTY+++RM++NP YGI
Sbjct: 686 ISVVTQQSPIESRFTDRLVDNLNAEVSLGTVTNIDEAVSWLGYTYLYIRMRRNPLVYGIA 745
Query: 749 WEEIRNDPQLYEKRRQIIITAARRLHSLQMIVFDEVSMHFIPKDLGRIASEFYLLNESVE 808
++E+ DP L KRR+++ AA RL QMIV+++ + + IPKDLGRIAS +Y+ ++V
Sbjct: 746 YDELVEDPLLGSKRRELVSVAAGRLADNQMIVYNKKNGYLIPKDLGRIASNYYINYQTVS 805
Query: 809 IFNQVANPRATEADVLAMISMSSEFDSIKFREEESNELNKLLDCAVECQISGDVDSSPGK 868
N + + +EAD++A++S SEF IK RE E EL L++ + CQ+ + ++ GK
Sbjct: 806 TLNNLLKSKMSEADIIALLSQCSEFSQIKSRENEHRELESLMENSSPCQLRDSISNTSGK 865
Query: 869 TNILLQAYVSQSRINDSALNSDANYIAQNSARICRALLLIGINRRWGTFSKVMLDICKSI 928
N++LQ+Y+S++ + D L SD NY+AQN+ RI RAL I ++R W + + +L + KSI
Sbjct: 866 VNVILQSYISRAHVEDFTLTSDTNYVAQNAGRITRALFEIAMSRTWAS-AFTILSLNKSI 924
Query: 929 EKRMWAFDHPLCQFDLPDTILRNIKAKNP----SXXXXXXXXXXXXXXXVHNQKMGGKLY 984
++R W+F+HPL QFDLP + +K +N S +HN+KMG +
Sbjct: 925 DRRQWSFEHPLLQFDLPHDLA--VKVENQCGSLSLEELSDMSTGELGDLIHNRKMGPTVK 982
Query: 985 RIISRFPRVDIDAEIFPITTNVMRVHISLLPNFEWDYHVHGDAQFFWVFVEESNQSSILH 1044
+ IS+ P ++I+ ++ P+T NV+R+ +++ PNF WD HG++Q FW+FVE+SN ILH
Sbjct: 983 KFISKLPLLNINVDLLPLTKNVLRLVLNITPNFNWDMRYHGNSQMFWIFVEDSNGLEILH 1042
Query: 1045 FEKFILNKRQLSNPHEMDFMIPLSDPLPPQVIVKVVSDTWIGCESAHTISFQHLIRPHNE 1104
E+ +LNKR +S H + F IP+S+PLP Q+ + VSD W+G E+ +S +++ +
Sbjct: 1043 HEQLLLNKRNVSTSHLLSFTIPVSNPLPSQLYIIAVSDKWLGAETVTPVSLSNVVFHDDS 1102
Query: 1105 TLQTRLQKLNPLPTSALKNPLVESIYP--FKYFNPMQTMVFHTLYHSNVSTFVGSPTGSG 1162
T L L PLP +AL +P++E I F +FN +QT FHT+YH++ + FVG+PTGSG
Sbjct: 1103 NPITELLDLQPLPITALHDPVLEGICAKRFSFFNAVQTQFFHTIYHTDTNIFVGAPTGSG 1162
Query: 1163 KTVVAELAIWHAFRDYPGSKVVYIAPMKALVRERVNDWRKRITPVTGDRIVELTGDSVPD 1222
KT+ AELA W A +YP SKVVYIAPMKALV+ERV DW R+ G ++ELTGD+ PD
Sbjct: 1163 KTMAAELATWRALHNYPKSKVVYIAPMKALVKERVKDWGHRLVEPMGISMIELTGDTNPD 1222
Query: 1223 PQDIKDATIVITTPEKFDGISRNWQTRKFVQNVSLIIMDEIHLLASDRGPILEMIVSRMN 1282
+ + +A I+ITTPEK+DGI+R+W++RK+VQ+VSLII+DEIHLL SDRGP+LEMIVSRMN
Sbjct: 1223 VKAVTNANIIITTPEKWDGITRSWKSRKYVQDVSLIILDEIHLLGSDRGPVLEMIVSRMN 1282
Query: 1283 YVSSQTKKPIRLLGMSTAVSNAFDMASWLGVKGNGLYNFPSSVRPVPLKMYIDGFPDNLN 1342
YV+SQT K +R+LG+STAV+NA D+A+WL ++ +GL+NF SVRPVPL++YIDGFP
Sbjct: 1283 YVASQTNKKVRVLGLSTAVANANDLANWLNIR-DGLFNFRHSVRPVPLEIYIDGFPGRA- 1340
Query: 1343 FCPLMKTMNKPAFMAIKQHSPEKPVLLFVASRRQTRLTALDLIHLCGMEDNPRRFLHIDD 1402
+CP M +MNKPAF AIK HSP +PVL+FV+SRRQTRLTA DLI CG+EDNPRRFL++D
Sbjct: 1341 YCPRMMSMNKPAFQAIKTHSPTQPVLIFVSSRRQTRLTAKDLIAFCGLEDNPRRFLYMD- 1399
Query: 1403 EEELQYYISKVSDDTLKLSLQFGIGLHHAGLIESDRAISHELFLRSKIQILVATSTLAWG 1462
EEEL+ +S+V D +LKL+L FGI LHHAGL E+DR IS ELF+ +K+QIL+ATSTLAWG
Sbjct: 1400 EEELEMIVSEVEDKSLKLALPFGIALHHAGLTENDRKISEELFVNNKVQILIATSTLAWG 1459
Query: 1463 VNLPAHLVIIKGTQFFDAKIEGYRDMDLTDILQMMGRAGRPAYDTSGTAIVYTKESKKMF 1522
VN PAHLVI+KGT+++DAKI GY+DMDLTD+LQM+GRAGRP +D SG A ++ ++ KK F
Sbjct: 1460 VNTPAHLVIVKGTEYYDAKIGGYKDMDLTDVLQMLGRAGRPQFDNSGVARIFVQDIKKSF 1519
Query: 1523 YKHFLNVGFPVESSLHKVLDDHMGAEIASGTISTKQEALDFLNWTFLFRRAHHNPTYYGI 1582
YKHFL+ GFPVES LHKVLD+H+ AEIA+GTI Q A+DFL T+ +RR H NP YYG
Sbjct: 1520 YKHFLHSGFPVESYLHKVLDNHLNAEIATGTIDCIQGAMDFLTCTYFYRRVHQNPVYYGA 1579
Query: 1583 NDDTSTSGINKYLSDLVNNTLDNLKESRCV-EIYGTNXXXXXXXXXXXXXXXXHKTIRSL 1641
+ D S I+ YLS LV + L++S C+ + H TIR+
Sbjct: 1580 DGDDQKS-IDTYLSKLVVTAFNELEKSACIYRVNEETYAPTTLGRIVSYYYLFHTTIRNF 1638
Query: 1642 LKQINSNASFQDVLKWLSLAVEYNELPVRNGEIIMNVEMSAQSRYSIESTFIDEFELPMW 1701
+++I NA F L+ L+ A E+++L +R+ E ++N+E++ +YS LPM
Sbjct: 1639 VQKITENAEFDLALQLLAEASEFDDLAIRHNEDLINIEINKSLKYSAAC-----LNLPMV 1693
Query: 1702 DPHVKAFLLLQAYLSRAELPIVDYHQDTISVLDQSLRILQAYVDVAAELGYFNTVMTLIK 1761
D HVKAF+L QA+++R +LP+ DY DT +VLDQ +RI+Q+Y+DV+AELGY + + I
Sbjct: 1694 DAHVKAFILTQAHMARLKLPVDDYVTDTSTVLDQVIRIIQSYIDVSAELGYSHVCLQYIS 1753
Query: 1762 AMQCVKQGYWYEDDPISALPG--AHLKRDDRIEFGDDGWPLPDNGYKMSLDSLARLQDDN 1819
MQC+KQ + + ++LPG A +++ R D Y+M + D N
Sbjct: 1754 LMQCLKQACYPSEIYRASLPGLNASSEKEARDYLNKFAGNKTDELYQMLCN------DPN 1807
Query: 1820 GAKNKVKNIMSRQYHVTPDHQKRMLREISRLPILDNIVFTSQTSNESLVLKATHHNR-VP 1878
V +I S ++ + P ++ + SQ+S++ L+L N+ +
Sbjct: 1808 -----VFDIES------------LVNSLISYPKMN--IEVSQSSSDKLLLYLRRLNQPLN 1848
Query: 1879 KEFSVYCAKYPKTQRELWFAIAYQND--ELIMLKRCQPRLGPNGKGL---LSFDFVVPED 1933
+F ++ +PK Q E +F + ++ EL ++R N + L +P
Sbjct: 1849 PDFYIFAPLFPKPQSEGFFVLIIDSETQELFAIRRASFAGRRNDDSIRLSLRISMDIPPT 1908
Query: 1934 IRGKELDFVLVSDALDIKYHLKHKLM 1959
R + + ++V D + Y K LM
Sbjct: 1909 CRNRNVKVMVVCDGYPLIYEHKIVLM 1934
>Hs14747366 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily
Length = 1866
Score = 1490 bits (3858), Expect = 0.0
Identities = 816/1781 (45%), Positives = 1135/1781 (62%), Gaps = 79/1781 (4%)
Query: 186 RRQVLKNREKGKNAKLATAQR-----KVKYPHVFRQSEDAGSSMLSFAGQKFALPAGSMR 240
R Q L N ++ + + QR K+ YPHV+ +A + AG K LP G R
Sbjct: 40 REQALLN---ARSVPILSRQRDADVEKIHYPHVYDSQAEAMKTSAFIAGAKMILPEGIQR 96
Query: 241 YTFQTHEEITIPCAVPKR-KFDIPLVKVSDLDEYCRKVFE-YDYLNKVQSLVYPVAYNTN 298
+ +EE+ IP + P F+ V + DLDE + F+ LN++QS+V+ AYNTN
Sbjct: 97 ENNKLYEEVRIPYSEPMPLSFEEKPVYIQDLDEIGQLAFKGMKRLNRIQSIVFETAYNTN 156
Query: 299 GNMLICAPTGAGKTDIALLTILNTIKQFSVINEEGGFDIEYDDFKIIYVAPLKALAAEIT 358
NMLICAPTGAGKT+IA+LT+L+ I+Q ++G I+ ++FKI+YVAP+KALAAE+T
Sbjct: 157 ENMLICAPTGAGKTNIAMLTVLHEIRQHF---QQGV--IKKNEFKIVYVAPMKALAAEMT 211
Query: 359 DKFARKLSVFDVKVRELTGDMQLTKREILETQVIVTTPEKWDVVTRKASGDNDLTSKVKL 418
D F+R+L + V+ELTGDMQL+K EIL TQ++VTTPEKWDVVTRK+ GD L+ V+L
Sbjct: 212 DYFSRRLEPLGIIVKELTGDMQLSKSEILRTQMLVTTPEKWDVVTRKSVGDVALSQIVRL 271
Query: 419 LILDEVHLLHEDRGSVIESLVARTLRQVESSQTMIRILGLSATLPNFVDVADFLGVNRNV 478
LILDEVHLLHEDRG V+ES+VARTLRQVES+Q+MIRILGLSATLPN++DVA FL VN +
Sbjct: 272 LILDEVHLLHEDRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHVNPYI 331
Query: 479 GMFYFDQSFRPKALEQHLIGCRGKAGSKQCRENTDKVAYEKAVEMMKLGNQVMIFVHSRK 538
G+F+FD FRP L Q +G + A Q N D+V YE ++ +K G+QVM+FVH+R
Sbjct: 332 GLFFFDGRFRPVPLGQTFLGIKC-ANKMQQLNNMDEVCYENVLKQVKAGHQVMVFVHARN 390
Query: 539 DTVKTARTLISMARDNYEMDLFTSNDA-SVTIFQKELSKHKDKDLKELFQSGFGVHHAGM 597
TV+TA +LI A++ + F + +K++ + ++K ++ELF GF +HHAGM
Sbjct: 391 ATVRTAMSLIERAKNCGHIPFFFPTQGHDYVLAEKQVQRSRNKQVRELFPDGFSIHHAGM 450
Query: 598 SRSDRNITEKMFKSGAVNVLVCTATLAWGVNLPADCVIIKGTQVYDSKKGGYTDLGISDV 657
R DRN+ E +F +G + VLVCTATLAWGVNLPA VIIKGTQ+Y +K+G + DLGI DV
Sbjct: 451 LRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRGSFVDLGILDV 510
Query: 658 IQIFGRAGRPGFGSDYGTAYLCTSNDRLDHYVDLITQQHPIESRLGAKVVDNLNAEISLG 717
+QIFGRAGRP F +G + T++D+L HY+ L+TQ++PIES+ + DNLNAEI+LG
Sbjct: 511 MQIFGRAGRPQFDK-FGEGIIITTHDKLSHYLTLLTQRNPIESQFLESLADNLNAEIALG 569
Query: 718 TVTNVEEGVKWLGYTYMFVRMKQNPFTYGIDWEEIRNDPQLYEKRRQIIITAARRLHSLQ 777
TVTNVEE VKW+ YTY++VRM+ NP YGI + + DP L + R Q++I R+L Q
Sbjct: 570 TVTNVEEAVKWISYTYLYVRMRANPLAYGISHKAYQIDPTLRKHREQLVIEVGRKLDKAQ 629
Query: 778 MIVFDEVSMHFIPKDLGRIASEFYLLNESVEIFNQVANPRATEADVLAMISMSSEFDSIK 837
MI F+E + +F DLGR AS +Y+ ++E FN++ + TE D+ A++S + EFD IK
Sbjct: 630 MIRFEERTGYFSSTDLGRTASHYYIKYNTIETFNELFDAHKTEGDIFAIVSKAEEFDQIK 689
Query: 838 FREEESNELNKLLDCAVECQISGDVDSSPGKTNILLQAYVSQSRINDSALNSDANYIAQN 897
REEE EL+ LL E G V++S GK NILLQ Y+S+ ++ +L SD+ Y+AQN
Sbjct: 690 VREEEIEELDTLLSNFCELSTPGGVENSYGKINILLQTYISRGEMDSFSLISDSAYVAQN 749
Query: 898 SARICRALLLIGINRRWGTFSKVMLDICKSIEKRMWAFDHPLCQFD-LPDTILRNIKAKN 956
+ARI RAL I + +RW T + +L++ K I+KR+W + PL QF LP IL ++ K
Sbjct: 750 AARIVRALFEIALRKRWPTMTYRLLNLSKVIDKRLWGWASPLRQFSILPPHILTRLEEKK 809
Query: 957 PSXXXXXXXXXXXXXXXVHNQKMGGKLYRIISRFPRVDIDAEIFPITTNVMRVHISLLPN 1016
+ +H+ +G K+ + + + P V ++A I PIT V+RV +S+ +
Sbjct: 810 LTVDKLKDMRKDEIGHILHHVNIGLKVKQCVHQIPSVMMEASIQPITRTVLRVTLSIYAD 869
Query: 1017 FEWDYHVHGDA-QFFWVFVEESNQSSILHFEKFILNKRQLSNPHE--MDFMIPLSDPLPP 1073
F W+ VHG + +W++VE+ I H E F+ K+Q+ + + F IP+ +PLP
Sbjct: 870 FTWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFLALKKQVISKEAQLLVFTIPIFEPLPS 929
Query: 1074 QVIVKVVSDTWIGCESAHTISFQHLIRPHNETLQTRLQKLNPLPTSALKNPLVESIYPFK 1133
Q ++ VSD W+G E+ I+FQHLI P T L L PLP +AL E++Y F
Sbjct: 930 QYYIRAVSDRWLGAEAVCIINFQHLILPERHPPHTELLDLQPLPITALGCKAYEALYNFS 989
Query: 1134 YFNPMQTMVFHTLYHSNVSTFVGSPTGSGKTVVAELAIWHAFRDYPGSKVVYIAPMKALV 1193
+FNP+QT +FHTLYH++ + +G+PTGSGKTV AELAI+ F YP SK VYIAP+KALV
Sbjct: 990 HFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTVAAELAIFRVFNKYPTSKAVYIAPLKALV 1049
Query: 1194 RERVNDWRKRITPVTGDRIVELTGDSVPDPQDIKDATIVITTPEKFDGISRNWQTRKFVQ 1253
RER++DW+ RI G +++ELTGD PD + I A +++TTPEK+DG+SR+WQ R +VQ
Sbjct: 1050 RERMDDWKVRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNRNYVQ 1109
Query: 1254 NVSLIIMDEIHLLASDRGPILEMIVSRMNYVSSQTKKPIRLLGMSTAVSNAFDMASWLGV 1313
V+++I+DEIHLL +RGP+LE+IVSR N++SS T+KP+R++G+STA++NA D+A WL +
Sbjct: 1110 QVTILIIDEIHLLGEERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLADWLNI 1169
Query: 1314 KGNGLYNFPSSVRPVPLKMYIDGFPDNLNFCPLMKTMNKPAFMAIKQHSPEKPVLLFVAS 1373
K GL+NF SVRPVPL+++I GFP ++CP M +MNKPAF AI+ HSP KPVL+FV+S
Sbjct: 1170 KQMGLFNFRPSVRPVPLEVHIQGFPGQ-HYCPRMASMNKPAFQAIRSHSPAKPVLIFVSS 1228
Query: 1374 RRQTRLTALDLIHLCGMEDNPRRFLHIDDEEELQYYISKVSDDTLKLSLQFGIGLHHAGL 1433
RRQTRLTAL+LI E++P+++L++ DE E++ I+ V D LKL+L FGIG+HHAGL
Sbjct: 1229 RRQTRLTALELIAFLATEEDPKQWLNM-DEREMENIIATVRDSNLKLTLAFGIGMHHAGL 1287
Query: 1434 IESDRAISHELFLRSKIQILVATSTLAWGVNLPAHLVIIKGTQFFDAKIEGYRDMDLTDI 1493
E DR ELF+ K+Q+L+ATSTLAWGVN PAHLVIIKGT+++D K Y D +TD+
Sbjct: 1288 HERDRKTVEELFVNCKVQVLIATSTLAWGVNFPAHLVIIKGTEYYDGKTRRYVDFPITDV 1347
Query: 1494 LQMMGRAGRPAYDTSGTAIVYTKESKKMFYKHFLNVGFPVESSLHKVLDDHMGAEIASGT 1553
LQMMGRAGRP +D G A++ + KK FYK FL FPVESSL VL DH+ AEIA GT
Sbjct: 1348 LQMMGRAGRPQFDDQGKAVILVHDIKKDFYKKFLYEPFPVESSLLGVLSDHLNAEIAGGT 1407
Query: 1554 ISTKQEALDFLNWTFLFRRAHHNPTYYGINDDTSTSGINKYLSDLVNNTLDNLKESRCVE 1613
I++KQ+ALD++ WT+ FRR NP+YY + D S +NK+LS L+ +L L+ S C+E
Sbjct: 1408 ITSKQDALDYITWTYFFRRLIMNPSYYNLG-DVSHDSVNKFLSHLIEKSLIELELSYCIE 1466
Query: 1614 IYGTNXXX--XXXXXXXXXXXXXHKTIRSLLKQINSNASFQDVLKWLSLAVEYNELPVRN 1671
I N H+T++ ++ S +++L LS A EY +LPVR+
Sbjct: 1467 IGEDNRSIEPLTYGRIASYYYLKHQTVKMFKDRLKPECSTEELLSILSDAEEYTDLPVRH 1526
Query: 1672 GEIIMNVEMSAQSRYSIESTFIDEFELPMWDPHVKAFLLLQAYLSRAELPIVDYHQDTIS 1731
E MN E++ D PH KA LLLQA+LSRA LP DY DT +
Sbjct: 1527 NEDHMNSELAKCLPIESNPHSFD-------SPHTKAHLLLQAHLSRAMLPCPDYDTDTKT 1579
Query: 1732 VLDQSLRILQAYVDVAAELGYFNTVMTLIKAMQCVKQGYWYEDDPISALPGAHLKRDDRI 1791
VLDQ+LR+ QA +DVAA G+ TV+ + +Q V QG W +D + LP
Sbjct: 1580 VLDQALRVCQAMLDVAANQGWLVTVLNITNLIQMVIQGRWLKDSSLLTLPNIENHHLHLF 1639
Query: 1792 EFGDDGWPLPDNGYKMSLDSLARLQDDNGAKNKV-KNIMSRQYHVTPDHQKRMLREISRL 1850
+ P + S++SL L G K+ V +++ + H K+ +S L
Sbjct: 1640 KKWKPIMKGPHARGRTSIESLPELIHACGGKDHVFSSMVESELHAA--KTKQAWNFLSHL 1697
Query: 1851 PILDNIVFTSQTSNESLV-----------------------------------LKATH-- 1873
P++ N+ + + S + LV L+ H
Sbjct: 1698 PVI-NVGISVKGSWDDLVEGHNELSVSTLTADKRDDNKWIKLHADQEYVLQVSLQRVHFG 1756
Query: 1874 -HNRVPKEFSVYCAKYPKTQRELWFAIAYQND--ELIMLKR 1911
H P+ +V ++PK++ E WF I + D ELI LKR
Sbjct: 1757 FHKGKPESCAV-TPRFPKSKDEGWFLILGEVDKRELIALKR 1796
>7300033 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily
Length = 1809
Score = 1409 bits (3647), Expect = 0.0
Identities = 779/1826 (42%), Positives = 1125/1826 (60%), Gaps = 68/1826 (3%)
Query: 178 RFMTEEDMRRQVLKNREKGK-NAKLATAQRKVKYPHVFRQSEDAGSSMLSFAGQKFALPA 236
R + E R +L + + K K ++ + + YP+VF A G + LP
Sbjct: 5 RKLLEAAQREPLLLSTKAAKAEYKQSSYNQPIHYPYVFDSQLLAKQHAGFIGGSRITLPD 64
Query: 237 GSMRYTFQTHEEITIPCAVPKR-KFDIPLVKVSDLDEYCRKVF-EYDYLNKVQSLVYPVA 294
+ R + EE+ IP + P V++ +LD+ R F LN++QS+V+PVA
Sbjct: 65 NAQRIDNKQWEEVKIPASEPPPLSVGNKRVQIEELDDVGRLAFANCKELNRIQSVVFPVA 124
Query: 295 YNTNGNMLICAPTGAGKTDIALLTILNTIKQFSVINEEGGFDIEYDDFKIIYVAPLKALA 354
Y++N NML+CAPTGAGKT++A+L+I++TI+ + E G I D+FKI+Y+AP+KALA
Sbjct: 125 YHSNENMLVCAPTGAGKTNVAMLSIVHTIR----CHLEQGV-INRDEFKIVYIAPMKALA 179
Query: 355 AEITDKFARKLSVFDVKVRELTGDMQLTKREILETQVIVTTPEKWDVVTRKASGDNDLTS 414
AE+ D F+++L + VRELTGD+QLTK E+ TQ++VTTPEKWDVVTRK SGD L S
Sbjct: 180 AEMVDNFSKRLKSLQIAVRELTGDIQLTKAEMAATQILVTTPEKWDVVTRKGSGDVALIS 239
Query: 415 KVKLLILDEVHLLHEDRGSVIESLVARTLRQVESSQTMIRILGLSATLPNFVDVADFLGV 474
V+LLI+DEVHLLH +RG V+E+LVARTLR VESSQ+MIRI+GLSATLPN++DVA FL V
Sbjct: 240 LVELLIIDEVHLLHGERGPVVEALVARTLRLVESSQSMIRIVGLSATLPNYIDVAHFLRV 299
Query: 475 NRNVGMFYFDQSFRPKALEQHLIGCRGKAGSKQCRENTDKVAYEKAVEMMKLGNQVMIFV 534
N G+FYFD FRP L+ + +G + +Q + D+ Y+K VEM++ G+Q+M+FV
Sbjct: 300 NPMKGLFYFDSRFRPVPLDTNFVGIKSVKQLQQIAD-MDQCCYQKCVEMVQEGHQIMVFV 358
Query: 535 HSRKDTVKTARTLISMARDNYEMDLFTSNDASVT-IFQKELSKHKDKDLKELFQSGFGVH 593
H+R TV+TA + +A+ N LF D++ + + + + ++K L ELF G +H
Sbjct: 359 HARNATVRTANVIRELAQQNNTSALFLPKDSAAHGLATRSIQRSRNKQLVELFSCGLAMH 418
Query: 594 HAGMSRSDRNITEKMFKSGAVNVLVCTATLAWGVNLPADCVIIKGTQVYDSKKGGYTDLG 653
HAGM R+DR + EK F G ++VLVCTATLAWGVNLPA VII+GT +YD+K G + DLG
Sbjct: 419 HAGMLRADRQMVEKYFVEGHISVLVCTATLAWGVNLPAHAVIIRGTDIYDAKHGSFVDLG 478
Query: 654 ISDVIQIFGRAGRPGFGSDYGTAYLCTSNDRLDHYVDLITQQHPIESRLGAKVVDNLNAE 713
I DV+QIFGRAGRP F G + TS D+L+HY+ L+T Q PIES + DNLNAE
Sbjct: 479 ILDVLQIFGRAGRPQFDKS-GVGTIITSYDKLNHYLSLLTNQFPIESNFVNCLADNLNAE 537
Query: 714 ISLGTVTNVEEGVKWLGYTYMFVRMKQNPFTYGIDWEEIRNDPQLYEKRRQIIITAARRL 773
I LGT+TNV+E ++WL YTY+FVRM+ NP YGI++ E+ DP L +RR +I++AA L
Sbjct: 538 IGLGTITNVDEAIEWLSYTYLFVRMRINPHVYGIEYSELEKDPTLEARRRALIMSAAMSL 597
Query: 774 HSLQMIVFDEVSMHFIPKDLGRIASEFYLLNESVEIFNQVANPRATEADVLAMISMSSEF 833
+M+ F++ +M DLGR AS FY+ ++VE FN++ P T+A++LAMIS + EF
Sbjct: 598 DKARMMRFNQRTMDMNITDLGRTASYFYIKYDTVETFNELMKPFMTQAEILAMISQAQEF 657
Query: 834 DSIKFREEESNELNKLLDCAVECQISGDVDSSPGKTNILLQAYVSQSRINDSALNSDANY 893
+K R++E EL++L + + + G ++ GK NIL+Q Y+S + +L+SD +Y
Sbjct: 658 QQLKVRDDEMEELDELKNAYCKIKPYGGSENVHGKVNILIQTYLSNGYVKSFSLSSDMSY 717
Query: 894 IAQNSARICRALLLIGINRRWGTFSKVMLDICKSIEKRMWAFDHPLCQF-DLPDTILRNI 952
I N RI RAL I + + S ML +CK E+R W FD L QF + + +
Sbjct: 718 ITTNIGRISRALFSIVLRQNNAVLSGNMLQLCKMFERRQWDFDCHLKQFPTINAETIDKL 777
Query: 953 KAKNPSXXXXXXXXXXXXXXXVHNQKMGGKLYRIISRFPRVDIDAEIFPITTNVMRVHIS 1012
+ + S + + + R P ++++A + PIT V+R+ +
Sbjct: 778 ERRGLSVYRLRDMEHRELKEWLRSNTYADLVIRSAHELPLLEVEASLQPITRTVLRIKVD 837
Query: 1013 LLPNFEWDYHVHG-DAQFFWVFVEESNQSSILHFEKFILNKRQL--SNPHEMDFMIPLSD 1069
+ P+F W+ VHG Q FW+++E+ + I H E F + ++ + ++ IPL +
Sbjct: 838 IWPSFTWNDRVHGKTCQSFWLWIEDPESNYIYHSELFQVTRKLVMSGQSQQLVMTIPLKE 897
Query: 1070 PLPPQVIVKVVSDTWIGCESAHTISFQHLIRPHNETLQTRLQKLNPLPTSALKNPLVESI 1129
PLPPQ ++V SD W+G + +SFQHL+ P + T L L PLP S LKN + ES+
Sbjct: 898 PLPPQYYIRVSSDNWLGSTTCIPLSFQHLVLPEHHPPLTELLPLRPLPVSCLKNVVYESL 957
Query: 1130 YPFKYFNPMQTMVFHTLYHSNVSTFVGSPTGSGKTVVAELAIWHAFRDYPGSKVVYIAPM 1189
Y F +FNP+QT +FH LYH++ + +G+PTGSGKT+VAE+AI+ A P KVVYIAP+
Sbjct: 958 YKFTHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIVAEIAIFRALNQNPKCKVVYIAPL 1017
Query: 1190 KALVRERVNDWRKRITPVT-GDRIVELTGDSVPDPQDIKDATIVITTPEKFDGISRNWQT 1248
KALV+ER+ DW +R + G ++VELTGD PD Q I+++ +++TTPEK+DGISR+WQT
Sbjct: 1018 KALVKERIADWEQRFQRSSLGLKVVELTGDVTPDIQAIRESQLIVTTPEKWDGISRSWQT 1077
Query: 1249 RKFVQNVSLIIMDEIHLLASDRGPILEMIVSRMNYVSSQTKKPIRLLGMSTAVSNAFDMA 1308
R++VQ+VSLI++DEIHLL DRGP++E+IVSR N++SS T + IR++G+STA++NA D+A
Sbjct: 1078 REYVQHVSLIVIDEIHLLGEDRGPVIEVIVSRTNFISSHTGRAIRIVGLSTALANAQDLA 1137
Query: 1309 SWLGVKGNGLYNFPSSVRPVPLKMYIDGFPDNLNFCPLMKTMNKPAFMAIKQHSPEKPVL 1368
+WLG+ GLYNF SVRPVPL+++I+GFP ++CP M TMN+P F AI+ +SP +P +
Sbjct: 1138 NWLGINKMGLYNFKPSVRPVPLQVHINGFPGK-HYCPRMATMNRPTFQAIRTYSPCEPTI 1196
Query: 1369 LFVASRRQTRLTALDLIHLCGMEDNPRRFLHIDDEEELQYYISKVSDDTLKLSLQFGIGL 1428
+FV+SRRQTRLTALDLI E NP++FLHI E+E++ + + + LK L FGIGL
Sbjct: 1197 VFVSSRRQTRLTALDLITFVAGESNPKQFLHI-PEDEIELILQNIREQNLKFCLAFGIGL 1255
Query: 1429 HHAGLIESDRAISHELFLRSKIQILVATSTLAWGVNLPAHLVIIKGTQFFDAKIEGYRDM 1488
HHAGL E DR ELFL KIQILVAT+TLAWGVNLPAHLV+IKGT++FD K++ Y DM
Sbjct: 1256 HHAGLQEQDRKCVEELFLNRKIQILVATATLAWGVNLPAHLVVIKGTEYFDGKVKKYVDM 1315
Query: 1489 DLTDILQMMGRAGRPAYDTSGTAIVYTKESKKMFYKHFLNVGFPVESSLHKVLDDHMGAE 1548
+TD+LQMMGRAGRP +D G A+V + KK FYK FL FPVESSL VL +H+ AE
Sbjct: 1316 PITDVLQMMGRAGRPQFDNEGVAVVLVHDEKKNFYKKFLYDPFPVESSLLGVLPEHINAE 1375
Query: 1549 IASGTISTKQEALDFLNWTFLFRRAHHNPTYYGINDDTSTSGINKYLSDLVNNTLDNLKE 1608
I +GT+ +KQ ALD+L WT+ FRR NP+YY + D +N ++S+LV + L
Sbjct: 1376 IVAGTVQSKQAALDYLTWTYFFRRLLRNPSYYQL-QDIEPENVNNFMSNLVERVVYELSA 1434
Query: 1609 SRCVEIYGTNXXXXXXXXXXXXXXXXHKTIRSLLKQINSNASFQDVLKWLSLAVEYNELP 1668
+ C+ ++T++ L+ + + + VL ++ + E+++LP
Sbjct: 1435 AACLVERDGCLIPTFLGRISSYYYLSYRTMKHFLEDLQPGMNTKKVLLAIADSYEFDQLP 1494
Query: 1669 VRNGEIIMNVEMSAQSRYSIESTFIDEFELPMWD-PHVKAFLLLQAYLSRAELPIVDYHQ 1727
VR+ E N EM+ SR+ S+ WD + K FLLLQA+ +R LP DY
Sbjct: 1495 VRHNEDKHNEEMAEVSRFRPPSS--------SWDSSYTKTFLLLQAHFARQSLPNSDYLT 1546
Query: 1728 DTISVLDQSLRILQAYVDVAAELGYFNTVMTLIKAMQCVKQGYWYEDDPISALPGAHLKR 1787
DT S LD + R++QA VD AE G+ +T + + + MQ V Q W++ LPG +
Sbjct: 1547 DTKSALDNATRVMQAMVDYTAERGWLSTTLVVQQLMQSVIQARWFDGSEFLTLPGVNEDN 1606
Query: 1788 -DDRIEFGDDGW-----PLPDNGYKMSLDSLARLQDDNGAKNKVKNIMSRQYHVTPD--- 1838
D + D + P+ K + LA+ D +++++ + Y V D
Sbjct: 1607 LDAFLNIPHDDYDYLTLPVLKELCKQEYEVLAKPLRDAFEEHEIE----KMYKVIQDLPE 1662
Query: 1839 -------HQKRMLREISRLPIL----DNIVFTSQTSNESLVL--------KATHHNRVPK 1879
+ M E ++ P+ + S +NE VL + +
Sbjct: 1663 IAIQIFVEGRHMENEYAKRPLSLSDDTRGEWMSLHANEDYVLIVNLQRLNVSGQRRGGGQ 1722
Query: 1880 EFSVYCAKYPKTQRELWFAI--AYQNDELIMLKRCQPRLGPNGKGLLSFDFVVPEDIRGK 1937
++V+C KYPK + E WF + NDEL+ +KR R G +SF +
Sbjct: 1723 SYTVHCPKYPKPKNEAWFLTLGSQANDELLAMKRVSIR-GQRCTNRISFQ--ATPRLGRL 1779
Query: 1938 ELDFVLVSDAL---DIKYHLKHKLME 1960
+L L+SD L D +Y L+ ++++
Sbjct: 1780 QLTLYLMSDCLMGFDQQYDLQFEIID 1805
>At5g61140 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily
Length = 2137
Score = 1347 bits (3487), Expect = 0.0
Identities = 751/1734 (43%), Positives = 1062/1734 (60%), Gaps = 121/1734 (6%)
Query: 103 RLLDNVDSDFPRDQLLQQLIELLRNNENTGTADQDLFDYLGAENIELISFLI-------- 154
R++ +S R++L + L +++ DL D +G E + LI
Sbjct: 302 RMVRETNSQLSREELAMAICRFLDSDKPGEEIAGDLLDLVGDGAFETVQDLIMHRKEIVD 361
Query: 155 ---ENQEILKHTPIEHMSNS--DTYEGNRFMTEEDMRRQV--LKNREKGKNAKLATAQRK 207
Q ILK + S TY G + + + +Q+ L+ +E+ KN + A +
Sbjct: 362 AIHHGQMILKSDKAASNTQSRMPTY-GTQVTVQTESAKQIEKLRRKEEKKNKRNADLGLE 420
Query: 208 VKYPHV-FRQSEDAGSSMLSF-----AGQK----FALPAGSMRYTFQTHEEITIP-CAVP 256
+ F +A +F +G+ ALP G++R + +EE+ IP
Sbjct: 421 SEISEANFSSLLEASEKKTAFEDLIGSGEANSLALALPQGTVRKHLKGYEEVFIPPTPTA 480
Query: 257 KRKFDIPLVKVSDLDEYCRKVFE-YDYLNKVQSLVYPVAYNTNGNMLICAPTGAGKTDIA 315
+ K L+++ +LD++ + F Y LN++QS ++ Y+TN N+L+CAPTGAGKT+IA
Sbjct: 481 QMKPGEKLIEIKELDDFAQAAFHGYKSLNRIQSRIFQTVYHTNENILVCAPTGAGKTNIA 540
Query: 316 LLTILNTIKQFSVINEEGGFDIEYDDFKIIYVAPLKALAAEITDKFARKLSVFDVKVREL 375
++++L+ IKQ + G+ + ++FKI+YVAP+KALAAE+T F+R+L+ ++ V+EL
Sbjct: 541 MISVLHEIKQ----HFRDGY-LHKNEFKIVYVAPMKALAAEVTSAFSRRLAPLNMVVKEL 595
Query: 376 TGDMQLTKREILETQVIVTTPEKWDVVTRKASGDNDLTSKVKLLILDEVHLLHEDRGSVI 435
TGDMQLTK E+ ETQ+IVTTPEKWDV+TRK+S D ++ VKLLI+DEVHLL++DRG+VI
Sbjct: 596 TGDMQLTKTELEETQMIVTTPEKWDVITRKSS-DMSMSMLVKLLIIDEVHLLNDDRGAVI 654
Query: 436 ESLVARTLRQVESSQTMIRILGLSATLPNFVDVADFLGVNRNVGMFYFDQSFRPKALEQH 495
E+LVARTLRQVES+QTMIRI+GLSATLP+++ VA FL VN + G+FYFD S+RP L Q
Sbjct: 655 EALVARTLRQVESTQTMIRIVGLSATLPSYLQVAQFLRVNTDTGLFYFDSSYRPVPLAQQ 714
Query: 496 LIGCRGKAGSKQCRENTDKVAYEKAVEMMKLGNQVMIFVHSRKDTVKTARTLISMARDNY 555
IG + + E +++ Y+K V+ +K G+Q MIFVHSRKDT KTA L+ +AR
Sbjct: 715 YIGITEHNFAAR-NELLNEICYKKVVDSIKQGHQAMIFVHSRKDTSKTAEKLVDLARQYE 773
Query: 556 EMDLFTSND-ASVTIFQKELSKHKDKDLKELFQSGFGVHHAGMSRSDRNITEKMFKSGAV 614
+DLFT+ + +K++ K ++KDL + F++GFG+HHAGM RSDR +TE++F G +
Sbjct: 774 TLDLFTNETHPQFQLMKKDVMKSRNKDLVKFFEAGFGIHHAGMLRSDRTLTERLFSDGLL 833
Query: 615 NVLVCTATLAWGVNLPADCVIIKGTQVYDSKKGGYTDLGISDVIQIFGRAGRPGFGSDYG 674
VLVCTATLAWGVNLPA V+IKGTQ+YD+K GG+ DLG+ DV+QIFGRAGRP F G
Sbjct: 834 KVLVCTATLAWGVNLPAHTVVIKGTQLYDAKAGGWKDLGMLDVMQIFGRAGRPQFDKS-G 892
Query: 675 TAYLCTSNDRLDHYVDLITQQHPIESRLGAKVVDNLNAEISLGTVTNVEEGVKWLGYTYM 734
+ TS+D+L +Y+ L+T Q PIES+ + + DNLNAE+ LGTVTNV+E WLGYTY+
Sbjct: 893 EGIIITSHDKLAYYLRLLTSQLPIESQFISSLKDNLNAEVVLGTVTNVKEACAWLGYTYL 952
Query: 735 FVRMKQNPFTYGIDWEEIRNDPQLYEKRRQIIITAARRLHSLQMIVFDEVSMHFIPKDLG 794
+RMK NP YGI WEEI DP L K+R ++ AAR L +M+ FDE S +F +LG
Sbjct: 953 SIRMKLNPLAYGIGWEEIIADPSLSLKQRALVADAARSLDKAKMMRFDEKSGNFYCTELG 1012
Query: 795 RIASEFYLLNESVEIFNQVANPRATEADVLAMISMSSEFDSIKFREEESNELNKLLDCAV 854
R+AS FY+ SVE +N++ E++++ M++ SSEF++I REEE +EL L
Sbjct: 1013 RVASHFYIQYSSVETYNEMLKRHMNESEIINMVAHSSEFENIVVREEEQHELETLARSCC 1072
Query: 855 ECQISGDVDSSPGKTNILLQAYVSQSRINDSALNSDANYIAQNSARICRALLLIGINRRW 914
++ G + GK +IL+Q Y+S+ I+ +L SDA+YI+ + ARI RAL I + + W
Sbjct: 1073 PLEVKGGPSNKHGKISILIQLYISRGSIDAFSLVSDASYISASLARIMRALFEICLRKGW 1132
Query: 915 GTFSKVMLDICKSIEKRMWAFDHPLCQFDLPDTILRNIKAKNPSXXXXXXXXXXXXXXXV 974
+ ML+ CK++++++W HPL QF+ R++ + +
Sbjct: 1133 CEMTLFMLEYCKAVDRQLWPHQHPLRQFE------RDLPSDRRDDLDHLYEMEEKEIGAL 1186
Query: 975 HNQKMGGKLYRIISRFPRVDIDAEIFPITTNVMRVHISLLPNFEWDYHVHGDAQFFWVFV 1034
GG R + FP + + A + PIT V++V + + PNF W HG A +W+ +
Sbjct: 1187 IRYNPGG---RHLGYFPSIQLAATVSPITRTVLKVDLLITPNFIWKDRFHGTALRWWILI 1243
Query: 1035 EESNQSSILHFEKFILNKRQL-SNPHEMDFMIPLSDPLPPQVIVKVVSDTWIGCESAHTI 1093
E++ I H + F L KR P ++ F +P+ +P PPQ V VSD+W+ E+ TI
Sbjct: 1244 EDTENDYIYHSDLFTLTKRMARGEPQKLSFTVPIFEPHPPQYYVHAVSDSWLHAETYFTI 1303
Query: 1094 SFQHLIRPHNETLQTRLQKLNPLPTSALKNPLVESIYPFKYFNPMQTMVFHTLYHSNVST 1153
SF +L P T T L L PLP ++L N L ES+Y F +FNP+QT +FH LYH++ +
Sbjct: 1304 SFHNLALPEARTSHTELLDLKPLPVTSLGNKLYESLYKFSHFNPIQTQIFHVLYHTDNNV 1363
Query: 1154 FVGSPTGSGKTVVAELAIWHAFRDYPGSKVVYIAPMKALVRERVNDWRKRITPVTGDRIV 1213
VG+PTGSGKT+ AELA+ F P KVVYIAP+KA+VRER+NDW+K + G +V
Sbjct: 1364 LVGAPTGSGKTISAELAMLRLFSTQPDMKVVYIAPLKAIVRERMNDWKKHLVAPLGKEMV 1423
Query: 1214 ELTGDSVPDPQDIKDATIVITTPEKFDGISRNWQTRKFVQNVSLIIMDEIHLLASDRGPI 1273
E+TGD PD + A I+I+TPEK+DGISRNW TR +V+ V L+I+DEIHLL +DRGPI
Sbjct: 1424 EMTGDYTPDLVALLSADIIISTPEKWDGISRNWHTRSYVKKVGLVILDEIHLLGADRGPI 1483
Query: 1274 LEMIVSRMNYVSSQTKKPIRLLGMSTAVSNAFDMASWLGVKGNGLYNFPSSVRPVPLKMY 1333
LE+ N VS K + L G +A++NA D+A WLGV GL+NF SVRPVP++++
Sbjct: 1484 LELYHDTCN-VSMVLVKSLYLFG--SALANAGDLADWLGVGEIGLFNFKPSVRPVPIEVH 1540
Query: 1334 IDGFPDNLNFCPLMKTMNKPAFMAIKQHSPEKPVLLFVASRRQTRLTALDLIHLCGMEDN 1393
I G+P +CP M +MNKPA+ AI HSP KPVL+FV+SRRQTRLTALDLI +++
Sbjct: 1541 IQGYPGKY-YCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDEH 1599
Query: 1394 PRRFLHIDDEEELQYYISKVSDDTLKLSLQFGIGLHHAGLIESDRAISHELFLRSKI--- 1450
PR+FL + EE+LQ +S+++D L+ +LQFGIGLHHAGL + DR+ ELF +KI
Sbjct: 1600 PRQFLSV-SEEDLQMVLSQITDQNLRHTLQFGIGLHHAGLNDHDRSAVEELFTNNKIQAI 1658
Query: 1451 -----------------------------QILVATSTLAWGVNLPAHLVIIKGTQFFDAK 1481
Q+LV+TSTLAWGVNLPAHLVIIKGT++FD K
