ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactI2764 check: MH J KOG0328 Translation, ribosomal structure and biogenesis Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactI2764 928255 927062 -398
(398 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YDR021w [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 579 e-165
SPAC1F5.10 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1... 484 e-137
7299019 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 477 e-134
CE09901 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 467 e-131
Hs7661920 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 467 e-131
At3g19760 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 464 e-130
SPAC1006.07 [J] KOG0327 Translation initiation factor 4F helicas... 456 e-128
7297048 [J] KOG0327 Translation initiation factor 4F helicase su... 446 e-125
Hs4503531 [J] KOG0327 Translation initiation factor 4F helicase ... 444 e-124
At1g51380 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 444 e-124
CE01341 [J] KOG0327 Translation initiation factor 4F helicase su... 440 e-123
Hs4503529 [J] KOG0327 Translation initiation factor 4F helicase ... 439 e-123
At3g13920 [J] KOG0327 Translation initiation factor 4F helicase ... 433 e-121
At1g72730 [J] KOG0327 Translation initiation factor 4F helicase ... 426 e-119
At1g54270 [J] KOG0327 Translation initiation factor 4F helicase ... 423 e-118
YKR059w [J] KOG0327 Translation initiation factor 4F helicase su... 407 e-113
YJL138c [J] KOG0327 Translation initiation factor 4F helicase su... 407 e-113
CE25531 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 395 e-110
CE01338 [J] KOG0327 Translation initiation factor 4F helicase su... 305 8e-83
YDL160c [A] KOG0326 ATP-dependent RNA helicase 283 2e-76
At2g45810 [A] KOG0326 ATP-dependent RNA helicase 280 2e-75
At3g61240 [A] KOG0326 ATP-dependent RNA helicase 279 6e-75
7297629 [A] KOG0326 ATP-dependent RNA helicase 275 7e-74
Hs4758140 [A] KOG0326 ATP-dependent RNA helicase 270 2e-72
SPBC776.09 [A] KOG0326 ATP-dependent RNA helicase 269 6e-72
CE00839 [A] KOG0326 ATP-dependent RNA helicase 269 6e-72
Hs6005743 [A] KOG0332 ATP-dependent RNA helicase 263 4e-70
Hs8922886 [A] KOG0332 ATP-dependent RNA helicase 261 1e-69
At4g00660 [A] KOG0326 ATP-dependent RNA helicase 261 1e-69
SPBC12C2.06 [A] KOG0332 ATP-dependent RNA helicase 258 1e-68
YOR046c [A] KOG0332 ATP-dependent RNA helicase 251 1e-66
SPAC17G6.14c [A] KOG0329 ATP-dependent RNA helicase 250 3e-66
Hs4758112 [A] KOG0329 ATP-dependent RNA helicase 245 1e-64
Hs21040371 [A] KOG0329 ATP-dependent RNA helicase 244 2e-64
ECU09g1200 [J] KOG0327 Translation initiation factor 4F helicase... 243 3e-64
At5g11170 [A] KOG0329 ATP-dependent RNA helicase 243 5e-64
At5g11200 [A] KOG0329 ATP-dependent RNA helicase 242 6e-64
Hs20548087 [J] KOG0327 Translation initiation factor 4F helicase... 242 8e-64
7296990 [A] KOG0329 ATP-dependent RNA helicase 239 4e-63