Sbjct: 1659 SSTYSLCCLYRIHGYTFTLRLMMESMLPLQVLVSTSTLAWGVNLPAHLVIIKGTEYFDGK 1718
Query: 1482 IEGYRDMDLTDILQMMGRAGRPAYDTSGTAIVYTKESKKMFYKHFLNVGFPVESSLHKVL 1541
+ Y D LT+ILQMMGRAGRP +D G A++ E KK FYK FL FPVESSL + L
Sbjct: 1719 TKRYVDFPLTEILQMMGRAGRPQFDQHGKAVILVHEPKKSFYKKFLYEPFPVESSLKEKL 1778
Query: 1542 DDHMGAEIASGTISTKQEALDFLNWTFLFRRAHHNPTYYGINDDTSTSGINKYLSDLVNN 1601
DH AEI SGTI K++A+ +L WT+LFRR NP YYG+ + T I YLS LV
Sbjct: 1779 HDHFNAEIVSGTIGNKEDAVHYLTWTYLFRRLMANPAYYGL-EGTQDETICSYLSRLVQT 1837
Query: 1602 TLDNLKESRCVEIYGTNXXXXXXXXXXXXXXXXHKTIRSLLKQINSNASFQDVLKWLSLA 1661
T ++L++S C+++ + + T+ I + S + L L+ A
Sbjct: 1838 TFEDLEDSGCLKVNEDSVEPTMLGTIASQYYLCYMTVSMFGSNIGPDTSLEAFLHILAGA 1897
Query: 1662 VEYNELPVRNGEIIMNVEMSAQSRYSIESTFIDEFELPMWDPHVKAFLLLQAYLSRAELP 1721
EY+ELPVR+ E N +S + RY +++ +D DPHVKA LL
Sbjct: 1898 SEYDELPVRHNEENYNKTLSDRVRYPVDNNHLD-------DPHVKANLL----------- 1939
Query: 1722 IVDYHQDTISVLDQSLRILQAYVDVAAELGYFNTVMTLIKAMQCVKQGYWYEDD 1775
QA +D+ A G+ ++ +T ++ +Q V QG W + D
Sbjct: 1940 ------------------FQAMIDICANSGWLSSSLTCMRLLQMVMQGMWSDQD 1975
Score = 308 bits (789), Expect = 6e-83
Identities = 212/736 (28%), Positives = 365/736 (48%), Gaps = 52/736 (7%)
Query: 1078 KVVSDTWIGCESAHTISF---QHLIRPHNETLQTRLQKLNPLPTSALK--NPLVE----- 1127
K + IG A++++ Q +R H + + + P PT+ +K L+E
Sbjct: 438 KTAFEDLIGSGEANSLALALPQGTVRKHLKGYEEVF--IPPTPTAQMKPGEKLIEIKELD 495
Query: 1128 -----SIYPFKYFNPMQTMVFHTLYHSNVSTFVGSPTGSGKTVVAELAIWHAFRDYPGS- 1181
+ + +K N +Q+ +F T+YH+N + V +PTG+GKT +A +++ H + +
Sbjct: 496 DFAQAAFHGYKSLNRIQSRIFQTVYHTNENILVCAPTGAGKTNIAMISVLHEIKQHFRDG 555
Query: 1182 -------KVVYIAPMKALVRERVNDWRKRITPVTGDRIVELTGDSVPDPQDIKDATIVIT 1234
K+VY+APMKAL E + + +R+ P+ + ELTGD ++++ +++T
Sbjct: 556 YLHKNEFKIVYVAPMKALAAEVTSAFSRRLAPLNMV-VKELTGDMQLTKTELEETQMIVT 614
Query: 1235 TPEKFDGISRNWQTRKFVQNVSLIIMDEIHLLASDRGPILEMIVSRMNYVSSQTKKPIRL 1294
TPEK+D I+R V L+I+DE+HLL DRG ++E +V+R T+ IR+
Sbjct: 615 TPEKWDVITRKSSDMSMSMLVKLLIIDEVHLLNDDRGAVIEALVARTLRQVESTQTMIRI 674
Query: 1295 LGMSTAVSNAFDMASWLGVKGN-GLYNFPSSVRPVPLKMYIDGFPDNLNFCPLMKTMNKP 1353
+G+S + + +A +L V + GL+ F SS RPVPL G ++ NF + +N+
Sbjct: 675 VGLSATLPSYLQVAQFLRVNTDTGLFYFDSSYRPVPLAQQYIGITEH-NFAARNELLNEI 733
Query: 1354 AFMAIKQHSPE-KPVLLFVASRRQTRLTALDLIHLCGMEDNPRRFLHIDDEEELQYYISK 1412
+ + + ++FV SR+ T TA L+ L + F + E Q+ + K
Sbjct: 734 CYKKVVDSIKQGHQAMIFVHSRKDTSKTAEKLVDLARQYETLDLFTN---ETHPQFQLMK 790
Query: 1413 V------SDDTLKLSLQFGIGLHHAGLIESDRAISHELFLRSKIQILVATSTLAWGVNLP 1466
+ D +K + G G+HHAG++ SDR ++ LF +++LV T+TLAWGVNLP
Sbjct: 791 KDVMKSRNKDLVKF-FEAGFGIHHAGMLRSDRTLTERLFSDGLLKVLVCTATLAWGVNLP 849
Query: 1467 AHLVIIKGTQFFDAKIEGYRDMDLTDILQMMGRAGRPAYDTSGTAIVYTKESKKMFYKHF 1526
AH V+IKGTQ +DAK G++D+ + D++Q+ GRAGRP +D SG I+ T K +Y
Sbjct: 850 AHTVVIKGTQLYDAKAGGWKDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKLAYYLRL 909
Query: 1527 LNVGFPVESSLHKVLDDHMGAEIASGTISTKQEALDFLNWTFLFRRAHHNPTYYGIN--- 1583
L P+ES L D++ AE+ GT++ +EA +L +T+L R NP YGI
Sbjct: 910 LTSQLPIESQFISSLKDNLNAEVVLGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGWEE 969
Query: 1584 --DDTSTSGINKYLSDLVNNTLDNLKESRCVEIYGTNXXXXXXXXXXXXXXXXHKTIRSL 1641
D S S + L +LD K R E G N + ++ +
Sbjct: 970 IIADPSLSLKQRALVADAARSLDKAKMMRFDEKSG-NFYCTELGRVASHFYIQYSSVETY 1028
Query: 1642 LKQINSNASFQDVLKWLSLAVEYNELPVRNGEIIMNVEMSAQSRYSIESTFIDEFELPMW 1701
+ + + + +++ ++ + E+ + VR E +E A+S + E +
Sbjct: 1029 NEMLKRHMNESEIINMVAHSSEFENIVVREEE-QHELETLARSCCPL------EVKGGPS 1081
Query: 1702 DPHVKAFLLLQAYLSRAELPIVDYHQDTISVLDQSLRILQAYVDVAAELGYFNTVMTLIK 1761
+ H K +L+Q Y+SR + D + RI++A ++ G+ + +++
Sbjct: 1082 NKHGKISILIQLYISRGSIDAFSLVSDASYISASLARIMRALFEICLRKGWCEMTLFMLE 1141
Query: 1762 AMQCVKQGYWYEDDPI 1777
+ V + W P+
Sbjct: 1142 YCKAVDRQLWPHQHPL 1157
>CE20305 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily
Length = 1798
Score = 1308 bits (3384), Expect = 0.0
Identities = 720/1679 (42%), Positives = 1052/1679 (61%), Gaps = 60/1679 (3%)
Query: 210 YPHVF-RQSEDAGSSMLSFAGQKFALPAGSMRYTFQTHEEITIPCAVPKRKFDIPLVK-- 266
YP+VF + ++ G +M G KFALP GS R TF+THE + +P P K DI ++
Sbjct: 18 YPYVFDARLQNVGHTMFDINGMKFALPEGSKRDTFKTHESVYVP---PSNKGDIEKIQHV 74
Query: 267 -VSDLDEYCRKVFE-YDYLNKVQSLVYPVAYNTNGNMLICAPTGAGKTDIALLTILNTIK 324
V D+DE +K F+ ++ LN +QS+V+ AY T N+LICAPTGAGKT+IA+LTILNTI
Sbjct: 75 YVKDMDELGQKGFKGFEKLNVIQSIVFEQAYKTKENLLICAPTGAGKTNIAMLTILNTIH 134
Query: 325 QFSVINEEGGFDIEYDDFKIIYVAPLKALAAEITDKFARKLSVFDVKVRELTGDMQLTKR 384
+ N G DI DDFKIIY+AP+KALA E+T+ F ++L+ +KV+ELTGD QL++
Sbjct: 135 EHQ--NSRG--DIMKDDFKIIYIAPMKALATEMTESFGKRLAPLGLKVKELTGDTQLSRN 190
Query: 385 EILETQVIVTTPEKWDVVTRKASGDNDLTSKVKLLILDEVHLLHEDRGSVIESLVARTLR 444
E+ +TQ++V TPEKWDV+TRK++ DN L + V+LLI+DEVHLLH++RG VIE+LVARTLR
Sbjct: 191 EVADTQMLVLTPEKWDVITRKSTSDNSLINVVRLLIIDEVHLLHDERGPVIETLVARTLR 250
Query: 445 QVESSQTMIRILGLSATLPNFVDVADFLGVNRNVGMFYFDQSFRPKALEQHLIGCRGKAG 504
QVE SQ+ IRI+GLSATLPNF+DVA FL VN G+F+FD FRP L Q IG R
Sbjct: 251 QVEMSQSGIRIVGLSATLPNFIDVARFLRVNPYKGLFFFDGRFRPVPLTQKFIGTRKAGN 310
Query: 505 SKQCRENTDKVAYEKAVEMMKLGNQVMIFVHSRKDTVKTARTLISMARDNYEMDLFTSND 564
+ D V Y++ V+ +K G+QV++FVH+R T K + A +MDLF D
Sbjct: 311 FRDNLTLMDNVCYDEVVDFVKRGHQVLVFVHTRNGTAKLGEAFCARASVLGQMDLFLPKD 370
Query: 565 ASVTIF---QKELSKHKDK-DLKELFQSGFGVHHAGMSRSDRNITEKMFKSGAVNVLVCT 620
+ + + K ++ +++ + LFQ G G+HHAG+ R DR + E+ F G V+VL CT
Sbjct: 371 RASSKYIQADKAINICRNRAQISPLFQRGMGIHHAGLCRQDRILMERCFAEGHVSVLFCT 430
Query: 621 ATLAWGVNLPADCVIIKGTQVYDSKKGGYTDLGISDVIQIFGRAGRPGFGSDYGTAYLCT 680
ATLAWGVNLPA V+IKGT V+D++KG +TDLG+ DV QIFGRAGRP F ++ G + T
Sbjct: 431 ATLAWGVNLPAHAVVIKGTDVFDAEKGVFTDLGVLDVQQIFGRAGRPQFENE-GHGIIIT 489
Query: 681 SNDRLDHYVDLITQQHPIESRLGAKVVDNLNAEISLGTVTNVEEGVKWLGYTYMFVRMKQ 740
+ D++D Y+ ++ Q+PIES+ A++ DNLNAE++LGTV+ V+EGV+WL YTYM+ R +
Sbjct: 490 TRDKIDKYLTMLVHQNPIESQFYARLHDNLNAEVALGTVSTVDEGVEWLTYTYMYTRALK 549
Query: 741 NPFTYGIDWEEIRNDPQLYEKRRQIIITAARRLHSLQMIVFDEVSMHFIPKDLGRIASEF 800
NP YGI + I DP L + +I AA +L +MI FD + + DLGRIAS F
Sbjct: 550 NPMAYGIAYNAIERDPNLRDHFGNVIREAAMQLDQNKMIRFDMATEYLNSTDLGRIASNF 609
Query: 801 YLLNESVEIFNQVANPRATEAD---------VLAMISMSSEFDSIKFREEESNELNKLLD 851
Y+ E++++ N+ V+ +ISMS+EF ++K REEE +L +L+
Sbjct: 610 YVKYETIQLLNEAEKGVGLPVTFTSFMPDDMVIGLISMSTEFANLKCREEEIGDLEELMS 669
Query: 852 CAVECQI-SGDVDSSPGKTNILLQAYVSQSRINDSALNSDANYIAQNSARICRALLLIGI 910
+ G + S GK N+LLQ+ +S++ +SAL S+ Y+ QN+ R+CRA+ + +
Sbjct: 670 YGCMMNVRGGGLASVAGKVNVLLQSLISRTSTRNSALMSEQLYVQQNAGRLCRAMFEMVL 729
Query: 911 NRRWGTFSKVMLDICKSIEKRMWAFDHPLCQF----DLPDTILRNIKAKNPSXXXXXXXX 966
W + L I K +EK+MW L QF ++P T + I+ K
Sbjct: 730 KNGWSQAANAFLGIAKCVEKQMWMNQCALRQFIQIINIPITWIEKIERKKARESDLLELS 789
Query: 967 XXXXXXXVHNQKMGGKLYRIISRFPRVDIDAEIFPITTNVMRVHISLLPNFEWDYHVHGD 1026
G +LY + PR+D+ A+ PIT +++V ++L P F W+ +HG
Sbjct: 790 AKDLGYMFSCD--GDRLYTYLRYLPRMDVQAKFKPITYTIVQVEVTLTPTFIWNDQIHGK 847
Query: 1027 A--QFFWVFVEESNQSSILHFEKFILNKRQLSNPHEMD--FMIPLSD-PLPPQVIVKVVS 1081
+ Q F++ +E N++ I+H E+ + K +++ + F IP+ D L +++ S
Sbjct: 848 SGQQSFYLVLENLNENLIIHQERIGIGKMKVNRQETQNLVFTIPIVDCQLTNNFQLRLAS 907
Query: 1082 DTWIGCESAHTISFQHLIRPHNETLQTRLQKLNPLPTSALKNPLVESIYPFKYFNPMQTM 1141
+ ++ + +S + I P + T L L PLP LKN E+IY F YFNP+Q
Sbjct: 908 EYFVTDDVVVPMSLHNCILPKSFKSHTDLLDLEPLPIKTLKNSKFEAIYNFDYFNPIQAQ 967
Query: 1142 VFHTLYHSNVSTFVGSPTGSGKTVVAELAIWHAFRDYPGSKVVYIAPMKALVRERVNDWR 1201
VF LY ++ S +G+PTGSGKT+ AELA++ +D+PG KVVYIAP+K+LVRERV+DW+
Sbjct: 968 VFFCLYKTDKSALIGAPTGSGKTLCAELAMFRLLQDHPGMKVVYIAPLKSLVRERVDDWK 1027
Query: 1202 KRITPVTGDRIVELTGDSVPDPQDIKDATIVITTPEKFDGISRNWQTRKFVQNVSLIIMD 1261
K+ G R+VE++GD PDP+++ ++I+ITTPEK+DGISR+W TR++V+ V LI++D
Sbjct: 1028 KKFEDGMGYRVVEVSGDVTPDPEELAASSILITTPEKWDGISRSWATREYVRRVGLIVLD 1087
Query: 1262 EIHLLASDRGPILEMIVSRMNYV---SSQTKKPIRLLGMSTAVSNAFDMASWLGVKGNGL 1318
E+HLL DRG +LE IVSR+ + S T++P+RLLG+STA++NA D+A WLG+
Sbjct: 1088 EVHLLGVDRGAVLEAIVSRLKMITRRSHVTEEPVRLLGLSTALANAGDVAEWLGIPDEAC 1147
Query: 1319 YNFPSSVRPVPLKMYIDGFPDNLNFCPLMKTMNKPAFMAIKQHSPEKPVLLFVASRRQTR 1378
YNF SVRPVP+ ++I GFP ++CP M MNKPA+ AI +SP KPVL+FV+SRRQTR
Sbjct: 1148 YNFRPSVRPVPISVHIQGFPGQ-HYCPRMGLMNKPAYKAILTYSPRKPVLIFVSSRRQTR 1206
Query: 1379 LTALDLIHLCGMEDNPRRFLHIDDEEELQYYISKVSDDTLKLSLQFGIGLHHAGLIESDR 1438
LTAL ++L + NP+++L++ D EL+ ++ + D+ LKL+L FGIG+HHAGL +R
Sbjct: 1207 LTALAFVNLLIADHNPKQWLNM-DMLELEDLMAAIKDENLKLTLPFGIGMHHAGLSAHER 1265
Query: 1439 AISHELFLRSKIQILVATSTLAWGVNLPAHLVIIKGTQFFDAKIEGYRDMDLTDILQMMG 1498
AI +LF+ KIQ+L+AT+TLAWG+N PAHLVI+KGT++FD K Y D +TD+LQMMG
Sbjct: 1266 AIVEQLFIEKKIQVLIATATLAWGINCPAHLVIVKGTEYFDGKKGKYVDFPVTDVLQMMG 1325
Query: 1499 RAGRPAYDTSGTAIVYTKESKKMFYKHFLNVGFPVESSLHKVLDDHMGAEIASGTISTKQ 1558
RAGRP +D S A++Y +++KK FYK FL FPVESSL VL +H+ AEI++GTI +KQ
Sbjct: 1326 RAGRPQFDDSAVAVIYVQDAKKTFYKKFLYEPFPVESSLLPVLPNHVNAEISAGTIDSKQ 1385
Query: 1559 EALDFLNWTFLFRRAHHNPTYYGINDDTSTSGINKYLSDLVNNTLDNLKESRCVEIYGTN 1618
+++L+ T+L+RR NP YYG+ +D S + K+++ +V++++ L S C+ +
Sbjct: 1386 AIVEYLSKTYLYRRLFANPNYYGLEED-SEEAMLKFITKIVDDSVAELLASECIHVDSEQ 1444
Query: 1619 XXXXXX--XXXXXXXXXXHKTIRSLLKQINSNASFQDVLKWLSLAVEYNELPVRNGEIIM 1676
H+T+R L+K ++S S +++LK L+ EY E+PVR+ E ++
Sbjct: 1445 DVIKPTPCGRIASVYYLQHETVRFLVKSLHSGCSVENMLKILTDVPEYAEIPVRHNEDLI 1504
Query: 1677 NVEMSAQSRYSIESTFIDEFELPMWDPHVKAFLLLQAYLSRAELPIVDYHQDTISVLDQS 1736
N E+ + R ++ M KA LL QA+ R LP DY D SVLDQ
Sbjct: 1505 NTELQKKLRIRFSTSV-------MGTSACKAHLLFQAHFMRTVLP-TDYRTDLKSVLDQC 1556
Query: 1737 LRILQAYVDVAAELGYFNTVMTLIKAMQCVKQGYWYEDDPISALPGAHLKRDDRIEFGDD 1796
+RILQA ++A + + M +I Q W++D P+ LP HL +D G D
Sbjct: 1557 IRILQAMREMARLKNWLSATMNIILLQQMCHSARWHDDHPLLCLP--HLSHEDARSIG-D 1613
Query: 1797 GWPLPDNGYKMSLDSLARLQDDNGAKNKVKNIMSRQYHVTPDHQKR-MLREISRLPILD 1854
G +P + ++ L D A+ K + R+ + Q R +L+ + PI++
Sbjct: 1614 GMTIPQLQNHLEIEKSTSLDDAKLARRAQK--LFRECTKLDEAQSREVLKALCNWPIIN 1670
>Hs22042312 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily
Length = 2136
Score = 1212 bits (3136), Expect = 0.0
Identities = 662/1707 (38%), Positives = 1024/1707 (59%), Gaps = 60/1707 (3%)
Query: 120 QLIELLRNNENTGTADQDLFDYLGAENIELISFLIENQEILKHTPIEHMSNSDTYEGNRF 179
+++E+L+ + + L LG + I L +++ ++ + + + S+ E R
Sbjct: 288 EVLEILKTASDDRECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEA-EKERI 346
Query: 180 M-------------------TEEDMRRQVLKNREKGKNAKLATAQRKVKY--------PH 212
M +ED+ R+ RE+ + +++ T + P
Sbjct: 347 MGKMEADPELSKFLYQLHETEKEDLIREERSRRERVRQSRMDTDLETMDLDQGGEALAPR 406
Query: 213 VFRQSEDAGSSMLS--FAGQKFALPAGSMRYTFQTHEEITIPCAVPKR-KFDIPLVKVSD 269
ED + S A ++ LP GS R + +EE+ +P PK + L+ V
Sbjct: 407 QVLDLEDLVFTQGSHFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEK 466
Query: 270 LDEYCRKVFE-YDYLNKVQSLVYPVAYNTNGNMLICAPTGAGKTDIALLTILNTIKQFSV 328
L +Y + FE + LN++QS +Y A T+ N+L+CAPTGAGKT++AL+ +L I +
Sbjct: 467 LPKYAQAGFEGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKH-- 524
Query: 329 INEEGGFDIEYDDFKIIYVAPLKALAAEITDKFARKLSVFDVKVRELTGDMQLTKREILE 388
IN +G ++ DDFKIIY+AP+++L E+ F ++L+ + + V ELTGD QL K EI
Sbjct: 525 INMDGTINV--DDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISA 582
Query: 389 TQVIVTTPEKWDVVTRKASGDNDLTSKVKLLILDEVHLLHEDRGSVIESLVARTLRQVES 448
TQ+IV TPEKWD++TRK G+ T V+L+ILDE+HLLH+DRG V+E+LVAR +R +E
Sbjct: 583 TQIIVCTPEKWDIITRKG-GERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEM 641
Query: 449 SQTMIRILGLSATLPNFVDVADFLGVNRNVGMFYFDQSFRPKALEQHLIGCRGKAGSKQC 508
+Q +R++GLSATLPN+ DVA FL V+ G+FYFD SFRP LEQ +G K K+
Sbjct: 642 TQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRF 701
Query: 509 RENTDKVAYEKAVEMMKLGNQVMIFVHSRKDTVKTARTLISMARDNYEMDLFT-SNDASV 567
+ +++ YEK +E NQV++FVHSRK+T KTAR + M + + LF AS
Sbjct: 702 -QIMNEIVYEKIMEHAGK-NQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSAST 759
Query: 568 TIFQKELSKHKDKDLKELFQSGFGVHHAGMSRSDRNITEKMFKSGAVNVLVCTATLAWGV 627
+ + E + K+ +LK+L GF +HHAGM+R DR + E +F + VLV TATLAWGV
Sbjct: 760 EVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGV 819
Query: 628 NLPADCVIIKGTQVYDSKKGGYTDLGISDVIQIFGRAGRPGFGSDYGTAYLCTSNDRLDH 687
NLPA VIIKGTQVY +KG +T+LG D++Q+ GRAGRP + + G L TS+ L +
Sbjct: 820 NLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTK-GEGILITSHGELQY 878
Query: 688 YVDLITQQHPIESRLGAKVVDNLNAEISLGTVTNVEEGVKWLGYTYMFVRMKQNPFTYGI 747
Y+ L+ QQ PIES++ +K+ D LNAEI LG V N ++ V WLGY Y+++RM ++P YGI
Sbjct: 879 YLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGI 938
Query: 748 DWEEIRNDPQLYEKRRQIIITAARRLHSLQMIVFDEVSMHFIPKDLGRIASEFYLLNESV 807
++++ DP L ++R ++ TAA L ++ +D+ + +F +LGRIAS +Y+ N++V
Sbjct: 939 SHDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTV 998
Query: 808 EIFNQVANPRATEADVLAMISMSSEFDSIKFREEESNELNKLLDCAVECQISGDVDSSPG 867
+ +NQ+ P +E ++ + S+SSEF +I REEE EL KLL+ V + ++
Sbjct: 999 QTYNQLLKPTLSEIELFRVFSLSSEFKNITVREEEKLELQKLLE-RVPIPVKESIEEPSA 1057
Query: 868 KTNILLQAYVSQSRINDSALNSDANYIAQNSARICRALLLIGINRRWGTFSKVMLDICKS 927
K N+LLQA++SQ ++ AL +D Y+ Q++ R+ RA+ I +NR W + L++CK
Sbjct: 1058 KINVLLQAFISQLKLEGFALMADMVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKM 1117
Query: 928 IEKRMWAFDHPLCQF-DLPDTILRNIKAKNPSXXXXXXXXXXXXXXXVHNQKMGGKLYRI 986
I+KRMW PL QF LP+ +++ I+ KN + KMG +++
Sbjct: 1118 IDKRMWQSMCPLRQFRKLPEEVVKKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKY 1177
Query: 987 ISRFPRVDIDAEIFPITTNVMRVHISLLPNFEWDYHVHGDAQFFWVFVEESNQSSILHFE 1046
+ FP++++ + PIT + ++V +++ P+F+WD VHG ++ FW+ VE+ + ILH E
Sbjct: 1178 VHLFPKLELSVHLQPITRSTLKVELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHE 1237
Query: 1047 KFILNKRQLSNPHEMDFMIPLSDPLPPQVIVKVVSDTWIGCESAHTISFQHLIRPHNETL 1106
F+L + + H + F +P+ +PLPPQ ++VVSD W+ CE+ +SF+HLI P
Sbjct: 1238 YFLLKAKYAQDEHLITFFVPVFEPLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPP 1297
Query: 1107 QTRLQKLNPLPTSALKNPLVESIYP--FKYFNPMQTMVFHTLYHSNVSTFVGSPTGSGKT 1164
T L L PLP SAL+N ES+Y F +FNP+QT VF+T+Y+S+ + FVG+PTGSGKT
Sbjct: 1298 PTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKT 1357
Query: 1165 VVAELAIWHAFRDYPGSKVVYIAPMKALVRERVNDWRKRITPVTGDRIVELTGDSVPDPQ 1224
+ AE AI + VYI PM+AL + DW ++ ++V LTG++ D +
Sbjct: 1358 ICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLK 1417
Query: 1225 DIKDATIVITTPEKFDGISRNWQTRKFVQNVSLIIMDEIHLLASDRGPILEMIVSRMNYV 1284
+ I+I+TPEK+D +SR W+ RK VQN++L ++DE+HL+ + GP+LE+I SRM Y+
Sbjct: 1418 LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYI 1477
Query: 1285 SSQTKKPIRLLGMSTAVSNAFDMASWLGVKGNGLYNFPSSVRPVPLKMYIDGFPDNLNFC 1344
SSQ ++PIR++ +S+++SNA D+A WLG +NF +VRPVPL+++I GF +
Sbjct: 1478 SSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQT 1537
Query: 1345 PLMKTMNKPAFMAIKQHSPEKPVLLFVASRRQTRLTALDLIHLCGMEDNPRRFLHIDDEE 1404
L+ +M KP + AI +HSP+KPV++FV SR+QTRLTA+D++ C + +RFLH E+
Sbjct: 1538 RLL-SMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHC-TEK 1595
Query: 1405 ELQYYISKVSDDTLKLSLQFGIGLHHAGLIESDRAISHELFLRSKIQILVATSTLAWGVN 1464
+L Y+ K+SD TLK +L G+G H GL +R + +LF IQ++VA+ +L WG+N
Sbjct: 1596 DLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMN 1655
Query: 1465 LPAHLVIIKGTQFFDAKIEGYRDMDLTDILQMMGRAGRPAYDTSGTAIVYTKESKKMFYK 1524
+ AHLVII TQ+++ KI Y D + D+LQM+G A RP D G ++ + SKK F+K
Sbjct: 1656 VAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFK 1715
Query: 1525 HFLNVGFPVESSLHKVLDDHMGAEIASGTISTKQEALDFLNWTFLFRRAHHNPTYYGIND 1584
FL PVES L + DH AEI + TI KQ+A+D+L WTFL+RR NP YY +
Sbjct: 1716 KFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNL-Q 1774
Query: 1585 DTSTSGINKYLSDLVNNTLDNLKESRCVEIYG-TNXXXXXXXXXXXXXXXXHKTIRSLLK 1643
S ++ +LS+LV TL +L++S+C+ I + + TI
Sbjct: 1775 GISHRHLSDHLSELVEQTLSDLEQSKCISIEDEMDVAPLNLGMIAAYYYINYTTIELFSM 1834
Query: 1644 QINSNASFQDVLKWLSLAVEYNELPVRNGEIIMNVEMSAQSRYSIESTFIDEFELPMWDP 1703
+N+ + +++ +S A EY +P+R+ E + +++ + + + + + DP
Sbjct: 1835 SLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFN-------DP 1887
Query: 1704 HVKAFLLLQAYLSRAELPIVDYHQDTISVLDQSLRILQAYVDVAAELGYFNTVMTLIKAM 1763
HVK LLLQA+LSR +L + DT +L +++R++QA VDV + G+ + + ++
Sbjct: 1888 HVKTNLLLQAHLSRMQLS-AELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELA 1946
Query: 1764 QCVKQGYWYEDDPISALP---GAHLKR 1787
Q V Q W +D + LP H+KR
Sbjct: 1947 QMVTQAMWSKDSYLKQLPHFTSEHIKR 1973
>At1g20960 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily
Length = 2171
Score = 1172 bits (3033), Expect = 0.0
Identities = 711/1910 (37%), Positives = 1068/1910 (55%), Gaps = 141/1910 (7%)
Query: 117 LLQQLIELLRNNENTGTADQDLFDYLGAENIELISFLIENQEILKHTPIEHMSNSDTYEG 176
L ++L+++L ++ D+ L +L E L+ FL+ N+ LK ++ ++ E
Sbjct: 299 LAEELLKILAEGDDRVVEDK-LLMHLQYEKFSLVKFLLRNR--LKVVWCTRLARAEDQE- 354
Query: 177 NRFMTEEDMR----------------RQVLKNREKGKNAKLATAQRKVK----------- 209
R EE+MR R K RE+ + R++K
Sbjct: 355 ERNRIEEEMRGLGPELTAIVEQLHATRATAKEREENLQKSINEEARRLKDETGGDGGRGR 414
Query: 210 -----------YPHVFRQSEDAGSSM-----LSFAGQKFALPAGSMRYTFQTHEEITIPC 253
+ RQ D S L A +K LP GS R + ++E+ +P
Sbjct: 415 RDVADRDSESGWVKGQRQMLDLESLAFDQGGLLMANKKCDLPPGSYRSHGKGYDEVHVPW 474
Query: 254 AVPKRKFDIPLVKVSDLDEYCRKVFE-YDYLNKVQSLVYPVAYNTNGNMLICAPTGAGKT 312
K + LVK++++ ++ + F+ LN+VQS VY A N+L+CAPTGAGKT
Sbjct: 475 VSKKVDRNEKLVKITEMPDWAQPAFKGMQQLNRVQSKVYDTALFKAENILLCAPTGAGKT 534
Query: 313 DIALLTILNTIKQFSVINEEGGFDIEYDDFKIIYVAPLKALAAEITDKFARKLSVFDVKV 372
++A+LTIL ++ N +G ++ + D+KI+YVAP+KAL AE+ + +L + V V
Sbjct: 535 NVAMLTILQQLEMNR--NTDGTYN--HGDYKIVYVAPMKALVAEVVGNLSNRLKDYGVIV 590
Query: 373 RELTGDMQLTKREILETQVIVTTPEKWDVVTRKASGDNDLTSKVKLLILDEVHLLHEDRG 432
REL+GD LT REI ETQ+IVTTPEKWD++TRK SGD T V+LLI+DE+HLLH++RG
Sbjct: 591 RELSGDQSLTGREIEETQIIVTTPEKWDIITRK-SGDRTYTQLVRLLIIDEIHLLHDNRG 649
Query: 433 SVIESLVARTLRQVESSQTMIRILGLSATLPNFVDVADFLGVNRNVGMFYFDQSFRPKAL 492
V+ES+VARTLRQ+E+++ IR++GLSATLPN+ DVA FL V+ G+F FD+S+RP L
Sbjct: 650 PVLESIVARTLRQIETTKENIRLVGLSATLPNYEDVALFLRVDLKKGLFKFDRSYRPVPL 709
Query: 493 EQHLIGCRGKAGSKQCRENTDKVAYEKAVEMMKLGNQVMIFVHSRKDTVKTARTLISMAR 552
Q IG K ++ + D + Y+K + +QV+IFVHSRK+T KTAR + A
Sbjct: 710 HQQYIGISVKKPLQRFQLMND-LCYQKVLAGAGK-HQVLIFVHSRKETSKTARAIRDTAM 767
Query: 553 DNYEMDLFTSNDASVTIFQKELSKHKD----KDLKELFQSGFGVHHAGMSRSDRNITEKM 608
N + F D+ + + L H+D DLK++ GF +HHAG+SR DR I E +
Sbjct: 768 ANDTLSRFLKEDS---VTRDVLHSHEDIVKNSDLKDILPYGFAIHHAGLSRGDREIVETL 824
Query: 609 FKSGAVNVLVCTATLAWGVNLPADCVIIKGTQVYDSKKGGYTDLGISDVIQIFGRAGRPG 668
F G V VLV TATLAWGVNLPA VIIKGTQVY+ +KG + +L DV+Q+ GRAGRP
Sbjct: 825 FSQGHVQVLVSTATLAWGVNLPAHTVIIKGTQVYNPEKGAWMELSPLDVMQMLGRAGRPQ 884
Query: 669 FGSDYGTAYLCTSNDRLDHYVDLITQQHPIESRLGAKVVDNLNAEISLGTVTNVEEGVKW 728
+ +G + T L +Y+ L+ +Q PIES+ +K+ D LNAEI LGTV N E W
Sbjct: 885 Y-DQHGEGIIITGYSELQYYLSLMNEQLPIESQFISKLADQLNAEIVLGTVQNAREACHW 943
Query: 729 LGYTYMFVRMKQNPFTYGIDWEEIRNDPQLYEKRRQIIITAARRLHSLQMIVFDEVSMHF 788
LGYTY+++RM +NP YG+ + + D L E+R +I +AA L ++ +D S +F
Sbjct: 944 LGYTYLYIRMVRNPTLYGLAPDALAKDVVLEERRADLIHSAATILDKNNLVKYDRKSGYF 1003
Query: 789 IPKDLGRIASEFYLLNESVEIFNQVANPRATEADVLAMISMSSEFDSIKFREEESNELNK 848
DLGRIAS +Y+ + ++ +N+ P + D+ + S+S EF + R++E EL K
Sbjct: 1004 QVTDLGRIASYYYITHGTIATYNEHLKPTMGDIDLYRLFSLSDEFKYVTVRQDEKMELAK 1063
Query: 849 LLDCAVECQISGDVDSSPGKTNILLQAYVSQSRINDSALNSDANYIAQNSARICRALLLI 908
LLD V I ++ K N+LLQAY+SQ ++ +L SD YI Q++ R+ RAL I
Sbjct: 1064 LLD-RVPIPIKETLEEPSAKINVLLQAYISQLKLEGLSLTSDMVYITQSAGRLVRALYEI 1122
Query: 909 GINRRWGTFSKVMLDICKSIEKRMWAFDHPLCQFD-LPDTILRNIKAKNPSXXXXXXXXX 967
+ R W ++ L++ K + KRMW+ PL QF L + IL ++ K+
Sbjct: 1123 VLKRGWAQLAEKALNLSKMVGKRMWSVQTPLRQFHGLSNDILMQLEKKDLVWERYYDLSA 1182
Query: 968 XXXXXXVHNQKMGGKLYRIISRFPRVDIDAEIFPITTNVMRVHISLLPNFEWDYHVHGDA 1027
+ + KMG L++ I +FP+V + A + PIT V+ V +++ P+F WD +H
Sbjct: 1183 QELGELIRSPKMGKPLHKFIHQFPKVTLSAHVQPITRTVLNVELTVTPDFLWDEKIHKYV 1242
Query: 1028 QFFWVFVEESNQSSILHFEKFILNKRQLSNPHEMDFMIPLSDPLPPQVIVKVVSDTWIGC 1087
+ FW+ VE+++ ILH E F+L K+ + H + F +P+ +PLPPQ V+VVSD W+G
Sbjct: 1243 EPFWIIVEDNDGEKILHHEYFLLKKQYIDEDHTLHFTVPIFEPLPPQYFVRVVSDKWLGS 1302
Query: 1088 ESAHTISFQHLIRPHNETLQTRLQKLNPLPTSALKNPLVESIYP-FKYFNPMQTMVFHTL 1146
E+ +SF+HLI P T L L PLP +AL+NP E +Y FK+FNP+QT VF L
Sbjct: 1303 ETVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPNYEILYQDFKHFNPVQTQVFTVL 1362
Query: 1147 YHSNVSTFVGSPTGSGKTVVAELAIWHAFRDYPGS--KVVYIAPMKALVRERVNDWRKRI 1204
Y++N + V +PTGSGKT+ AE AI + P + +VVYIAP++A+ +E+ W +
Sbjct: 1363 YNTNDNVLVAAPTGSGKTICAEFAILRNHHEGPDATMRVVYIAPLEAIAKEQFRIWEGKF 1422
Query: 1205 TPVTGDRIVELTGDSVPDPQDIKDATIVITTPEKFDGISRNWQTRKFVQNVSLIIMDEIH 1264
G R+VELTG++ D + ++ I+I+TPEK+D +SR W+ RK+VQ VSL I+DE+H
Sbjct: 1423 GKGLGLRVVELTGETALDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIVDELH 1482
Query: 1265 LLASDRGPILEMIVSRMNYVSSQTKKPIRLLGMSTAVSNAFDMASWLGVKGNGLYNFPSS 1324
L+ GP+LE+IVSRM Y+SSQ IR++ +ST+++NA D+ W+G +GL+NFP
Sbjct: 1483 LIGGQHGPVLEVIVSRMRYISSQVINKIRIVALSTSLANAKDLGEWIGASSHGLFNFPPG 1542
Query: 1325 VRPVPLKMYIDGFPDNLNFCPLMKTMNKPAFMAIKQHSP-EKPVLLFVASRRQTRLTALD 1383
VRPVPL+++I G D +F M+ M KP + AI QH+ +KP ++FV +R+ RLTA+D
Sbjct: 1543 VRPVPLEIHIQGV-DISSFEARMQAMTKPTYTAIVQHAKNKKPAIVFVPTRKHVRLTAVD 1601
Query: 1384 LIHLCGMEDNPRR--FLHIDDEEELQYYISKVSDDTLKLSLQFGIGLHHAGLIESDRAIS 1441
L+ M DNP+ FL + EEL ++ ++ ++TLK +L GIG H GL D+ I
Sbjct: 1602 LMAYSHM-DNPQSPDFL-LGKLEELDPFVEQIREETLKETLCHGIGYLHEGLSSLDQEIV 1659
Query: 1442 HELFLRSKIQILVATSTLAWGVNLPAHLVIIKGTQFFDAKIEGYRDMDLTDILQMMGRAG 1501
+LF +IQ+ V +S+L WG L AHLV++ GTQ++D + + D + D+LQMMGRA
Sbjct: 1660 TQLFEAGRIQVCVMSSSLCWGTPLTAHLVVVMGTQYYDGRENSHSDYPVPDLLQMMGRAS 1719
Query: 1502 RPAYDTSGTAIVYTKESKKMFYKHFLNVGFPVESSLHKVLDDHMGAEIASGTISTKQEAL 1561
RP D +G +++ +K +YK FL FPVES L L D+ AE+ +G I KQ+A+
Sbjct: 1720 RPLLDNAGKCVIFCHAPRKEYYKKFLYEAFPVESQLQHFLHDNFNAEVVAGVIENKQDAV 1779
Query: 1562 DFLNWTFLFRRAHHNPTYYGINDDTSTSGINKYLSDLVNNTLDNLKESRCVEIYG-TNXX 1620
D+L WTF++RR NP YY + S ++ +LS+LV NTL +L+ S+C+E+
Sbjct: 1780 DYLTWTFMYRRLPQNPNYYNL-QGVSHRHLSDHLSELVENTLSDLEASKCIEVEDEMELS 1838
Query: 1621 XXXXXXXXXXXXXXHKTIRSLLKQINSNASFQDVLKWLSLAVEYNELPVRNGEIIMNVEM 1680
+ TI ++S + +L+ L+ A EY+ +P+R GE +
Sbjct: 1839 PLNLGMIASYYYISYTTIERFSSLLSSKTKMKGLLEILTSASEYDMIPIRPGEEDTVRRL 1898
Query: 1681 SAQSRYSIESTFIDEFELPMWDPHVKAFLLLQAYLSRAELPIVDYHQDTISVLDQSLRIL 1740
R+S E+ DPHVKA LLQA+ SR + + D VL + R+L
Sbjct: 1899 INHQRFSFENP-------KCTDPHVKANALLQAHFSRQNIG-GNLAMDQRDVLLSATRLL 1950
Query: 1741 QAYVDVAAELGYFNTVMTLIKAMQCVKQGYWYEDDPISALPGAHLKRDDRIEFGDDGWPL 1800
QA VDV + G+ N + ++ Q V QG W D + LP H +D
Sbjct: 1951 QAMVDVISSNGWLNLALLAMEVSQMVTQGMWERDSMLLQLP--HFTKD------------ 1996
Query: 1801 PDNGYKMSLDSLARLQDDNGAKN--KVKNIMSRQYHVTPDHQKRMLREISRLPILDNIVF 1858
LA+ +N KN V +++ + D +++ L ++S +LD F
Sbjct: 1997 -----------LAKRCQENPGKNIETVFDLVEME-----DEERQELLKMSDAQLLDIARF 2040
Query: 1859 TSQTSNESLVLKATHHNRV--PKEFS-----------------VYCAKYPKTQRELWFAI 1899
++ N L + V KE + V +YPKT+ E W+ +
Sbjct: 2041 CNRFPNIDLTYEIVGSEEVNPGKEVTLQVMLERDMEGRTEVGPVDSLRYPKTKEEGWWLV 2100
Query: 1900 A--YQNDELIMLKRCQPRLGPNGKGLLSFDFVVPEDIRGKELDFVLVSDA 1947
+ ++L+ +K R+ K + DF P + K + D+
Sbjct: 2101 VGDTKTNQLLAIK----RVSLQRKVKVKLDFTAPSEPGEKSYTLYFMCDS 2146
>At2g42270 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily
Length = 2172
Score = 1145 bits (2963), Expect = 0.0
Identities = 661/1746 (37%), Positives = 1005/1746 (56%), Gaps = 80/1746 (4%)
Query: 231 KFALPAGSMRYTFQTHEEITIPCAVPKRKFDIPLVKVSDLDEYCRKVFE-YDYLNKVQSL 289
K LP S R + +E+ +P K + LVK+SDL E+ + F LN+VQS
Sbjct: 453 KCELPDRSFRIRGKEFDEVHVPWVSKKFDSNEKLVKISDLPEWAQPAFRGMQQLNRVQSK 512
Query: 290 VYPVAYNTNGNMLICAPTGAGKTDIALLTILNTIKQFSVINEEGGFDIEYDDFKIIYVAP 349
VY A N+L+CAPTGAGKT++A+LTIL+ + +N G + ++KI+YVAP
Sbjct: 513 VYGTALFKADNILLCAPTGAGKTNVAVLTILHQLG----LNMNPGGTFNHGNYKIVYVAP 568
Query: 350 LKALAAEITDKFARKLSVFDVKVRELTGDMQLTKREILETQVIVTTPEKWDVVTRKASGD 409
+KAL AE+ D +++L F V V+EL+GD LT +EI ETQ+IVTTPEKWD++TRK SGD
Sbjct: 569 MKALVAEVVDSLSQRLKDFGVTVKELSGDQSLTGQEIKETQIIVTTPEKWDIITRK-SGD 627
Query: 410 NDLTSKVKLLILDEVHLLHEDRGSVIESLVARTLRQVESSQTMIRILGLSATLPNFVDVA 469
T V+LLI+DE+HLL ++RG V+ES+VARTLRQ+ES++ IR++GLSATLPN DVA
Sbjct: 628 RTYTQLVRLLIIDEIHLLDDNRGPVLESIVARTLRQIESTKEHIRLVGLSATLPNCDDVA 687
Query: 470 DFLGVNRNVGMFYFDQSFRPKALEQHLIGCRGKAGSKQCRENTDKVAYEKAVEMMKLGNQ 529
FL V+ G+F FD+S+RP L Q IG K ++ + D + Y+K V + +Q
Sbjct: 688 SFLRVDLKNGLFIFDRSYRPVPLGQQYIGINVKKPLRRFQLMND-ICYQKVVAVAGK-HQ 745
Query: 530 VMIFVHSRKDTVKTARTLISMARDNYEMDLFTSNDASVTIFQKELSKH-KDKDLKELFQS 588
V+IFVHSRK+T KTAR + A N + F D+ K L+ K+ DLKEL
Sbjct: 746 VLIFVHSRKETAKTARAIRDTAMANDTLSRFLKEDSQSREILKCLAGLLKNNDLKELLPY 805
Query: 589 GFGVHHAGMSRSDRNITEKMFKSGAVNVLVCTATLAWGVNLPADCVIIKGTQVYDSKKGG 648
GF +HHAG++R+DR I E F+ G + VL+ TATLAWGVNLPA VIIKGTQVY+ ++G
Sbjct: 806 GFAIHHAGLTRTDREIVENQFRWGNLQVLISTATLAWGVNLPAHTVIIKGTQVYNPERGE 865
Query: 649 YTDLGISDVIQIFGRAGRPGFGSDYGTAYLCTSNDRLDHYVDLITQQHPIESRLGAKVVD 708
+ +L DV+Q+ GRAGRP + G + T +L +Y+ L+ +Q PIES+ +K+ D
Sbjct: 866 WMELSPLDVMQMIGRAGRPQYDQQ-GEGIIITGYSKLQYYLRLMNEQLPIESQFISKLAD 924
Query: 709 NLNAEISLGTVTNVEEGVKWLGYTYMFVRMKQNPFTYGIDWEEIRNDPQLYEKRRQIIIT 768
LNAEI LGT+ N E WLGYTY++VRM +NP YG+ + + D L E+R +I +
Sbjct: 925 QLNAEIVLGTIQNAREACHWLGYTYLYVRMVRNPTLYGVSPDALAKDLLLEERRADLIHS 984
Query: 769 AARRLHSLQMIVFDEVSMHFIPKDLGRIASEFYLLNESVEIFNQVANPRATEADVLAMIS 828
AA L +I +D S HF DLGRIAS +Y+ + ++ +N+ P + ++ + S
Sbjct: 985 AATILDKNNLIKYDRKSGHFQVTDLGRIASYYYISHGTIAAYNENLKPTMNDIELCRLFS 1044
Query: 829 MSSEFDSIKFREEESNELNKLLDCAVECQISGDVDSSPGKTNILLQAYVSQSRINDSALN 888
+S EF + R++E EL KLLD V + ++ K N+LLQ Y+S+ ++ +L
Sbjct: 1045 LSEEFKYVTVRQDEKMELAKLLD-RVPIPVKETLEDPSAKINVLLQVYISKLKLEGLSLT 1103
Query: 889 SDANYIAQNSARICRALLLIGINRRWGTFSKVMLDICKSIEKRMWAFDHPLCQFD-LPDT 947
SD YI Q++ R+ RA+ I + R W S+ L++ K + KRMW+ PL QF +P
Sbjct: 1104 SDMVYITQSAGRLLRAIFEIVLKRGWAQLSQKALNLSKMVGKRMWSVQTPLWQFPGIPKE 1163
Query: 948 ILRNIKAKNPSXXXXXXXXXXXXXXXVHNQKMGGKLYRIISRFPRVDIDAEIFPITTNVM 1007
IL ++ + + N KMG L++ I +FP++ + A + PI+ +V+
Sbjct: 1164 ILMKLEKNDLVWERYYDLSSQELGELICNPKMGRPLHKYIHQFPKLKLAAHVQPISRSVL 1223
Query: 1008 RVHISLLPNFEWDYHVHGDAQFFWVFVEESNQSSILHFEKFILNKRQLSNPHEMDFMIPL 1067
+V +++ P+F WD + + FW+ VE+++ ILH E F+ KR + H ++F +P+
Sbjct: 1224 QVELTVTPDFHWDDKANKYVEPFWIIVEDNDGEKILHHEYFLFKKRVIDEDHTLNFTVPI 1283
Query: 1068 SDPLPPQVIVKVVSDTWIGCESAHTISFQHLIRPHNETLQTRLQKLNPLPTSALKNPLVE 1127
S+P+PPQ ++VVSD W+ + +SF+HLI P T L L PLP AL+NP E
Sbjct: 1284 SEPIPPQYFIRVVSDKWLDSPTVLPVSFRHLILPEKYPPPTELLDLQPLPVMALRNPSYE 1343
Query: 1128 SIYP-FKYFNPMQTMVFHTLYHSNVSTFVGSPTGSGKTVVAELAIWHAFRDYPGS--KVV 1184
++Y FK+FNP+QT VF LY+++ + V +PTGSGKT+ AE AI + P S +VV
Sbjct: 1344 TLYQDFKHFNPVQTQVFTVLYNTSDNVVVAAPTGSGKTICAEFAILRNHLEGPDSAMRVV 1403
Query: 1185 YIAPMKALVRERVNDWRKRITPVTGDRIVELTGDSVPDPQDIKDATIVITTPEKFDGISR 1244
YIAP++A+ +E+ DW K+ G R+VELTG+++ D + ++ I+I+TPEK+D +SR
Sbjct: 1404 YIAPLEAIAKEQFRDWEKKFGKGLGLRVVELTGETLLDLKLLEKGQIIISTPEKWDALSR 1463
Query: 1245 NWQTRKFVQNVSLIIMDEIHLLASDRGPILEMIVSRMNYVSSQTKKPIRLLGMSTAVSNA 1304
W+ RK++Q VSL I+DE+HL+ G +LE+IVSRM Y+SSQ IR++ +ST+++NA
Sbjct: 1464 RWKQRKYIQQVSLFIVDELHLIGGQGGQVLEVIVSRMRYISSQVGNKIRIVALSTSLANA 1523
Query: 1305 FDMASWLGVKGNGLYNFPSSVRPVPLKMYIDGFPDNLNFCPLMKTMNKPAFMAIKQHSP- 1363
D+ W+G G++NFP +VRPVPL+++I G D L+F M+ M KP + AI QH+
Sbjct: 1524 KDLGEWIGASSCGVFNFPPNVRPVPLEIHIHGV-DILSFEARMQAMTKPTYTAIVQHAKN 1582
Query: 1364 EKPVLLFVASRRQTRLTALDLIHLCGMEDNPRRFLHIDDEEELQYYISKVSDDTLKLSLQ 1423
+KP ++FV +R+ RLTA+DLI M++ + + EEL+ ++ ++ ++TLK +L+
Sbjct: 1583 KKPAIVFVPTRKHVRLTAVDLIAYSHMDNMKSPDFLLGNLEELEPFLIQICEETLKETLR 1642
Query: 1424 FGIGLHHAGLIESDRAISHELFLRSKIQILVATSTLAWGVNLPAHLVIIKGTQFFDAKIE 1483
GIG H GL D+ I +LF +IQ+ V +S+L WG L AHLV++ GT F+D +
Sbjct: 1643 HGIGYLHEGLSNLDQEIVTQLFEAGRIQVCVMSSSLCWGTPLKAHLVVVMGTHFYDGREN 1702
Query: 1484 GYRDMDLTDILQMMGRAGRPAYDTSGTAIVYTKESKKMFYKHFLNVGFPVESSLHKVLDD 1543
+ D ++++LQMMGR RP D +G +++ +K +YK FL PVES L L D
Sbjct: 1703 SHSDYPISNLLQMMGRGSRPLLDDAGKCVIFCHAPRKEYYKKFLYEALPVESHLQHFLHD 1762
Query: 1544 HMGAEIASGTISTKQEALDFLNWTFLFRRAHHNPTYYGINDDTSTSGINKYLSDLVNNTL 1603
+ AE+ + I KQ+A+D+L W+F++RR NP YY + S ++ +LS+LV NTL
Sbjct: 1763 NFNAEVVARVIENKQDAVDYLTWSFMYRRLPQNPNYYNLL-GVSHRHLSDHLSELVENTL 1821
Query: 1604 DNLKESRCVEIYG-TNXXXXXXXXXXXXXXXXHKTIRSLLKQINSNASFQDVLKWLSLAV 1662
+L+ S+C+EI + + TI + S + +L+ L+ A
Sbjct: 1822 SDLEVSKCIEIDNELDLSPLNLGMIASYYYINYTTIERFSSLLASKTKMKGLLEILTSAS 1881
Query: 1663 EYNELPVRNGEIIMNVEMSAQSRYSIESTFIDEFELPMWDPHVKAFLLLQAYLSRAELPI 1722
EY+ +P+R GE + R+S ++ DP VK LLQA+ SR ++
Sbjct: 1882 EYDLIPIRPGEEDAVRRLINHQRFSFQNP-------RCTDPRVKTSALLQAHFSRQKIS- 1933
Query: 1723 VDYHQDTISVLDQSLRILQAYVDVAAELGYFNTVMTLIKAMQCVKQGYWYEDDPISALPG 1782
+ D VL + R+LQA VDV + G N + ++ Q V QG W D + LP
Sbjct: 1934 GNLVMDQCEVLLSATRLLQAMVDVISSNGCLNLALLAMEVSQMVTQGMWDRDSMLLQLP- 1992
Query: 1783 AHLKRDDRIEFGDDGWPLPDNGYKMSLDSLARLQDDNGAKNKVKNIMSRQYHVTPDHQKR 1842
H +D ++ P N + D L ++DD +++
Sbjct: 1993 -HFTKDLAKRCHEN----PGNNIETIFD-LVEMEDD---------------------KRQ 2025
Query: 1843 MLREISRLPILDNIVFTSQTSNESLVLKATHHNRVP--KEFS-----------------V 1883
L ++S +LD F ++ N L + N V K+ + V
Sbjct: 2026 ELLQMSDAQLLDIARFCNRFPNIDLTYEIVGSNEVSPGKDITLQVLLERDMEGRTEVGPV 2085
Query: 1884 YCAKYPKTQRELWFAIA--YQNDELIMLKRCQPRLGPNGKGLLSFDFVVPEDIRGKELDF 1941
+YPKT+ E W+ + + ++L+ +K R+ K + +F VP + K
Sbjct: 2086 DAPRYPKTKEEGWWLVVGEAKTNQLMAIK----RISLQRKAQVKLEFAVPTETGEKSYTL 2141
Query: 1942 VLVSDA 1947
+ D+
Sbjct: 2142 YFMCDS 2147
>CE21971 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily
Length = 2145
Score = 1093 bits (2827), Expect = 0.0
Identities = 623/1707 (36%), Positives = 985/1707 (57%), Gaps = 73/1707 (4%)
Query: 120 QLIELLRNNENTGTADQDLFDYLGAENIELISFLIENQEILKHTPIEHMSNSDTYEGNRF 179
++I +L+N + A+ L LG + E I L +N+ ++ + + +N E R
Sbjct: 285 EVIGILKNAADDRDAENQLVLLLGFDQFEFIKCLRQNRLMILYCTLLRQAN----EKERL 340
Query: 180 MTEEDMRR--------------------QVLKN-REKGKNAKLATAQRKVKYPHVFRQSE 218
E+DMR QV K+ R+ K+ K ATA + +
Sbjct: 341 QIEDDMRSRPELHPILALLQETDEGSVVQVEKSKRDAEKSKKAATAANEA----ISAGQW 396
Query: 219 DAGSSMLSFAGQKFA------------LPAGSMRYTFQTHEEITIPCAVPKRKFD-IPLV 265
AG ML F+ LP GS R +++EEI +P P+ + LV
Sbjct: 397 QAGRKMLDLNDLTFSQGSHLMSNKRCELPDGSYRRQKKSYEEIHVPALKPRPFAEGEKLV 456
Query: 266 KVSDLDEYCRKVFE-YDYLNKVQSLVYPVAYNTNGNMLICAPTGAGKTDIALLTILNTIK 324
VS+L ++ + F+ Y LN++QS + A + ++L+CAPTGAGKT++ALLT+L I
Sbjct: 457 SVSELPKWAQPAFDGYKSLNRIQSRLCDSALRSKEHLLLCAPTGAGKTNVALLTMLQEIG 516
Query: 325 QFSVINEEGGFDIEYDDFKIIYVAPLKALAAEITDKFARKLSVFDVKVRELTGDMQLTKR 384
+ E+G ++ D+FKI+Y+AP+K+L E+ F+++L+ F + V E+TGD Q++K
Sbjct: 517 NH--LAEDGS--VKLDEFKIVYIAPMKSLVQEMVGSFSKRLAPFGITVGEMTGDAQMSKE 572
Query: 385 EILETQVIVTTPEKWDVVTRKASGDNDLTSKVKLLILDEVHLLHEDRGSVIESLVARTLR 444
+ + TQVIV TPEK+DVVTRK G+ V+LLI+DE+HLLH+DRG V+ES+V RT+R
Sbjct: 573 QFMATQVIVCTPEKYDVVTRKG-GERAYNQMVRLLIIDEIHLLHDDRGPVLESIVVRTIR 631
Query: 445 QVESSQTMIRILGLSATLPNFVDVADFLGVNRNVGMFYFDQSFRPKALEQHLIGCRGKAG 504
Q+E + R++GLSATLPN+ DVA FL V + +FD S+RP LEQ IG K
Sbjct: 632 QMEQNHDECRLVGLSATLPNYQDVATFLRVKPE-HLHFFDNSYRPVPLEQQYIGVTEKKA 690
Query: 505 SKQCRENTDKVAYEKAVEMMKLGNQVMIFVHSRKDTVKTARTLISMARDNYEMDLFT-SN 563
K+ + ++V Y+K +E +QV++FVHSRK+T KTA+ + + + F
Sbjct: 691 LKRFQA-MNEVVYDKIMEHAGK-SQVLVFVHSRKETAKTAKAIRDACLEKDTLSAFMREG 748
Query: 564 DASVTIFQKELSKHKDKDLKELFQSGFGVHHAGMSRSDRNITEKMFKSGAVNVLVCTATL 623
AS I + E + K+ DLK+L GF +HHAGM+R DR + E +F + VL TATL
Sbjct: 749 SASTEILRTEAEQAKNLDLKDLLPYGFAIHHAGMNRVDRTLVEDLFADRHIQVLFSTATL 808
Query: 624 AWGVNLPADCVIIKGTQVYDSKKGGYTDLGISDVIQIFGRAGRPGFGSDYGTAYLCTSND 683
AWGVNLPA VIIKGTQ+Y+ +KG +T+LG D++Q+ GRAGRP + D G L T++
Sbjct: 809 AWGVNLPAHTVIIKGTQIYNPEKGRWTELGALDIMQMLGRAGRPQY-DDRGEGILITNHS 867
Query: 684 RLDHYVDLITQQHPIESRLGAKVVDNLNAEISLGTVTNVEEGVKWLGYTYMFVRMKQNPF 743
L +Y+ L+ QQ P+ES++ +++ D LNAE+ LGTV++V E WLGYT++FVRM +NP
Sbjct: 868 ELQYYLSLMNQQLPVESQMVSRLTDMLNAEVVLGTVSSVSEATNWLGYTFLFVRMLKNPT 927
Query: 744 TYGIDWEEIRNDPQLYEKRRQIIITAARRLHSLQMIVFDEVSMHFIPKDLGRIASEFYLL 803
YGI E+ R DP L ++R +I TA L +I +D+ S +LGRIAS FY
Sbjct: 928 LYGITHEQARADPLLEQRRADLIHTACVLLDKAGLIKYDKRSGIIQATELGRIASHFYCT 987
Query: 804 NESVEIFNQVANPRATEADVLAMISMSSEFDSIKFREEESNELNKLLDCAVECQISGDVD 863
ES++ +N++ ++ D+ + SMSSEF + R+EE EL K+ + A I ++D
Sbjct: 988 YESMQTYNKLLVETCSDIDLFRIFSMSSEFKLLSVRDEEKLELQKMAEHA-PIPIKENLD 1046
Query: 864 SSPGKTNILLQAYVSQSRINDSALNSDANYIAQNSARICRALLLIGINRRWGTFSKVMLD 923
+ KTN+LLQAY+SQ ++ AL +D ++AQ++ R+ RAL I + R W ++ +L
Sbjct: 1047 EASAKTNVLLQAYISQLKLEGFALQADMVFVAQSAGRLFRALFEIVLWRGWAGLAQKVLT 1106
Query: 924 ICKSIEKRMWAFDHPLCQFD-LPDTILRNIKAKNPSXXXXXXXXXXXXXXXVHNQKMGGK 982
+CK + +R W +PL QF +P ++R+I KN S + KMG
Sbjct: 1107 LCKMVTQRQWGSLNPLHQFKKIPSEVVRSIDKKNYSFDRLYDLDQHQLGDLIKMPKMGKP 1166
Query: 983 LYRIISRFPRVDIDAEIFPITTNVMRVHISLLPNFEWDYHVHGDAQFFWVFVEESNQSSI 1042
L++ I +FP++++ I PIT MR+ +++ P+F+WD VHG A+ FW+F+E+++ I
Sbjct: 1167 LFKFIRQFPKLEMTTLIQPITRTTMRIELTITPDFKWDEKVHGSAEGFWIFIEDTDGEKI 1226
Query: 1043 LHFEKFILNKRQLSNPHEMDFMIPLSDPLPPQVIVKVVSDTWIGCESAHTISFQHLIRPH 1102
LH E F+L ++ S+ H + ++P+ DP+PP V++VSD WIG E+ ISF+HLI P
Sbjct: 1227 LHHEFFLLKQKFCSDEHVVKMIVPMFDPMPPLYYVRIVSDRWIGAETVLPISFRHLILPE 1286
Query: 1103 NETLQTRLQKLNPLPTSALKNPLVESIYP---FKYFNPMQTMVFHTLYHSNVSTFVGSPT 1159
T L L PLP SA+ N ++++ FK FNP+QT VF T++ SN + V +P
Sbjct: 1287 KYPPPTELLDLQPLPISAVTNKEFQTVFAESGFKVFNPIQTQVFRTVFESNENVIVCAPN 1346
Query: 1160 GSGKTVVAELAIWHAFRDYPGSKVVYIAPMKALVRERVNDWRKRITPVTGDRIVELTGDS 1219
GSGKT +AELA+ F + P +K VYI PM+ + + DW++R+ P G IV LTG+
Sbjct: 1347 GSGKTAIAELAVLRHFENTPEAKAVYITPMEDMATKVYADWKRRLEPAIGHTIVLLTGEQ 1406
Query: 1220 VPDPQDIKDATIVITTPEKFDGISRNWQTRKFVQNVSLIIMDEIHLLASDRGPILEMIVS 1279
D + + ++I+TPE++D ISR W+ RK VQNV L I D++H++ + G + E++ S
Sbjct: 1407 TMDLKLAQRGQLIISTPERWDNISRRWKQRKSVQNVKLFIADDLHMIGASNGAVFEVVCS 1466
Query: 1280 RMNYVSSQTKKPIRLLGMSTAVSNAFDMASWLGVKGNGLYNFPSSVRPVPLKMYIDGFPD 1339
R Y+SSQ + +R++ +S++++NA D+ WLG + +NF S RPVPL + I F
Sbjct: 1467 RTRYISSQLESAVRVVALSSSLTNARDLGMWLGCSASATFNFMPSTRPVPLDLEIKSFNL 1526
Query: 1340 NLNFCPLMKTMNKPAFMAIKQHSPE---KPVLLFVASRRQTRLTALDLIHLCGMEDNPRR 1396
+ N M +P + AI +H+ + KP L+FV RRQTR A+ L+ + + P+R
Sbjct: 1527 SHN-ASRFAAMERPVYQAICRHAGKLEPKPALVFVPVRRQTRPVAVALLTMALADGAPKR 1585
Query: 1397 FLHI-DDEEELQYYISKVSDDTLKLSLQFGIGLHHAGLIESDRAISHELFLRSKIQILVA 1455
FL + + ++ Q ++ + D++L+ S+ G+G H G D I +LF + IQ+ V
Sbjct: 1586 FLRLAEHDDTFQALLADIEDESLRESVSCGVGFLHEGTAPKDVHIVQQLFESNAIQVCVV 1645
Query: 1456 TSTLAWGVNLPAHLVIIKGTQFFDAKIEGYRDMDLTDILQMMGRAGRPAYDTSGTAIVYT 1515
+ + + + A+LV++ TQF++ K Y D + D+L M+G A RP D+ +V
Sbjct: 1646 PRGMCYQIEMSAYLVVVMDTQFYNGKYHVYEDYPIADMLHMVGLANRPILDSDAKCVVMC 1705
Query: 1516 KESKKMFYKHFLNVGFPVESSLHKVLDDHMGAEIASGTISTKQEALDFLNWTFLFRRAHH 1575
+ SK+ +YK FL PVES L L DH AEI + TI KQ+A+D+L WT L+RR
Sbjct: 1706 QTSKRAYYKKFLCDPLPVESHLDHCLHDHFNAEIVTKTIENKQDAIDYLTWTLLYRRMTQ 1765
Query: 1576 NPTYYGINDDTSTSGINKYLSDLVNNTLDNLKESRCVEIYG-TNXXXXXXXXXXXXXXXX 1634
NP YY + T+ ++ LS+LV TL +L+ S+C+ + +
Sbjct: 1766 NPNYYNL-QGTTHRHLSDALSELVELTLKDLENSKCIAVKDEMDTVSLNLGMIASYYYIS 1824
Query: 1635 HKTIRSLLKQINSNASFQDVLKWLSLAVEYNELPVRNGEIIMNVEMSAQSRYSIESTFID 1694
++TI + + +++ +S + E+ +P+R+ E ++ +++ + +++
Sbjct: 1825 YQTIELFSMSLKEKTKTRALIEIISASSEFGNVPMRHKEDVILRQLAERLPGQLKNQ--- 1881
Query: 1695 EFELPMWDPHVKAFLLLQAYLSRAELPIVDYHQDTISVLDQSLRILQAYVDVAAELGYFN 1754
DPHVK LL+ A+LSR +L + ++DT ++ ++ R++QA VDV + G+ +
Sbjct: 1882 ----KFTDPHVKVNLLIHAHLSRVKL-TAELNKDTELIVLRACRLVQACVDVLSSNGWLS 1936
Query: 1755 TVMTLIKAMQCVKQGYWYEDDPISALP 1781
+ ++ Q + Q + + + LP
Sbjct: 1937 PAIHAMELSQMLTQAMYSNEPYLKQLP 1963
Score = 235 bits (600), Expect = 5e-61
Identities = 194/840 (23%), Positives = 395/840 (46%), Gaps = 54/840 (6%)
Query: 280 YDYLNKVQSLVYPVAYNTNGNMLICAPTGAGKTDIALLTILNTIKQFSVINEEGGFDIEY 339
+ N +Q+ V+ + +N N+++CAP G+GKT IA L +L +
Sbjct: 1319 FKVFNPIQTQVFRTVFESNENVIVCAPNGSGKTAIAELAVLRHFENTP------------ 1366
Query: 340 DDFKIIYVAPLKALAAEITDKFARKLS-VFDVKVRELTGDMQLTKREILETQVIVTTPEK 398
+ K +Y+ P++ +A ++ + R+L + LTG+ + + Q+I++TPE+
Sbjct: 1367 -EAKAVYITPMEDMATKVYADWKRRLEPAIGHTIVLLTGEQTMDLKLAQRGQLIISTPER 1425
Query: 399 WDVVTRKASGDNDLTSKVKLLILDEVHLLHEDRGSVIESLVARTLRQVESSQTMIRILGL 458
WD ++R+ + + VKL I D++H++ G+V E + +RT ++ +R++ L
Sbjct: 1426 WDNISRRWKQRKSVQN-VKLFIADDLHMIGASNGAVFEVVCSRTRYISSQLESAVRVVAL 1484
Query: 459 SATLPNFVDVADFLGVNRNVGMFYFDQSFRPKALEQHLIGCRGKAGSKQCRENTDKVAYE 518
S++L N D+ +LG + + F F S RP L+ + + + V
Sbjct: 1485 SSSLTNARDLGMWLGCSASA-TFNFMPSTRPVPLDLEIKSFNLSHNASRFAAMERPVYQA 1543
Query: 519 KAVEMMKLGNQ-VMIFVHSRKDTVKTARTLISMARDNYEMDLFTSNDASVTIFQKELSKH 577
KL + ++FV R+ T A L++MA + F FQ L+
Sbjct: 1544 ICRHAGKLEPKPALVFVPVRRQTRPVAVALLTMALADGAPKRFLRLAEHDDTFQALLADI 1603
Query: 578 KDKDLKELFQSGFGVHHAGMSRSDRNITEKMFKSGAVNVLVCTATLAWGVNLPADCVIIK 637
+D+ L+E G G H G + D +I +++F+S A+ V V + + + + A V++
Sbjct: 1604 EDESLRESVSCGVGFLHEGTAPKDVHIVQQLFESNAIQVCVVPRGMCYQIEMSAYLVVVM 1663
Query: 638 GTQVYDSKKGGYTDLGISDVIQIFGRAGRPGFGSDYGTAYLCTSNDRLDHYVDLITQQHP 697
TQ Y+ K Y D I+D++ + G A RP SD +C ++ R +Y + P
Sbjct: 1664 DTQFYNGKYHVYEDYPIADMLHMVGLANRPILDSDAKCVVMCQTSKRA-YYKKFLCDPLP 1722
Query: 698 IESRLGAKVVDNLNAEISLGTVTNVEEGVKWLGYTYMFVRMKQNPFTYGIDWEEIRNDPQ 757
+ES L + D+ NAEI T+ N ++ + +L +T ++ RM QNP Y + R+
Sbjct: 1723 VESHLDHCLHDHFNAEIVTKTIENKQDAIDYLTWTLLYRRMTQNPNYYNLQGTTHRH--- 1779
Query: 758 LYEKRRQIIITAARRLHSLQMIVFDEVSMHFIPKDLGRIASEFYLLNESVEIFNQVANPR 817
L + +++ + L + + I + M + +LG IAS +Y+ +++E+F+ +
Sbjct: 1780 LSDALSELVELTLKDLENSKCIAVKD-EMDTVSLNLGMIASYYYISYQTIELFSMSLKEK 1838
Query: 818 ATEADVLAMISMSSEFDSIKFREEESNELNKLLDCAVECQISGDVDSSPG-KTNILLQAY 876
++ +IS SSEF ++ R +E L +L + + Q+ + P K N+L+ A+
Sbjct: 1839 TKTRALIEIISASSEFGNVPMRHKEDVILRQLAE-RLPGQLKNQKFTDPHVKVNLLIHAH 1897
Query: 877 VSQSRINDSALNSDANYIAQNSARICRALLLIGINRRWGTFSKVMLDICKSIEKRMWAFD 936
+S+ ++ + LN D I + R+ +A + + + W + + +++ + + + M++ +
Sbjct: 1898 LSRVKLT-AELNKDTELIVLRACRLVQACVDVLSSNGWLSPAIHAMELSQMLTQAMYSNE 1956
Query: 937 HPLCQFD-LPDTILRNIKAKNPSXXXXXXXXXXXXXXXVHNQKMGGKLY---RIISRFPR 992
L Q +L KAK + + Q G +L R + +P
Sbjct: 1957 PYLKQLPHCSAALLERAKAKEVTSVFELLELENDDRSDIL-QMEGAELADVARFCNHYPS 2015
Query: 993 VDIDAEIFP--ITTNVMRVHISLLPNFEWDYHVHGDA--------------QFFWVFVEE 1036
+++ E+ +T+N ++ L + E D + G A + +W+ + +
Sbjct: 2016 IEVATELENDVVTSND---NLMLAVSLERDNDIDGLAPPVVAPLFPQKRKEEGWWLVIGD 2072
Query: 1037 SNQSSILHFEKFILNKRQLSNPHEMDFMIPLSDPLPPQVIVKVVSDTWIGCESAHTISFQ 1096
S +++L ++ ++N++ + ++DF P P + + +SD+++G + ++F+
Sbjct: 2073 SESNALLTIKRLVINEK---SSVQLDFAAP--RPGHHKFKLFFISDSYLGADQEFDVAFK 2127
>SPAC9.03c [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily
Length = 2176
Score = 1039 bits (2687), Expect = 0.0
Identities = 585/1575 (37%), Positives = 930/1575 (58%), Gaps = 46/1575 (2%)
Query: 221 GSSMLSFAGQKFALPAGSMRYTFQTHEEITIPCAVPKRKF---DIPLVKVSDLDEYCRKV 277
GS ++S K LP GS R T + +EEI +P P + D LVK+ +L E+ +
Sbjct: 458 GSRLMSNKAVK--LPEGSFRRTGKGYEEIHVPA--PNKAVLGADERLVKIKELPEWSHQA 513
Query: 278 F-EYDYLNKVQSLVYPVAYNTNGNMLICAPTGAGKTDIALLTILNTIKQFSVINEEGGFD 336
F LN++QS +YP+A+ T+ N+L+CAPTGAGKT++A+L ILN +++ + E+ F+
Sbjct: 514 FLNTQSLNRIQSHLYPIAFGTDENILLCAPTGAGKTNVAMLCILNELQKH--LREDLSFN 571
Query: 337 IEYDDFKIIYVAPLKALAAEITDKFARKLSVFDVKVRELTGDMQLTKREILETQVIVTTP 396
++ +FKI+Y+APLKAL E+ + F+++L+ ++++V ELTGD QLTK++I ETQ+IVTTP
Sbjct: 572 LQ--NFKIVYIAPLKALVQEMVNNFSKRLTPYNIRVAELTGDSQLTKQQISETQIIVTTP 629
Query: 397 EKWDVVTRKASGDNDLTSKVKLLILDEVHLLHEDRGSVIESLVARTLRQVESSQTMIRIL 456
EKWD++TRKA+ D + V+L+I+DEVHLLH++RG V+ES+VAR R E + +R++
Sbjct: 630 EKWDIITRKAN-DLSYVNLVRLVIIDEVHLLHDERGPVLESIVARIFRHQEETLEQVRLV 688
Query: 457 GLSATLPNFVDVADFLGVNRNVGMFYFDQSFRPKALEQHLIGCRGKAGSKQCRENTDKVA 516
GLSATLPN+ DVA FL V+ G+FYFD ++RP L+Q IG K K+ + T++
Sbjct: 689 GLSATLPNYTDVASFLHVDPKKGLFYFDSTYRPCPLKQEFIGITEKTPFKRM-QTTNEAC 747
Query: 517 YEKAVEMMKLGNQVMIFVHSRKDTVKTARTLISMARDNYEMD-LFTSNDASVTIFQKELS 575
YEK ++ NQV+IFVHSRK+T KTAR + A + + L S+ AS I + E
Sbjct: 748 YEKVMQHAGK-NQVLIFVHSRKETAKTARFIRDKALEEETIGHLLRSDAASREILRAEAD 806
Query: 576 KHKDKDLKELFQSGFGVHHAGMSRSDRNITEKMFKSGAVNVLVCTATLAWGVNLPADCVI 635
D++LK+L GF +HHAGM R DR +E +F G + VLV TATLAWGVNLPA VI
Sbjct: 807 STSDENLKDLLPYGFAIHHAGMRREDRQTSEDLFADGTIQVLVSTATLAWGVNLPAHTVI 866
Query: 636 IKGTQVYDSKKGGYTDLGISDVIQIFGRAGRPGFGSDYGTAYLCTSNDRLDHYVDLITQQ 695
IKGTQVY +KG +T+L DV+Q+ GRAGRP F + YG + T++ L +Y+ L+ QQ
Sbjct: 867 IKGTQVYSPEKGIWTELSPQDVLQMLGRAGRPQFDT-YGEGIIITAHSELQYYLSLMNQQ 925
Query: 696 HPIESRLGAKVVDNLNAEISLGTVTNVEEGVKWLGYTYMFVRMKQNPFTYGIDWEEIRND 755
PIES+ ++ D LNAE+SLGTV ++E+GV WLGYTY++VRM ++P Y + E +D
Sbjct: 926 LPIESQFMRRLADCLNAEVSLGTVRSIEDGVDWLGYTYLYVRMLRSPALYSVG-PEYDDD 984
Query: 756 PQLYEKRRQIIITAARRLHSLQMIVFDEVSMHFIPKDLGRIASEFYLLNESVEIFNQVAN 815
L +KR ++ +AA L +++V++ S +LG++A+ +Y+ + S+ I+N++
Sbjct: 985 KYLVQKRADLLHSAAILLEKCKLLVYNRQSGTLTATELGKVAASYYVTHNSMAIYNRLLM 1044
Query: 816 PRATEADVLAMISMSSEFDSIKFREEESNELNKLLDCAVECQISGDVDSSPGKTNILLQA 875
+ ++ + S S EF I REEE EL KLL+ V I +D K N LLQ+
Sbjct: 1045 QTTSFIELFRVFSFSDEFKHIPVREEEKVELAKLLE-RVPIPIRERLDEPAAKINALLQS 1103
Query: 876 YVSQSRINDSALNSDANYIAQNSARICRALLLIGINRRWGTFSKVMLDICKSIEKRMWAF 935
Y+S+ R++ AL +D Y+ Q++ RI RA+ I + R W + + + LD CK IEKR+W
Sbjct: 1104 YISRQRLDGFALVADMVYVTQSAGRIMRAIFEISLRRGWSSVATLSLDTCKMIEKRLWPT 1163
Query: 936 DHPLCQF-DLPDTILRNIKAKNPSXXXXXXXXXXXXXXXVHNQKMGGKLYRIISRFPRVD 994
PL QF + P ++R ++ K V K G ++Y ++ FPR+
Sbjct: 1164 MSPLRQFPNCPSEVIRRVEKKEFPWQRYFDLDPAELGELVGVPKEGRRVYNMVQSFPRLS 1223
Query: 995 IDAEIFPITTNVMRVHISLLPNFEWDYHVHGDAQFFWVFVEESNQSSILHFEKFILNKRQ 1054
++A + PIT +++RV + + F WD H+ G ++ FW+ VE+ + +LH+E+F L K+
Sbjct: 1224 VEAHVQPITRSLVRVELVINSQFNWDDHLSGTSEAFWILVEDVDGDRLLHYEQFFLLKKY 1283
Query: 1055 LSNPHEMDFMIPLSDPLPPQVIVKVVSDTWIGCESAHTISFQHLIRPHNETLQTRLQKLN 1114
+ H ++F +PL +PLPP +K+VSD W+ + +SFQ LI P T L L
Sbjct: 1284 KDDEHIVNFTVPLLEPLPPCYFIKIVSDRWLHSITKVPLSFQRLIMPEKFPAPTPLLDLQ 1343
Query: 1115 PLPTSALKNPLVESIYP-FKYFNPMQTMVFHTLYHSNVSTFVGSPTGSGKTVVAELAIWH 1173
P S+L NP S+YP FK+FN +QT VF+++Y +N S F+G+P GSGKTV AELA+ H
Sbjct: 1344 NAPVSSLNNPSFISLYPNFKFFNKIQTQVFNSVYKTNDSVFIGAPNGSGKTVCAELALLH 1403
Query: 1174 AFRDYPGSKVVYIAPMKALVRERVNDWRKRITPV-TGDRIVELTGDSVPDPQDIKDATIV 1232
+ VYIAP++ +V R +W + + + G +V+LTG+ D + I+ A ++
Sbjct: 1404 HWSQEDYGTAVYIAPIQEIVDRRYEEWYGKFSDLGDGKVLVKLTGERSQDLKLIQVADLI 1463
Query: 1233 ITTPEKFDGISRNWQTRKFVQNVSLIIMDEIHLLASDRGPILEMIVSRMNYVSSQTKKPI 1292
TP ++D +S+ W++ + +Q V I DE+ LL GP+ E+++SR+ Y++ Q +K I
Sbjct: 1464 FCTPSQWDSLSKRWRSMRSIQKVDFYICDELQLLGGFYGPLYEIVISRIRYMAVQLEKNI 1523
Query: 1293 RLLGMSTAVSNAFDMASWLGVKGNGLYNFPSSVRPVPLKMYIDGFPDNLNFCPLMKTMNK 1352
R++G+S +V+NA D+ WLG ++NF RP PL +++ F +F LM M+K
Sbjct: 1524 RVVGLSVSVANARDLGEWLGTSPQCIFNFSPKDRPNPLTIHLQSF-SITHFPSLMLAMSK 1582
Query: 1353 PAFMAIKQH-SPEKPVLLFVASRRQTRLTALDLIHLCGMEDNPRRFLHIDDEEELQYYIS 1411
P + ++K S K ++F R+ + A DL+ +++ F +++E +
Sbjct: 1583 PIYRSLKNFISQRKSTIVFTPDRKVAKQLAFDLVTFSMADEDEYLFSLMENEA-----FN 1637
Query: 1412 KVSDDTLKLSLQFGIGLHHAGLIESDRAISHELFLRSKIQILVATSTLAWGVNLPAHLVI 1471
KV D L+ SL+ GI +D+ I L+ I++L+A+ + + + ++ VI
Sbjct: 1638 KVEDAALQQSLKHGIAYISEITSSNDQNIVQYLYRHGLIKVLIASRDVIYSLKAKSNAVI 1697
Query: 1472 IKGTQFFDAKIEGYRDMDLTDILQMMGRAGRPAYDTSGTAIVYTKESKKMFYKHFLNVGF 1531
+ GTQ++D K Y D ++++LQM+G I+ T +KK +YK FLN
Sbjct: 1698 VMGTQYYDGKEHRYIDYPISELLQMLGFTASIGSSELSQVILMTVTTKKEYYKKFLNEPL 1757
Query: 1532 PVESSLHKVLDDHMGAEIASGTISTKQEALDFLNWTFLFRRAHHNPTYYGINDDTSTSGI 1591
P+ES L L D +EI++ TI +KQ+A+D+L W++++RR NP YYG+ D T S +
Sbjct: 1758 PMESHLQVWLHDAFVSEISTQTIESKQDAVDWLTWSYMYRRLVANPAYYGLQDITHES-V 1816
Query: 1592 NKYLSDLVNNTLDNLKESRCVEIYGTNXX--XXXXXXXXXXXXXXHKTIRSLLKQINSNA 1649
+++LSDLV T+++L E+R + + + + T+++ ++
Sbjct: 1817 SEFLSDLVETTMNDLSEARLITVDDEDDSCVALNLAMIASHYGITYITMQTFALSLSERT 1876
Query: 1650 SFQDVLKWLSLAVEYNELPVRNGEIIMNVEMSAQSRYSIESTFIDEFELPMWDPHVKAFL 1709
+ +L+ ++ A EY +LP+R E I+ + ++ + + + DPH K+F+
Sbjct: 1877 KMKGLLEIVTSAAEYEQLPIRKYEDIVLERIHSRLPVRLSNPNYE-------DPHTKSFI 1929
Query: 1710 LLQAYLSRAELP---IVDYHQDTISVLDQSLRILQAYVDVAAELGYFNTVMTLIKAMQCV 1766
LL A+ SR ELP ++D +L + +L A VD + G+ + ++ Q V
Sbjct: 1930 LLAAHFSRFELPPGLVIDQK----FILTRVHNLLGACVDTLSSEGHLIACIRPMEMSQMV 1985
Query: 1767 KQGYWYEDDPISALP 1781
Q W D P+ +P
Sbjct: 1986 TQALWDRDSPLKQIP 2000
Score = 339 bits (870), Expect = 2e-92
Identities = 226/723 (31%), Positives = 372/723 (51%), Gaps = 40/723 (5%)
Query: 1097 HLIRPHNETL--QTRLQKLNPLPTSALKNPLVESIYPFKYFNPMQTMVFHTLYHSNVSTF 1154
H+ P+ L RL K+ LP + ++ + N +Q+ ++ + ++ +
Sbjct: 485 HVPAPNKAVLGADERLVKIKELPEWSH-----QAFLNTQSLNRIQSHLYPIAFGTDENIL 539
Query: 1155 VGSPTGSGKTVVAELAIWHAFRDY---------PGSKVVYIAPMKALVRERVNDWRKRIT 1205
+ +PTG+GKT VA L I + + + K+VYIAP+KALV+E VN++ KR+T
Sbjct: 540 LCAPTGAGKTNVAMLCILNELQKHLREDLSFNLQNFKIVYIAPLKALVQEMVNNFSKRLT 599
Query: 1206 PVTGDRIVELTGDSVPDPQDIKDATIVITTPEKFDGISRNWQTRKFVQNVSLIIMDEIHL 1265
P R+ ELTGDS Q I + I++TTPEK+D I+R +V V L+I+DE+HL
Sbjct: 600 PYN-IRVAELTGDSQLTKQQISETQIIVTTPEKWDIITRKANDLSYVNLVRLVIIDEVHL 658
Query: 1266 LASDRGPILEMIVSRMNYVSSQTKKPIRLLGMSTAVSNAFDMASWLGVKGN-GLYNFPSS 1324
L +RGP+LE IV+R+ +T + +RL+G+S + N D+AS+L V GL+ F S+
Sbjct: 659 LHDERGPVLESIVARIFRHQEETLEQVRLVGLSATLPNYTDVASFLHVDPKKGLFYFDST 718
Query: 1325 VRPVPLKMYIDGFPDNLNFCPLMKTMNKPAFMAIKQHSPEKPVLLFVASRRQTRLTALDL 1384
RP PLK G + F M+T N+ + + QH+ + VL+FV SR++T TA +
Sbjct: 719 YRPCPLKQEFIGITEKTPF-KRMQTTNEACYEKVMQHAGKNQVLIFVHSRKETAKTARFI 777
Query: 1385 IHLCGMEDNPRRFLHID--DEEELQYYISKVSDDTLKLSLQFGIGLHHAGLIESDRAISH 1442
E+ L D E L+ SD+ LK L +G +HHAG+ DR S
Sbjct: 778 RDKALEEETIGHLLRSDAASREILRAEADSTSDENLKDLLPYGFAIHHAGMRREDRQTSE 837
Query: 1443 ELFLRSKIQILVATSTLAWGVNLPAHLVIIKGTQFFDAKIEGYRDMDLTDILQMMGRAGR 1502