Hs21327697 [A] KOG0332 ATP-dependent RNA helicase 239 7e-63
HsM7019399 [A] KOG0332 ATP-dependent RNA helicase 238 1e-62
ECU09g1640 [A] KOG0326 ATP-dependent RNA helicase 234 2e-61
CE03025 [A] KOG0329 ATP-dependent RNA helicase 231 1e-60
YDL084w [A] KOG0329 ATP-dependent RNA helicase 231 1e-60
ECU02g1520 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1... 223 5e-58
At3g53110 [A] KOG0332 ATP-dependent RNA helicase 222 7e-58
CE18221 [A] KOG0332 ATP-dependent RNA helicase 221 1e-57
CE18220 [A] KOG0332 ATP-dependent RNA helicase 221 1e-57
CE18219 [A] KOG0332 ATP-dependent RNA helicase 221 1e-57
Hs14251212 [K] KOG4284 DEAD box protein 215 1e-55
At3g06480 [A] KOG0331 ATP-dependent RNA helicase 214 2e-55
At1g55150 [A] KOG0331 ATP-dependent RNA helicase 213 4e-55
7295314 [A] KOG0331 ATP-dependent RNA helicase 207 2e-53
SPCC10H11.01 [A] KOG0334 RNA helicase 206 4e-53
At2g33730 [A] KOG0333 U5 snRNP-like RNA helicase subunit 206 5e-53
7298989 [A] KOG0336 ATP-dependent RNA helicase 206 5e-53
7296646 [A] KOG0331 ATP-dependent RNA helicase 206 5e-53
At5g63120 [A] KOG0331 ATP-dependent RNA helicase 204 1e-52
7290853 [A] KOG0331 ATP-dependent RNA helicase 203 4e-52
YNL112w [A] KOG0331 ATP-dependent RNA helicase 201 2e-51
SPAC30D11.03 [A] KOG0338 ATP-dependent RNA helicase 200 3e-51
At3g01540 [A] KOG0331 ATP-dependent RNA helicase 200 4e-51
ECU08g1080 [A] KOG0331 ATP-dependent RNA helicase 199 6e-51
Hs5453840_1 [A] KOG0331 ATP-dependent RNA helicase 199 6e-51
CE18785 [A] KOG0331 ATP-dependent RNA helicase 198 1e-50
SPBP8B7.16c [A] KOG0331 ATP-dependent RNA helicase 196 4e-50
At5g14610 [A] KOG0331 ATP-dependent RNA helicase 196 4e-50
At2g47330 [A] KOG0339 ATP-dependent RNA helicase 196 4e-50
At1g77050 [A] KOG0337 ATP-dependent RNA helicase 196 5e-50
Hs10346129 [A] KOG0336 ATP-dependent RNA helicase 196 7e-50
At3g22330 [A] KOG0331 ATP-dependent RNA helicase 194 2e-49
Hs7662318 [A] KOG0334 RNA helicase 193 4e-49
At3g22310 [A] KOG0331 ATP-dependent RNA helicase 192 6e-49
7293060 [A] KOG0334 RNA helicase 192 1e-48
7299061 [A] KOG0335 ATP-dependent RNA helicase 191 2e-48
At1g20920 [A] KOG0334 RNA helicase 189 5e-48
7294824 [K] KOG4284 DEAD box protein 189 5e-48
SPCC1795.11 [A] KOG0335 ATP-dependent RNA helicase 189 8e-48
Hs4758138 [A] KOG0331 ATP-dependent RNA helicase 189 8e-48
Hs20149629 [A] KOG0330 ATP-dependent RNA helicase 188 1e-47
Hs17475661 [J] KOG0327 Translation initiation factor 4F helicase... 188 1e-47
SPAC31A2.07c [A] KOG0337 ATP-dependent RNA helicase 187 2e-47
SPBC17D1.06 [A] KOG0331 ATP-dependent RNA helicase 187 2e-47
YHR065c [A] KOG0330 ATP-dependent RNA helicase 187 3e-47
Hs21071032 [A] KOG0341 DEAD-box protein abstrakt 186 4e-47
CE00337 [A] KOG0330 ATP-dependent RNA helicase 186 4e-47
7294797 [A] KOG0339 ATP-dependent RNA helicase 185 9e-47
CE28031 [A] KOG0334 RNA helicase 184 2e-46
CE27427 [A] KOG0334 RNA helicase 184 2e-46