+LF IQ+LV+T+TLAWGVNLPAH VIIKGTQ + + + ++ D+LQM+GRAGR
Sbjct: 838 DLFADGTIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGIWTELSPQDVLQMLGRAGR 897
Query: 1503 PAYDTSGTAIVYTKESKKMFYKHFLNVGFPVESSLHKVLDDHMGAEIASGTISTKQEALD 1562
P +DT G I+ T S+ +Y +N P+ES + L D + AE++ GT+ + ++ +D
Sbjct: 898 PQFDTYGEGIIITAHSELQYYLSLMNQQLPIESQFMRRLADCLNAEVSLGTVRSIEDGVD 957
Query: 1563 FLNWTFLFRRAHHNPTYYGINDDTSTSGINKYL----SDLVNNTLDNLKESRCVEIYGTN 1618
+L +T+L+ R +P Y + + +KYL +DL+++ L++ + + +Y
Sbjct: 958 WLGYTYLYVRMLRSPALYSVGPEYDD---DKYLVQKRADLLHSAAILLEKCKLL-VYNRQ 1013
Query: 1619 XXXXXXXXXXXXXXXXHKTIRSLL---KQINSNASFQDVLKWLSLAVEYNELPVRNGEII 1675
+ T S+ + + SF ++ + S + E+ +PVR E +
Sbjct: 1014 SGTLTATELGKVAASYYVTHNSMAIYNRLLMQTTSFIELFRVFSFSDEFKHIPVREEEKV 1073
Query: 1676 MNVEMSAQSRYSIESTFIDEFELPMWDPHVKAFLLLQAYLSRAELPIVDYHQDTISVLDQ 1735
++ + I +DE P K LLQ+Y+SR L D + V
Sbjct: 1074 ELAKLLERVPIPIRER-LDE-------PAAKINALLQSYISRQRLDGFALVADMVYVTQS 1125
Query: 1736 SLRILQAYVDVAAELGYFNTVMTLIKAMQCVKQGYWYEDDPISALPGAHLKRDDRIEFGD 1795
+ RI++A +++ G+ + + + +++ W P+ P + R+E +
Sbjct: 1126 AGRIMRAIFEISLRRGWSSVATLSLDTCKMIEKRLWPTMSPLRQFPNCPSEVIRRVEKKE 1185
Query: 1796 DGW 1798
W
Sbjct: 1186 FPW 1188
>YER172c [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily
Length = 2163
Score = 916 bits (2368), Expect = 0.0
Identities = 597/1826 (32%), Positives = 973/1826 (52%), Gaps = 123/1826 (6%)
Query: 37 KVDEELKKGTKRSDNRNKL---LVTSQDRNEWDDIFEEFANLSSDNLQSLIT-------- 85
K DEE + T+ S+N N L + ++D +E D + N N ++L
Sbjct: 215 KSDEE--EVTEMSNNANVLGGEINDNEDDDEEYDYNDVEVNSKKKNKRALPNIENDIIKL 272
Query: 86 SNHSASNAQA-QVYK-ELFRLLDNVDSD--FPRDQLLQQLIELLRNN-----ENTGTADQ 136
S+ SN ++ +Y + F L + S+ + ++Q L E + N+ N +Q
Sbjct: 273 SDSKTSNIESVPIYSIDEFFLQRKLRSELGYKDTSVIQDLSEKILNDIETLEHNPVALEQ 332
Query: 137 DLFDYLGAENIELISFLIENQEIL---------KHTPIEHMSNSDTYEGNRFMTEEDMRR 187
L D L ENI L F+++N+ + I ++ +G + E+ R
Sbjct: 333 KLVDLLKFENISLAEFILKNRSTIFWGIRLAKSTENEIPNLIEKMVAKGLNDLVEQYKFR 392
Query: 188 QVLKNR---EKGKNAKLATAQRKVKY-----PHVFRQSE---DAGSSMLSFAGQKFALPA 236
+ ++ + G + ++ ++ K+ P V + D S +++ K +LP
Sbjct: 393 ETTHSKRELDSGDDQPQSSEAKRTKFSNPAIPPVIDLEKIKFDESSKLMTVT--KVSLPE 450
Query: 237 GSMRYTFQTHEEITIPCAVPKRKFDIPLVKVSDLDEYCRKVF---EYDYLNKVQSLVYPV 293
GS + ++EI IP A K D L +++ L ++C++ F E LN +QS V+
Sbjct: 451 GSFKRVKPQYDEIHIP-APSKPVIDYELKEITSLPDWCQEAFPSSETTSLNPIQSKVFHA 509
Query: 294 AYNTNGNMLICAPTGAGKTDIALLTILNTIKQFSVINEEGGFDIEYDDFKIIYVAPLKAL 353
A+ + NMLICAPTG+GKT+IALLT+L + + + FKI+Y+APLKAL
Sbjct: 510 AFEGDSNMLICAPTGSGKTNIALLTVLKALSHHYNPKTK---KLNLSAFKIVYIAPLKAL 566
Query: 354 AAEITDKFARKLSVFDVKVRELTGDMQLTKREILETQVIVTTPEKWDVVTRKASGDNDLT 413
E +F R+L+ +KV ELTGD +L++++I ETQV+V+TPEKWD+ TR S + +
Sbjct: 567 VQEQVREFQRRLAFLGIKVAELTGDSRLSRKQIDETQVLVSTPEKWDITTRN-SNNLAIV 625
Query: 414 SKVKLLILDEVHLLHEDRGSVIESLVARTLRQVESSQTMIRILGLSATLPNFVDVADFLG 473
V+LLI+DE+HLLH+DRG V+ES+VART + Q RI+GLSATLPN+ DV FL
Sbjct: 626 ELVRLLIIDEIHLLHDDRGPVLESIVARTFWASKYGQEYPRIIGLSATLPNYEDVGRFLR 685
Query: 474 VNRNVGMFYFDQSFRPKALEQHLIGCRGKAGSKQCRENTDKVAYEKAVEMMKLGNQVMIF 533
V + G+FYFD SFRP L Q G + + K+ + D YEK +E + GNQ+++F
Sbjct: 686 VPKE-GLFYFDSSFRPCPLSQQFCGIKERNSLKKLKAMND-ACYEKVLESINEGNQIIVF 743
Query: 534 VHSRKDTVKTARTLISMARDNYEMDLFTSNDA-SVTIFQKELSKHKDKDLKELFQSGFGV 592
VHSRK+T +TA L + + T NDA S I + E + D L++L +SG G
Sbjct: 744 VHSRKETSRTATWLKNKFAEENITHKLTKNDAGSKQILKTEAANVLDPSLRKLIESGIGT 803
Query: 593 HHAGMSRSDRNITEKMFKSGAVNVLVCTATLAWGVNLPADCVIIKGTQVYDSKKGGYTDL 652
HHAG++RSDR+++E +F G + VLVCTATLAWGVNLPA VIIKGT VY +KG + L
Sbjct: 804 HHAGLTRSDRSLSEDLFADGLLQVLVCTATLAWGVNLPAHTVIIKGTDVYSPEKGSWEQL 863
Query: 653 GISDVIQIFGRAGRPGFGSDYGTAYLCTSNDRLDHYVDLITQQHPIESRLGAKVVDNLNA 712
DV+Q+ GRAGRP + + +G + T + +Y+ ++ QQ PIES+ +K+VDNLNA
Sbjct: 864 SPQDVLQMLGRAGRPRYDT-FGEGIIITDQSNVQYYLSVLNQQLPIESQFVSKLVDNLNA 922
Query: 713 EISLGTVTNVEEGVKWLGYTYMFVRMKQNPFTYGIDWEEIRNDPQLYEKRRQIIITAARR 772
E+ G + + V WL YTY++VRM +P Y + +I +D QL + R ++ +A
Sbjct: 923 EVVAGNIKCRNDAVNWLAYTYLYVRMLASPMLYKVP--DISSDGQLKKFRESLVHSALCI 980
Query: 773 LHSLQMIVFDEVSMHFIPKDLGRIASEFYLLNESVEIFNQVANPRATEADVLAMISMSSE 832
L +++++D + DLG IAS FY+ + S++++N+ + T+ D+ + SMS E
Sbjct: 981 LKEQELVLYDAENDVIEATDLGNIASSFYINHASMDVYNRELDEHTTQIDLFRIFSMSEE 1040
Query: 833 FDSIKFREEESNELNKLLDCAVECQISGDVDSSPGKTNILLQAYVSQSRINDSALNSDAN 892
F + R EE EL +LL+ A I D+D K N+LLQ+Y SQ + ALNSD
Sbjct: 1041 FKYVSVRYEEKRELKQLLEKA-PIPIREDIDDPLAKVNVLLQSYFSQLKFEGFALNSDIV 1099
Query: 893 YIAQNSARICRALLLIGINRRWGTFSKVMLDICKSIEKRMWAFDHPLCQFDL-PDTILRN 951
+I QN+ R+ RA+ I + R WG ++++L++CKS +MW + PL QF P +++
Sbjct: 1100 FIHQNAGRLLRAMFEICLKRGWGHPTRMLLNLCKSATTKMWPTNCPLRQFKTCPVEVIKR 1159
Query: 952 IKAKN-PSXXXXXXXXXXXXXXXVHNQKMGGKLYRIISRFPRVDIDAEIFPITTNVMRVH 1010
++A P + ++K G ++Y ++ RFP++ + PIT +VMR +
Sbjct: 1160 LEASTVPWGDYLQLETPAEVGRAIRSEKYGKQVYDLLKRFPKMSVTCNAQPITRSVMRFN 1219
Query: 1011 ISLLPNFEWDYHVHGDAQFFWVFVEESNQSSILHFEKFILNKRQLSNPHEMDFMIPLS-- 1068
I ++ ++ WD +VHG + F + +E+++ SIL+++ + + + + F L
Sbjct: 1220 IEIIADWIWDMNVHGSLEPFLLMLEDTDGDSILYYDVLFITPDIVGHEFTLSFTYELKQH 1279
Query: 1069 --DPLPPQVIVKVVSDTWIGCESAHTISFQHLIRPHNETLQTRLQKLNPLPTSALKNPLV 1126
+ LPP + ++S+ W E +SF P T L + + TS L N
Sbjct: 1280 NQNNLPPNFFLTLISENWWHSEFEIPVSFNGFKLPKKFPPPTPLLENISISTSELGNDDF 1339
Query: 1127 ESIYPFKYFNPMQTMVFHTLYHSNVSTFVGSPTGSGKTVVAELAIWHAFRDYPGSKVVYI 1186
++ FK FN +Q+ VF +LY+SN S FVGS G+GKT +AELA+ + +R G + VYI
Sbjct: 1340 SEVFEFKTFNKIQSQVFESLYNSNDSVFVGSGKGTGKTAMAELALLNHWRQNKG-RAVYI 1398
Query: 1187 APMKALVRERVNDWRKRITPVTGDRIVELTG-DSVPDPQDIKDATIVITTPEKFDGISRN 1245
P + ++DW KR + + G +I+ G D + + + + +++ TP +F+ +SR
Sbjct: 1399 NPSGEKIDFLLSDWNKRFSHLAGGKIINKLGNDPSLNLKLLAKSHVLLATPVQFELLSRR 1458
Query: 1246 WQTRKFVQNVSLIIMDEIHLLASD-RGPILEMIVSRMNYVSSQTKKPIRLLGMSTAVSNA 1304
W+ RK +Q++ L+I D+ H ++ G + E ++SRM ++++Q +K IR + +S ++NA
Sbjct: 1459 WRQRKNIQSLELMIYDDAHEISQGVYGAVYETLISRMIFIATQLEKKIRFVCLSNCLANA 1518
Query: 1305 FDMASWLGVKGNGLYNFPSSVRPVPLKMYIDGFPD----NLNFCPLMKTMNKPAFMAIKQ 1360
D W G+ + +YNF S R PL++ I F D + NF L A A +
Sbjct: 1519 RDFGEWAGMTKSNIYNFSPSERIEPLEINIQSFKDVEHISFNFSMLQMAFEASAAAAGNR 1578
Query: 1361 HSPEKPVLLFVASRRQTRLTALDLIHLCGMEDNPRRFLHIDDEEELQYYISKVSDDTLKL 1420
+S +F+ SR+ A + + L+++ EE++ YI K++D L+
Sbjct: 1579 NSSS----VFLPSRKDCMEVASAFMKFSKAIEWD--MLNVE-EEQIVPYIEKLTDGHLRA 1631
Query: 1421 SLQFGIGLHHAGLIESDRAISHELFLRSKIQILVATSTLAWGVNLPAHLVIIKGTQFFDA 1480
L+ G+G+ + G+ +D I L+ + +L+ + + VII GT +D
Sbjct: 1632 PLKHGVGILYKGMASNDERIVKRLYEYGAVSVLLISKDCS-AFACKTDEVIILGTNLYDG 1690
Query: 1481 KIEGYRDMDLTDILQMMGRAGRPAYDTSGTAIVYTKESKKMFYKHFLNVGFPVESSLHKV 1540
Y + ++L+M+G A +G ++ T + K +YK FL P ES L +
Sbjct: 1691 AEHKYMPYTINELLEMVGLASGND-SMAGKVLILTSHNMKAYYKKFLIEPLPTESYLQYI 1749
Query: 1541 LDDHMGAEIASGTISTKQEALDFLNWTFLFRRAHHNPTYYGINDDTSTSGINKYLSDLVN 1600
+ D + EIA+ I +KQ+ +D+ +++ +RR H NP+YYG+ D TS GI+ +LS+LV
Sbjct: 1750 IHDTLNNEIANSIIQSKQDCVDWFTYSYFYRRIHVNPSYYGVRD-TSPHGISVFLSNLVE 1808
Query: 1601 NTLDNLKESRCVEIY------------GTNXXXXXXXXXXXXXXXXHK-----TIRSLLK 1643
L++L ES +EI G + H TI+S +
Sbjct: 1809 TCLNDLVESSFIEIDDTEAEVTAEVNGGDDEATEIISTLSNGLIASHYGVSFFTIQSFVS 1868
Query: 1644 QINSNASFQDVLKWLSLAVEYNELPVRNGEIIMNVEMSAQSRYSIESTFIDEFELPMWDP 1703
+++ ++ +++L LS AVE+ +P+R G+ + V++S + LP+ P
Sbjct: 1869 SLSNTSTLKNMLYVLSTAVEFESVPLRKGDRALLVKLSKR--------------LPLRFP 1914
Query: 1704 H--------VKAFLLLQAYLSRAELPIVDYHQDTISVLDQSLRILQAYVDVAAELGYFNT 1755
K FLLLQAY SR ELP VD+ D +L++ + ++ VD+ + GY N
Sbjct: 1915 EHTSSGSVSFKVFLLLQAYFSRLELP-VDFQNDLKDILEKVVPLINVVVDILSANGYLNA 1973
Query: 1756 VMTLIKAMQCVKQGYWYEDDPISALP 1781
T + Q + QG W D+P+ +P
Sbjct: 1974 T-TAMDLAQMLIQGVWDVDNPLRQIP 1998
Score = 333 bits (853), Expect = 2e-90
Identities = 218/720 (30%), Positives = 365/720 (50%), Gaps = 34/720 (4%)
Query: 1097 HLIRPHNETLQTRLQKLNPLPT---SALKNPLVESIYPFKYFNPMQTMVFHTLYHSNVST 1153
H+ P + L+++ LP A + S+ NP+Q+ VFH + + +
Sbjct: 464 HIPAPSKPVIDYELKEITSLPDWCQEAFPSSETTSL------NPIQSKVFHAAFEGDSNM 517
Query: 1154 FVGSPTGSGKTVVAELAIWHAFRDY----------PGSKVVYIAPMKALVRERVNDWRKR 1203
+ +PTGSGKT +A L + A + K+VYIAP+KALV+E+V ++++R
Sbjct: 518 LICAPTGSGKTNIALLTVLKALSHHYNPKTKKLNLSAFKIVYIAPLKALVQEQVREFQRR 577
Query: 1204 ITPVTGDRIVELTGDSVPDPQDIKDATIVITTPEKFDGISRNWQTRKFVQNVSLIIMDEI 1263
+ G ++ ELTGDS + I + ++++TPEK+D +RN V+ V L+I+DEI
Sbjct: 578 LA-FLGIKVAELTGDSRLSRKQIDETQVLVSTPEKWDITTRNSNNLAIVELVRLLIIDEI 636
Query: 1264 HLLASDRGPILEMIVSRMNYVSSQTKKPIRLLGMSTAVSNAFDMASWLGVKGNGLYNFPS 1323
HLL DRGP+LE IV+R + S ++ R++G+S + N D+ +L V GL+ F S
Sbjct: 637 HLLHDDRGPVLESIVARTFWASKYGQEYPRIIGLSATLPNYEDVGRFLRVPKEGLFYFDS 696
Query: 1324 SVRPVPLKMYIDGFPDNLNFCPLMKTMNKPAFMAIKQHSPE-KPVLLFVASRRQTRLTAL 1382
S RP PL G + N +K MN + + + E +++FV SR++T TA
Sbjct: 697 SFRPCPLSQQFCGIKER-NSLKKLKAMNDACYEKVLESINEGNQIIVFVHSRKETSRTAT 755
Query: 1383 DLIHLCGMEDNPRRFLHID--DEEELQYYISKVSDDTLKLSLQFGIGLHHAGLIESDRAI 1440
L + E+ + D ++ L+ + V D +L+ ++ GIG HHAGL SDR++
Sbjct: 756 WLKNKFAEENITHKLTKNDAGSKQILKTEAANVLDPSLRKLIESGIGTHHAGLTRSDRSL 815
Query: 1441 SHELFLRSKIQILVATSTLAWGVNLPAHLVIIKGTQFFDAKIEGYRDMDLTDILQMMGRA 1500
S +LF +Q+LV T+TLAWGVNLPAH VIIKGT + + + + D+LQM+GRA
Sbjct: 816 SEDLFADGLLQVLVCTATLAWGVNLPAHTVIIKGTDVYSPEKGSWEQLSPQDVLQMLGRA 875
Query: 1501 GRPAYDTSGTAIVYTKESKKMFYKHFLNVGFPVESSLHKVLDDHMGAEIASGTISTKQEA 1560
GRP YDT G I+ T +S +Y LN P+ES L D++ AE+ +G I + +A
Sbjct: 876 GRPRYDTFGEGIIITDQSNVQYYLSVLNQQLPIESQFVSKLVDNLNAEVVAGNIKCRNDA 935
Query: 1561 LDFLNWTFLFRRAHHNPTYYGINDDTSTSGINKYLSDLVNNTLDNLKESRCVEIYGTN-- 1618
+++L +T+L+ R +P Y + D +S + K+ LV++ L LKE V N
Sbjct: 936 VNWLAYTYLYVRMLASPMLYKVPDISSDGQLKKFRESLVHSALCILKEQELVLYDAENDV 995
Query: 1619 XXXXXXXXXXXXXXXXHKTIRSLLKQINSNASFQDVLKWLSLAVEYNELPVRNGEIIMNV 1678
H ++ ++++ + + D+ + S++ E+ + VR
Sbjct: 996 IEATDLGNIASSFYINHASMDVYNRELDEHTTQIDLFRIFSMSEEFKYVSVR-------Y 1048
Query: 1679 EMSAQSRYSIESTFIDEFELPMWDPHVKAFLLLQAYLSRAELPIVDYHQDTISVLDQSLR 1738
E + + +E I E + DP K +LLQ+Y S+ + + D + + + R
Sbjct: 1049 EEKRELKQLLEKAPIPIRE-DIDDPLAKVNVLLQSYFSQLKFEGFALNSDIVFIHQNAGR 1107
Query: 1739 ILQAYVDVAAELGYFNTVMTLIKAMQCVKQGYWYEDDPISALPGAHLKRDDRIEFGDDGW 1798
+L+A ++ + G+ + L+ + W + P+ ++ R+E W
Sbjct: 1108 LLRAMFEICLKRGWGHPTRMLLNLCKSATTKMWPTNCPLRQFKTCPVEVIKRLEASTVPW 1167
>ECU07g0830 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily
Length = 1058
Score = 404 bits (1037), Expect = e-111
Identities = 258/677 (38%), Positives = 378/677 (55%), Gaps = 72/677 (10%)
Query: 248 EITIPCAVPKRKFDIPLVKVSDLDEYCRKVFEYDYLNKVQSLVYPVAYNTNGNMLICAPT 307
E + P +VP + D + +D ++ F++ N VQS V+ AY ++GNML+CAPT
Sbjct: 72 EYSFPESVPM-EVDASEIVYTDAVGEDKQYFDHGAFNAVQSRVFKPAYRSDGNMLVCAPT 130
Query: 308 GAGKTDIALLTILNTIKQFSVINEEGGFDIEYDDFKIIYVAPLKALAAEITDKFARKLSV 367
G+GKTD+ALL IL +K+ K++YV P++ALA EI K+ +KL
Sbjct: 131 GSGKTDVALLCILRALKKGD---------------KVVYVVPMRALATEIALKYKKKLGG 175
Query: 368 FDVKVRELTGDMQLTKREILETQVIVTTPEKWDVVTRKASGDNDLTSKVKLLILDEVHLL 427
+V E TGD + +++ V+V+TPEK+DV TR+ + ++ L++LDE+H+L
Sbjct: 176 H--RVVEYTGDTEAGAEDVMRCDVVVSTPEKFDVATRRQH--SVFQGRIGLVVLDEIHML 231
Query: 428 HEDRGSVIESLVARTLRQVESSQTMIRILGLSATLPNFVDVADFLGVNRNVGMFYFDQSF 487
+DRG V+E++V R LR VE Q +IRI+GLSATLPN+ DV FL R +F FDQ +
Sbjct: 232 QDDRGPVVETIVCRVLRHVELGQRLIRIVGLSATLPNYEDVGRFL---RAEHVFSFDQGY 288
Query: 488 RPKALEQHLIGCRGKAGSKQCRENTDKVAYEKAVEMMKLGNQVMIFVHSRKDTVKTARTL 547
RP L+ +IG + K SK E D++ EK E + G QV++FVHSR DT++ AR L
Sbjct: 289 RPVPLKMSVIGMKRK--SKPQLE--DELLQEKVREYLSNGKQVLVFVHSRGDTIRIARLL 344
Query: 548 ISMA-RDNYEMDLFTSNDASVTIFQKELSKHKDKDLKELFQSGFGVHHAGMSRSDRNITE 606
R N + T L EL + G GVHHAG+ R R E
Sbjct: 345 GDEGERRNVKAGTVTGA------------------LLELVRRGVGVHHAGLPRRIRLYME 386
Query: 607 KMFKSGAVNVLVCTATLAWGVNLPADCVIIKGTQVYDSKKGGYTDLGISDVIQIFGRAGR 666
FK V VLV T+TLAWGVNLPA VIIKGT+ YDS KGG+ D+GI DV+QIFGRAGR
Sbjct: 387 DEFKRRGVRVLVTTSTLAWGVNLPAYAVIIKGTRFYDSSKGGFADVGILDVLQIFGRAGR 446
Query: 667 PGFGSDYGTAYLCTSNDRLDHYVDLITQQHPIESRLGAKVVDNLNAEISLGTVTNVEEGV 726
P F S G L T+ D++D+YV L+ +ESRL V D +NAEI LGT+ +V V
Sbjct: 447 PQFDS-RGEGCLITTGDKMDYYVSLLKNSRDVESRLLQHVADVMNAEIYLGTIEDVSTAV 505
Query: 727 KWLGYTYMFVRMKQNPFTYGIDWEEIRNDPQLYEKRRQII---ITAARRLHSLQM----- 778
+WL T+M+VRM +NP YG+ E+ LY++ R + I RRL M
Sbjct: 506 EWLKSTFMYVRMSKNPMYYGLSRED------LYDEERALSDYGILTCRRLEECGMVRIYR 559
Query: 779 -IVFDEVSMHFIPKDLGRIASEFYLLNESVEIFNQVANPRATEADVLAMISMSSEFDSIK 837
+ D + F + GR+AS +YL +E++E + + E +L + + E +++
Sbjct: 560 QVAGDSRTWRFCSTEYGRVASMYYLSHETMEKWLEDIGNVYDEDSILRLCFEARELSALR 619
Query: 838 FREEESNELNKLL-DCAVECQISGDVDSSPGKTNILLQAYVSQSRINDSALNSDANYIAQ 896
R+E+ + +L D ++ ++S + K L++A++ + + +L D Y+ +
Sbjct: 620 CRDEDEESIKELCEDLGIKYEVSVEC-----KLMALVKAHIKRHPVTRFSLMCDGEYVIK 674
Query: 897 NSARI----CRALLLIG 909
N RI C+ L+ G
Sbjct: 675 NLRRILMGLCQVLMFQG 691
Score = 267 bits (683), Expect = 1e-70
Identities = 179/488 (36%), Positives = 264/488 (53%), Gaps = 42/488 (8%)
Query: 1135 FNPMQTMVFHTLYHSNVSTFVGSPTGSGKTVVAELAIWHAFRDYPGSKVVYIAPMKALVR 1194
FN +Q+ VF Y S+ + V +PTGSGKT VA L I A + G KVVY+ PM+AL
Sbjct: 106 FNAVQSRVFKPAYRSDGNMLVCAPTGSGKTDVALLCILRALKK--GDKVVYVVPMRALAT 163
Query: 1195 ERVNDWRKRITPVTGDRIVELTGDSVPDPQDIKDATIVITTPEKFDGISRNWQTRKFVQN 1254
E ++K++ G R+VE TGD+ +D+ +V++TPEKFD +R Q F
Sbjct: 164 EIALKYKKKLG---GHRVVEYTGDTEAGAEDVMRCDVVVSTPEKFDVATRR-QHSVFQGR 219
Query: 1255 VSLIIMDEIHLLASDRGPILEMIVSRMNYVSSQTKKPIRLLGMSTAVSNAFDMASWLGVK 1314
+ L+++DEIH+L DRGP++E IV R+ ++ IR++G+S + N D+ +L +
Sbjct: 220 IGLVVLDEIHMLQDDRGPVVETIVCRVLRHVELGQRLIRIVGLSATLPNYEDVGRFL--R 277
Query: 1315 GNGLYNFPSSVRPVPLKMYIDGFPDNLNFCPLMKTMNKPAFM------AIKQH-SPEKPV 1367
+++F RPVPLKM + G MK +KP ++++ S K V
Sbjct: 278 AEHVFSFDQGYRPVPLKMSVIG----------MKRKSKPQLEDELLQEKVREYLSNGKQV 327
Query: 1368 LLFVASRRQTRLTALDLIHLCGMEDNPRRFLHIDDEEELQYYISKVSDDTLKLSLQFGIG 1427
L+FV SR T + + L G D+ E V+ L+L ++ G+G
Sbjct: 328 LVFVHSRGDT----IRIARLLG-----------DEGERRNVKAGTVTGALLEL-VRRGVG 371
Query: 1428 LHHAGLIESDRAISHELFLRSKIQILVATSTLAWGVNLPAHLVIIKGTQFFDAKIEGYRD 1487
+HHAGL R + F R +++LV TSTLAWGVNLPA+ VIIKGT+F+D+ G+ D
Sbjct: 372 VHHAGLPRRIRLYMEDEFKRRGVRVLVTTSTLAWGVNLPAYAVIIKGTRFYDSSKGGFAD 431
Query: 1488 MDLTDILQMMGRAGRPAYDTSGTAIVYTKESKKMFYKHFLNVGFPVESSLHKVLDDHMGA 1547
+ + D+LQ+ GRAGRP +D+ G + T K +Y L VES L + + D M A
Sbjct: 432 VGILDVLQIFGRAGRPQFDSRGEGCLITTGDKMDYYVSLLKNSRDVESRLLQHVADVMNA 491
Query: 1548 EIASGTISTKQEALDFLNWTFLFRRAHHNPTYYGINDDTSTSGINKYLSDLVNNTLDNLK 1607
EI GTI A+++L TF++ R NP YYG++ + + LSD T L+
Sbjct: 492 EIYLGTIEDVSTAVEWLKSTFMYVRMSKNPMYYGLSRE-DLYDEERALSDYGILTCRRLE 550
Query: 1608 ESRCVEIY 1615
E V IY
Sbjct: 551 ECGMVRIY 558
>ECU06g0920 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily
Length = 1481
Score = 285 bits (728), Expect = 7e-76
Identities = 209/683 (30%), Positives = 353/683 (51%), Gaps = 97/683 (14%)
Query: 275 RKVFEYDYL-NKVQSLVYPVAYNTNGNMLICAPTGAGKTDIALLTILNTIKQFSVINEEG 333
+++F D++ N +QS+V +GN+L+CAPTG+GKT I +++IL ++ +
Sbjct: 238 KRLFGEDFMFNYIQSMVQDSVLKGDGNVLVCAPTGSGKTVIGMMSILREAERRKKM---- 293
Query: 334 GFDIEYDDFKIIYVAPLKALAAEITDKFARKLSVFDVKVRELTGDMQLTKREILETQVIV 393
++ Y+ P+KALA EI +R S + + V E T D+ + T VIV
Sbjct: 294 ---------RVGYIVPMKALAREICRTISRWFSGYGISVVEHTSDVYSGYAHLERTGVIV 344
Query: 394 TTPEKWDVVTRKASGDNDLTSKVKLLILDEVHLLHEDRGSVIESLVARTLRQVESSQTMI 453
+TPEK+DV+TR + DL L+++DE+H++ + RG+ +E++VAR + +
Sbjct: 345 STPEKFDVLTR----NTDLW--FDLVVIDEIHMVGDSRGAAVEAVVARM-----AVRGGC 393
Query: 454 RILGLSATLPNFVDVADFLGVNRNVGMFYFDQSFRPKALEQHLIGCRGKAGSKQCRENTD 513
RI+GLSATLPN++DV F+G N + +FYF FR ++ +I RE
Sbjct: 394 RIVGLSATLPNYMDVGAFIGCN-DPDIFYFGPEFRKSPIDYEVINVGA-------REREM 445
Query: 514 KVAYEKAVEMMKLGNQVMIFVHSRKDTVKTARTLISMARDNYEMDLFTSNDASVTIFQKE 573
+ EK +E + V++FVHSR + ++ A + M+ + + A V+ +E
Sbjct: 446 DMTIEKVLENLDSNGPVLVFVHSRNEALEVANEI------RRYMEKASDDGADVSPEVRE 499
Query: 574 LSKHKDKDLKELFQSGFGVHHAGMSRSDRNITEKMFKSGAVNVLVCTATLAWGVNLPADC 633
L KH+ G+HHAG+ R R E ++++G ++V+V TATLAWGVNLP
Sbjct: 500 LLKHR-----------VGIHHAGLDRKTRVAVEDLYRNGKIDVMVSTATLAWGVNLPGKT 548
Query: 634 VIIKGTQVYDSKKGGYTDLGISDVIQIFGRAGRPGFGSDYGTAYLCTSNDRLDHYVDLIT 693
VIIKGT+VYD+ + + ++IQ+FGRAGR G D G + S+ + V
Sbjct: 549 VIIKGTEVYDASTSRWRPIKQIEMIQMFGRAGRSG---DDGCKGILISSKENEFLV---- 601
Query: 694 QQHPIESRLGAKVVDNLNAEISLGTVTNVEEGVKWLGYTYMFVRMKQNPFTYGIDWEEIR 753
Q I+SRL + D LNAEI G + E+ + W +T+ + R+ ++
Sbjct: 602 -QRSIDSRLLPSLCDCLNAEIVKG-MRRFEDMIDWFKHTFYYTRL-----------VKVS 648
Query: 754 NDPQLYEKRRQIIITAARRLHSLQMIVFDEVSMHFIPKDLGRIASEFYL-LNESVEIFNQ 812
+P K +++ +A + L +I E ++H P ++G ++S +Y+ ++ +F+
Sbjct: 649 REPARMVK--ELVYSALKLLEDAGLIAL-EPAIH--PTEVGEVSSRYYVHYRDARRLFDG 703
Query: 813 VANPRATEADVLAMISMSSEFDSIKFREEESNELNKLLDCAVECQISGDVDSSPGKTNIL 872
+++ E + ++ + EF + E+ L L+ E +L
Sbjct: 704 LSHV-MLEPSIFQILEKAREFSDLSIDEKAMESLRGLVPIPTESSF-----------GVL 751
Query: 873 LQAYVSQSRINDSALNSDANYIAQNSARICRALLLIGINRRWGTFSKVMLDICKSIEKRM 932
LQ YV+ +RI ++L +QN R+ RAL IG+ +R G SK++L CK+ E R+
Sbjct: 752 LQCYVA-NRIESTSL-------SQNLCRMFRALFEIGVRKRLG-ISKMILGWCKAAEHRI 802
Query: 933 WAFDHPLCQFDLPDTILRNIKAK 955
+ + PL QF LR+++ K
Sbjct: 803 FPYQTPLRQFADDKNALRDLEMK 825
Score = 183 bits (465), Expect = 2e-45
Identities = 128/447 (28%), Positives = 216/447 (47%), Gaps = 59/447 (13%)
Query: 1135 FNPMQTMVFHTLYHSNVSTFVGSPTGSGKTVVAELAIWHAFRDYPGSKVVYIAPMKALVR 1194
FN +Q+MV ++ + + V +PTGSGKTV+ ++I +V YI PMKAL R
Sbjct: 247 FNYIQSMVQDSVLKGDGNVLVCAPTGSGKTVIGMMSILREAERRKKMRVGYIVPMKALAR 306
Query: 1195 E---RVNDWRKRITPVTGDRIVELTGDSVPDPQDIKDATIVITTPEKFDGISRNWQTRKF 1251
E ++ W G +VE T D ++ ++++TPEKFD ++RN
Sbjct: 307 EICRTISRWFSGY----GISVVEHTSDVYSGYAHLERTGVIVSTPEKFDVLTRNTDLW-- 360
Query: 1252 VQNVSLIIMDEIHLLASDRGPILEMIVSRMNYVSSQTKKPIRLLGMSTAVSNAFDMASWL 1311
L+++DEIH++ RG +E +V+RM + R++G+S + N D+ +++
Sbjct: 361 ---FDLVVIDEIHMVGDSRGAAVEAVVARM-----AVRGGCRIVGLSATLPNYMDVGAFI 412
Query: 1312 GVKGNGLYNFPSSVRPVPLKMYIDGFPDNLNFCPLMKTMNKPAFMAIKQHSPEKPVLLFV 1371
G ++ F R P+ + +N + M+ ++ PVL+FV
Sbjct: 413 GCNDPDIFYFGPEFRKSPIDYEV------INVGAREREMDMTIEKVLENLDSNGPVLVFV 466
Query: 1372 ASRRQTRLTALDLIHLCGMEDNPRRFLHIDDEEELQYYISKVSDDTLKLS------LQFG 1425
SR + ++ E++ Y+ K SDD +S L+
Sbjct: 467 HSRNEA----------------------LEVANEIRRYMEKASDDGADVSPEVRELLKHR 504
Query: 1426 IGLHHAGLIESDRAISHELFLRSKIQILVATSTLAWGVNLPAHLVIIKGTQFFDAKIEGY 1485
+G+HHAGL R +L+ KI ++V+T+TLAWGVNLP VIIKGT+ +DA +
Sbjct: 505 VGIHHAGLDRKTRVAVEDLYRNGKIDVMVSTATLAWGVNLPGKTVIIKGTEVYDASTSRW 564
Query: 1486 RDMDLTDILQMMGRAGRPAYDTSGTAIVYTKESKKMFYKHFLNVGFPVESSLHKVLDDHM 1545
R + +++QM GRAGR D ++ +KE++ + + ++S L L D +
Sbjct: 565 RPIKQIEMIQMFGRAGRSGDDGCKGILISSKENEFLVQR-------SIDSRLLPSLCDCL 617
Query: 1546 GAEIASGTISTKQEALDFLNWTFLFRR 1572
AEI G + ++ +D+ TF + R
Sbjct: 618 NAEIVKG-MRRFEDMIDWFKHTFYYTR 643
>YGL251c [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily
Length = 1187
Score = 262 bits (669), Expect = 5e-69
Identities = 207/706 (29%), Positives = 337/706 (47%), Gaps = 62/706 (8%)
Query: 1100 RPHNETLQTRLQKLNPLPTSALKNPLVESIYPFKYFNPMQTMVFHTLYHSNVSTFVGSPT 1159
+P T++ +K L T+ L + ++ F FN MQ+ F ++Y SN + + SPT
Sbjct: 107 KPKKVTIRKSAKKC--LSTTILPDSF-RGVFKFTEFNKMQSEAFPSIYESNENCIISSPT 163
Query: 1160 GSGKTVVAELAIWHAFR----DYPGSKVVYIAPMKALVRERVNDWRKRITPVTGDRIVEL 1215
GSGKTV+ ELAI + D +K++YIAP K+L E +W ++ + L
Sbjct: 164 GSGKTVLFELAILRLIKETNSDTNNTKIIYIAPTKSLCYEMYKNWFPSFVNLS---VGML 220
Query: 1216 TGD-SVPDPQDIKDATIVITTPEKFDGISRNWQT-RKFVQNVSLIIMDEIHLLASDRGPI 1273
T D S + + K I+ITTPEK+D ++R W + + V L+++DEIH + RG
Sbjct: 221 TSDTSFLETEKAKKCNIIITTPEKWDLLTRRWSDYSRLFELVKLVLVDEIHTIKEKRGAS 280
Query: 1274 LEMIVSRMNYVSSQTKKPIRLLGMSTAVSNAFDMASWLGVKGN---GLYNFPSSVRPVPL 1330
LE+I++RMN + IR + +S V N D+A WL + +F S R V L
Sbjct: 281 LEVILTRMNTMCQN----IRFVALSATVPNIEDLALWLKTNNELPANILSFDESYRQVQL 336
Query: 1331 KMYIDGFPDNL-NFCPLMKTMNKPAFMAIKQHSPEKPVLLFVASRRQTRLTALDLIHLCG 1389
++ G+ N N N I++H+ +PVL+F +R T TA L++
Sbjct: 337 TKFVYGYSFNCKNDFQKDAIYNSKLIEIIEKHADNRPVLIFCPTRASTISTAKFLLNNHI 396
Query: 1390 MEDNPRRFLHIDDEEELQYYISKVSDDTLKLSLQFGIGLHHAGLIESDRAISHELFLRSK 1449
+ +R H SD L +Q GI HHAG+ DR + FL
Sbjct: 397 FSKSKKRCNH------------NPSDKILNECMQQGIAFHHAGISLEDRTAVEKEFLAGS 444
Query: 1450 IQILVATSTLAWGVNLPAHLVIIKGTQFFDA-KIEGYRDMDLTDILQMMGRAGRPAYDTS 1508
I IL +TSTLA GVNLPA+LVIIKGT+ +++ +I+ Y D+D +LQM+GRAGRP ++T
Sbjct: 445 INILCSTSTLAVGVNLPAYLVIIKGTKSWNSSEIQEYSDLD---VLQMIGRAGRPQFETH 501
Query: 1509 GTAIVYTKESKKMFYKHFLNVGFPVESSLHKVLDDHMGAEIASGTISTKQEALDFLNWTF 1568
G A++ T K Y++ ++ +ESSLH L +H+ AE + T+ + + A+++L TF
Sbjct: 502 GCAVIMTDSKMKQTYENLIHGTDVLESSLHLNLIEHLAAETSLETVYSIETAVNWLRNTF 561
Query: 1569 LFRRAHHNP-TYYGINDDTSTSGI-NKYLSDLVNNTLDNLKESRCVEIYGTNXXXXXXXX 1626
+ R NP Y +N S + + ++ LD L + + ++I
Sbjct: 562 FYVRFGKNPAAYQEVNRYVSFHSVEDSQINQFCQYLLDTLVKVKIIDISNGEYKSTAYGN 621
Query: 1627 XXXXXXXXHKTIRSLLKQINSNASFQDVLKWLSLAVEYNELPVRNGE--IIMNVEMSAQS 1684
++++ + S Q +L L+ + E++ + VR+ E + + +S
Sbjct: 622 AMTRHYISFESMKQFI-NAKKFLSLQGILNLLATSEEFSVMRVRHNEKKLFKEINLSPLL 680
Query: 1685 RYSI-----ESTFIDEFELPMWDPHVKAFLLLQAYLSRAELPIVD--------YHQDTIS 1731
+Y +S ID K LL+Q L E P + QD
Sbjct: 681 KYPFLTEKKQSQIIDRVS-------QKVSLLIQYELGGLEFPSYEGASKLHQTLVQDKFL 733
Query: 1732 VLDQSLRILQAYVDVAAELGYFNTVMTLIKAMQCVKQGYWYEDDPI 1777
V R+L+ VD E ++ + ++ + G+ +E+ P+
Sbjct: 734 VFRHCFRLLKCMVDTFIEKSDGTSLKNTLFLLRSL-NGHCWENTPM 778
Score = 257 bits (656), Expect = 1e-67
Identities = 215/719 (29%), Positives = 357/719 (48%), Gaps = 80/719 (11%)
Query: 247 EEITIPCAVPKRKFDIPLVKVSDLDEYCRKVFEYDYLNKVQSLVYPVAYNTNGNMLICAP 306
EE P V RK + + L + R VF++ NK+QS +P Y +N N +I +P
Sbjct: 103 EEAKKPKKVTIRKSAKKCLSTTILPDSFRGVFKFTEFNKMQSEAFPSIYESNENCIISSP 162
Query: 307 TGAGKTDIALLTILNTIKQFSVINEEGGFDIEYDDFKIIYVAPLKALAAEITDKFARKLS 366
TG+GKT + L IL IK+ + + ++ KIIY+AP K+L E+ + S
Sbjct: 163 TGSGKTVLFELAILRLIKETNS---------DTNNTKIIYIAPTKSLCYEMYKNWFP--S 211
Query: 367 VFDVKVRELTGDMQLTKRE-ILETQVIVTTPEKWDVVTRKASGDNDLTSKVKLLILDEVH 425
++ V LT D + E + +I+TTPEKWD++TR+ S + L VKL+++DE+H
Sbjct: 212 FVNLSVGMLTSDTSFLETEKAKKCNIIITTPEKWDLLTRRWSDYSRLFELVKLVLVDEIH 271
Query: 426 LLHEDRGSVIESLVARTLRQVESSQTMIRILGLSATLPNFVDVADFLGVNRNV--GMFYF 483
+ E RG+ +E ++ R ++ IR + LSAT+PN D+A +L N + + F
Sbjct: 272 TIKEKRGASLEVILTRMNTMCQN----IRFVALSATVPNIEDLALWLKTNNELPANILSF 327
Query: 484 DQSFRPKALEQHLIGCRGKAGSKQCRENTDKVAY--EKAVEMMKL---GNQVMIFVHSRK 538
D+S+R L + + G S C+ + K A K +E+++ V+IF +R
Sbjct: 328 DESYRQVQLTKFVYGY-----SFNCKNDFQKDAIYNSKLIEIIEKHADNRPVLIFCPTRA 382
Query: 539 DTVKTARTLISMARDNYEMDLFTSNDASVTIFQKELSKHK--DKDLKELFQSGFGVHHAG 596
T+ TA+ L++ +F+ + K+ H DK L E Q G HHAG
Sbjct: 383 STISTAKFLLNN-------HIFSKS--------KKRCNHNPSDKILNECMQQGIAFHHAG 427
Query: 597 MSRSDRNITEKMFKSGAVNVLVCTATLAWGVNLPADCVIIKGTQVYDSKK-GGYTDLGIS 655
+S DR EK F +G++N+L T+TLA GVNLPA VIIKGT+ ++S + Y+DL
Sbjct: 428 ISLEDRTAVEKEFLAGSINILCSTSTLAVGVNLPAYLVIIKGTKSWNSSEIQEYSDL--- 484
Query: 656 DVIQIFGRAGRPGFGSDYGTAYLCTSNDRLDHYVDLITQQHPIESRLGAKVVDNLNAEIS 715
DV+Q+ GRAGRP F +G A + T + Y +LI +ES L ++++L AE S
Sbjct: 485 DVLQMIGRAGRPQF-ETHGCAVIMTDSKMKQTYENLIHGTDVLESSLHLNLIEHLAAETS 543
Query: 716 LGTVTNVEEGVKWLGYTYMFVRMKQNPFTYG-----IDWEEIRNDPQLYEKRRQIIITAA 770
L TV ++E V WL T+ +VR +NP Y + + + D Q+ + + ++ T
Sbjct: 544 LETVYSIETAVNWLRNTFFYVRFGKNPAAYQEVNRYVSFHSV-EDSQINQFCQYLLDTL- 601
Query: 771 RRLHSLQMIVFDEVSMHFIPKDLGRIASEFYLLNESVEIFNQVANPRATEADVLAMISMS 830
+++ + D + + G + Y+ ES++ F A + +L +++ S
Sbjct: 602 -----VKVKIIDISNGEYKSTAYGNAMTRHYISFESMKQFIN-AKKFLSLQGILNLLATS 655
Query: 831 SEFDSIKFREEESN-----ELNKLL--DCAVECQISGDVDSSPGKTNILLQ--------- 874
EF ++ R E L+ LL E + S +D K ++L+Q
Sbjct: 656 EEFSVMRVRHNEKKLFKEINLSPLLKYPFLTEKKQSQIIDRVSQKVSLLIQYELGGLEFP 715
Query: 875 AYVSQSRINDSALNSDANYIAQNSARICRALLLIGINRRWGTFSKVMLDICKSIEKRMW 933
+Y S+++ + L D + ++ R+ + ++ I + GT K L + +S+ W
Sbjct: 716 SYEGASKLHQT-LVQDKFLVFRHCFRLLKCMVDTFIEKSDGTSLKNTLFLLRSLNGHCW 773
>Hs18548973 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily
Length = 731
Score = 244 bits (623), Expect = 1e-63
Identities = 155/401 (38%), Positives = 228/401 (56%), Gaps = 27/401 (6%)
Query: 1157 SPTGSGKTVVAELAIWHAFRDYP----GSKVVYIAPMKALVRERVNDWRKRITPVTGDRI 1212
+PTGSGKTVV ELAI + P K+VY+AP+KAL +R +DW+++ P+ G
Sbjct: 320 APTGSGKTVVFELAITRLLMEVPLPWLNIKIVYMAPIKALCSQRFDDWKEKFGPI-GLNC 378
Query: 1213 VELTGDSVPDPQ-DIKDATIVITTPEKFDGISRNWQTRKFVQNVSLIIMDEIHLLASD-R 1270
ELTGD+V D +I+ A I++TTPEK+D ++R W+ VQ V L ++DE+H++ + R
Sbjct: 379 KELTGDTVMDDLFEIQHAHIIMTTPEKWDSMTRKWRDNSLVQLVRLFLIDEVHIVKDENR 438
Query: 1271 GPILEMIVSRMNYVSS--QTKK------PIRLLGMSTAVSNAFDMASWL--GVKGNGLYN 1320
GP LE++VSRM V S QT K P+R + +S + NA D+A WL G +
Sbjct: 439 GPTLEVVVSRMKTVQSVSQTLKNTSTAIPMRFVAVSATIPNAEDIAEWLSDGERPAVCLK 498
Query: 1321 FPSSVRPVPLKMYIDGFPDNLNFCPLM--KTMNKPAFMAIKQHSPEKPVLLFVASRRQTR 1378
S RPV L+ + GFP + N T+N I+ +S +KP L+F A+R+ +
Sbjct: 499 MDESHRPVKLQKVVLGFPCSSNQTEFKFDLTLNYKIASVIQMYSDQKPTLVFCATRKGVQ 558
Query: 1379 LTALDLIHLCGMEDNPRRFLHIDDEEELQYYISKVSDDTLKLSLQFGIGLHHAGLIESDR 1438
A L+ + + + ++ ++ LQ Y V D L+ L+ G HHAG+ SDR
Sbjct: 559 QAASVLVK------DAKFIMTVEQKQRLQKYAYSVRDSKLRDILKDGAAYHHAGMELSDR 612
Query: 1439 AISHELFLRSKIQILVATSTLAWGVNLPAHLVIIKGTQFFDAKIEGYRDMDLTDILQMMG 1498
+ F + +L TSTLA GVNLPAHLV+IK T + + + + TDILQM+G
Sbjct: 613 KVVEGAFTVGDLPVLFTTSTLAMGVNLPAHLVVIKSTMHYAGGL--FEEYSETDILQMIG 670
Query: 1499 RAGRPAYDTSGTAIVYTKESKKMFYKHFLNVGFPVESSLHK 1539
RAGRP +DT+ TA++ T+ S + Y L VESS+ +
Sbjct: 671 RAGRPQFDTTATAVIMTRLSTRDKYIQMLACRDTVESSMRQ 711
Score = 194 bits (494), Expect = 9e-49
Identities = 132/415 (31%), Positives = 210/415 (49%), Gaps = 32/415 (7%)
Query: 300 NMLICAPTGAGKTDIALLTILNTIKQFSVINEEGGFDIEYDDFKIIYVAPLKALAAEITD 359
N +ICAPTG+GKT + L I + + + + + KI+Y+AP+KAL ++ D
Sbjct: 315 NFVICAPTGSGKTVVFELAITRLLMEVP---------LPWLNIKIVYMAPIKALCSQRFD 365
Query: 360 KFARKLSVFDVKVRELTGDMQLTKR-EILETQVIVTTPEKWDVVTRKASGDNDLTSKVKL 418
+ K + +ELTGD + EI +I+TTPEKWD +TRK DN L V+L
Sbjct: 366 DWKEKFGPIGLNCKELTGDTVMDDLFEIQHAHIIMTTPEKWDSMTRKWR-DNSLVQLVRL 424
Query: 419 LILDEVHLLH-EDRGSVIESLVARTLRQVESSQTM--------IRILGLSATLPNFVDVA 469
++DEVH++ E+RG +E +V+R SQT+ +R + +SAT+PN D+A
Sbjct: 425 FLIDEVHIVKDENRGPTLEVVVSRMKTVQSVSQTLKNTSTAIPMRFVAVSATIPNAEDIA 484
Query: 470 DFLGVNRNVGM-FYFDQSFRPKALEQHLIGCRGKAGSKQCR-ENTDKVAYEKAVEMMKLG 527
++L + D+S RP L++ ++G + + + + T ++M
Sbjct: 485 EWLSDGERPAVCLKMDESHRPVKLQKVVLGFPCSSNQTEFKFDLTLNYKIASVIQMYSDQ 544
Query: 528 NQVMIFVHSRKDTVKTARTLISMARDNYEMDLFTSNDASVTIFQKELSKHKDKDLKELFQ 587
++F +RK + A L+ A+ F QK +D L+++ +
Sbjct: 545 KPTLVFCATRKGVQQAASVLVKDAK-------FIMTVEQKQRLQKYAYSVRDSKLRDILK 597
Query: 588 SGFGVHHAGMSRSDRNITEKMFKSGAVNVLVCTATLAWGVNLPADCVIIKGTQVYDSKKG 647
G HHAGM SDR + E F G + VL T+TLA GVNLPA V+IK T Y G
Sbjct: 598 DGAAYHHAGMELSDRKVVEGAFTVGDLPVLFTTSTLAMGVNLPAHLVVIKSTMHYAG--G 655
Query: 648 GYTDLGISDVIQIFGRAGRPGFGSDYGTAYLCTSNDRLDHYVDLITQQHPIESRL 702
+ + +D++Q+ GRAGRP F + TA + T D Y+ ++ + +ES +
Sbjct: 656 LFEEYSETDILQMIGRAGRPQFDTT-ATAVIMTRLSTRDKYIQMLACRDTVESSM 709
>CE24303 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily
Length = 1002
Score = 219 bits (558), Expect = 3e-56
Identities = 185/627 (29%), Positives = 302/627 (47%), Gaps = 87/627 (13%)
Query: 4 TYSVHSVGSYMKAMEVMVSAAQAFPHLDTSTIPKVDEELKKGTKRSDNRNKLLVTSQDRN 63
T + V ++K ++ + +A A T I K E K K D R L + +N
Sbjct: 16 TVVLSDVLDHLKTYDICILSATA---RKTKCIVKQSIERAKKRKSEDQRWLSLSIATRQN 72
Query: 64 EWDDIFEEFANLSSDNLQSLITSNHSASNAQAQVYKELFRLLDNVDSDFPRDQLL----Q 119
++ +E + A+ Y++L V RD++L +
Sbjct: 73 YFEIKYELYV---------------FPEKAERVSYRQLKGASPLVFDGSRRDEILPWPQR 117
Query: 120 QLIELLRNNENTGTADQDLFDYLGAENIE--------LISFLIENQEILKHTPIEHMSNS 171
+ + +LR G +D D L N+E + L + Q I++ T H S
Sbjct: 118 RFVTILRVGNEKG---RDFIDLLTDCNVERELKSIEECMKSLPDVQRIVEITEEPHESPP 174
Query: 172 DTYEGNRFMTEEDMRRQVLKNREKGK---NAKLATAQRKVKYPHVFRQSEDAGSSMLSFA 228
T + + R+ K EK K N L +RK+K +SE G
Sbjct: 175 KT----KITRLPSVLREAEKAIEKQKTLNNLDLNFGERKMKK----EESEQRGFF----- 221
Query: 229 GQKFALPAGSMRYTFQTHEEITIPCAVPKRKF--DIPLVKVSDLDEYCRKVFE-YDYLNK 285
Q LP GS R +++EE +P P R F + VS+L ++ + F+ Y LN+
Sbjct: 222 -QSCKLPVGSYRLQKKSYEEFHVPALQP-RPFAGGEKITSVSELPKWAKPAFDGYKSLNR 279
Query: 286 VQSLVYPVAYNTNGNMLICAPTGAGKTDIALLTILNTIKQFSVINEEGGFDIEYDDFKII 345
+QS + A + ++L+CAPTGAGKT++ LLT+L I + E+G ++ ++FKI+
Sbjct: 280 IQSRLCDSALRSKEHLLLCAPTGAGKTNVGLLTMLQEIGNH--LAEDG--SVKLEEFKIV 335
Query: 346 YVAPLKALAAEITDKFARKLSVFDVKVRELTGDMQLTKREILETQVIVTTPEKWDVVTRK 405
Y+AP K+L E+ F+++L+ F + V E+TG Q+ K + + TQVIV TPEK+DVVTRK
Sbjct: 336 YIAPTKSLVQEMVGSFSKRLAPFGITVGEMTG--QMNKEQFMATQVIVCTPEKYDVVTRK 393
Query: 406 ASGDNDLTSKVKLLILDEVHLLHEDRGSVIESLVARTLRQVESSQTMIRILGLSATLPNF 465
G+ V+LLI+DE+HLLH+DRG V+ES+V Q+ + M R +
Sbjct: 394 -GGERAYNQMVRLLIIDEIHLLHDDRGPVLESIV-----QLFRIRKMWRHV--------- 438
Query: 466 VDVADFLGVNRNVGMFYFDQSFRPKALEQHLIGCRGKAGSKQCRENTDKVAYEKAVEMMK 525
+ + +FD S+RP L+Q +IG K + ++ Y+K ++
Sbjct: 439 ----------KTEHLHFFDNSYRPVPLKQQIIGVTEKNDDSATSQAMNEAVYDKIMKHAG 488
Query: 526 LGNQVMIFVHSRKDTVKTARTLISMARDNYEMDLF-TSNDASVTIFQKELSKHKDKDLKE 584
+QV++FVH RK+T +TA+ + + + F AS I + E + K+ DLK+
Sbjct: 489 -KSQVLVFVHYRKETTETAKAIRDACLEKDTLSAFMREGSASTEILRTEAEQAKNLDLKD 547
Query: 585 LFQSGFGVHHAGMSRSDRNITEKMFKS 611
L GF +H+AGM+R ++ EK+ ++
Sbjct: 548 LLPYGFAIHNAGMNRPQKDDKEKLLET 574
Score = 128 bits (321), Expect = 1e-28
Identities = 97/313 (30%), Positives = 151/313 (47%), Gaps = 37/313 (11%)
Query: 1132 FKYFNPMQTMVFHTLYHSNVSTFVGSPTGSGKTVVAELAIWHAFRDY---PGS------K 1182
+K N +Q+ + + S + +PTG+GKT V L + ++ GS K
Sbjct: 274 YKSLNRIQSRLCDSALRSKEHLLLCAPTGAGKTNVGLLTMLQEIGNHLAEDGSVKLEEFK 333
Query: 1183 VVYIAPMKALVRERVNDWRKRITPVTGDRIVELTGDSVPDPQDIKDATIVITTPEKFDGI 1242
+VYIAP K+LV+E V + KR+ P G + E+TG + + +++ TPEK+D +
Sbjct: 334 IVYIAPTKSLVQEMVGSFSKRLAPF-GITVGEMTGQM--NKEQFMATQVIVCTPEKYDVV 390
Query: 1243 SRNWQTRKFVQNVSLIIMDEIHLLASDRGPILEMIVSRMNYVSSQTKKPIRLLGMSTAVS 1302
+R R + Q V L+I+DEIHLL DRGP+LE IV IR +
Sbjct: 391 TRKGGERAYNQMVRLLIIDEIHLLHDDRGPVLESIVQLFR---------IRKM------- 434
Query: 1303 NAFDMASWLGVKGNGLYNFPSSVRPVPLKMYIDGFPDNLNFCPLMKTMNKPAFMAIKQHS 1362
W VK L+ F +S RPVPLK I G + + + MN+ + I +H+
Sbjct: 435 -------WRHVKTEHLHFFDNSYRPVPLKQQIIGVTEKNDDSATSQAMNEAVYDKIMKHA 487
Query: 1363 PEKPVLLFVASRRQTRLTALDLIHLCGMEDNPRRFLH--IDDEEELQYYISKVSDDTLKL 1420
+ VL+FV R++T TA + C +D F+ E L+ + + LK
Sbjct: 488 GKSQVLVFVHYRKETTETAKAIRDACLEKDTLSAFMREGSASTEILRTEAEQAKNLDLKD 547
Query: 1421 SLQFGIGLHHAGL 1433
L +G +H+AG+
Sbjct: 548 LLPYGFAIHNAGM 560
>7294212 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily
Length = 678
Score = 203 bits (517), Expect = 2e-51
Identities = 114/239 (47%), Positives = 164/239 (67%), Gaps = 11/239 (4%)
Query: 228 AGQKFALPAGSMRYTFQTHEEITIPCAVPKRKFDI--PLVKVSDLDEYCRKVFE-YDYLN 284
A ++ LP GS R + +EE+ +P P FD L V L +Y + VFE + LN
Sbjct: 424 ANKRCQLPDGSYRKQRKGYEEVHVPALKPV-PFDANEELQPVDKLPKYVQPVFEGFKTLN 482
Query: 285 KVQSLVYPVAYNTNGNMLICAPTGAGKTDIALLTILNTIKQFSVINEEGGFDIEYDDFKI 344
++QS +Y A +++ NML+CAPTGAGKT++ALLT++ I + INE+G I DFKI
Sbjct: 483 RIQSRLYKAALDSDENMLLCAPTGAGKTNVALLTMMREIGKH--INEDG--TINAQDFKI 538
Query: 345 IYVAPLKALAAEITDKFARKLSVFDVKVRELTGDMQLTKREILETQVIVTTPEKWDVVTR 404
IYVAP+K+L E+ F R+L+ +++ V ELTGD QLT+ +I TQVIV TPEKWD++TR
Sbjct: 539 IYVAPMKSLVQEMVGNFGRRLACYNLTVSELTGDHQLTREQIAATQVIVCTPEKWDIITR 598
Query: 405 KASGDNDLTSKVKLLILDEVHLLHEDRGSVIESLVARTLRQVESSQTMIRILGLSATLP 463
K G+ S V+L+I+DE+HLLH++RG V+E+LVART+R +E++Q +R+ LSA +P
Sbjct: 599 K-GGERTFVSLVRLVIIDEIHLLHDERGPVLEALVARTIRNIETTQEEVRL--LSACVP 654
Score = 103 bits (256), Expect = 4e-21
Identities = 72/219 (32%), Positives = 114/219 (51%), Gaps = 19/219 (8%)
Query: 1086 GCESAHTISFQHLIRPHNETLQTRLQKLNPLPTSALKNPLVESIYPFKYFNPMQTMVFHT 1145
G E H + + + NE LQ ++ LP P+ E FK N +Q+ ++
Sbjct: 441 GYEEVHVPALKPVPFDANE----ELQPVDKLPKYV--QPVFEG---FKTLNRIQSRLYKA 491
Query: 1146 LYHSNVSTFVGSPTGSGKTVVAELAIWHAFRDYPGS---------KVVYIAPMKALVRER 1196
S+ + + +PTG+GKT VA L + + K++Y+APMK+LV+E
Sbjct: 492 ALDSDENMLLCAPTGAGKTNVALLTMMREIGKHINEDGTINAQDFKIIYVAPMKSLVQEM 551
Query: 1197 VNDWRKRITPVTGDRIVELTGDSVPDPQDIKDATIVITTPEKFDGISRNWQTRKFVQNVS 1256
V ++ +R+ + ELTGD + I +++ TPEK+D I+R R FV V
Sbjct: 552 VGNFGRRLA-CYNLTVSELTGDHQLTREQIAATQVIVCTPEKWDIITRKGGERTFVSLVR 610
Query: 1257 LIIMDEIHLLASDRGPILEMIVSRMNYVSSQTKKPIRLL 1295
L+I+DEIHLL +RGP+LE +V+R T++ +RLL
Sbjct: 611 LVIIDEIHLLHDERGPVLEALVARTIRNIETTQEEVRLL 649
>At3g27730 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily
Length = 1113
Score = 201 bits (510), Expect = 1e-50
Identities = 194/726 (26%), Positives = 341/726 (46%), Gaps = 84/726 (11%)
Query: 264 LVKVSDLDEYCRKVFEYDYLNKVQSLVYPVAYNTNGNMLICAPTGAGKTDIALLTILNTI 323
L VSDL R F + Y N +QS +P+ ++++ NM+I APTG+GKT + L IL
Sbjct: 6 LKSVSDLPGNFRSAFSFRYFNSLQSECFPLCFHSDINMIISAPTGSGKTVLFELCILRLF 65
Query: 324 KQFSVINEEGGFDIEYDDFKIIYVAPLKALAAEITDKFARKLSVFDVKVRELTGDMQ-LT 382
+ I++EG F K +Y++P KAL E + +K + + + ELTGD + +
Sbjct: 66 SK--SISKEGSFLHAKGALKTVYISPSKALVQEKLRDWNQKFNSWGISCLELTGDNETYS 123
Query: 383 KREILETQVIVTTPEKWDVVT--RKASGDNDLTSKVKLLILDEVHLLHEDRGSVIESLVA 440
+ I + +I+TTPEK+D V+ R SG S + L+++DEVHLL++ RG+ +E++V+
Sbjct: 124 TKNIQDADIILTTPEKFDAVSRYRVTSGGLGFFSDIALVLIDEVHLLNDPRGAALEAIVS 183
Query: 441 RTLRQVESSQTM-------IRILGLSATLPNFVDVADFLGVNR---------NVGMFY-F 483
R L+ + S+ + +R+L +SAT+PN D+A++L V + MFY F
Sbjct: 184 R-LKILSSNHELRSSTLASVRLLAVSATIPNIEDLAEWLKVPTAGIKSFIIVYLPMFYRF 242
Query: 484 DQSFRPKALEQHLIGCRGKAGSKQCRENTDKVAYEKAVEMMKLGNQVMIFVHSRKDTVKT 543
+ RP L + G G A +K + +EK L + +++ K
Sbjct: 243 GEEMRPVKLTTKVFG-TGYAAAK------NDFLFEKVYSFCILD----LDSRAQEAAQKL 291
Query: 544 ARTLISMARDNYEMDLFTSNDASVTIFQKELSKHKDKDLKELFQSGFGVHHAGMSRSDRN 603
A+T ++ N F + + ++ DK ++ G G R
Sbjct: 292 AQTAMTYGYSN----PFIKSREQLERLREASPMCSDKQMQSYILQG------GPQPRRRA 341
Query: 604 ITEKMFKSGAVNVLVCTATLAWGVNLPADCVIIKGTQVYDSKKGGYTDLGISDVIQIFGR 663
+ E + S + C W N PA C Y + + T + ++ ++ R
Sbjct: 342 LPEWRYPSYLHDQHSC----PW--NQPA-C-------TYSATRKKVTTWNM--IVPLYYR 385
Query: 664 AGRPGFGSDYGTAYLCTSNDRLDHYVDLITQQHPIESRLGAKVVDNLNAEISLGTVTNVE 723
AGRP F D G + T + + Y +L+ +ES+L ++++L AEI T++++
Sbjct: 386 AGRPPF-DDTGMVIIMTRRETVHLYENLLNGCEVVESQLLPCLIEHLTAEIVQLTISDIT 444
Query: 724 EGVKWLGYTYMFVRMKQNPFTYGIDWEEIRNDPQLYEKRRQIIITAARRLHSLQMIVFDE 783
++W+ +Y++VRMK+NP Y I + I D ++ + +++ + L QMI D
Sbjct: 445 RAIEWMKCSYLYVRMKKNPENYAIK-KGIPKD-RVEKHLQELCLQKINELSQYQMIWTDT 502
Query: 784 VSMHFIPKDLGRIASEFYLLNESVE-IFNQVANPRATEADVLAMISMSSEFDSIKFREEE 842
P++ GR+ +++YL E+++ I N + EA L ++ + E I+ R E
Sbjct: 503 DGFVLKPEEPGRLMTKYYLKFETMKYIINTPTSYSLDEA--LHIVCHAEEISWIQLRRNE 560
Query: 843 SNELNKLLDCAVECQISGDVDSSPGKTNILLQA------------YVSQSRINDSALNSD 890
LN ++ E ++ ++ + GK +Q ++D ++ D
Sbjct: 561 KKTLND-VNADKEGRLRFHINDNKGKRKKRIQTREEKLFVLANDWLTGDPSVHDLSMTQD 619
Query: 891 ANYIAQNSARICRALLLIGINRR--WGTFSKVMLDICKSIEKRMWAFDHPLCQFDLPDTI 948
AN I N +RI R + I ++ GT S +L KS+ +++W D P LP
Sbjct: 620 ANSICSNGSRIARCMKEYFIYKKNYKGTLSSTLL--AKSLYQKLWD-DSPYLLKQLPGIG 676
Query: 949 LRNIKA 954
+ KA
Sbjct: 677 MVTAKA 682
Score = 144 bits (362), Expect = 2e-33
Identities = 91/241 (37%), Positives = 132/241 (54%), Gaps = 33/241 (13%)
Query: 1128 SIYPFKYFNPMQTMVFHTLYHSNVSTFVGSPTGSGKTVVAELAIWHAFR---DYPGS--- 1181
S + F+YFN +Q+ F +HS+++ + +PTGSGKTV+ EL I F GS
Sbjct: 18 SAFSFRYFNSLQSECFPLCFHSDINMIISAPTGSGKTVLFELCILRLFSKSISKEGSFLH 77
Query: 1182 -----KVVYIAPMKALVRERVNDWRKRITPVTGDRIVELTGDS-VPDPQDIKDATIVITT 1235
K VYI+P KALV+E++ DW ++ G +ELTGD+ ++I+DA I++TT
Sbjct: 78 AKGALKTVYISPSKALVQEKLRDWNQKFNS-WGISCLELTGDNETYSTKNIQDADIILTT 136
Query: 1236 PEKFDGISRNWQTR---KFVQNVSLIIMDEIHLLASDRGPILEMIVSRMNYVS------S 1286
PEKFD +SR T F +++L+++DE+HLL RG LE IVSR+ +S S
Sbjct: 137 PEKFDAVSRYRVTSGGLGFFSDIALVLIDEVHLLNDPRGAALEAIVSRLKILSSNHELRS 196
Query: 1287 QTKKPIRLLGMSTAVSNAFDMASWLGVKGNGL-----------YNFPSSVRPVPLKMYID 1335
T +RLL +S + N D+A WL V G+ Y F +RPV L +
Sbjct: 197 STLASVRLLAVSATIPNIEDLAEWLKVPTAGIKSFIIVYLPMFYRFGEEMRPVKLTTKVF 256
Query: 1336 G 1336
G
Sbjct: 257 G 257
Score = 64.7 bits (156), Expect = 1e-09
Identities = 36/120 (30%), Positives = 61/120 (50%)
Query: 1493 ILQMMGRAGRPAYDTSGTAIVYTKESKKMFYKHFLNVGFPVESSLHKVLDDHMGAEIASG 1552
I+ + RAGRP +D +G I+ T+ Y++ LN VES L L +H+ AEI
Sbjct: 379 IVPLYYRAGRPPFDDTGMVIIMTRRETVHLYENLLNGCEVVESQLLPCLIEHLTAEIVQL 438
Query: 1553 TISTKQEALDFLNWTFLFRRAHHNPTYYGINDDTSTSGINKYLSDLVNNTLDNLKESRCV 1612
TIS A++++ ++L+ R NP Y I + K+L +L ++ L + + +
Sbjct: 439 TISDITRAIEWMKCSYLYVRMKKNPENYAIKKGIPKDRVEKHLQELCLQKINELSQYQMI 498
>7299675 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfamily
Length = 2059
Score = 126 bits (316), Expect = 4e-28
Identities = 129/496 (26%), Positives = 225/496 (45%), Gaps = 54/496 (10%)
Query: 1157 SPTGSGKTVVAELAIWHAFRDYPGSKVVYIAPMKALVRERVNDWRKRITPVTGDRIVELT 1216
+PT +GKT+V+E+ + + G KV+ I P ++VRE++ + +TP G R+
Sbjct: 256 APTSAGKTLVSEILMLKTVLER-GKKVLLILPFISVVREKMFYMQDLLTPA-GYRVEGFY 313
Query: 1217 GDSVPDPQDIKDATIVITTPEKFDGISRNWQTRKFVQNVSLIIMDEIHLLASD-RGPILE 1275
G P P + + I T EK + I + ++ + ++++DE+HL++ RG ILE
Sbjct: 314 GGYTP-PGGFESLHVAICTIEKANSIVNKLMEQGKLETIGMVVVDEVHLISDKGRGYILE 372
Query: 1276 MIVSRMNYVSSQTKKPIRLLGMSTAVSNAFDMASWLGVKGNGLYNFPSSVRPVPLKMYI- 1334
++++++ Y+S + I+++ MS + N + SWL + + ++ RPV LK I
Sbjct: 373 LLLAKILYMSRRNGLQIQVITMSATLENVQLLQSWLDAE-----LYITNYRPVALKEMIK 427
Query: 1335 --------------DGFPDNLNFCPLMKTMNKPAFMAIKQHSPEKPVLLFVASRRQTRLT 1380
D + L + A + I+ V++F S+
Sbjct: 428 VGTVIYDHRLKLVRDVAKQKVLLKGLENDSDDVALLCIETLLEGCSVIVFCPSKDWCENL 487
Query: 1381 ALDL---IHLCGMED-----------NPRRFLHIDDEEELQYYISKVSDDTLKLSLQFGI 1426
A+ L IH+ + NPR + +++L+ I D + ++ +
Sbjct: 488 AVQLATAIHVQIKSETVLGQRLRTNLNPRAIAEV--KQQLRD-IPTGLDGVMSKAITYAC 544
Query: 1427 GLHHAGLIESDRAISHELFLRSKIQILVATSTLAWGVNLPAHLVIIKGTQFFDAKIEGYR 1486
HHAGL +R I F +++LVATSTL+ GVNLPA V+I+ F G +
Sbjct: 545 AFHHAGLTTEERDIIEASFKAGALKVLVATSTLSSGVNLPARRVLIRSPLF------GGK 598
Query: 1487 DMDLTDILQMMGRAGRPAYDTSGTAIVYTKE-SKKMFYKHFLNVGFPVESSLHKVLDDHM 1545
M QM+GRAGR DT G +I+ E + +M ++ P+ S L H+
Sbjct: 599 QMSSLTYRQMIGRAGRMGKDTLGESILICNEINARMGRDLVVSELQPITSCLDMDGSTHL 658
Query: 1546 GAE----IASGTISTKQEALDFLNWTFLFRRAHHNPTYYGINDDTSTSGINKYLSDLVNN 1601
I+SG +TK++ F+N T L + + ++++ + IN L LV
Sbjct: 659 KRALLEVISSGVANTKEDIDFFVNCTLLSAQKAFHAKEKPPDEESDANYINDALDFLVEY 718
Query: 1602 TLDNLK--ESRCVEIY 1615
L+ E R +Y
Sbjct: 719 EFVRLQRNEERETAVY 734
Score = 87.8 bits (216), Expect = 2e-16
Identities = 110/472 (23%), Positives = 200/472 (42%), Gaps = 60/472 (12%)
Query: 285 KVQSLVYPVAYNTNGNMLICAPTGAGKTDIALLTILNTIKQFSVINEEGGFDIEYDDFKI 344
+V+ L P + N++ APT AGKT ++ + +L T+ E G K+
Sbjct: 236 QVECLSKPRLLFEHCNLVYSAPTSAGKTLVSEILMLKTVL------ERGK--------KV 281
Query: 345 IYVAPLKALAAEITDKFARKLSVFDVKVRELTGDMQLTKREILETQVIVTTPEKWDVVTR 404
+ + P ++ E L+ +V G V + T EK + +
Sbjct: 282 LLILPFISVVREKMFYMQDLLTPAGYRVEGFYGGYT-PPGGFESLHVAICTIEKANSIVN 340
Query: 405 KASGDNDLTSKVKLLILDEVHLLHED-RGSVIESLVARTLRQVESSQTMIRILGLSATLP 463
K L + + ++++DEVHL+ + RG ++E L+A+ L + I+++ +SATL
Sbjct: 341 KLMEQGKLET-IGMVVVDEVHLISDKGRGYILELLLAKILYMSRRNGLQIQVITMSATLE 399
Query: 464 NFVDVADFLGVNRNVGMFYFDQSFRPKALEQHL-IG--------------CRGKAGSKQC 508
N + +L + ++RP AL++ + +G + K K
Sbjct: 400 NVQLLQSWLDAELYI------TNYRPVALKEMIKVGTVIYDHRLKLVRDVAKQKVLLKGL 453
Query: 509 RENTDKVAYEKAVEMMKLGNQVMIFVHSRKDTVKTARTLISMARDNYEMDLFTSNDASVT 568
++D VA +E + G V++F S+ A L + + +
Sbjct: 454 ENDSDDVAL-LCIETLLEGCSVIVFCPSKDWCENLAVQLATAIHVQIKSETVLGQRLRTN 512
Query: 569 IFQKELSKHK----------DKDLKELFQSGFGVHHAGMSRSDRNITEKMFKSGAVNVLV 618
+ + +++ K D + + HHAG++ +R+I E FK+GA+ VLV
Sbjct: 513 LNPRAIAEVKQQLRDIPTGLDGVMSKAITYACAFHHAGLTTEERDIIEASFKAGALKVLV 572
Query: 619 CTATLAWGVNLPADCVIIKGTQVYDSKKGGYTDLGISDVIQIFGRAGRPGFGSDYGTAYL 678
T+TL+ GVNLPA V+I+ S G + Q+ GRAGR G + + +
Sbjct: 573 ATSTLSSGVNLPARRVLIR------SPLFGGKQMSSLTYRQMIGRAGRMGKDTLGESILI 626
Query: 679 CTS-NDRLDHYVDLITQQHPIESRL---GAKVVDNLNAEISLGTVTNVEEGV 726
C N R+ + ++++ PI S L G+ + E+ V N +E +
Sbjct: 627 CNEINARMGRDL-VVSELQPITSCLDMDGSTHLKRALLEVISSGVANTKEDI 677
>Hs16418479 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfamily
Length = 2724
Score = 114 bits (286), Expect = 1e-24
Identities = 116/460 (25%), Positives = 200/460 (43%), Gaps = 61/460 (13%)
Query: 1157 SPTGSGKTVVAELAIWHAFRDYPGSKVVYIAPMKALVRERVNDWRKRITPVTGDRIVELT 1216
+PT +GKT+VAEL I + K ++I P ++ +E+ + + + G ++
Sbjct: 248 APTSAGKTLVAELLILKRVLEMR-KKALFILPFVSVAKEK-KYYLQSLFQEVGIKVDGYM 305
Query: 1217 GDSVPDPQDIKDATIVITTPEKFDGISRNWQTRKFVQNVSLIIMDEIHLLA-SDRGPILE 1275
G + P + I + T E+ +G+ + + ++++DE+H+L S RG +LE
Sbjct: 306 GSTSPS-RHFSSLDIAVCTIERANGLINRLIEENKMDLLGMVVVDELHMLGDSHRGYLLE 364
Query: 1276 MIVSRMNYVS-----------SQTKKPIRLLGMSTAVSNAFDMASWLGVKGNGLYNFPSS 1324
++++++ Y++ S ++++GMS + N +ASWL + LY+ +
Sbjct: 365 LLLTKICYITRKSASCQADLASSLSNAVQIVGMSATLPNLELVASWLNAE---LYH--TD 419
Query: 1325 VRPVPL--------KMYIDGFPDNLNFCPLMKTMNKP---AFMAIKQHSPEKPVLLFVAS 1373
RPVPL +Y F P+++ + + VLLF S
Sbjct: 420 FRPVPLLESVKVGNSIYDSSMKLVREFEPMLQVKGDEDHVVSLCYETICDNHSVLLFCPS 479
Query: 1374 RRQTRLTA-------LDLIH------LCGMEDNPRRFLHIDDEEELQYYISKVS---DDT 1417
++ A +L H L + P L + E+ + ++ D
Sbjct: 480 KKWCEKLADIIAREFYNLHHQAEGEGLVKPSECPPVILEQKELLEVMDQLRRLPSGLDSV 539
Query: 1418 LKLSLQFGIGLHHAGLIESDRAISHELFLRSKIQILVATSTLAWGVNLPAHLVIIKGTQF 1477
L+ ++ +G+ HHAGL +R I F + I++L ATSTL+ GVNLPA VII+
Sbjct: 540 LQKTVPWGVAFHHAGLTFEERDIIEGAFRQGLIRVLAATSTLSSGVNLPARRVIIR---- 595
Query: 1478 FDAKIEGYRDMDLTDILQMMGRAGRPAYDTSGTAIVYTKESKKMFYKHFLNVGFPVESSL 1537
I G R +D+ QM+GRAGR DT G+ ++ K PV S L
Sbjct: 596 --TPIFGGRPLDILTYKQMVGRAGRKGVDTVGSILICKNSEKSKGIALLQGSLKPVRSCL 653
Query: 1538 HKVLDDHMGAE--------IASGTISTKQEALDFLNWTFL 1569
+ + + I G ST Q+ + TFL
Sbjct: 654 QRREGEEVTGSMIRAILEIIVGGVASTSQDMHTYAACTFL 693
Score = 94.4 bits (233), Expect = 2e-18
Identities = 126/490 (25%), Positives = 213/490 (42%), Gaps = 82/490 (16%)
Query: 300 NMLICAPTGAGKTDIALLTILNTIKQFSVINEEGGFDIEYDDFKIIYVAPLKALAAEITD 359
N++ APT AGKT +A L IL + + K +++ P ++A E
Sbjct: 243 NLVYSAPTSAGKTLVAELLILKRVLEMRK--------------KALFILPFVSVAKEKKY 288
Query: 360 KFARKLSVFDVKVRELTGDMQLTKREILETQVIVTTPEKWDVVTRKASGDNDLTSKVKLL 419
+KV G R + V T E+ + + + +N + + ++
Sbjct: 289 YLQSLFQEVGIKVDGYMGSTS-PSRHFSSLDIAVCTIERANGLINRLIEENKM-DLLGMV 346
Query: 420 ILDEVHLLHED-RGSVIESLVARTL---RQVESSQT--------MIRILGLSATLPNFVD 467
++DE+H+L + RG ++E L+ + R+ S Q ++I+G+SATLPN
Sbjct: 347 VVDELHMLGDSHRGYLLELLLTKICYITRKSASCQADLASSLSNAVQIVGMSATLPNLEL 406
Query: 468 VADFLGVNRNVGMFYFDQSFRP-KALEQHLIG----------CRGKAGSKQCRENTDKVA 516
VA +L N +++ D FRP LE +G R Q + + D V
Sbjct: 407 VASWL----NAELYHTD--FRPVPLLESVKVGNSIYDSSMKLVREFEPMLQVKGDEDHVV 460
Query: 517 YEKAVEMMKLGNQVMIFVHSRKDTVKTARTLISMARDNYEMD--------LFTSNDASVT 568
E + + V++F S+K K A + AR+ Y + + S V
Sbjct: 461 -SLCYETICDNHSVLLFCPSKKWCEKLADII---AREFYNLHHQAEGEGLVKPSECPPVI 516
Query: 569 IFQKELSKHKDK----------DLKELFQSGFGVHHAGMSRSDRNITEKMFKSGAVNVLV 618
+ QKEL + D+ L++ G HHAG++ +R+I E F+ G + VL
Sbjct: 517 LEQKELLEVMDQLRRLPSGLDSVLQKTVPWGVAFHHAGLTFEERDIIEGAFRQGLIRVLA 576
Query: 619 CTATLAWGVNLPADCVIIKGTQVYDSKKGGYTDLGISDVIQIFGRAGRPGFGSDYGTAYL 678
T+TL+ GVNLPA VII+ T ++ G L I Q+ GRAGR G + G+ +
Sbjct: 577 ATSTLSSGVNLPARRVIIR-TPIF-----GGRPLDILTYKQMVGRAGRKGVDT-VGSILI 629
Query: 679 CTSNDRLDHYVDLITQQHPIES----RLGAKVVDNL---NAEISLGTVTNVEEGV-KWLG 730
C ++++ L P+ S R G +V ++ EI +G V + + + +
Sbjct: 630 CKNSEKSKGIALLQGSLKPVRSCLQRREGEEVTGSMIRAILEIIVGGVASTSQDMHTYAA 689
Query: 731 YTYMFVRMKQ 740
T++ MK+
Sbjct: 690 CTFLAASMKE 699
>At1g59760 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box superfamily
Length = 988
Score = 114 bits (284), Expect = 2e-24
Identities = 130/513 (25%), Positives = 215/513 (41%), Gaps = 113/513 (22%)
Query: 1068 SDPLPPQVI------VKVVSDTWIGCESAHTISFQHLIRPHNETLQTRLQKLNPLPTSAL 1121
SD PPQ + +++++ +GC H +SF P N PL S
Sbjct: 13 SDSAPPQKVQREDDSTQIINEELVGC--VHDVSF-----PENYV---------PLAPSVH 56
Query: 1122 KNPLVESIYPFKYFNPMQTMVFHTLYHSNVSTFVGSPTGSGKTVVAELAIWHAFRDYPGS 1181
P + +PF + Q+ L + S V + T +GKTVVA AI + ++
Sbjct: 57 NKPPAKD-FPFT-LDSFQSEAIKCLDNGE-SVMVSAHTSAGKTVVASYAIAMSLKE--NQ 111
Query: 1182 KVVYIAPMKALVRERVNDWRKRITPVTGDRIVELTGDSVPDPQDIKDATIVITTPEKFDG 1241
+V+Y +P+KAL ++ D+++ + V +TGD DP +A+ ++ T E
Sbjct: 112 RVIYTSPIKALSNQKYRDFKEEFSDVG-----LMTGDVTIDP----NASCLVMTTEILR- 161
Query: 1242 ISRNWQTRKFVQNVSLIIMDEIHLLA-SDRGPILEMIVSRMNYVSSQTKKPIRLLGMSTA 1300
S ++ + ++ V+ II DE+H + S+RG + E + K R + +S
Sbjct: 162 -SMQYKGSEIMREVAWIIFDEVHYMRDSERGVVWEESI-------VMAPKNSRFVFLSAT 213
Query: 1301 VSNAFDMASWLG-VKGNGLYNFPSSVRPVPLKMYI--------------------DGFPD 1339
V NA + A W+ V + + RP PL+ Y+ D F
Sbjct: 214 VPNAKEFADWVAKVHQQPCHIVYTDYRPTPLQHYVFPAGGNGLYLVVDEKSKFHEDSFQK 273
Query: 1340 NLN-FCPLMKTMNK-------------------PAFMAIKQ--HSPEKPVLLFVASRRQT 1377
+LN P ++ K F +K PV+LF S+++
Sbjct: 274 SLNALVPTNESDKKRDNGKFQKGLVIGKLGEESDIFKLVKMIIQRQYDPVILFSFSKKEC 333
Query: 1378 RLTALDLIHLCGMEDNPRRFLHIDDEEE-----LQYYISKVSDDTLKLS--------LQF 1424
A+ + + L+ DDE++ I +SDD KL L+
Sbjct: 334 EALAMQM---------SKMVLNSDDEKDAVETIFASAIDMLSDDDKKLPQVSNILPILKR 384
Query: 1425 GIGLHHAGLIESDRAISHELFLRSKIQILVATSTLAWGVNLPAHLVIIKGTQFFDAKIEG 1484
GIG+HH+GL+ + + LF I+ L AT T + G+N+PA V+ + FD +
Sbjct: 385 GIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDG--DK 442
Query: 1485 YRDMDLTDILQMMGRAGRPAYDTSGTAIVYTKE 1517
+R + + +QM GRAGR D G I+ E
Sbjct: 443 FRWLSSGEYIQMSGRAGRRGIDKRGICILMVDE 475
Score = 91.7 bits (226), Expect = 1e-17
Identities = 96/419 (22%), Positives = 170/419 (39%), Gaps = 90/419 (21%)