7298204 [A] KOG0335 ATP-dependent RNA helicase 184 2e-46
At5g60990 [A] KOG0330 ATP-dependent RNA helicase 184 3e-46
YGL078c [A] KOG0331 ATP-dependent RNA helicase 183 3e-46
Hs4759278 [A] KOG0333 U5 snRNP-like RNA helicase subunit 183 3e-46
Hs17474597 [A] KOG0333 U5 snRNP-like RNA helicase subunit 183 3e-46
YOR204w [A] KOG0335 ATP-dependent RNA helicase 183 4e-46
Hs19743937 [A] KOG0338 ATP-dependent RNA helicase 182 6e-46
Hs9507237 [A] KOG0335 ATP-dependent RNA helicase 181 2e-45
Hs13514813 [A] KOG0335 ATP-dependent RNA helicase 181 2e-45
At1g31970 [A] KOG0331 ATP-dependent RNA helicase 181 2e-45
7296891 [A] KOG0341 DEAD-box protein abstrakt 181 2e-45
Hs13514809 [A] KOG0335 ATP-dependent RNA helicase 181 2e-45
At4g33370 [A] KOG0341 DEAD-box protein abstrakt 181 2e-45
YLL008w [A] KOG0338 ATP-dependent RNA helicase 179 5e-45
YPL119c [A] KOG0335 ATP-dependent RNA helicase 179 6e-45
At3g58510 [A] KOG0335 ATP-dependent RNA helicase 179 6e-45
CE26887 [A] KOG0333 U5 snRNP-like RNA helicase subunit 179 8e-45
CE24878 [A] KOG0333 U5 snRNP-like RNA helicase subunit 179 8e-45
Hs11321632 [A] KOG0339 ATP-dependent RNA helicase 178 1e-44
7304081 [A] KOG0338 ATP-dependent RNA helicase 178 1e-44
ECU10g0690 [A] KOG0345 ATP-dependent RNA helicase 177 2e-44
SPCC63.11 [A] KOG0333 U5 snRNP-like RNA helicase subunit 177 3e-44
7298752 [A] KOG0330 ATP-dependent RNA helicase 177 3e-44
YJL033w [A] KOG0343 RNA Helicase 176 4e-44
CE28485 [K] KOG4284 DEAD box protein 176 4e-44
At5g51280 [A] KOG0341 DEAD-box protein abstrakt 176 5e-44
At2g42520 [A] KOG0335 ATP-dependent RNA helicase 176 5e-44
ECU10g0440 [A] KOG0330 ATP-dependent RNA helicase 175 9e-44
CE23832 [A] KOG0341 DEAD-box protein abstrakt 175 1e-43
Hs19923595 [A] KOG0337 ATP-dependent RNA helicase 174 2e-43
CE27030 [A] KOG0338 ATP-dependent RNA helicase 174 2e-43
SPAC823.08c [A] KOG0330 ATP-dependent RNA helicase 174 2e-43
At3g58570 [A] KOG0335 ATP-dependent RNA helicase 174 3e-43
7291960_2 [A] KOG0337 ATP-dependent RNA helicase 174 3e-43
Hs22057246 [A] KOG0336 ATP-dependent RNA helicase 172 6e-43
YDR243c [A] KOG0333 U5 snRNP-like RNA helicase subunit 172 8e-43
Hs13129006 [A] KOG0331 ATP-dependent RNA helicase 171 2e-42
YGL171w [A] KOG0344 ATP-dependent RNA helicase 170 3e-42
CE22474 [A] KOG0336 ATP-dependent RNA helicase 169 5e-42
CE28369 [A] KOG0335 ATP-dependent RNA helicase 169 9e-42
CE24451 [A] KOG0335 ATP-dependent RNA helicase 169 9e-42
At5g05450 [A] KOG0345 ATP-dependent RNA helicase 168 1e-41
Hs13787209 [A] KOG0331 ATP-dependent RNA helicase 166 4e-41
Hs15316941 [A] KOG0344 ATP-dependent RNA helicase 166 6e-41
CE27553 [A] KOG0337 ATP-dependent RNA helicase 166 6e-41
At3g09720 [A] KOG0344 ATP-dependent RNA helicase 165 1e-40
SPBC543.06c [A] KOG0340 ATP-dependent RNA helicase 164 2e-40
At1g16280 [A] KOG0340 ATP-dependent RNA helicase 164 3e-40
YHR169w [A] KOG0340 ATP-dependent RNA helicase 163 4e-40
CE25231 [A] KOG0343 RNA Helicase 163 4e-40