Query: 300 NMLICAPTGAGKTDIALLTILNTIKQFSVINEEGGFDIEYDDFKIIYVAPLKALAAEITD 359
++++ A T AGKT +A I ++K+ + ++IY +P+KAL+ +
Sbjct: 84 SVMVSAHTSAGKTVVASYAIAMSLKE---------------NQRVIYTSPIKALSNQKYR 128
Query: 360 KFARKLSVFDVKVRELTGDMQLTKREILETQVIVTTPEKWDVVTRKASGDNDLTSKVKLL 419
F + S V +TGD+ + +V T E + K S ++ +V +
Sbjct: 129 DFKEEFS----DVGLMTGDVTIDPN----ASCLVMTTEILRSMQYKGS---EIMREVAWI 177
Query: 420 ILDEVHLLHE-DRGSVIESLVARTLRQVESSQTMIRILGLSATLPNFVDVADFLGVNRNV 478
I DEVH + + +RG V E + + R + LSAT+PN + AD++
Sbjct: 178 IFDEVHYMRDSERGVVWEESIVMAPKNS-------RFVFLSATVPNAKEFADWVAKVHQQ 230
Query: 479 GMFYFDQSFRPKALEQHLIGCRGKA------------------------GSKQCRENTDK 514
+RP L+ ++ G + + + D
Sbjct: 231 PCHIVYTDYRPTPLQHYVFPAGGNGLYLVVDEKSKFHEDSFQKSLNALVPTNESDKKRDN 290
Query: 515 VAYEKAVEMMKLGNQ-----------------VMIFVHSRKDTVKTARTLISMARDNYEM 557
++K + + KLG + V++F S+K+ A + M ++ +
Sbjct: 291 GKFQKGLVIGKLGEESDIFKLVKMIIQRQYDPVILFSFSKKECEALAMQMSKMVLNSDD- 349
Query: 558 DLFTSNDASVTIFQKELSKHKDKDLK--------ELFQSGFGVHHAGMSRSDRNITEKMF 609
DA TIF + D D K + + G GVHH+G+ + + E +F
Sbjct: 350 ----EKDAVETIFASAIDMLSDDDKKLPQVSNILPILKRGIGVHHSGLLPILKEVIEILF 405
Query: 610 KSGAVNVLVCTATLAWGVNLPADCVIIKGTQVYDSKKGGYTDLGISDVIQIFGRAGRPG 668
+ G + L T T + G+N+PA V+ + +D K + L + IQ+ GRAGR G
Sbjct: 406 QEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDK--FRWLSSGEYIQMSGRAGRRG 462
>SPAC6F12.16c [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box superfamily
Length = 1117
Score = 105 bits (263), Expect = 6e-22
Identities = 117/455 (25%), Positives = 197/455 (42%), Gaps = 78/455 (17%)
Query: 1116 LPTSALKNPLVES-IYPFKYFNPMQTMVFHTLYHSNVSTFVGSPTGSGKTVVAELAIWHA 1174
+P S K+P+ + YPF +P Q + + S V + T +GKTVVAE A+ +
Sbjct: 180 VPISKHKSPIPPARTYPFT-LDPFQAVSIACIERQE-SVLVSAHTSAGKTVVAEYAVAQS 237
Query: 1175 FRDYPGSKVVYIAPMKALVRERVNDWRKRITPVTGDRIVELTGDSVPDPQDIKDATIVIT 1234
RD +V+Y +P+KAL ++ + + GD + +TGD +P DAT ++
Sbjct: 238 LRDK--QRVIYTSPIKALSNQKYRE----LLAEFGD-VGLMTGDVTINP----DATCLVM 286
Query: 1235 TPEKFDGISRNWQTRKFVQNVSLIIMDEIHLLAS-DRGPILEMIVSRMNYVSSQTKKPIR 1293
T E S ++ + ++ V+ +I DEIH + +RG + E + + S
Sbjct: 287 TTEILR--SMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDKS-------H 337
Query: 1294 LLGMSTAVSNAFDMASWLG-VKGNGLYNFPSSVRPVPLKMYI-----DGF----PDNLNF 1343
+ +S + NA A W+ + + + RP PL+ Y+ DG + NF
Sbjct: 338 FVFLSATIPNAMQFAEWITKIHRQPCHVVYTDFRPTPLQHYLFPSGSDGIHLVVDEKSNF 397
Query: 1344 ----------CPLMKTMNKPAFMAIKQHSPE--------------------------KPV 1367
+ K + PA MA K ++ + PV
Sbjct: 398 REENFQRAMSALMEKQGDDPAAMATKGNAKKGKTGKGGVKGPSDIYKIVKMIMVKNYNPV 457
Query: 1368 LLFVASRRQTRLTALDLIHLCGMEDNPRRFLHIDDEEELQYYISKVSDDTLKLS-----L 1422
++F S+R+ AL + L M D R L +S+ + ++ L
Sbjct: 458 IVFSFSKRECEALALQMSKL-DMNDQTERDLVTTIFNNAVNQLSEKDRELPQIEHILPLL 516
Query: 1423 QFGIGLHHAGLIESDRAISHELFLRSKIQILVATSTLAWGVNLPAHLVIIKGTQFFDAKI 1482
+ GIG+HH+GL+ + + LF +++L AT T + G+N+PA V+ + FD K
Sbjct: 517 RRGIGIHHSGLLPILKEVIEILFQEGLLKVLFATETFSIGLNMPAKTVVFTNVRKFDGKT 576
Query: 1483 EGYRDMDLTDILQMMGRAGRPAYDTSGTAIVYTKE 1517
+R + + +QM GRAGR D G I+ E
Sbjct: 577 --FRWISGGEYIQMSGRAGRRGLDDRGIVILMIDE 609
Score = 89.0 bits (219), Expect = 7e-17
Identities = 96/418 (22%), Positives = 179/418 (41%), Gaps = 85/418 (20%)
Query: 300 NMLICAPTGAGKTDIALLTILNTIKQFSVINEEGGFDIEYDDFKIIYVAPLKALAAEITD 359
++L+ A T AGKT +A + +++ D ++IY +P+KAL+ +
Sbjct: 215 SVLVSAHTSAGKTVVAEYAVAQSLR---------------DKQRVIYTSPIKALSNQ--- 256
Query: 360 KFARKLSVFDVKVRELTGDMQLTKREILETQVIVTTPEKWDVVTRKASGDNDLTSKVKLL 419
K+ L+ F V +TGD+ + T +++TT +++ +++ +V +
Sbjct: 257 KYRELLAEFG-DVGLMTGDVTINPDA---TCLVMTT----EILRSMLYRGSEVMREVAWV 308
Query: 420 ILDEVHLLHE-DRGSVIESLVARTLRQVESSQTMIRILGLSATLPNFVDVADFLGVNRNV 478
I DE+H + + +RG V E + + + S + LSAT+PN + A+++
Sbjct: 309 IFDEIHYMRDKERGVVWEETI---ILLPDKSHFVF----LSATIPNAMQFAEWITKIHRQ 361
Query: 479 GMFYFDQSFRPKALEQHLIGC--------------------------------------- 499
FRP L+ +L
Sbjct: 362 PCHVVYTDFRPTPLQHYLFPSGSDGIHLVVDEKSNFREENFQRAMSALMEKQGDDPAAMA 421
Query: 500 ------RGKAGSKQCRENTDKVAYEKAVEMMKLGNQVMIFVHSRKDTVKTARTLISM-AR 552
+GK G + +D K + M+K N V++F S+++ A + +
Sbjct: 422 TKGNAKKGKTGKGGVKGPSDIYKIVKMI-MVKNYNPVIVFSFSKRECEALALQMSKLDMN 480
Query: 553 DNYEMDLFTS--NDASVTIFQKELSKHKDKDLKELFQSGFGVHHAGMSRSDRNITEKMFK 610
D E DL T+ N+A + +K+ + + + L + G G+HH+G+ + + E +F+
Sbjct: 481 DQTERDLVTTIFNNAVNQLSEKDRELPQIEHILPLLRRGIGIHHSGLLPILKEVIEILFQ 540
Query: 611 SGAVNVLVCTATLAWGVNLPADCVIIKGTQVYDSKKGGYTDLGISDVIQIFGRAGRPG 668
G + VL T T + G+N+PA V+ + +D K + G + IQ+ GRAGR G
Sbjct: 541 EGLLKVLFATETFSIGLNMPAKTVVFTNVRKFDGKTFRWISGG--EYIQMSGRAGRRG 596
>CE27019 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfamily
Length = 923
Score = 104 bits (259), Expect = 2e-21
Identities = 109/437 (24%), Positives = 189/437 (42%), Gaps = 58/437 (13%)
Query: 300 NMLICAPTGAGKTDIALLTILNTIKQFSVINEEGGFDIEYDDFKIIYVAPLKALAAEITD 359
N ++ PTGAGKT IA + +L +++ + I V P A+ E
Sbjct: 186 NCILSLPTGAGKTLIAEVLMLRE----AIVRKRNA----------ILVLPYVAIVQEKIS 231
Query: 360 KFARKLSVFDVKVRELT---GDMQLTKREILETQVIVTTPEKWDVVTRKASGDNDLTSKV 416
A F + + E G KR V V T EK +++ L +V
Sbjct: 232 ALAPFEDAFGINIEEYASNKGRFPPIKRR-KRVSVYVATIEKANMLINSLITQGQL-DRV 289
Query: 417 KLLILDEVHLLHED-RGSVIESLVARTLRQVESSQTMIRILGLSATLPNFVDVADFLGVN 475
++++DE+H++ + RG+++E L+A+ L + +I+G+SATLPN D+ L
Sbjct: 290 GMVVVDELHMIGDGGRGAILEQLLAKFLYKGTG-----QIVGMSATLPNIDDLKFALRA- 343
Query: 476 RNVGMFYFDQSFRPKALEQ--------HLIGCRGK---AGSKQCR--ENTDKVAYEKAVE 522
F + +FRP L + H + G AG ++TD + +
Sbjct: 344 -----FVYSTNFRPVELTEFVKIGQTMHQVSENGDLNPAGDLPTNNLKSTDPDGICQLLA 398
Query: 523 MMKLGNQVMIFVHSRKDTVKTARTLISMARDNYEMDLFTSNDASVTIFQKELSKHK-DKD 581
+ N +IF ++K+ A + + +DA + + + + D
Sbjct: 399 KLIPKNSAVIFCPNKKNCENVAVLIAKTLPAHIRQAKRAESDAFLQSYLSDNDDERMDAV 458
Query: 582 LKELFQSGFGVHHAGMSRSDRNITEKMFKSGAVNVLVCTATLAWGVNLPADCVIIKGTQV 641
LK+ SG HH+G+++ +R E F G + V+ T+TLA GVNLP VIIK V
Sbjct: 459 LKQCILSGVAYHHSGLTQDERKCVEAAFMEGLIYVVCATSTLAAGVNLPVRRVIIKAPMV 518
Query: 642 YDSKKGGYTDLGISDVIQIFGRAGRPGFGSDYGTAYLCTSNDRLDHYVDLITQQHPIESR 701
G LG + +Q+ GRAGR GF + + + + + +++ P
Sbjct: 519 ------GRERLGKAQYLQMAGRAGRAGFDTKGDCITIIKAGEEERWFREMLKSDIP---- 568
Query: 702 LGAKVVDNLNAEISLGT 718
+ + +L++E S+G+
Sbjct: 569 ---RCMSSLSSEESMGS 582
Score = 103 bits (256), Expect = 4e-21
Identities = 99/399 (24%), Positives = 179/399 (44%), Gaps = 46/399 (11%)
Query: 1158 PTGSGKTVVAELAIWHAFRDYPGSK--VVYIAPMKALVRERVNDWRKRITPVTGDRIVEL 1215
PTG+GKT++AE+ + R+ K + + P A+V+E+++ G I E
Sbjct: 192 PTGAGKTLIAEVLM---LREAIVRKRNAILVLPYVAIVQEKISALAP-FEDAFGINIEEY 247
Query: 1216 TGDS--VPDPQDIKDATIVITTPEKFDGISRNWQTRKFVQNVSLIIMDEIHLLASD-RGP 1272
+ P + K ++ + T EK + + + T+ + V ++++DE+H++ RG
Sbjct: 248 ASNKGRFPPIKRRKRVSVYVATIEKANMLINSLITQGQLDRVGMVVVDELHMIGDGGRGA 307
Query: 1273 ILEMIVSRMNYVSSQTKKPIRLLGMSTAVSNAFDMASWLGVKGNGLYNFPSSVRPVPLKM 1332
ILE ++++ Y K +++GMS + N D+ L + + ++ RPV L
Sbjct: 308 ILEQLLAKFLY-----KGTGQIVGMSATLPNIDDLKFALRA-----FVYSTNFRPVELTE 357
Query: 1333 YID------GFPDNLNFCP--------LMKTMNKPAFMAIKQHSPEKPVLLFVASRRQTR 1378
++ +N + P L T + + P+ ++F +++
Sbjct: 358 FVKIGQTMHQVSENGDLNPAGDLPTNNLKSTDPDGICQLLAKLIPKNSAVIFCPNKKNCE 417
Query: 1379 LTALDLIHLCGMEDNPRRFLHIDDEEELQYYISKVSDD----TLKLSLQFGIGLHHAGLI 1434
A+ + + + R+ + + LQ Y+S D+ LK + G+ HH+GL
Sbjct: 418 NVAVLIAKT--LPAHIRQAKRAESDAFLQSYLSDNDDERMDAVLKQCILSGVAYHHSGLT 475
Query: 1435 ESDRAISHELFLRSKIQILVATSTLAWGVNLPAHLVIIKGTQFFDAKIEGYRDMDLTDIL 1494
+ +R F+ I ++ ATSTLA GVNLP VIIK A + G + L
Sbjct: 476 QDERKCVEAAFMEGLIYVVCATSTLAAGVNLPVRRVIIK------APMVGRERLGKAQYL 529
Query: 1495 QMMGRAGRPAYDTSGTAIVYTKE-SKKMFYKHFLNVGFP 1532
QM GRAGR +DT G I K ++ +++ L P
Sbjct: 530 QMAGRAGRAGFDTKGDCITIIKAGEEERWFREMLKSDIP 568
>At2g06990 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box superfamily
Length = 996
Score = 104 bits (259), Expect = 2e-21
Identities = 120/478 (25%), Positives = 198/478 (41%), Gaps = 94/478 (19%)
Query: 1115 PLPTSALKNPLVESIYPFKYFNPMQTMVFHTLYHSNVSTFVGSPTGSGKTVVAELAIWHA 1174
P + L YPFK +P Q++ L S V + T +GKT VAE AI A
Sbjct: 51 PTKEETIHGTLDNPTYPFK-LDPFQSVSVACLERKE-SILVSAHTSAGKTAVAEYAIAMA 108
Query: 1175 FRDYPGSKVVYIAPMKALVRERVNDWRKRITPVTGDRIVELTGDSVPDPQDIKDATIVIT 1234
FRD +V+Y +P+KAL ++ + + V +TGD P +A+ ++
Sbjct: 109 FRDK--QRVIYTSPLKALSNQKYRELQHEFKDVG-----LMTGDVTLSP----NASCLVM 157
Query: 1235 TPEKFDGISRNWQTRKFVQNVSLIIMDEIHLLAS-DRGPILEMIVSRMNYVSSQTKKPIR 1293
T E + ++ + ++ V+ +I DEIH + +RG + E + + I+
Sbjct: 158 TTEILRAML--YRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL-------PPAIK 208
Query: 1294 LLGMSTAVSNAFDMASWLGVKGNGLYNFPSSV-----RPVPLKMYIDGFP---------- 1338
++ +S +SNA + A W+ L+ P V RP PL+ Y FP
Sbjct: 209 MVFLSATMSNATEFAEWICY----LHKQPCHVVYTDFRPTPLQHY--AFPMGGGGLYLVV 262
Query: 1339 -DNL-----NFCPLMKTMNKP----------------------------AFMAIKQHSPE 1364
DN +F + T KP + +K
Sbjct: 263 DDNEQFREDSFVKMQDTFPKPKSNDGKKSANGKSGGRGAKGGGGPGDSDVYKIVKMIMER 322
Query: 1365 K--PVLLFVASRRQTRLTALDLIHLCGMEDNPRRFLHIDDEEELQYYISKVSDDTLKLS- 1421
K PV++F SRR+ AL + L D + + E+ + ++++ L
Sbjct: 323 KFEPVIIFSFSRRECEQHALSMSKLDFNTDEEKEVV----EQVFNNAMQCLNEEDRSLPA 378
Query: 1422 -------LQFGIGLHHAGLIESDRAISHELFLRSKIQILVATSTLAWGVNLPAHLVIIKG 1474
LQ GI +HH+GL+ + + LF ++ L AT T A G+N+PA V+
Sbjct: 379 IELMLPLLQRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTA 438
Query: 1475 TQFFDAKIEGYRDMDLTDILQMMGRAGRPAYDTSGTAIVYTKESKKMFYKHFLNVGFP 1532
+ +D + +R + + +QM GRAGR D G I+ E +M + +G P
Sbjct: 439 VKKWDG--DSHRYIGSGEYIQMSGRAGRRGKDERGICIIMIDEQMEMNTLRDMMLGKP 494
Score = 79.3 bits (194), Expect = 6e-14
Identities = 98/419 (23%), Positives = 176/419 (41%), Gaps = 88/419 (21%)
Query: 300 NMLICAPTGAGKTDIALLTILNTIKQFSVINEEGGFDIEYDDFKIIYVAPLKALAAEITD 359
++L+ A T AGKT +A I + D ++IY +PLKAL+ +
Sbjct: 86 SILVSAHTSAGKTAVAEYAIAMAFR---------------DKQRVIYTSPLKALSNQ--- 127
Query: 360 KFARKLSVFDVKVRELTGDMQLTKREILETQVIVTTPEKWDVVTRKASGDNDLTSKVKLL 419
K+ R+L V +TGD+ L+ + +++TT +++ +++ +V +
Sbjct: 128 KY-RELQHEFKDVGLMTGDVTLSPNA---SCLVMTT----EILRAMLYRGSEVLKEVAWV 179
Query: 420 ILDEVHLLHE-DRGSVIESLVARTLRQVESSQTMIRILGLSATLPNFVDVADFLGVNRNV 478
I DE+H + + +RG V E + I+++ LSAT+ N + A+++
Sbjct: 180 IFDEIHYMKDRERGVVWEESIIFL-------PPAIKMVFLSATMSNATEFAEWICYLHKQ 232
Query: 479 GMFYFDQSFRPKALEQHLIGCRGKA------GSKQCRENT-----DKVAYEKAVEMMKLG 527
FRP L+ + G ++Q RE++ D K+ + K
Sbjct: 233 PCHVVYTDFRPTPLQHYAFPMGGGGLYLVVDDNEQFREDSFVKMQDTFPKPKSNDGKKSA 292
Query: 528 N--------------------------------QVMIFVHSRKDTVKTARTLISMARDNY 555
N V+IF SR++ + A +SM++ ++
Sbjct: 293 NGKSGGRGAKGGGGPGDSDVYKIVKMIMERKFEPVIIFSFSRRECEQHA---LSMSKLDF 349
Query: 556 EMDLFTS------NDASVTIFQKELSKHKDKDLKELFQSGFGVHHAGMSRSDRNITEKMF 609
D N+A + +++ S + + L Q G VHH+G+ + + E +F
Sbjct: 350 NTDEEKEVVEQVFNNAMQCLNEEDRSLPAIELMLPLLQRGIAVHHSGLLPVIKELVELLF 409
Query: 610 KSGAVNVLVCTATLAWGVNLPADCVIIKGTQVYDSKKGGYTDLGISDVIQIFGRAGRPG 668
+ G V L T T A G+N+PA V+ + +D Y +G + IQ+ GRAGR G
Sbjct: 410 QEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRY--IGSGEYIQMSGRAGRRG 466
>CE07565 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfamily
Length = 273
Score = 103 bits (258), Expect = 2e-21
Identities = 76/278 (27%), Positives = 140/278 (50%), Gaps = 22/278 (7%)
Query: 418 LLILDEVHLLHED-RGSVIESLVARTLRQVESSQTMIRILGLSATLPNFVDVADFLGVNR 476
++++DE+H++ + RG+ IE ++++ L +S+ +RI+G+SAT+P + +L
Sbjct: 1 MIVVDEMHMVFDSSRGAHIEHMLSKVLLWNQSALEKVRIIGMSATIPELYRIGKWLD--- 57
Query: 477 NVGMFYFDQSFRPKALEQHLI---GCRGKAGSKQCRENTDKVAYEKAVEMMKLGNQVMIF 533
G F+ FRP L+ H++ R +K RE ++ E + +Q ++
Sbjct: 58 --GAKVFEARFRPIVLQNHIVIGSELRKSGDNKVLREFSEDPLILLTEESFRRNSQTLVM 115
Query: 534 VHSRKDTVKTARTLISMARDNYEMDL----FTSNDASVTIFQK---ELSKHKDKDLKELF 586
+ S+ D KTA + S + + D A+ +F K E + KD+++
Sbjct: 116 ISSKLDAEKTALNIASRFHEINKTDSSLLEILKERANGLLFIKHGLERNGCKDRNVMSTL 175
Query: 587 QSGFGVHHAGMSRSDRNITEKMFKSGAVNVLVCTATLAWGVNLPADCVIIKGTQVYDSKK 646
G HHAG++ +R E F+ + +LV T+TLA GVNLPA+ V+IK ++
Sbjct: 176 AWGVAYHHAGLTMEERECIELGFREKNIVILVATSTLASGVNLPAERVLIK------AQP 229
Query: 647 GGYTDLGISDVIQIFGRAGRPGFGSDYGTAYLCTSNDR 684
G + L + Q+ GRAGR G + +++ S+++
Sbjct: 230 RGPSALTSLNYRQMVGRAGRTGHATRGTSSFPAKSSNK 267
Score = 87.4 bits (215), Expect = 2e-16
Identities = 79/283 (27%), Positives = 131/283 (45%), Gaps = 35/283 (12%)
Query: 1257 LIIMDEIHLLA-SDRGPILEMIVSRMNYVSSQTKKPIRLLGMSTAVSNAFDMASWLGVKG 1315
+I++DE+H++ S RG +E ++S++ + + +R++GMS + + + WL
Sbjct: 1 MIVVDEMHMVFDSSRGAHIEHMLSKVLLWNQSALEKVRIIGMSATIPELYRIGKWL---- 56
Query: 1316 NGLYNFPSSVRPVPLKMYI------DGFPDNLNFCPLMKTMNKPAFMAIKQHSPEK--PV 1367
+G F + RP+ L+ +I DN +++ ++ + + + S +
Sbjct: 57 DGAKVFEARFRPIVLQNHIVIGSELRKSGDN----KVLREFSEDPLILLTEESFRRNSQT 112
Query: 1368 LLFVASRRQTRLTALDL---IHLCGMEDNPRRFLHIDDEEELQYYISK-------VSDDT 1417
L+ ++S+ TAL++ H D+ L I E K D
Sbjct: 113 LVMISSKLDAEKTALNIASRFHEINKTDSS--LLEILKERANGLLFIKHGLERNGCKDRN 170
Query: 1418 LKLSLQFGIGLHHAGLIESDRAISHELFLRSKIQILVATSTLAWGVNLPAHLVIIKGTQF 1477
+ +L +G+ HHAGL +R F I ILVATSTLA GVNLPA V+IK
Sbjct: 171 VMSTLAWGVAYHHAGLTMEERECIELGFREKNIVILVATSTLASGVNLPAERVLIK---- 226
Query: 1478 FDAKIEGYRDMDLTDILQMMGRAGRPAYDTSGTAIVYTKESKK 1520
A+ G + + QM+GRAGR + T GT+ K S K
Sbjct: 227 --AQPRGPSALTSLNYRQMVGRAGRTGHATRGTSSFPAKSSNK 267
>ECU04g1290 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-box
superfamily
Length = 881
Score = 102 bits (253), Expect = 8e-21
Identities = 101/413 (24%), Positives = 184/413 (44%), Gaps = 71/413 (17%)
Query: 1139 QTMVFHTLYHSNVSTFVGSPTGSGKTVVAELAIWHAFRDYPGSKVVYIAPMKALVRERVN 1198
Q F+ L ++ S FV + T SGKT+VAE AI + G++ +Y +P+KAL ++ +
Sbjct: 69 QRQAFYLLSRAS-SVFVSAHTSSGKTLVAEYAI--SLSQIHGTRTIYTSPIKALSNQKYH 125
Query: 1199 DWRKRITPVTGDRIVELTGDSVPDPQDIKDATIVITTPEKFDGISRN--WQTRKFVQNVS 1256
D++++ D + +TGD +P A ++ T E I RN ++ +++
Sbjct: 126 DFKQKY-----DDVGIITGDVQVNPA----AKCLVMTTE----ILRNLVYRNGDLLRDTE 172
Query: 1257 LIIMDEIHLL-ASDRGPILEMIVSRMNYVSSQTKKPIRLLGMSTAVSNAFDMASWLG-VK 1314
++ DE+H + S+RG + E + + + I + +S + N+ + + W+G K
Sbjct: 173 FVVFDEVHYINDSERGVVWEECIIMI-------PRHINFIMLSATIPNSLEFSEWVGRTK 225
Query: 1315 GNGLYNFPSSVRPVPLKMYI----------DG---------FPDNLNFCPLMKTMNKPAF 1355
+Y +S R VPL+ I DG D + F + K
Sbjct: 226 DKTIYVISTSKRAVPLEHVIYCDWCVYSIDDGGGKRNASNFKGDLVPFSKKTRPTGKFKI 285
Query: 1356 MAIKQHSPEK---PVLLFVASRRQTRLTALDLIHLCGMEDNPRRFLHIDDEEELQYYISK 1412
+ + +K P + F S+R+ A +++ + D R EE++ ++S+
Sbjct: 286 LDVANFVVKKKLTPAIFFCFSKRKCEDYA-EILRTLNLNDTKSR-------EEVKLFLSE 337
Query: 1413 VS------DDTLKLSLQF------GIGLHHAGLIESDRAISHELFLRSKIQILVATSTLA 1460
+ D L L G+ +HH L+ + LF + +++L+AT T A
Sbjct: 338 ATRCLSPEDRNLPQVLSMSSMVLNGVAVHHGSLLPFVKECVELLFSMNLVKLLIATETFA 397
Query: 1461 WGVNLPAHLVIIKGTQFFDAKIEGYRDMDLTDILQMMGRAGRPAYDTSGTAIV 1513
GVN+PA + D + +R + + +QM GRAGR D GT ++
Sbjct: 398 MGVNMPAKCCVFLSLSKIDGGV--FRYISSGEYIQMSGRAGRRGMDAVGTVMI 448
Score = 87.0 bits (214), Expect = 3e-16
Identities = 89/353 (25%), Positives = 160/353 (45%), Gaps = 49/353 (13%)
Query: 343 KIIYVAPLKALAAEITDKFARKLSVFDVKVRELTGDMQLTKREILETQVIVTTPEKWDVV 402
+ IY +P+KAL+ + F +K DV + +TGD+Q+ + +V T E ++
Sbjct: 109 RTIYTSPIKALSNQKYHDFKQKYD--DVGI--ITGDVQVNPA----AKCLVMTTE---IL 157
Query: 403 TRKASGDNDLTSKVKLLILDEVHLLHE-DRGSVIESLVARTLRQVESSQTMIRILGLSAT 461
+ DL + ++ DEVH +++ +RG V E + R I + LSAT
Sbjct: 158 RNLVYRNGDLLRDTEFVVFDEVHYINDSERGVVWEECIIMIPRH-------INFIMLSAT 210
Query: 462 LPNFVDVADFLGVNRNVGMFYFDQSFRPKALEQHLIGCR------GKAGSKQCRENT--D 513
+PN ++ ++++G ++ ++ S R LE H+I C G K+ N D
Sbjct: 211 IPNSLEFSEWVGRTKDKTIYVISTSKRAVPLE-HVIYCDWCVYSIDDGGGKRNASNFKGD 269
Query: 514 KVAYEKAV------EMMKLGNQVM--------IFVHSRK---DTVKTARTL-ISMARDNY 555
V + K +++ + N V+ F S++ D + RTL ++ +
Sbjct: 270 LVPFSKKTRPTGKFKILDVANFVVKKKLTPAIFFCFSKRKCEDYAEILRTLNLNDTKSRE 329
Query: 556 EMDLFTSNDASVTIFQKELSKHKDKDLKELFQSGFGVHHAGMSRSDRNITEKMFKSGAVN 615
E+ LF S +A+ + ++ + + + + +G VHH + + E +F V
Sbjct: 330 EVKLFLS-EATRCLSPEDRNLPQVLSMSSMVLNGVAVHHGSLLPFVKECVELLFSMNLVK 388
Query: 616 VLVCTATLAWGVNLPADCVIIKGTQVYDSKKGGYTDLGISDVIQIFGRAGRPG 668
+L+ T T A GVN+PA C + D G + + + IQ+ GRAGR G
Sbjct: 389 LLIATETFAMGVNMPAKCCVFLSLSKIDG--GVFRYISSGEYIQMSGRAGRRG 439
>Hs14721269 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box superfamily
Length = 1042
Score = 101 bits (252), Expect = 1e-20
Identities = 109/417 (26%), Positives = 175/417 (41%), Gaps = 76/417 (18%)
Query: 1149 SNVSTFVGSPTGSGKTVVAELAIWHAFRDYPGSKVVYIAPMKALVRERVNDWRKRITPVT 1208
+N S V + T +GKTV AE AI A R+ +V++ +P+KAL ++ + + V
Sbjct: 153 NNQSVLVSAHTSAGKTVCAEYAIALALREK--QRVIFTSPIKALSNQKYREMYEEFQDVG 210
Query: 1209 GDRIVELTGDSVPDPQDIKDATIVITTPEKFDGISRNWQTRKFVQNVSLIIMDEIHLLA- 1267
+TGD +P A+ ++ T E S ++ + ++ V+ +I DEIH +
Sbjct: 211 -----LMTGDVTINPT----ASCLVMTTEILR--SMLYRGSEVMREVAWVIFDEIHYMRD 259
Query: 1268 SDRGPILEMIVSRMNYVSSQTKKPIRLLGMSTAVSNAFDMASWL-GVKGNGLYNFPSSVR 1326
S+RG + E + + + + +S + NA A W+ + + + R
Sbjct: 260 SERGVVWEETIILL-------PDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIYTDYR 312
Query: 1327 PVPLKMYIDGFP---DNL-------------NFCPLMKTMNKPAFMAIKQHSPEK----- 1365
P PL+ YI FP D L NF M+ + +A K
Sbjct: 313 PTPLQHYI--FPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGTKG 370
Query: 1366 -----------------PVLLFVASRRQTRLTALDLIHLCGMEDNPRRFLHIDDEEELQY 1408
PV++F S++ AL + L D ++ + EE
Sbjct: 371 PSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMV----EEVFSN 426
Query: 1409 YISKVSDDTLKLS--------LQFGIGLHHAGLIESDRAISHELFLRSKIQILVATSTLA 1460
I +SD+ KL L+ GIG+HH GL+ + LF I+ L AT T A
Sbjct: 427 AIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFA 486
Query: 1461 WGVNLPAHLVIIKGTQFFDAKIEGYRDMDLTDILQMMGRAGRPAYDTSGTAIVYTKE 1517
G+N+PA V+ + FD K +R + + +QM GRAGR D G I+ E
Sbjct: 487 MGINMPARTVLFTNARKFDGK--DFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDE 541
Score = 73.6 bits (179), Expect = 3e-12
Identities = 92/419 (21%), Positives = 168/419 (39%), Gaps = 88/419 (21%)
Query: 296 NTNGNMLICAPTGAGKTDIALLTILNTIKQFSVINEEGGFDIEYDDFKIIYVAPLKALAA 355
+ N ++L+ A T AGKT A I +++ ++I+ +P+KAL+
Sbjct: 152 DNNQSVLVSAHTSAGKTVCAEYAIALALREKQ---------------RVIFTSPIKALSN 196
Query: 356 EITDKFARKLSVFDVKVRELTGDMQLTKREILETQVIVTTPEKWDVVTRKASGDNDLTSK 415
+ K+ F V +TGD+ + + +++TT +++ +++ +
Sbjct: 197 Q---KYREMYEEFQ-DVGLMTGDVTINPTA---SCLVMTT----EILRSMLYRGSEVMRE 245
Query: 416 VKLLILDEVHLLHE-DRGSVIESLVARTLRQVESSQTMIRILGLSATLPNFVDVADFLGV 474
V +I DE+H + + +RG V E + V + LSAT+PN A+++
Sbjct: 246 VAWVIFDEIHYMRDSERGVVWEETIILLPDNVH-------YVFLSATIPNARQFAEWICH 298
Query: 475 NRNVGMFYFDQSFRPKALEQHLIGCRGKAGSKQCRENTD--KVAYEKAVEMMK------L 526
+RP L+ ++ G EN D + + A+++++
Sbjct: 299 LHKQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAK 358
Query: 527 GNQ---------------------------VMIFVHSRKDTVKTARTLISMARDNYEMDL 559
G+Q V+IF S+KD A + ++D
Sbjct: 359 GDQKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMT-------KLDF 411
Query: 560 FTSNDASVT--IFQKELSKHKDKDLK--------ELFQSGFGVHHAGMSRSDRNITEKMF 609
T + + +F + D+D K L + G G+HH G+ + E +F
Sbjct: 412 NTDEEKKMVEEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILF 471
Query: 610 KSGAVNVLVCTATLAWGVNLPADCVIIKGTQVYDSKKGGYTDLGISDVIQIFGRAGRPG 668
G + L T T A G+N+PA V+ + +D K + G + IQ+ GRAGR G
Sbjct: 472 SEGLIKALFATETFAMGINMPARTVLFTNARKFDGKDFRWISSG--EYIQMSGRAGRRG 528
>ECU04g0910 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box superfamily
Length = 933
Score = 101 bits (252), Expect = 1e-20
Identities = 106/407 (26%), Positives = 178/407 (43%), Gaps = 70/407 (17%)
Query: 1152 STFVGSPTGSGKTVVAELAIWHAFRDYPGSKVVYIAPMKALVRERVNDWRKRITPVTGDR 1211
S V + T SGKTVVAE AI + R +VVY +P+KAL ++ + + V
Sbjct: 87 SVLVSAHTSSGKTVVAEYAIAMSLRS--NQRVVYTSPIKALSNQKYRELLSEFSDVG--- 141
Query: 1212 IVELTGDSVPDPQDIKDATIVITTPEKFDGISRNWQTR--KFVQNVSLIIMDEIHLLAS- 1268
+TGD +P A+ ++ T E I RN R + V+ + II DEIH +
Sbjct: 142 --LMTGDVTINPT----ASCLVMTTE----ILRNMLYRGGEVVREIHWIIFDEIHYMRDK 191
Query: 1269 DRGPILEMIVSRMNYVSSQTKKPIRLLGMSTAVSNAFDMASWLG-VKGNGLYNFPSSVRP 1327
+RG + E + + K +R++ +S + NA + A W+ ++ ++ + R
Sbjct: 192 ERGVVWEETIILL-------PKHVRMVFLSATIPNALEFAEWISHIQSQVVHVVYTEKRV 244
Query: 1328 VPLKMYI---------DGFPDNLNFCPLMKTMNK----PAFMAIKQHSPEKPVLLFVASR 1374
PL Y D NF M+++ K P + PV++F R
Sbjct: 245 TPLVHYFRSNKLYKIKDAKFHKSNFLSAMRSIRKRNVGPREVGEAIGDASLPVVVFSFKR 304
Query: 1375 RQTRLTALDLIHLCGMEDNPRRFLHIDDEEELQYYISK-------------VSDDTLKLS 1421
+ A+ L R+L ++ +Q + + + L L
Sbjct: 305 KDCERFAMKL---------DGRYLTDEEARTVQTIFTNAIMSLRKEDREIPIIQNILPLL 355
Query: 1422 LQFGIGLHHAGLIESDRAISHELFLRSKIQILVATSTLAWGVNLPAHLVIIKGTQFFDAK 1481
++ GIG+HH+GL+ + + LF +++L AT T + G+N+PA V+ + FD
Sbjct: 356 MR-GIGIHHSGLLPIIKEVVEILFQEGLLKVLFATETFSIGLNMPAKSVVFTALKKFDG- 413
Query: 1482 IEGYRDMDLTDILQMMGRAGRPAYDTSGTAI------VYTKESKKMF 1522
E R + + +QM GRAGR D+ G I + KE+ ++F
Sbjct: 414 -EAMRLVSSGEYIQMSGRAGRRGIDSMGIVISIISEPITYKEASRLF 459
Score = 82.0 bits (201), Expect = 9e-15
Identities = 95/415 (22%), Positives = 182/415 (42%), Gaps = 64/415 (15%)
Query: 277 VFEYDYLNKVQSLVYPVAYNTNGNMLICAPTGAGKTDIALLTILNTIKQFSVINEEGGFD 336
+FE D K+ + + ++L+ A T +GKT +A I +++
Sbjct: 68 LFELDDFQKISVC----SLERDESVLVSAHTSSGKTVVAEYAIAMSLRS----------- 112
Query: 337 IEYDDFKIIYVAPLKALAAEITDKFARKLSVFDVKVRELTGDMQLTKREILETQVIVTTP 396
+ +++Y +P+KAL+ + K+ LS F V +TGD+ + + +++TT
Sbjct: 113 ----NQRVVYTSPIKALSNQ---KYRELLSEFS-DVGLMTGDVTINPTA---SCLVMTT- 160
Query: 397 EKWDVVTRKASGDNDLTSKVKLLILDEVHLLHE-DRGSVIESLVARTLRQVESSQTMIRI 455
+++ ++ ++ +I DE+H + + +RG V E + + V R+
Sbjct: 161 ---EILRNMLYRGGEVVREIHWIIFDEIHYMRDKERGVVWEETIILLPKHV-------RM 210
Query: 456 LGLSATLPNFVDVADFLG---------------VNRNVGMFYFDQSFRPKALEQHLIGCR 500
+ LSAT+PN ++ A+++ V V F ++ ++ K + H
Sbjct: 211 VFLSATIPNALEFAEWISHIQSQVVHVVYTEKRVTPLVHYFRSNKLYKIKDAKFHKSNFL 270
Query: 501 GKAGSKQCRENTDKVAYEKAVEMMKLGNQVMIFVHSRKDTVKTARTLISMARDNYE---- 556
S + R N +A+ L V++F RKD + A L + E
Sbjct: 271 SAMRSIRKR-NVGPREVGEAIGDASL--PVVVFSFKRKDCERFAMKLDGRYLTDEEARTV 327
Query: 557 MDLFTSNDASVTIFQKELSKHKDKDLKELFQSGFGVHHAGMSRSDRNITEKMFKSGAVNV 616
+FT+ S+ +E+ ++ + L G G+HH+G+ + + E +F+ G + V
Sbjct: 328 QTIFTNAIMSLRKEDREIPIIQN--ILPLLMRGIGIHHSGLLPIIKEVVEILFQEGLLKV 385
Query: 617 LVCTATLAWGVNLPADCVIIKGTQVYDSKKGGYTDLGISDVIQIFGRAGRPGFGS 671
L T T + G+N+PA V+ + +D + G + IQ+ GRAGR G S
Sbjct: 386 LFATETFSIGLNMPAKSVVFTALKKFDGEAMRLVSSG--EYIQMSGRAGRRGIDS 438
>At4g32700 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfamily
Length = 1548
Score = 100 bits (250), Expect = 2e-20
Identities = 97/342 (28%), Positives = 156/342 (45%), Gaps = 67/342 (19%)
Query: 388 ETQVIVTTPEKWDVVTRKASGDNDLTSKVKLLILDEVHLLHEDRGSVIESLVARTLRQV- 446
+T V V T EK + + + + L S++ ++++DE+H++ + + L+ LR
Sbjct: 55 DTSVAVCTIEKANSLINRLLEEGRL-SELGIIVIDELHMVGDQHRGYLLELMLTKLRYAA 113
Query: 447 ----------ESSQTM---------IRILGLSATLPNFVDVADFLGV---NRNVGMF--Y 482
ESS T ++I+G+SAT+PN VAD+L V N N+ ++
Sbjct: 114 GEGSSESSSGESSGTSSGKADPAHGLQIVGMSATMPNVGAVADWLQVSKTNHNLCVYAAL 173
Query: 483 FDQSFRPKALEQHLIGCRGKAGSKQCRENTDKVA----------------YEKAVEMMKL 526
+ FRP LE+++ K GS + + V E E+++
Sbjct: 174 YQTEFRPVPLEEYI-----KVGSTIYNKKMEVVRTIPKAADMGGKDPDHIVELCNEVVQE 228
Query: 527 GNQVMIFVHSRKDTVKTARTLISMAR--------DNYE-MDLFTSNDASVTIFQKELSKH 577
GN V+IF SRK TAR + + + +N E MD+ ++ DA +
Sbjct: 229 GNSVLIFCSSRKGCESTARHISKLIKNVPVNVDGENSEFMDIRSAIDAL-----RRSPSG 283
Query: 578 KDKDLKELFQSGFGVHHAGMSRSDRNITEKMFKSGAVNVLVCTATLAWGVNLPADCVIIK 637
D L+E SG HHAG++ +R I E ++ G V VL T+TLA GVNLPA VI +
Sbjct: 284 VDPVLEETLPSGVAYHHAGLTVEEREIVETCYRKGLVRVLTATSTLAAGVNLPARRVIFR 343
Query: 638 GTQVYDSKKGGYTDLGISDVIQIFGRAGRPGFGSDYGTAYLC 679
+ G + + Q+ GRAGR G + + +C
Sbjct: 344 QPMI------GRDFIDGTRYKQMSGRAGRTGIDTKGDSVLIC 379
Score = 100 bits (249), Expect = 2e-20
Identities = 102/397 (25%), Positives = 169/397 (41%), Gaps = 69/397 (17%)
Query: 1227 KDATIVITTPEKFDGISRNWQTRKFVQNVSLIIMDEIHLLASD-RGPILEMIVSRMNYVS 1285
KD ++ + T EK + + + + +I++DE+H++ RG +LE++++++ Y +
Sbjct: 54 KDTSVAVCTIEKANSLINRLLEEGRLSELGIIVIDELHMVGDQHRGYLLELMLTKLRYAA 113
Query: 1286 SQTKKP-------------------IRLLGMSTAVSNAFDMASWLGVKGNGLYN------ 1320
+ ++++GMS + N +A WL V +N
Sbjct: 114 GEGSSESSSGESSGTSSGKADPAHGLQIVGMSATMPNVGAVADWLQVSKTN-HNLCVYAA 172
Query: 1321 -FPSSVRPVPLKMYID-GFPDNLNFCPLMKTMNKPAFMAIKQ--HSPE---------KPV 1367
+ + RPVPL+ YI G +++T+ K A M K H E V
Sbjct: 173 LYQTEFRPVPLEEYIKVGSTIYNKKMEVVRTIPKAADMGGKDPDHIVELCNEVVQEGNSV 232
Query: 1368 LLFVASRRQTRLTALDLIHLC-----GMEDNPRRFLHIDDEEELQYYISKVSDDTLKLSL 1422
L+F +SR+ TA + L ++ F+ I + D L+ +L
Sbjct: 233 LIFCSSRKGCESTARHISKLIKNVPVNVDGENSEFMDIRSAIDALRRSPSGVDPVLEETL 292
Query: 1423 QFGIGLHHAGLIESDRAISHELFLRSKIQILVATSTLAWGVNLPAHLVIIKGTQFFDAKI 1482
G+ HHAGL +R I + + +++L ATSTLA GVNLPA VI F +
Sbjct: 293 PSGVAYHHAGLTVEEREIVETCYRKGLVRVLTATSTLAAGVNLPARRVI------FRQPM 346
Query: 1483 EGYRDMDLTDILQMMGRAGRPAYDTSGTAIVYTKESKKMFYKHFLNVGF-PVESSL---- 1537
G +D T QM GRAGR DT G +++ K + LN P++S L
Sbjct: 347 IGRDFIDGTRYKQMSGRAGRTGIDTKGDSVLICKPGELKRIMALLNETCPPLQSCLSEDK 406
Query: 1538 ----HKVLDDHMGAEIASGTISTKQE----ALDFLNW 1566
H +L+ +A G + T ++ FL W
Sbjct: 407 NGMTHAILE-----VVAGGIVQTAKDIHRYVRKFLEW 438
>Hs19525733 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfamily
Length = 1101
Score = 100 bits (248), Expect = 3e-20
Identities = 97/391 (24%), Positives = 171/391 (42%), Gaps = 50/391 (12%)
Query: 1158 PTGSGKTVVAELAIWHAFRDYPGSKVVYIAPMKALVRERVNDWRKRITPVTGDRIVELTG 1217
PT GKT+VAE+ + V+ I P A+V+E+++ G + E G
Sbjct: 360 PTSGGKTLVAEILMLQELL-CCRKDVLMILPYVAIVQEKISG-LSSFGIELGFFVEEYAG 417
Query: 1218 DS--VPDPQDIKDATIVITTPEKFDGISRNWQTRKFVQNVSLIIMDEIHLLA-SDRGPIL 1274
P + + ++ I T EK + + + ++ L+++DE+H++ RG L
Sbjct: 418 SKGRFPPTKRREKKSLYIATIEKGHSLVNSLIETGRIDSLGLVVVDELHMIGEGSRGATL 477
Query: 1275 EMIVSRMNYVSSQTKKPIRLLGMSTAVSNAFDMASWLGVKGNGLYNFPSSVRPVPLKMY- 1333
EM ++++ Y T K +++GMS ++N D+ +L + + S RPV LK Y
Sbjct: 478 EMTLAKILY----TSKTTQIIGMSATLNNVEDLQKFLQAE-----YYTSQFRPVELKEYL 528
Query: 1334 --------IDGFPD---------NLNFCPLMKTMNKPAFMA-IKQHSPEKPVLLFVASRR 1375
+D + N + +K M+ +A + + P L+F S++
Sbjct: 529 KINDTIYEVDSKAENGMTFSRLLNYKYSDTLKKMDPDHLVALVTEVIPNYSCLVFCPSKK 588
Query: 1376 QTRLTALDLIHLCGMEDNPRRFLHIDDEEELQYY--ISKVSD----DTLKLSLQFGIGLH 1429
A + E +L ++E+ + + + + LK ++ FG+ H
Sbjct: 589 NCENVAEMICKFLSKE-----YLKHKEKEKCEVIKNLKNIGNGNLCPVLKRTIPFGVAYH 643
Query: 1430 HAGLIESDRAISHELFLRSKIQILVATSTLAWGVNLPAHLVIIKGTQFFDAKIEGYRDMD 1489
H+GL +R + E + + + TSTLA GVNLPA VI++ A +
Sbjct: 644 HSGLTSDERKLLEEAYSTGVLCLFTCTSTLAAGVNLPARRVILR------APYVAKEFLK 697
Query: 1490 LTDILQMMGRAGRPAYDTSGTAIVYTKESKK 1520
QM+GRAGR DT G +I+ +E K
Sbjct: 698 RNQYKQMIGRAGRAGIDTIGESILILQEKDK 728
Score = 91.3 bits (225), Expect = 1e-17
Identities = 154/662 (23%), Positives = 264/662 (39%), Gaps = 129/662 (19%)
Query: 129 ENTGTADQDLFDYLGAENIELISFLIENQEILKHTPIEHMSNSDTYEGNRFMTEEDM-RR 187
EN + DL D+ E S E L H IE +D ++ T DM RR
Sbjct: 204 ENLQNSSNDLGDHSMKERDWKSSSHNTVNEELPHNCIEQPQQNDE-SSSKVRTSSDMNRR 262
Query: 188 QVLKNREKGKNAKLATAQRKVKYPHVFRQSEDAGSSMLSFAGQKFALPAGSMRYTFQTHE 247
+ +K+ K A AQ + F +S+ ++LS + T ++
Sbjct: 263 KSIKDHLKNAMTGNAKAQTPI-----FSRSKQLKDTLLSEE-------INVAKKTIESSS 310
Query: 248 EITIPCAVPKRKFDIPLVKVSDLDEYCR---KVFEYDY----LNKVQSLVYPVAYNTNGN 300
P + +P KV DL + K++E+ + LN VQ N
Sbjct: 311 NDLGPF------YSLPS-KVRDLYAQFKGIEKLYEWQHTCLTLNSVQE---------RKN 354
Query: 301 MLICAPTGAGKTDIALLTILNTIKQFSVINEEGGFDIEYDDFKII-YVAPLKALAAEITD 359
++ PT GKT +A + +L + D I+ YVA ++ + ++
Sbjct: 355 LIYSLPTSGGKTLVAEILMLQEL-----------LCCRKDVLMILPYVAIVQEKISGLSS 403
Query: 360 KFARKLSVFDVKVRELTGDMQLTKREILETQVIVTTPEKWDVVTRKASGDNDLTSKVKLL 419
F +L F + G TKR ++ I T + +V + + L+
Sbjct: 404 -FGIELGFFVEEYAGSKGRFPPTKRREKKSLYIATIEKGHSLVNSLI--ETGRIDSLGLV 460
Query: 420 ILDEVHLLHE-DRGSVIESLVARTLRQVESSQTMIRILGLSATLPNFVDVADFLGVNRNV 478
++DE+H++ E RG+ +E +A+ L +++Q I+G+SATL N D+ FL
Sbjct: 461 VVDELHMIGEGSRGATLEMTLAKILYTSKTTQ----IIGMSATLNNVEDLQKFLQAE--- 513
Query: 479 GMFYFDQSFRPKALEQHLIGCRGKAGSKQCRENTDKVAYEKAVEMMKLGNQVMIFVHSRK 538
Y+ FRP L+++L + N + E ++++ + +S
Sbjct: 514 ---YYTSQFRPVELKEYL------------KINDTIYEVDSKAENGMTFSRLLNYKYS-- 556
Query: 539 DTVKTAR-----TLISMARDNYEMDLFTSNDASVT--------IFQKELSKHKDKD---- 581
DT+K L++ NY +F + + KE KHK+K+
Sbjct: 557 DTLKKMDPDHLVALVTEVIPNYSCLVFCPSKKNCENVAEMICKFLSKEYLKHKEKEKCEV 616
Query: 582 ---------------LKELFQSGFGVHHAGMSRSDRNITEKMFKSGAVNVLVCTATLAWG 626
LK G HH+G++ +R + E+ + +G + + CT+TLA G
Sbjct: 617 IKNLKNIGNGNLCPVLKRTIPFGVAYHHSGLTSDERKLLEEAYSTGVLCLFTCTSTLAAG 676
Query: 627 VNLPADCVIIKGTQVYDS--KKGGYTDLGISDVIQIFGRAGRPGFGSDYGTAYLCTSNDR 684
VNLPA VI++ V K+ Y Q+ GRAGR G + G + L
Sbjct: 677 VNLPARRVILRAPYVAKEFLKRNQYK--------QMIGRAGRAGIDT-IGESILILQEKD 727
Query: 685 LDHYVDLITQQHPIE---SRLGAKVVDNLN----AEISLGTVTNVEEGVKWLGYTYMFVR 737
++LIT+ P+E S L + + + I L TN+++ ++ T+ V+
Sbjct: 728 KQQVLELITK--PLENCYSHLVQEFTKGIQTLFLSLIGLKIATNLDDIYHFMNGTFFGVQ 785
Query: 738 MK 739
K
Sbjct: 786 QK 787
>SPAC17H9.02 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box superfamily
Length = 1030
Score = 99.8 bits (247), Expect = 4e-20
Identities = 107/438 (24%), Positives = 190/438 (42%), Gaps = 82/438 (18%)
Query: 1130 YPFKYFNPMQTMVFHTLYHSNVSTFVGSPTGSGKTVVAELAIWHAFRDYPGSKVVYIAPM 1189
YPF+ +P Q+ + S V + T +GKTV+AE AI A ++ +V+Y +P+
Sbjct: 122 YPFE-LDPFQSTAIKCVERME-SVLVSAHTSAGKTVIAEYAIAQALKNR--QRVIYTSPI 177
Query: 1190 KALVRERVNDWRKRITPVTGDRIVELTGDSVPDPQDIKDATIVITTPEKFDGISRNWQTR 1249
K+L ++ + GD + +TGD +P A+ +I T E + ++
Sbjct: 178 KSLSNQKYRELLSEF----GD-VGLMTGDVSINPS----ASCLIMTTEILRAML--YKNS 226
Query: 1250 KFVQNVSLIIMDEIHLLAS-DRGPILEMIVSRMNYVSSQTKKPIRLLGMSTAVSNAFDMA 1308
+ + ++ +I DE+H + DRG + E + + IR + +S + NA A
Sbjct: 227 EIMHEIAWVIFDEVHYMRDKDRGVVWEETLILL-------PDAIRFIFLSATLPNALQFA 279
Query: 1309 SWLG-VKGNGLYNFPSSVRPVPLKMYI-----DGFPDNLNFCPLMKTMNKPAFMAIKQHS 1362
W+ + + + RP PL+ +I DG ++ KT N + + HS
Sbjct: 280 RWISEIHKQPCHVVYTDYRPTPLQHFIYPQGADGIYMLVDEKNKFKTENFKKVLEVLDHS 339
Query: 1363 PEK-----------------------------PVLLFVASRRQTRLTALDLIHLCGMEDN 1393
+ P+++F S+++ + A H G D
Sbjct: 340 TRQENYSKSSKKVKKSSSLERIINMVLSNRYDPIIVFCFSKKECEINA----HQFGKLD- 394
Query: 1394 PRRFLHIDDEEEL-----QYYISKVSDDT--------LKLSLQFGIGLHHAGLIESDRAI 1440
L+ + +EL I+++S++ ++ L GIG+HH+GL+ + +
Sbjct: 395 ----LNDTENKELVTEIFDSAINQLSEEDRGLRQFEEMRSLLLRGIGIHHSGLLPILKEL 450
Query: 1441 SHELFLRSKIQILVATSTLAWGVNLPAHLVIIKGTQFFDAKIEGYRDMDLTDILQMMGRA 1500
LF ++IL AT T + G+N+PA V+ Q F +R + + +QM GRA
Sbjct: 451 VEILFQEGLVRILFATETFSIGLNMPARTVLFTKAQKFSG--NNFRWLTSGEYMQMSGRA 508
Query: 1501 GRPAYDTSGTAIVYTKES 1518
GR DT G +IV +S
Sbjct: 509 GRRGIDTKGLSIVILDQS 526
Score = 88.2 bits (217), Expect = 1e-16
Identities = 102/407 (25%), Positives = 179/407 (43%), Gaps = 74/407 (18%)
Query: 300 NMLICAPTGAGKTDIALLTILNTIKQFSVINEEGGFDIEYDDFKIIYVAPLKALAAEITD 359
++L+ A T AGKT IA I +K ++IY +P+K+L+ +
Sbjct: 142 SVLVSAHTSAGKTVIAEYAIAQALKNRQ---------------RVIYTSPIKSLSNQ--- 183
Query: 360 KFARKLSVFDVKVRELTGDMQLTKREILETQVIVTTPEKWDVVTRKASGDNDLTSKVKLL 419
K+ LS F V +TGD+ + + +I+TT +++ ++++ ++ +
Sbjct: 184 KYRELLSEFG-DVGLMTGDVSINPSA---SCLIMTT----EILRAMLYKNSEIMHEIAWV 235
Query: 420 ILDEVHLLHE-DRGSVIESLVARTLRQVESSQTMIRILGLSATLPNFVDVADFLGVNRNV 478
I DEVH + + DRG V E TL + + IR + LSATLPN + A ++
Sbjct: 236 IFDEVHYMRDKDRGVVWEE----TLILLPDA---IRFIFLSATLPNALQFARWISEIHKQ 288
Query: 479 GMFYFDQSFRPKALEQHLIGCRGKAG--------SKQCRENTDKVA-----------YEK 519
+RP L QH I +G G +K EN KV Y K
Sbjct: 289 PCHVVYTDYRPTPL-QHFIYPQGADGIYMLVDEKNKFKTENFKKVLEVLDHSTRQENYSK 347
Query: 520 AVEMMK------------LGNQ---VMIFVHSRKDTVKTARTLISM-ARDNYEMDLFTS- 562
+ + +K L N+ +++F S+K+ A + D +L T
Sbjct: 348 SSKKVKKSSSLERIINMVLSNRYDPIIVFCFSKKECEINAHQFGKLDLNDTENKELVTEI 407
Query: 563 -NDASVTIFQKELSKHKDKDLKELFQSGFGVHHAGMSRSDRNITEKMFKSGAVNVLVCTA 621
+ A + +++ + ++++ L G G+HH+G+ + + E +F+ G V +L T
Sbjct: 408 FDSAINQLSEEDRGLRQFEEMRSLLLRGIGIHHSGLLPILKELVEILFQEGLVRILFATE 467
Query: 622 TLAWGVNLPADCVIIKGTQVYDSKKGGYTDLGISDVIQIFGRAGRPG 668
T + G+N+PA V+ Q + + G + +Q+ GRAGR G
Sbjct: 468 TFSIGLNMPARTVLFTKAQKFSGNNFRWLTSG--EYMQMSGRAGRRG 512
>7295156 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfamily
Length = 1051
Score = 99.0 bits (245), Expect = 7e-20
Identities = 106/401 (26%), Positives = 178/401 (43%), Gaps = 53/401 (13%)
Query: 1158 PTGSGKTVVAELAIWHAFRDYPGSKVVYIAPMKALVRERVNDWRKRITP--VTGDRIVEL 1215
PT GKT+VAE+ + + V++I P ++V+E+V+ ++P + D IVE
Sbjct: 288 PTSGGKTLVAEILMLRELLCRERN-VLFILPYVSIVQEKVS----AMSPFAIDLDFIVEE 342
Query: 1216 ----TGDSVPDPQDIKDATIVITTPEKFDGISRNWQTRKFVQNVSLIIMDEIHLLASD-R 1270
G P P+ K ++ I + EK + + + + L+++DE+HL+ R
Sbjct: 343 YTAGKGKCPPQPRR-KRRSLFIASIEKGAVLMDSLIDVQRPHEIGLVVVDELHLIGEKGR 401
Query: 1271 GPILEMIVSRMNYVSSQTKKPIRLLGMSTAVSNAFDMASWLGVKGNGLYNFPSSVRPVPL 1330
G LE ++++ ++++ I+++GMS + N +++S+L + RPV L
Sbjct: 402 GATLEAFLTKVMFLNAN----IQIVGMSATIGNLSEISSFLNADV-----YTRGFRPVEL 452
Query: 1331 KMYIDGFPDNLNFCPLMKTMNK--------------------PAFMA--IKQHSPEKPVL 1368
K YI PD L +T+ + P +A I + +PE L
Sbjct: 453 KEYIKCGPDLLEINSAGQTLEEIFVPSRSVEYNYSEAVKRADPDHLAGLISECAPEHCCL 512
Query: 1369 LFVASRRQTRLTALDLIHLCGMED--NPRRFLHIDDEEELQYYISKVSDDTLKLSLQFGI 1426
+F SR+ AL L + RR +D + L +S L +L +GI
Sbjct: 513 VFCPSRKNCENVALLLSRIVPKHKFFEHRRSEKLDLMDALDKMCGILSP-VLAKTLPYGI 571
Query: 1427 GLHHAGLIESDRAISHELFLRSKIQILVATSTLAWGVNLPAHLVIIKGTQFFDAKIEGYR 1486
HH+GL +R + + ++ TSTLA GVNLPA VII+ A G
Sbjct: 572 AYHHSGLTTDERKYIETAYRFGVVTVICCTSTLAAGVNLPAKRVIIR------APYVGQE 625
Query: 1487 DMDLTDILQMMGRAGRPAYDTSGTAIVYTKESKKMFYKHFL 1527
+ L QM+GRAGR +G +I+ + + L
Sbjct: 626 FLTLCKYKQMVGRAGRAGLGEAGESILIAQSKDNLLVGQML 666
Score = 85.9 bits (211), Expect = 6e-16
Identities = 97/422 (22%), Positives = 171/422 (39%), Gaps = 79/422 (18%)
Query: 300 NMLICAPTGAGKTDIALLTILNTIKQFSVINEEGGFDIEYDDFKIIYVAPLKALAAEITD 359
N++ PT GKT +A + +L ++ + ++++ P ++ E
Sbjct: 282 NLIYALPTSGGKTLVAEILMLR--------------ELLCRERNVLFILPYVSIVQEKVS 327
Query: 360 KFARKLSVFDVKVRELT-GDMQLTKREILETQVIVTTPEKWDVVTRKASGDNDLTSKVKL 418
+ D V E T G + + + + + + V + D ++ L
Sbjct: 328 AMSPFAIDLDFIVEEYTAGKGKCPPQPRRKRRSLFIASIEKGAVLMDSLIDVQRPHEIGL 387
Query: 419 LILDEVHLLHED-RGSVIESLVARTLRQVESSQTMIRILGLSATLPNFVDVADFLGVNRN 477
+++DE+HL+ E RG+ +E+ L +V I+I+G+SAT+ N +++ FL +
Sbjct: 388 VVVDELHLIGEKGRGATLEAF----LTKVMFLNANIQIVGMSATIGNLSEISSFLNAD-- 441
Query: 478 VGMFYFDQSFRPKALEQHLIGCRGKAGSKQCRENTD--------------KVAYEKAVEM 523
+ + FRP L++++ K G N+ + Y +AV+
Sbjct: 442 ----VYTRGFRPVELKEYI-----KCGPDLLEINSAGQTLEEIFVPSRSVEYNYSEAVKR 492
Query: 524 MKLGNQV------------MIFVHSRKDTVKTARTLISMA--------RDNYEMDLFTSN 563
+ ++F SRK+ A L + R + ++DL +
Sbjct: 493 ADPDHLAGLISECAPEHCCLVFCPSRKNCENVALLLSRIVPKHKFFEHRRSEKLDLMDAL 552
Query: 564 DASVTIFQKELSKHKDKDLKELFQSGFGVHHAGMSRSDRNITEKMFKSGAVNVLVCTATL 623
D I L+K G HH+G++ +R E ++ G V V+ CT+TL
Sbjct: 553 DKMCGILSPVLAK--------TLPYGIAYHHSGLTTDERKYIETAYRFGVVTVICCTSTL 604
Query: 624 AWGVNLPADCVIIKGTQVYDSKKGGYTDLGISDVIQIFGRAGRPGFGSDYGTAYLCTSND 683
A GVNLPA VII+ V G L + Q+ GRAGR G G + + S D
Sbjct: 605 AAGVNLPAKRVIIRAPYV------GQEFLTLCKYKQMVGRAGRAGLGEAGESILIAQSKD 658
Query: 684 RL 685
L
Sbjct: 659 NL 660
>Hs20631987 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-box
superfamily
Length = 1246
Score = 95.5 bits (236), Expect = 7e-19
Identities = 123/486 (25%), Positives = 204/486 (41%), Gaps = 109/486 (22%)
Query: 257 KRKFDIPLVKVSDLDEYCRKV--------FEYDYLNKVQSLVYPVAYNTNGNMLICAPTG 308
+ ++ IP+ S + ++ R + FE D K Q++++ + ++ + A T
Sbjct: 280 QEQWAIPVDATSPVGDFYRLIPQPAFQWAFEPDVFQK-QAILH---LERHDSVFVAAHTS 335
Query: 309 AGKTDIALLTILNTIKQFSVINEEGGFDIEYDDFKIIYVAPLKALAAEITDKFARKLSVF 368
AGKT +A I K + + IY +P+KAL+ + KF + F
Sbjct: 336 AGKTVVAEYAIALAQKHMT---------------RTIYTSPIKALSNQ---KFRDFRNTF 377
Query: 369 DVKVRELTGDMQLTKREILETQVIVTTPEKWDVVTRKASGDNDLTSKVKLLILDEVHLLH 428
V LTGD+QL E ++ T E ++ +D+ ++ +I DEVH ++
Sbjct: 378 G-DVGLLTGDVQLHP----EASCLIMTTE---ILRSMLYSGSDVIRDLEWVIFDEVHYIN 429
Query: 429 E-DRGSVIESLVARTLRQVESSQTMIRILGLSATLPNFVDVADFLGVNRNVGMFYFDQSF 487
+ +RG V E ++ V I+ LSAT+PN ++ AD++G + ++
Sbjct: 430 DVERGVVWEEVLIMLPDHVS-------IILLSATVPNALEFADWIGRLKRRQIYVISTVT 482
Query: 488 RPKALEQHL---------------IGCRGKA-----------------------GSKQCR 509
RP LE +L + RG G+KQ
Sbjct: 483 RPVPLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGYYAAVEAKKERMSKHAQTFGAKQPT 542
Query: 510 EN----TDKVAYEKAVEMMKLGNQ--VMIFVHSRKDTVKTARTLISMARDNYEMDLFTSN 563
D+ Y + ++ Q V++F SR + A L S+ DL TS+
Sbjct: 543 HQGGPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSL-------DLTTSS 595
Query: 564 DAS-VTIF-QKELSKHKDKD--------LKELFQSGFGVHHAGMSRSDRNITEKMFKSGA 613
+ S + +F Q+ L++ + D + EL G GVHH+G+ + I E +F G
Sbjct: 596 EKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNRGLGVHHSGILPILKEIVEMLFSRGL 655
Query: 614 VNVLVCTATLAWGVNLPADCVIIKGTQVYDSKKGGYTDLGISDVIQIFGRAGRPGFGSDY 673
V VL T T A GVN+PA V+ + +D + DL + +Q+ GRAGR G
Sbjct: 656 VKVLFATETFAMGVNMPARTVVFDSMRKHDGST--FRDLLPGEYVQMAGRAGRRGLDPTG 713
Query: 674 GTAYLC 679
LC
Sbjct: 714 TVILLC 719
Score = 68.2 bits (165), Expect = 1e-10
Identities = 57/195 (29%), Positives = 97/195 (49%), Gaps = 24/195 (12%)
Query: 1142 VFHTLYHSNVSTFVGSPTGSGKTVVAELAIWHAFRDYPGSKVVYIAPMKALVRERVNDWR 1201
+ H H +V FV + T +GKTVVAE AI A ++ +Y +P+KAL ++ D+R
Sbjct: 319 ILHLERHDSV--FVAAHTSAGKTVVAEYAI--ALAQKHMTRTIYTSPIKALSNQKFRDFR 374
Query: 1202 KRITPVTGDRIVELTGDSVPDPQDIKDATIVITTPEKFDGISRNWQTRKFVQNVSLIIMD 1261
GD + LTGD P +A+ +I T E S + ++++ +I D
Sbjct: 375 NTF----GD-VGLLTGDVQLHP----EASCLIMTTEILR--SMLYSGSDVIRDLEWVIFD 423
Query: 1262 EIHLLAS-DRGPILEMIVSRMNYVSSQTKKPIRLLGMSTAVSNAFDMASWLG-VKGNGLY 1319
E+H + +RG + E ++ + + ++ +S V NA + A W+G +K +Y
Sbjct: 424 EVHYINDVERGVVWEEVLIML-------PDHVSIILLSATVPNALEFADWIGRLKRRQIY 476
Query: 1320 NFPSSVRPVPLKMYI 1334
+ RPVPL+ Y+
Sbjct: 477 VISTVTRPVPLEHYL 491
Score = 67.4 bits (163), Expect = 2e-10
Identities = 36/95 (37%), Positives = 54/95 (55%), Gaps = 2/95 (2%)
Query: 1422 LQFGIGLHHAGLIESDRAISHELFLRSKIQILVATSTLAWGVNLPAHLVIIKGTQFFDAK 1481
L G+G+HH+G++ + I LF R +++L AT T A GVN+PA V+ + D
Sbjct: 628 LNRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGS 687
Query: 1482 IEGYRDMDLTDILQMMGRAGRPAYDTSGTAIVYTK 1516
+RD+ + +QM GRAGR D +GT I+ K
Sbjct: 688 T--FRDLLPGEYVQMAGRAGRRGLDPTGTVILLCK 720
>SPCC550.03c [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-box
superfamily
Length = 1213
Score = 93.2 bits (230), Expect = 4e-18
Identities = 107/431 (24%), Positives = 175/431 (39%), Gaps = 97/431 (22%)
Query: 300 NMLICAPTGAGKTDIALLTILNTIKQFSVINEEGGFDIEYDDFKIIYVAPLKALAAEITD 359
++ + A T AGKT +A I K + K IY +P+KAL+ +
Sbjct: 297 SVFVAAHTSAGKTVVAEYAIALAQKHMT---------------KAIYTSPIKALSNQKFR 341
Query: 360 KFARKLSVFDVKVRELTGDMQLTKREILETQVIVTTPEKWDVVTRKASGDNDLTSKVKLL 419
F K DV + LTGD+Q+ + +++TT ++ R A DL V+ +
Sbjct: 342 DFKHKFE--DVGI--LTGDVQVNPEG---SCLLMTTEILRSMLYRGA----DLIRDVEFV 390
Query: 420 ILDEVHLLHE-DRGSVIESLVARTLRQVESSQTMIRILGLSATLPNFVDVADFLGVNRNV 478
I DEVH +++ +RG V E ++ V ++ LSAT+PN + A ++G +
Sbjct: 391 IFDEVHYVNDLERGVVWEEVIIMLPPHVT-------LILLSATVPNTKEFASWVGRTKKK 443
Query: 479 GMFYFDQSFRP--------------KALEQH---------------------------LI 497
++ RP K ++QH
Sbjct: 444 NIYVISTLKRPVPLEHYLWVKQNMFKIVDQHGRFLMDGYKSANDALKKPDKPVIAKDNKN 503
Query: 498 GCRGKAGSKQCRENTDKV---AYEKAVEMMKLGNQVMIFVHSRKDTVKTARTLI-SMARD 553
RG+ ++ T+ + K+VE V + H K + + S R
Sbjct: 504 SARGRGAARGRGVQTNMMRGRGSAKSVERRDANTWVHLIGHLHKQNLLPVIVFVFSKKRC 563
Query: 554 NYEMDLFTSNDASV--------TIFQKELSKHKDKD--------LKELFQSGFGVHHAGM 597
+D T+ D + + +K +++ K +D ++E+ G VHH G+
Sbjct: 564 EEYVDTLTNRDLNNHQEKSEVHVVIEKAVARLKKEDRLLPQIGRMREMLSRGLAVHHGGL 623
Query: 598 SRSDRNITEKMFKSGAVNVLVCTATLAWGVNLPADCVIIKGTQVYDSKKGGYTDLGISDV 657
+ I E +F+ G V VL T T A GVN+PA V+ GTQ +D + + DL +
Sbjct: 624 LPIIKEIVEILFQRGLVKVLFATETFAMGVNMPAKSVVFSGTQKHDGR--NFRDLLPGEY 681
Query: 658 IQIFGRAGRPG 668
Q GRAGR G
Sbjct: 682 TQCSGRAGRRG 692
Score = 72.8 bits (177), Expect = 5e-12
Identities = 57/207 (27%), Positives = 102/207 (48%), Gaps = 24/207 (11%)
Query: 1130 YPFKYFNPMQTMVFHTLYHSNVSTFVGSPTGSGKTVVAELAIWHAFRDYPGSKVVYIAPM 1189
+PF+ N + ++H S FV + T +GKTVVAE AI A +K +Y +P+
Sbjct: 277 FPFELDNFQKEAIYHL--EMGDSVFVAAHTSAGKTVVAEYAI--ALAQKHMTKAIYTSPI 332
Query: 1190 KALVRERVNDWRKRITPVTGDRIVELTGDSVPDPQDIKDATIVITTPEKFDGISRNWQTR 1249
KAL ++ D++ + + + LTGD +P + + ++ T E S ++
Sbjct: 333 KALSNQKFRDFKHKF-----EDVGILTGDVQVNP----EGSCLLMTTEILR--SMLYRGA 381
Query: 1250 KFVQNVSLIIMDEIHLLAS-DRGPILEMIVSRMNYVSSQTKKPIRLLGMSTAVSNAFDMA 1308
+++V +I DE+H + +RG + E ++ + + L+ +S V N + A
Sbjct: 382 DLIRDVEFVIFDEVHYVNDLERGVVWEEVIIML-------PPHVTLILLSATVPNTKEFA 434
Query: 1309 SWLG-VKGNGLYNFPSSVRPVPLKMYI 1334
SW+G K +Y + RPVPL+ Y+
Sbjct: 435 SWVGRTKKKNIYVISTLKRPVPLEHYL 461
Score = 70.1 bits (170), Expect = 3e-11
Identities = 37/95 (38%), Positives = 54/95 (55%), Gaps = 2/95 (2%)
Query: 1422 LQFGIGLHHAGLIESDRAISHELFLRSKIQILVATSTLAWGVNLPAHLVIIKGTQFFDAK 1481
L G+ +HH GL+ + I LF R +++L AT T A GVN+PA V+ GTQ D +
Sbjct: 612 LSRGLAVHHGGLLPIIKEIVEILFQRGLVKVLFATETFAMGVNMPAKSVVFSGTQKHDGR 671
Query: 1482 IEGYRDMDLTDILQMMGRAGRPAYDTSGTAIVYTK 1516
+RD+ + Q GRAGR D +GT I+ ++
Sbjct: 672 --NFRDLLPGEYTQCSGRAGRRGLDVTGTVIILSR 704
>7298249 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box superfamily
Length = 1055
Score = 89.7 bits (221), Expect = 4e-17
Identities = 111/444 (25%), Positives = 182/444 (40%), Gaps = 90/444 (20%)
Query: 1130 YPFKYFNPMQTMVFHTLYHSNVSTFVGSPTGSGKTVVAELAIWHAFRDYPGSKVVYIAPM 1189
YPF +P Q + +S S V + T +GKTVVAE AI + +V+Y P+
Sbjct: 148 YPF-VLDPFQRQAILCIDNSQ-SVLVSAHTSAGKTVVAEYAIAKSLA--AKQRVIYTTPI 203
Query: 1190 KALVRERVNDWRKRITPVTGDRIVELTGDSVPDPQDIKDATIVITTPEKFDGISRNWQTR 1249
KAL ++ ++ V +TGD +P A+ +I T E I RN R
Sbjct: 204 KALSNQKFREFTDEFKDVG-----LVTGDVTINPS----ASCLIMTTE----ILRNMLYR 250
Query: 1250 --KFVQNVSLIIMDEIHLLAS-DRGPILEMIVSRMNYVSSQTKKPIRLLGMSTAVSNAFD 1306
+ ++ V ++ DEIH + +RG + E + + +R + +S + NA
Sbjct: 251 GSEIMREVGWVVFDEIHYMRDKERGVVWEETLILL-------PDNVRYVFLSATIPNARQ 303
Query: 1307 MASWLGVKGNGLYNFPSSV-----RPVPLKMYI-----DGFPDNLNFCPLMKTMNKPAFM 1356
A W+ L+ P V RP PL+ YI DG ++ K N M
Sbjct: 304 FAEWVC----HLHKQPCHVVYTDYRPTPLQHYIFPAGGDGIHLIVDEKGQFKEDNFTTAM 359
Query: 1357 AIKQHSPEK-----------------------------------PVLLFVASRRQTRLTA 1381
A+ ++ E PV++F S++ + A
Sbjct: 360 AVLANAGEAGKGDQKGRHGGIKGTNAGQTNIFKIVKMIMERNFAPVIIFSFSKKDCEIYA 419
Query: 1382 LDLIHLCGMEDNPRRFLHIDDEEELQYYISKVSDDTLKLS--------LQFGIGLHHAGL 1433
+ + L + ++ + +E + ++++ +L L+ GIG+HH GL
Sbjct: 420 MQMAKLDFNTPDEKKLV----DEVFNNAMDVLTEEDRRLPQVENVLPLLRRGIGIHHGGL 475
Query: 1434 IESDRAISHELFLRSKIQILVATSTLAWGVNLPAHLVIIKGTQFFDAKIEGYRDMDLTDI 1493
+ + LF I+ L AT T A G+N+PA V+ + FD K +R + +
Sbjct: 476 LPILKETIEILFGEGLIKALFATETFAMGLNMPARTVLFTAPRKFDGK--KFRWISSGEY 533
Query: 1494 LQMMGRAGRPAYDTSGTAIVYTKE 1517
+QM GRAGR D G I+ E
Sbjct: 534 IQMAGRAGRRGLDDKGIVILMIDE 557
Score = 75.9 bits (185), Expect = 6e-13
Identities = 95/416 (22%), Positives = 171/416 (40%), Gaps = 86/416 (20%)
Query: 300 NMLICAPTGAGKTDIALLTILNTIKQFSVINEEGGFDIEYDDFKIIYVAPLKALA----A 355
++L+ A T AGKT +A I ++ ++IY P+KAL+
Sbjct: 168 SVLVSAHTSAGKTVVAEYAIAKSLAAKQ---------------RVIYTTPIKALSNQKFR 212
Query: 356 EITDKFARKLSVFDVKVRELTGDMQLTKREILETQVIVTTPEKWDVVTRKASGDNDLTSK 415
E TD+F V +TGD+ + + +I+TT +++ +++ +
Sbjct: 213 EFTDEFK--------DVGLVTGDVTINPSA---SCLIMTT----EILRNMLYRGSEIMRE 257
Query: 416 VKLLILDEVHLLHE-DRGSVIESLVARTLRQVESSQTMIRILGLSATLPNFVDVADFLGV 474
V ++ DE+H + + +RG V E TL + + +R + LSAT+PN A+++
Sbjct: 258 VGWVVFDEIHYMRDKERGVVWEE----TLILLPDN---VRYVFLSATIPNARQFAEWVCH 310
Query: 475 NRNVGMFYFDQSFRPKALEQHLIGCRGKA------------------------------- 503
+RP L+ ++ G
Sbjct: 311 LHKQPCHVVYTDYRPTPLQHYIFPAGGDGIHLIVDEKGQFKEDNFTTAMAVLANAGEAGK 370
Query: 504 GSKQCRE------NTDKVAYEKAVEMMKLGN--QVMIFVHSRKDTVKTARTLISM---AR 552
G ++ R N + K V+M+ N V+IF S+KD A + +
Sbjct: 371 GDQKGRHGGIKGTNAGQTNIFKIVKMIMERNFAPVIIFSFSKKDCEIYAMQMAKLDFNTP 430
Query: 553 DNYEMDLFTSNDASVTIFQKELSKHKDKDLKELFQSGFGVHHAGMSRSDRNITEKMFKSG 612
D ++ N+A + +++ + +++ L + G G+HH G+ + E +F G
Sbjct: 431 DEKKLVDEVFNNAMDVLTEEDRRLPQVENVLPLLRRGIGIHHGGLLPILKETIEILFGEG 490
Query: 613 AVNVLVCTATLAWGVNLPADCVIIKGTQVYDSKKGGYTDLGISDVIQIFGRAGRPG 668
+ L T T A G+N+PA V+ + +D KK + G + IQ+ GRAGR G
Sbjct: 491 LIKALFATETFAMGLNMPARTVLFTAPRKFDGKKFRWISSG--EYIQMAGRAGRRG 544
>YJL050w [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box superfamily
Length = 1073
Score = 87.8 bits (216), Expect = 2e-16
Identities = 107/454 (23%), Positives = 192/454 (41%), Gaps = 104/454 (22%)
Query: 1130 YPFKYFNPMQTMVFHTLYHSNVSTFVGSPTGSGKTVVAELAIWHAFRDYPGSKVVYIAPM 1189
YPF +P Q + S V + T +GKTVVAE AI + ++ +V+Y +P+
Sbjct: 146 YPFT-LDPFQDTAISCIDRGE-SVLVSAHTSAGKTVVAEYAIAQSLKNK--QRVIYTSPI 201
Query: 1190 KALVRERVNDWRKRITPVTGDRIVELTGDSVPDPQDIKDATIVITTPEKFDGISRNWQTR 1249
KAL ++ + + GD + +TGD +P DA ++ T E S ++
Sbjct: 202 KALSNQKYRE----LLAEFGD-VGLMTGDITINP----DAGCLVMTTEILR--SMLYRGS 250
Query: 1250 KFVQNVSLIIMDEIHLLAS-DRGPILEMIVSRMNYVSSQTKKPIRLLGMSTAVSNAFDMA 1308
+ ++ V+ +I DE+H + +RG + E + + +R + +S + NA + A
Sbjct: 251 EVMREVAWVIFDEVHYMRDKERGVVWEETIILL-------PDKVRYVFLSATIPNAMEFA 303
Query: 1309 SWL-GVKGNGLYNFPSSVRPVPLKMYIDGFP---DNL-------------NFCPLMKTMN 1351
W+ + + ++ RP PL+ Y+ FP D + NF M +++
Sbjct: 304 EWICKIHSQPCHIVYTNFRPTPLQHYL--FPAHGDGIYLVVDEKSTFREENFQKAMASIS 361
Query: 1352 KPA------------------------------FMAIKQHSPEK--PVLLFVASRRQTRL 1379