At3g18600 [A] KOG0342 ATP-dependent RNA helicase pitchoune 163 4e-40
7298459 [A] KOG0333 U5 snRNP-like RNA helicase subunit 162 6e-40
Hs13775232 [A] KOG0331 ATP-dependent RNA helicase 162 8e-40
At5g08610 [A] KOG0342 ATP-dependent RNA helicase pitchoune 162 1e-39
At5g63630 [A] KOG0342 ATP-dependent RNA helicase pitchoune 161 1e-39
ECU02g0670 [A] KOG0335 ATP-dependent RNA helicase 160 3e-39
CE17559 [A] KOG0339 ATP-dependent RNA helicase 160 3e-39
At1g71370 [A] KOG0345 ATP-dependent RNA helicase 157 2e-38
Hs13514831 [A] KOG0343 RNA Helicase 156 4e-38
At3g09620 [A] KOG0334 RNA helicase 156 4e-38
At5g08620 [A] KOG0342 ATP-dependent RNA helicase pitchoune 155 1e-37
CE23814 [A] KOG0340 ATP-dependent RNA helicase 155 1e-37
Hs9506931 [A] KOG0346 RNA helicase 154 2e-37
SPAC1093.05 [A] KOG0343 RNA Helicase 153 4e-37
7303950 [A] KOG0340 ATP-dependent RNA helicase 153 5e-37
CE25121 [A] KOG0335 ATP-dependent RNA helicase 152 6e-37
7293941 [A] KOG0344 ATP-dependent RNA helicase 152 6e-37
At1g12770_1 [J] KOG0327 Translation initiation factor 4F helicas... 152 1e-36
ECU10g1680 [A] KOG0343 RNA Helicase 151 1e-36
7299006 [A] KOG0345 ATP-dependent RNA helicase 151 1e-36
CE03821 [A] KOG0345 ATP-dependent RNA helicase 150 4e-36
CE26853 [A] KOG0342 ATP-dependent RNA helicase pitchoune 149 7e-36
CE11402 [A] KOG0334 RNA helicase 149 7e-36
YFL002c [A] KOG0345 ATP-dependent RNA helicase 147 2e-35
At5g62190 [A] KOG0331 ATP-dependent RNA helicase 147 3e-35
YMR290c [A] KOG0342 ATP-dependent RNA helicase pitchoune 146 5e-35
CE09012 [A] KOG0335 ATP-dependent RNA helicase 146 5e-35
At5g54910 [A] KOG0343 RNA Helicase 146 5e-35
YBR237w [A] KOG0334 RNA helicase 145 1e-34
Hs4826688 [J] KOG0327 Translation initiation factor 4F helicase ... 145 1e-34
CE07736 [A] KOG0335 ATP-dependent RNA helicase 145 1e-34
At5g65900 [A] KOG0342 ATP-dependent RNA helicase pitchoune 144 2e-34
7300808 [A] KOG0342 ATP-dependent RNA helicase pitchoune 144 2e-34
SPAC1F7.02c [A] KOG0342 ATP-dependent RNA helicase pitchoune 140 3e-33
CE27641 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 140 3e-33
SPAC22F3.08c [A] KOG0344 ATP-dependent RNA helicase 139 6e-33
At4g16630 [A] KOG0338 ATP-dependent RNA helicase 139 1e-32
At2g07750 [A] KOG0342 ATP-dependent RNA helicase pitchoune 138 1e-32
At1g63250 [A] KOG0342 ATP-dependent RNA helicase pitchoune 138 2e-32
CE27728 [A] KOG0346 RNA helicase 137 2e-32
Hs13787206 [A] KOG0342 ATP-dependent RNA helicase pitchoune 137 4e-32
Hs4826686 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 136 5e-32
7293369 [A] KOG0343 RNA Helicase 135 8e-32
CE06239 [A] KOG0344 ATP-dependent RNA helicase 133 5e-31
At2g40700 [A] KOG0348 ATP-dependent RNA helicase 133 5e-31
SPBC4F6.07c [A] KOG0347 RNA helicase 132 7e-31
Hs21040373 [A] KOG0329 ATP-dependent RNA helicase 132 9e-31
SPBC24C6.02 [A] KOG0345 ATP-dependent RNA helicase 131 2e-30
Hs17505907 [A] KOG0348 ATP-dependent RNA helicase 130 3e-30
Hs17474878 [A] KOG0333 U5 snRNP-like RNA helicase subunit 130 4e-30
Hs22059599_1 [J] KOG0328 Predicted ATP-dependent RNA helicase FA... 129 1e-29
YDR194c [A] KOG0342 ATP-dependent RNA helicase pitchoune 128 1e-29
Hs8922976 [A] KOG0330 ATP-dependent RNA helicase 128 1e-29
SPCC285.03 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 128 2e-29
CE27336 [A] KOG0334 RNA helicase 128 2e-29
At4g34910 [A] KOG0346 RNA helicase 127 4e-29
7295505 [A] KOG0346 RNA helicase 127 4e-29
CE26264 [A] KOG0335 ATP-dependent RNA helicase 126 5e-29
7296530 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 126 5e-29
YLR276c [A] KOG0346 RNA helicase 125 1e-28
CE29052 [A] KOG0335 ATP-dependent RNA helicase 125 1e-28
ECU05g1270 [A] KOG0331 ATP-dependent RNA helicase 125 1e-28
At3g16840 [A] KOG0347 RNA helicase 122 1e-27
SPBC691.04 [A] KOG0342 ATP-dependent RNA helicase pitchoune 117 2e-26
At3g06980 [A] KOG0331 ATP-dependent RNA helicase 115 1e-25
7290730 [A] KOG0331 ATP-dependent RNA helicase 112 7e-25
YNR038w [A] KOG0350 DEAD-box ATP-dependent RNA helicase 112 1e-24
SPBC21H7.04 [A] KOG0348 ATP-dependent RNA helicase 112 1e-24
YDL031w [A] KOG0337 ATP-dependent RNA helicase 112 1e-24
At1g71280 [A] KOG0345 ATP-dependent RNA helicase 109 6e-24
7296165 [A] KOG0330 ATP-dependent RNA helicase 109 6e-24
SPCC1494.06c [A] KOG0346 RNA helicase 108 2e-23
7294064 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 107 4e-23
Hs9966805 [A] KOG0347 RNA helicase 106 5e-23
CE11190 [A] KOG0347 RNA helicase 106 7e-23
YKR024c [A] KOG0348 ATP-dependent RNA helicase 103 4e-22
YBR142w [A] KOG0347 RNA helicase 103 6e-22
Hs22057430 [J] KOG0327 Translation initiation factor 4F helicase... 102 8e-22
At5g19210 [J] KOG0327 Translation initiation factor 4F helicase ... 102 8e-22
Hs20551983 [A] KOG0345 ATP-dependent RNA helicase 102 1e-21
At4g09730 [A] KOG0331 ATP-dependent RNA helicase 101 2e-21
At4g15850 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 97 3e-20
CE00456 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 97 4e-20
7302399 [A] KOG0347 RNA helicase 96 7e-20
Hs20555745 [A] KOG0326 ATP-dependent RNA helicase 93 6e-19
Hs18595975 [A] KOG0335 ATP-dependent RNA helicase 92 1e-18
ECU06g1250 [A] KOG0337 ATP-dependent RNA helicase 91 4e-18
Hs17459025 [J] KOG0327 Translation initiation factor 4F helicase... 89 9e-18
ECU07g1060 [A] KOG0344 ATP-dependent RNA helicase 89 1e-17
Hs22054507 [A] KOG0342 ATP-dependent RNA helicase pitchoune 86 1e-16
7293348 [A] KOG0348 ATP-dependent RNA helicase 86 1e-16
CE29051 [A] KOG0335 ATP-dependent RNA helicase 84 4e-16
Hs20336298 [A] KOG0348 ATP-dependent RNA helicase 83 8e-16
Hs9506609 [A] KOG0340 ATP-dependent RNA helicase 81 3e-15
ECU07g1130 [L] KOG0351 ATP-dependent DNA helicase 73 8e-13
SPAC212.11 [L] KOG0351 ATP-dependent DNA helicase 72 1e-12
Hs22063157 [A] KOG0329 ATP-dependent RNA helicase 71 2e-12
At1g27880 [L] KOG0351 ATP-dependent DNA helicase 70 4e-12