+ +K +K PV++F S+R
Sbjct: 362 NQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEE 421
Query: 1380 TALDLIHLCGMEDNPRRFLHIDDEEELQYYISKVSDDTLKLS----------------LQ 1423
AL + L + DDE+E ++K+ ++ + L L+
Sbjct: 422 LALKMSKLD---------FNSDDEKEA---LTKIFNNAIALLPETDRELPQIKHILPLLR 469
Query: 1424 FGIGLHHAGLIESDRAISHELFLRSKIQILVATSTLAWGVNLPAHLVIIKGTQFFDAKIE 1483
GIG+HH+GL+ + + LF +++L AT T + G+N+PA V+ + +D +
Sbjct: 470 RGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDG--Q 527
Query: 1484 GYRDMDLTDILQMMGRAGRPAYDTSGTAIVYTKE 1517
+R + + +QM GRAGR D G I+ E
Sbjct: 528 QFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDE 561
Score = 85.5 bits (210), Expect = 8e-16
Identities = 99/418 (23%), Positives = 180/418 (42%), Gaps = 84/418 (20%)
Query: 300 NMLICAPTGAGKTDIALLTILNTIKQFSVINEEGGFDIEYDDFKIIYVAPLKALAAEITD 359
++L+ A T AGKT +A I ++K N++ ++IY +P+KAL+ +
Sbjct: 166 SVLVSAHTSAGKTVVAEYAIAQSLK-----NKQ----------RVIYTSPIKALSNQ--- 207
Query: 360 KFARKLSVFDVKVRELTGDMQLTKREILETQVIVTTPEKWDVVTRKASGDNDLTSKVKLL 419
K+ L+ F V +TGD+ + + +V T E ++ +++ +V +
Sbjct: 208 KYRELLAEFG-DVGLMTGDITINP----DAGCLVMTTE---ILRSMLYRGSEVMREVAWV 259
Query: 420 ILDEVHLLHE-DRGSVIESLVARTLRQVESSQTMIRILGLSATLPNFVDVADFLGVNRNV 478
I DEVH + + +RG V E + +V R + LSAT+PN ++ A+++ +
Sbjct: 260 IFDEVHYMRDKERGVVWEETIILLPDKV-------RYVFLSATIPNAMEFAEWICKIHSQ 312
Query: 479 GMFYFDQSFRPKALEQHLIGC--------------------------------------- 499
+FRP L+ +L
Sbjct: 313 PCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTD 372
Query: 500 -RGKAGSKQ---CRENTDKVAYEKAVEMM--KLGNQVMIFVHSRKDTVKTARTLISM--- 550
RGK G + K K V+M+ K N V++F S++D + A + +
Sbjct: 373 SRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFN 432
Query: 551 ARDNYEMDLFTSNDASVTIFQKELSKHKDKDLKELFQSGFGVHHAGMSRSDRNITEKMFK 610
+ D E N+A + + + + K + L + G G+HH+G+ + + E +F+
Sbjct: 433 SDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQ 492
Query: 611 SGAVNVLVCTATLAWGVNLPADCVIIKGTQVYDSKKGGYTDLGISDVIQIFGRAGRPG 668
G + VL T T + G+N+PA V+ + +D ++ + G + IQ+ GRAGR G
Sbjct: 493 EGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGG--EYIQMSGRAGRRG 548
>CE06562 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box superfamily
Length = 1026
Score = 85.9 bits (211), Expect = 6e-16
Identities = 113/470 (24%), Positives = 191/470 (40%), Gaps = 84/470 (17%)
Query: 1097 HLIRPHNETLQTRLQKLNPLPTSALKNPLVES--IYPFKYFNPMQTMVFHT----LYHSN 1150
H IR NE + +P +A L E+ P KY+ P Q F +N
Sbjct: 86 HTIRTDNENCTHEVA----IPPNAEFAELRENSGTEPAKYY-PFQLDAFQKQAILCIDNN 140
Query: 1151 VSTFVGSPTGSGKTVVAELAIWHAFRDYPGSKVVYIAPMKALVRERVNDWRKRITPVTGD 1210
S V + T +GKTVVA AI R+ +V+Y +P+KAL ++ + + V
Sbjct: 141 QSVLVSAHTSAGKTVVATYAIAKCLREK--QRVIYTSPIKALSNQKYRELEEEFKDVG-- 196
Query: 1211 RIVELTGDSVPDPQDIKDATIVITTPEKFDGISRNWQTRKFVQNVSLIIMDEIHLLAS-D 1269
+TGD +P DA+ ++ T E S ++ + ++ V ++ DEIH + +
Sbjct: 197 ---LMTGDVTLNP----DASCLVMTTEILR--SMLYRGSEIMKEVGWVVYDEIHYMRDKE 247
Query: 1270 RGPILEMIVSRMNYVSSQTKKPIRLLGMSTAVSNAFDMASWLG----------------- 1312
RG + E + M+ K I+ +S + NA A W+
Sbjct: 248 RGVVWEETIILMS-------KNIKQAFLSATIPNARQFAQWVASIKQQPVNVVYTDYRPT 300
Query: 1313 --------VKGNGLY---NFPSSVRPVPLKMYIDGFP---DNLNFCPLMKT-------MN 1351
V G G+Y N R + + G D+ +T N
Sbjct: 301 PLQHWIYPVGGEGMYEVVNVKGEFREDKFRDAMSGLATAGDSAGSFNKRRTGGGTQGDSN 360
Query: 1352 KPAFMAIKQHSPEKPVLLFVASRRQTRLTALDLIHLCGMEDNPRRFLHIDDEEELQYYIS 1411
+ + ++F SR++ A+ L + +D+ + + + + I+
Sbjct: 361 VLKIIRSVASNDGLNCIVFSFSRKECESYAISLKDMDFNKDHEKGMV----KSVYESAIA 416
Query: 1412 KVSDDTLKLS--------LQFGIGLHHAGLIESDRAISHELFLRSKIQILVATSTLAWGV 1463
++S + KL L+ GIG+HH+GL+ + LF +++L AT T + G+
Sbjct: 417 QLSPEDQKLPQILNILPLLRRGIGVHHSGLMPILKETIEILFGEGLVKVLFATETFSMGL 476
Query: 1464 NLPAHLVIIKGTQFFDAKIEGYRDMDLTDILQMMGRAGRPAYDTSGTAIV 1513
N+PA V+ + FD Y + + +QM GRAGR D GT I+
Sbjct: 477 NMPARTVVFTSARKFDGSDNRY--ITSGEYIQMAGRAGRRGKDDRGTVIL 524
Score = 79.7 bits (195), Expect = 4e-14
Identities = 104/426 (24%), Positives = 179/426 (41%), Gaps = 82/426 (19%)
Query: 296 NTNGNMLICAPTGAGKTDIALLTILNTIKQFSVINEEGGFDIEYDDFKIIYVAPLKALAA 355
+ N ++L+ A T AGKT +A I +++ ++IY +P+KAL+
Sbjct: 138 DNNQSVLVSAHTSAGKTVVATYAIAKCLREKQ---------------RVIYTSPIKALSN 182
Query: 356 EITDKFARKLSVFDVKVRELTGDMQLTKREILETQVIVTTPEKWDVVTRKASGDNDLTSK 415
+ K+ R+L V +TGD+ L + +V T E ++ +++ +
Sbjct: 183 Q---KY-RELEEEFKDVGLMTGDVTLNP----DASCLVMTTE---ILRSMLYRGSEIMKE 231
Query: 416 VKLLILDEVHLLHE-DRGSVIESLVARTLRQVESSQTMIRILGLSATLPNFVDVADFLGV 474
V ++ DE+H + + +RG V E + + ++ + LSAT+PN A ++
Sbjct: 232 VGWVVYDEIHYMRDKERGVVWEETIILMSKNIKQAF-------LSATIPNARQFAQWVAS 284
Query: 475 NRN--VGMFYFDQSFRPKALEQHLIGCRGKAGSKQCRENTDKVAYEKAVEMMK----LGN 528
+ V + Y D +RP L QH I G G + + +K + M G+
Sbjct: 285 IKQQPVNVVYTD--YRPTPL-QHWIYPVGGEGMYEVVNVKGEFREDKFRDAMSGLATAGD 341
Query: 529 QVMIFVHSR--------KDTVKTARTLISMARDNYEMDLFTSNDA-SVTIFQKELSKHKD 579
F R + +K R++ S N + F+ + S I K++ +KD
Sbjct: 342 SAGSFNKRRTGGGTQGDSNVLKIIRSVASNDGLNCIVFSFSRKECESYAISLKDMDFNKD 401
Query: 580 KD---LKELFQS------------------------GFGVHHAGMSRSDRNITEKMFKSG 612
+ +K +++S G GVHH+G+ + E +F G
Sbjct: 402 HEKGMVKSVYESAIAQLSPEDQKLPQILNILPLLRRGIGVHHSGLMPILKETIEILFGEG 461
Query: 613 AVNVLVCTATLAWGVNLPADCVIIKGTQVYDSKKGGYTDLGISDVIQIFGRAGRPGFGSD 672
V VL T T + G+N+PA V+ + +D Y G + IQ+ GRAGR G D
Sbjct: 462 LVKVLFATETFSMGLNMPARTVVFTSARKFDGSDNRYITSG--EYIQMAGRAGRRG-KDD 518
Query: 673 YGTAYL 678
GT L
Sbjct: 519 RGTVIL 524
>YLR398c [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-box
superfamily
Length = 1287
Score = 80.9 bits (198), Expect = 2e-14
Identities = 69/249 (27%), Positives = 117/249 (46%), Gaps = 39/249 (15%)
Query: 1088 ESAHTISFQHLIRPHNETLQTRLQKLNPLPTSALKNPLVESIYPFKYFNPMQTMVFHTLY 1147
E AH + H I +E + P P + +PF+ + V+H
Sbjct: 301 EWAHVVDLNHKIENFDELI--------PNPARS---------WPFELDTFQKEAVYHL-- 341
Query: 1148 HSNVSTFVGSPTGSGKTVVAELAIWHAFRDYPGSKVVYIAPMKALVRERVNDWRKRITPV 1207
S FV + T +GKTVVAE AI A R+ +K +Y +P+KAL ++ D+++ V
Sbjct: 342 EQGDSVFVAAHTSAGKTVVAEYAIAMAHRNM--TKTIYTSPIKALSNQKFRDFKETFDDV 399
Query: 1208 TGDRIVELTGDSVPDPQDIKDATIVITTPEKFDGISRNWQTRKFVQNVSLIIMDEIHLL- 1266
I +TGD +P DA +I T E S ++ +++V +I DE+H +
Sbjct: 400 ---NIGLITGDVQINP----DANCLIMTTEILR--SMLYRGADLIRDVEFVIFDEVHYVN 450
Query: 1267 ASDRGPILEMIVSRMNYVSSQTKKPIRLLGMSTAVSNAFDMASWLG-VKGNGLYNFPSSV 1325
DRG + E ++ + + ++ + +S V N ++ A+W+G K +Y +
Sbjct: 451 DQDRGVVWEEVIIML-------PQHVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPK 503
Query: 1326 RPVPLKMYI 1334
RPVPL++ I
Sbjct: 504 RPVPLEINI 512
Score = 67.4 bits (163), Expect = 2e-10
Identities = 48/157 (30%), Positives = 77/157 (48%), Gaps = 6/157 (3%)
Query: 1366 PVLLFVASRRQTRLTA--LDLIHLCGMEDNPRRFLHIDDEEELQYYISKVSDDTLKLS-- 1421
P+++FV S+++ A L+ I+ C ++ + + I+ + LK
Sbjct: 628 PMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSL 687
Query: 1422 LQFGIGLHHAGLIESDRAISHELFLRSKIQILVATSTLAWGVNLPAHLVIIKGTQFFDAK 1481
L+ GI +HH GL+ + + LF + I++L AT T A G+NLP VI + D
Sbjct: 688 LERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKHDG- 746
Query: 1482 IEGYRDMDLTDILQMMGRAGRPAYDTSGTAIVYTKES 1518
G R++ + QM GRAGR D++GT IV S
Sbjct: 747 -NGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNS 782
Score = 63.5 bits (153), Expect = 3e-09
Identities = 49/164 (29%), Positives = 76/164 (45%), Gaps = 16/164 (9%)
Query: 530 VMIFVHSRKDTVKTARTL--ISMARDNYEMDLFTSNDASVTIFQKELSKHKDKDL----- 582
+++FV S+K + A L I+ + + + + S+T +KE D+DL
Sbjct: 629 MVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKE-----DRDLPQILK 683
Query: 583 -KELFQSGFGVHHAGMSRSDRNITEKMFKSGAVNVLVCTATLAWGVNLPADCVIIKGTQV 641
+ L + G VHH G+ + + E +F G + VL T T A G+NLP VI +
Sbjct: 684 TRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRK 743
Query: 642 YDSKKGGYTDLGISDVIQIFGRAGRPGFGSDYGTAYLCTSNDRL 685
+D G +L + Q+ GRAGR G S GT + N L
Sbjct: 744 HDG--NGLRELTPGEFTQMAGRAGRRGLDST-GTVIVMAYNSPL 784
Score = 57.0 bits (136), Expect = 3e-07
Identities = 54/195 (27%), Positives = 91/195 (45%), Gaps = 32/195 (16%)
Query: 300 NMLICAPTGAGKTDIALLTILNTIKQFSVINEEGGFDIEYDDFKIIYVAPLKALAAEITD 359
++ + A T AGKT +A I + + K IY +P+KAL+ +
Sbjct: 346 SVFVAAHTSAGKTVVAEYAIAMAHRNMT---------------KTIYTSPIKALSNQKFR 390
Query: 360 KFARKLSVFDVKVRELTGDMQLTKREILETQVIVTTPEKWDVVTRKASGDNDLTSKVKLL 419
F K + DV + +TGD+Q+ +I+TT ++ R A DL V+ +
Sbjct: 391 DF--KETFDDVNIGLITGDVQINPDA---NCLIMTTEILRSMLYRGA----DLIRDVEFV 441
Query: 420 ILDEVHLLHE-DRGSVIESLVARTLRQVESSQTMIRILGLSATLPNFVDVADFLGVNRNV 478
I DEVH +++ DRG V E ++ + V + + LSAT+PN + A+++G +
Sbjct: 442 IFDEVHYVNDQDRGVVWEEVIIMLPQHV-------KFILLSATVPNTYEFANWIGRTKQK 494
Query: 479 GMFYFDQSFRPKALE 493
++ RP LE
Sbjct: 495 NIYVISTPKRPVPLE 509
>CE20651 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-box
superfamily
Length = 1260
Score = 72.8 bits (177), Expect = 5e-12
Identities = 56/183 (30%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 498 GCRGKAGSKQCRENTDKVAYEKAVEMMKLGNQV--MIFVHSRKDTVKTARTLISMAR--- 552
G G G + DK Y + MK +Q+ ++FV SRK + A+ L SM
Sbjct: 525 GGGGNGGGRNWPGKNDKNIYLNLINYMKCSDQLPMVVFVFSRKRCDENAQMLASMNLTTE 584
Query: 553 -DNYEMDLFTSNDASVTIFQKELSKHKDKDL------KELFQSGFGVHHAGMSRSDRNIT 605
+ + LF S + K DK+L ++L GF VHH+G+ + +
Sbjct: 585 VEKQHVRLFFSQCV-------QRLKGSDKELPQVLTMRDLCLRGFAVHHSGILPILKEVV 637
Query: 606 EKMFKSGAVNVLVCTATLAWGVNLPADCVIIKGTQVYDSKKGGYTDLGISDVIQIFGRAG 665
E +F+ G V +L T T A GVN+PA CV+ +D + + G + Q+ GRAG
Sbjct: 638 ELLFQKGYVKILFATETFAMGVNMPARCVVFDSIMKHDGTERRMLNPG--EYTQMAGRAG 695
Query: 666 RPG 668
R G
Sbjct: 696 RRG 698
Score = 65.9 bits (159), Expect = 6e-10
Identities = 61/244 (25%), Positives = 114/244 (46%), Gaps = 24/244 (9%)
Query: 1124 PLVESIYPFKYFNPMQTMVFHTLYHSNVSTFVGSPTGSGKTVVAELAIWHAFRDYPGSKV 1183
P + YPF Q+ V S FV + T +GKTVVAE AI A ++
Sbjct: 277 PTMARKYPFSLDPFQQSSVL--CMERGESLFVAAHTSAGKTVVAEYAI--ALCQAHKTRA 332
Query: 1184 VYIAPMKALVRERVNDWRKRITPVTGDRIVELTGDSVPDPQDIKDATIVITTPEKFDGIS 1243
VY +P+KAL ++ D+++ + GD + +TGD P +A +I T E +
Sbjct: 333 VYTSPIKALSNQKFRDFKQ----IFGD-VGLVTGDIQLHP----EAACLIMTTEILRSML 383
Query: 1244 RNWQTRKFVQNVSLIIMDEIHLLAS-DRGPILEMIVSRMNYVSSQTKKPIRLLGMSTAVS 1302
N + ++++ ++ DE+H + + +RG + E ++ + ++++ +S V
Sbjct: 384 YNGS--EVIRDLEWVVFDEVHYINNEERGHVWEEVLIML-------PAHVKIVMLSATVP 434
Query: 1303 NAFDMASWLG-VKGNGLYNFPSSVRPVPLKMYIDGFPDNLNFCPLMKTMNKPAFMAIKQH 1361
N + A W+G +K + + RPVPL+ ++ D L K +++ +K +
Sbjct: 435 NCVEFADWVGRIKNRKINVISTDRRPVPLEHFLYTGQDGKTQKDLFKIIDRSGQFILKGY 494
Query: 1362 SPEK 1365
+ K
Sbjct: 495 NDAK 498
Score = 60.8 bits (146), Expect = 2e-08
Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 10/163 (6%)
Query: 1362 SPEKPVLLFVASRRQTRLTALDLIHLCGMEDNPRRFLHIDDEEELQYYISKVSDDTLKLS 1421
S + P+++FV SR++ A L + + ++ + + + +Q K SD L
Sbjct: 554 SDQLPMVVFVFSRKRCDENAQMLASMNLTTEVEKQHVRLFFSQCVQRL--KGSDKELPQV 611
Query: 1422 LQF------GIGLHHAGLIESDRAISHELFLRSKIQILVATSTLAWGVNLPAHLVIIKGT 1475
L G +HH+G++ + + LF + ++IL AT T A GVN+PA V+
Sbjct: 612 LTMRDLCLRGFAVHHSGILPILKEVVELLFQKGYVKILFATETFAMGVNMPARCVVFDSI 671
Query: 1476 QFFDAKIEGYRDMDLTDILQMMGRAGRPAYDTSGTAIVYTKES 1518
D R ++ + QM GRAGR D +GT I+ K+S
Sbjct: 672 MKHDGTER--RMLNPGEYTQMAGRAGRRGLDLTGTVIIICKDS 712
>At1g70070 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-box
superfamily
Length = 1171
Score = 72.8 bits (177), Expect = 5e-12
Identities = 66/215 (30%), Positives = 100/215 (45%), Gaps = 31/215 (14%)
Query: 1128 SIYPFKYFNPMQTMVFHTLYHSNVSTFVGSPTGSGKTVVAELAIWHAFRDYPGSKVVYIA 1187
SIY F+ + Q + + S V +PT SGKT++AE A G ++ Y
Sbjct: 149 SIYDFR-IDKFQRLAIEAFLRGS-SVVVSAPTSSGKTLIAEAAAVSTVA--KGRRLFYTT 204
Query: 1188 PMKALVRERVNDWRKRITPVTGDRIVELTGDSVPDPQDIKDATIVITTPEKFDGISRNWQ 1247
P+KAL ++ ++R+ D + LTGDS + KDA IVI T E I RN
Sbjct: 205 PLKALSNQKFREFRETF---GDDNVGLLTGDSAIN----KDAQIVIMTTE----ILRNML 253
Query: 1248 TRKF--------VQNVSLIIMDEIHLLAS-DRGPILEMIVSRMNYVSSQTKKPIRLLGMS 1298
+ + +V I++DE+H L+ RG + E IV K ++L+ +S
Sbjct: 254 YQSVGMASSGTGLFHVDAIVLDEVHYLSDISRGTVWEEIV-------IYCPKEVQLICLS 306
Query: 1299 TAVSNAFDMASWLGVKGNGLYNFPSSVRPVPLKMY 1333
V+N ++A W+G S+ RPVPL Y
Sbjct: 307 ATVANPDELAGWIGEIHGKTELVTSTRRPVPLTWY 341
Score = 57.4 bits (137), Expect = 2e-07
Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 7/94 (7%)
Query: 1425 GIGLHHAGLIESDRAISHELFLRSKIQILVATSTLAWGVNLPAHLVIIKGTQFFDAKIEG 1484
GI HHAG + ++ ELF R ++++ AT TLA G+N+PA +I +K G
Sbjct: 497 GIAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVISSL----SKKAG 552
Query: 1485 YRDMDL--TDILQMMGRAGRPAYDTSG-TAIVYT 1515
++L ++ QM GRAGR D G T +V T
Sbjct: 553 NERIELGPNELYQMAGRAGRRGIDEKGYTVLVQT 586
Score = 55.1 bits (131), Expect = 1e-06
Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 6/106 (5%)
Query: 589 GFGVHHAGMSRSDRNITEKMFKSGAVNVLVCTATLAWGVNLPADCVIIKGTQVYDSKKGG 648
G HHAG ++ E++F+ G V V+ T TLA G+N+PA +I SKK G
Sbjct: 497 GIAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVISSL----SKKAG 552
Query: 649 --YTDLGISDVIQIFGRAGRPGFGSDYGTAYLCTSNDRLDHYVDLI 692
+LG +++ Q+ GRAGR G T + T+ + + L+
Sbjct: 553 NERIELGPNELYQMAGRAGRRGIDEKGYTVLVQTAFEGAEECCKLV 598
Score = 55.1 bits (131), Expect = 1e-06
Identities = 59/216 (27%), Positives = 103/216 (47%), Gaps = 41/216 (18%)
Query: 265 VKVSDLDEYCRKVFEYDY-LNKVQSLVYPVAYNTNGNMLICAPTGAGKTDIALLTILNTI 323
V++ D+DE + YD+ ++K Q L A+ ++++ APT +GKT IA ++T+
Sbjct: 139 VEMIDIDEL---ISIYDFRIDKFQRLAIE-AFLRGSSVVVSAPTSSGKTLIAEAAAVSTV 194
Query: 324 KQFSVINEEGGFDIEYDDFKIIYVAPLKALAAEITDKFARKLSVFDVKVRELTGDMQLTK 383
+ ++ Y PLKAL+ + +F D V LTGD + K
Sbjct: 195 AK---------------GRRLFYTTPLKALSNQKFREFRETFG--DDNVGLLTGDSAINK 237
Query: 384 REILETQVIVTTPE-----KWDVVTRKASGDNDLTSKVKLLILDEVHLLHE-DRGSVIES 437
+ Q+++ T E + V +SG V ++LDEVH L + RG+V E
Sbjct: 238 ----DAQIVIMTTEILRNMLYQSVGMASSGTG--LFHVDAIVLDEVHYLSDISRGTVWEE 291
Query: 438 LVARTLRQVESSQTMIRILGLSATLPNFVDVADFLG 473
+V ++V+ ++ LSAT+ N ++A ++G
Sbjct: 292 IVIYCPKEVQ-------LICLSATVANPDELAGWIG 320
>At3g46960 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-box
superfamily
Length = 1347
Score = 70.9 bits (172), Expect = 2e-11
Identities = 44/124 (35%), Positives = 63/124 (50%), Gaps = 14/124 (11%)
Query: 1418 LKLSLQFGIGLHHAGLIESDRAISHELFLRSKIQILVATSTLAWGVNLPAHLVIIKGTQF 1477
L+ L GIG+HHAGL+ + + LF R I++L +T T A GVN PA V+ +
Sbjct: 698 LQSLLHRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDALRK 757
Query: 1478 FDAKIEGYRDMDLTDILQMMGRAGRPAYDTSGTAIVYTKESKKMFYKHFLNVGFPVESSL 1537
FD K +R + + QM GRAGR D +GT +V ++ P ES L
Sbjct: 758 FDGK--EFRQLLPGEYTQMAGRAGRRGLDKTGTVVVMCRDE------------VPDESDL 803
Query: 1538 HKVL 1541
+V+
Sbjct: 804 RRVI 807
Score = 63.2 bits (152), Expect = 4e-09
Identities = 43/132 (32%), Positives = 63/132 (47%), Gaps = 12/132 (9%)
Query: 558 DLFTSNDAS-VTIF-QKELSKHKDKD--------LKELFQSGFGVHHAGMSRSDRNITEK 607
DL +S++ S + +F K S+ K D L+ L G GVHHAG+ + + E
Sbjct: 664 DLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQVLRLQSLLHRGIGVHHAGLLPIVKEVVEM 723
Query: 608 MFKSGAVNVLVCTATLAWGVNLPADCVIIKGTQVYDSKKGGYTDLGISDVIQIFGRAGRP 667
+F G + VL T T A GVN PA V+ + +D K+ + L + Q+ GRAGR
Sbjct: 724 LFCRGVIKVLFSTETFAMGVNAPARTVVFDALRKFDGKE--FRQLLPGEYTQMAGRAGRR 781
Query: 668 GFGSDYGTAYLC 679
G +C
Sbjct: 782 GLDKTGTVVVMC 793
Score = 57.0 bits (136), Expect = 3e-07
Identities = 50/182 (27%), Positives = 87/182 (47%), Gaps = 23/182 (12%)
Query: 1152 STFVGSPTGSGKTVVAELAIWHAFRDYPGSKVVYIAPMKALVRERVNDWRKRITPVTGDR 1211
S FV + T +GKTVVAE A A ++ VY AP+K + ++ D+ +
Sbjct: 368 SVFVAAHTSAGKTVVAEYAF--ALATKHCTRAVYTAPIKTISNQKYRDFCGKFD------ 419
Query: 1212 IVELTGDSVPDPQDIKDATIVITTPEKFDGISRNWQTRKFVQNVSLIIMDEIHLLAS-DR 1270
+ LTGD P +A+ +I T E S ++ ++++ +I DE+H + +R
Sbjct: 420 VGLLTGDVSIRP----EASCLIMTTEILR--SMLYRGADIIRDIEWVIFDEVHYVNDVER 473
Query: 1271 GPILEMIVSRMNYVSSQTKKPIRLLGMSTAVSNAFDMASWLG-VKGNGLYNFPSSVRPVP 1329
G + E ++ + + I + +S V N F+ A W+G K + ++ RPVP
Sbjct: 474 GVVWEEVIIML-------PRHINFVLLSATVPNTFEFADWIGRTKQKEIRVTGTTKRPVP 526
Query: 1330 LK 1331
L+
Sbjct: 527 LE 528
>ECU05g0940 [R] KOG0949 Predicted helicase DEAD-box superfamily
Length = 1337
Score = 59.7 bits (143), Expect = 5e-08
Identities = 37/110 (33%), Positives = 55/110 (49%), Gaps = 11/110 (10%)
Query: 1403 EEELQYYISKVSDDTLKLSLQFGIGLHHAGLIESDRAISHELFLRSKIQILVATSTLAWG 1462
EEE ++ K +D L G+G+HHA + R++ LF + +Q+L AT TLA G
Sbjct: 947 EEETKFI--KNTDFEFIDMLYRGMGVHHAHMNRKYRSLVEILFRQKHLQVLFATETLALG 1004
Query: 1463 VNLPAHLVIIKGTQFFDAKIEGYRDMDLTDILQMMGRAGRPAYDTSGTAI 1512
+N+P V+ G +D + QM GRAGR +DT G +
Sbjct: 1005 INMPCRTVVFAGDSL---------QLDPMNYKQMAGRAGRRGFDTLGNVV 1045
Score = 58.2 bits (139), Expect = 1e-07
Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 9/94 (9%)
Query: 576 KHKDKDLKELFQSGFGVHHAGMSRSDRNITEKMFKSGAVNVLVCTATLAWGVNLPADCVI 635
K+ D + ++ G GVHHA M+R R++ E +F+ + VL T TLA G+N+P V+
Sbjct: 954 KNTDFEFIDMLYRGMGVHHAHMNRKYRSLVEILFRQKHLQVLFATETLALGINMPCRTVV 1013
Query: 636 IKGTQVYDSKKGGYTDLGISDVIQIFGRAGRPGF 669
G + L + Q+ GRAGR GF
Sbjct: 1014 FAGDSL---------QLDPMNYKQMAGRAGRRGF 1038
>CE29195 [R] KOG0949 Predicted helicase DEAD-box superfamily
Length = 1714
Score = 59.7 bits (143), Expect = 5e-08
Identities = 61/255 (23%), Positives = 104/255 (39%), Gaps = 27/255 (10%)
Query: 1152 STFVGSPTGSGKTVVAELAIWHAFRDYPGSKVVYIAPMKALVRERVNDWRKRITPVTGDR 1211
S + +PT +GKT V+ I R VVY+AP KAL+ + R + R
Sbjct: 801 SALIIAPTSAGKTFVSYYCIEKVLRSSDNDVVVYVAPSKALINQVCGSVYARFRNKSMKR 860
Query: 1212 IVELTGDSVPD-PQDIKDATIVITTPEKFDG--ISRNWQTRKFVQNVSLIIMDEIHLL-A 1267
+ L G + Q+ ++IT PE +SR +KFV ++ ++ DE+H + A
Sbjct: 861 GISLFGTLTQEYSQNAMQCQVLITVPECLQELMLSRTPAVQKFVSHIKYVVFDEVHSIGA 920
Query: 1268 SDRGPILEMIVSRMNYVSSQTKKPIRLLGMSTAVSNAFDMASWL---------GVKGNGL 1318
S+ I E ++ + L +S + NA + WL G + L
Sbjct: 921 SEESHIWEQLLLLIQ---------CPFLALSATIGNANKLHEWLNSSEQAKSAGKRKVEL 971
Query: 1319 YNFPSSVRPVPLKMYIDGFPDNLNFCPLMKTMNKPAFMAIKQHS---PEKPVLLFVASRR 1375
N+ + L + P + + K + A + + + PEK + + +
Sbjct: 972 INYGERYSELELSILNINDPHGEDDGAVHKKAGERAVIPLMPYGVYMPEKLRMFSIPEDQ 1031
Query: 1376 QTRLTALDLIHLCGM 1390
Q LTA ++HL M
Sbjct: 1032 Q--LTARQVLHLYNM 1044
Score = 58.9 bits (141), Expect = 8e-08
Identities = 39/113 (34%), Positives = 55/113 (48%), Gaps = 13/113 (11%)
Query: 1411 SKVSDDTLKLSLQFGIGLHHAGLIESDRAISHELFLRSKIQILVATSTLAWGVNLPAHLV 1470
++ S L + GIG HHAGL +R LF + +L +TSTL+ GVN+P V
Sbjct: 1267 TRESTQVLLKLFERGIGYHHAGLNTVERGAVEVLFRSGNLAVLFSTSTLSLGVNMPCKTV 1326
Query: 1471 IIKGTQFFDAKIEGYRDMDLTDIL--QMMGRAGRPAYDTSGTAIVYTKESKKM 1521
+ G + LT +L QM GRAGR +D SG I + + K+
Sbjct: 1327 MF-----------GVDTLQLTPLLYRQMSGRAGRRGFDHSGNVIFMSIPTSKV 1368
Score = 58.5 bits (140), Expect = 1e-07
Identities = 34/90 (37%), Positives = 51/90 (55%), Gaps = 13/90 (14%)
Query: 582 LKELFQSGFGVHHAGMSRSDRNITEKMFKSGAVNVLVCTATLAWGVNLPADCVIIKGTQV 641
L +LF+ G G HHAG++ +R E +F+SG + VL T+TL+ GVN+P V+
Sbjct: 1274 LLKLFERGIGYHHAGLNTVERGAVEVLFRSGNLAVLFSTSTLSLGVNMPCKTVMF----- 1328
Query: 642 YDSKKGGYTDLGISDVI--QIFGRAGRPGF 669
G L ++ ++ Q+ GRAGR GF
Sbjct: 1329 ------GVDTLQLTPLLYRQMSGRAGRRGF 1352
>SPAC694.02 [R] KOG0949 Predicted helicase DEAD-box superfamily
Length = 1717
Score = 57.4 bits (137), Expect = 2e-07
Identities = 29/81 (35%), Positives = 44/81 (53%), Gaps = 9/81 (11%)
Query: 589 GFGVHHAGMSRSDRNITEKMFKSGAVNVLVCTATLAWGVNLPADCVIIKGTQVYDSKKGG 648
G G+HH+G++R R I E +F+ G + V++ T TL+ G+N+P V+ G +
Sbjct: 1224 GIGIHHSGLNRRYRQIVEVLFRCGQLTVVIATRTLSLGINMPCRTVVFLGDSL------- 1276
Query: 649 YTDLGISDVIQIFGRAGRPGF 669
L + Q GRAGR GF
Sbjct: 1277 --QLNALNFHQAAGRAGRRGF 1295
Score = 52.4 bits (124), Expect = 7e-06
Identities = 29/89 (32%), Positives = 45/89 (49%), Gaps = 9/89 (10%)
Query: 1421 SLQFGIGLHHAGLIESDRAISHELFLRSKIQILVATSTLAWGVNLPAHLVIIKGTQFFDA 1480
+L GIG+HH+GL R I LF ++ +++AT TL+ G+N+P V+ G
Sbjct: 1220 ALYRGIGIHHSGLNRRYRQIVEVLFRCGQLTVVIATRTLSLGINMPCRTVVFLGDSL--- 1276
Query: 1481 KIEGYRDMDLTDILQMMGRAGRPAYDTSG 1509
++ + Q GRAGR +D G
Sbjct: 1277 ------QLNALNFHQAAGRAGRRGFDLLG 1299
>7301051 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-box
superfamily
Length = 474
Score = 57.4 bits (137), Expect = 2e-07
Identities = 46/163 (28%), Positives = 81/163 (49%), Gaps = 27/163 (16%)
Query: 1154 FVGSPTGSGKTVVAELAIWHAFRDYPGSKVVYIAPMKALVRERVNDWRKRITPV---TGD 1210
FV + T +GKTVVAE AI + RD ++ +Y +P+KAL ++ D+RK V TGD
Sbjct: 281 FVAAHTSAGKTVVAEYAIALSKRDL--TRTIYTSPIKALSNQKYRDFRKTFKDVGLITGD 338
Query: 1211 RIVELTGDSVPDPQDIKDATIVITTPEKFDGISRNWQTRKFVQNVSLIIMDEIHLLAS-D 1269
+E T A+ +I T E S + +++ +I DE+H + + +
Sbjct: 339 LQIEPT------------ASCLIMTTEILR--SMLYCGSDVTRDLEWVIFDEVHYINNPE 384
Query: 1270 RGPILEMIVSRMNYVSSQTKKPIRLLGMSTAVSNAFDMASWLG 1312
RG + E ++ + + + ++ +S V N ++A W+G
Sbjct: 385 RGHVWEEVIILL-------PEHVNIIMLSATVPNTLELADWVG 420
>7300752 [R] KOG0354 DEAD-box like helicase
Length = 1383
Score = 55.8 bits (133), Expect = 7e-07
Identities = 39/131 (29%), Positives = 71/131 (53%), Gaps = 10/131 (7%)
Query: 1139 QTMVFHTLYHSNVSTFVGSPTGSGKTVVAELAIWHAFRDYPGSKVVYIAPMKALVRERVN 1198
QT+V L+ + T V PTG GKT +A + +++ +R YP K+V++AP + LV ++++
Sbjct: 63 QTIVQSALFKN---TLVVLPTGLGKTFIAAVVMYNFYRWYPKGKIVFMAPTRPLVSQQIH 119
Query: 1199 DWRKRITPVTGDRIVELTGDSVPDPQDIK---DATIVITTPE--KFDGISRNWQTRKFVQ 1253
+K I P + V+LTG +P P+ + + TP+ D + + +
Sbjct: 120 ASQK-IMPFPSEDTVQLTG-QLPRPKRAELWASKRVFFATPQVVHSDMLEADGECSFPFG 177
Query: 1254 NVSLIIMDEIH 1264
++ LI++DE H
Sbjct: 178 SIKLIVVDEAH 188
>At1g35530 [R] KOG0354 DEAD-box like helicase
Length = 1324
Score = 53.1 bits (126), Expect = 4e-06
Identities = 39/140 (27%), Positives = 70/140 (49%), Gaps = 10/140 (7%)
Query: 1129 IYP-FKYFNPMQTMVFHTLYHSNVSTFVGSPTGSGKTVVAELAIWHAFRDYPGSKVVYIA 1187
IYP F Q + T SN T V PTG GKT++A + +++ FR +P K+V+ A
Sbjct: 108 IYPGFVPLRDYQFAITKTALFSN--TLVALPTGLGKTLIAAVVMYNYFRWFPQGKIVFAA 165
Query: 1188 PMKALVRERVNDWRKRITPVTGDRIVELTGDSVPDPQDI--KDATIVITTPEKFDGISRN 1245
P + LV +++ I + + ++LTG + P + K + TP+ + ++
Sbjct: 166 PSRPLVMQQIEACH-NIVGIPQEWTIDLTGQTCPSKRAFLWKSKRVFFVTPQV---LEKD 221
Query: 1246 WQTRKFVQN-VSLIIMDEIH 1264
Q+ + N + +++DE H
Sbjct: 222 IQSGTCLTNYLVCLVIDEAH 241
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.320 0.136 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,929,091
Number of Sequences: 60738
Number of extensions: 4886815
Number of successful extensions: 13344
Number of sequences better than 1.0e-05: 48
Number of HSP's better than 0.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 12698
Number of HSP's gapped (non-prelim): 155
length of query: 1960
length of database: 30,389,216
effective HSP length: 121
effective length of query: 1839
effective length of database: 23,039,918
effective search space: 42370409202
effective search space used: 42370409202
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)