7299503 [L] KOG0351 ATP-dependent DNA helicase 69 2e-11
Hs22044561 [A] KOG0331 ATP-dependent RNA helicase 68 2e-11
CE06825 [A] KOG0335 ATP-dependent RNA helicase 67 6e-11
Hs20482355 [J] KOG0327 Translation initiation factor 4F helicase... 65 1e-10
At1g59990 [A] KOG0333 U5 snRNP-like RNA helicase subunit 65 1e-10
YMR190c [L] KOG0351 ATP-dependent DNA helicase 64 3e-10
At1g10930 [L] KOG0351 ATP-dependent DNA helicase 64 4e-10
SPAC2G11.12 [L] KOG0351 ATP-dependent DNA helicase 64 5e-10
Hs20479405 [J] KOG0327 Translation initiation factor 4F helicase... 63 9e-10
Hs22045464 [A] KOG0343 RNA Helicase 61 3e-09
At4g35740_2 [L] KOG0351 ATP-dependent DNA helicase 61 3e-09
Hs4557365 [L] KOG0351 ATP-dependent DNA helicase 60 7e-09
7300752 [R] KOG0354 DEAD-box like helicase 60 7e-09
7294377 [L] KOG0352 ATP-dependent DNA helicase 60 7e-09
CE28975 [A] KOG0335 ATP-dependent RNA helicase 59 1e-08
7295152 [L] KOG0351 ATP-dependent DNA helicase 59 1e-08
CE13130_2 [L] KOG0351 ATP-dependent DNA helicase 59 2e-08
Hs4759032 [L] KOG0352 ATP-dependent DNA helicase 58 2e-08
Hs5739524_2 [L] KOG0351 ATP-dependent DNA helicase 58 2e-08
YIR002c [R] KOG0354 DEAD-box like helicase 54 4e-07
CE00941 [L] KOG0352 ATP-dependent DNA helicase 54 4e-07
Hs4759030 [L] KOG0351 ATP-dependent DNA helicase 52 1e-06
CE26682 [R] KOG0353 ATP-dependent DNA helicase 51 3e-06
At3g05740 [L] KOG0351 ATP-dependent DNA helicase 51 3e-06
Hs14591902 [R] KOG0353 ATP-dependent DNA helicase 50 5e-06
>YDR021w [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 579 bits (1492), Expect = e-165
Identities = 293/399 (73%), Positives = 330/399 (82%), Gaps = 1/399 (0%)
Query: 1 MSFNRXXXXXXXXXXXXXXXVSATFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXG 60
MSF+R VS+TFESMNLK DLLRGIY YGFE P G
Sbjct: 1 MSFDREEDQKLKFKTSKKLKVSSTFESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISG 60
Query: 61 KDVIAQAQSGTGKTATFTIGLLQAIDSKSKELQALVLSPTRELASQSESVISNLGDYLNV 120
KDVIAQAQSGTGKTATFTIGLLQAID + K+LQAL+LSPTRELASQ V+ NLGDY+NV
Sbjct: 61 KDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQVVKNLGDYMNV 120
Query: 121 TAHACTGGKALQQDIKKVSKN-CQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLG 179
A A TGGK L+ D+KK+ K+ CQ VSGTPGRVLDMIK+Q+L RN ++LVLDEADELL
Sbjct: 121 NAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLS 180
Query: 180 ETLGFKQQIYDIFTKLPPTIQVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIK 239
ETLGFKQQIYDIF KLP QVVVVSATM+KDILE+T+KFM+DPVKILVKRDEISL+ IK
Sbjct: 181 ETLGFKQQIYDIFAKLPKNCQVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIK 240
Query: 240 QYYVDVEKEEWKFDTLCDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMK 299
QY V+V+KEEWKFDTLCD+YDSLTITQCVIFCNT+KKVDWLS++L Q+NF+V SMHGDMK
Sbjct: 241 QYVVNVDKEEWKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMK 300
Query: 300 QEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFG 359
QEERD+VMNDFR+G +RVLISTDVWARGIDVQQ+SLVINYD+P+ +ENYIHRIGRSGRFG
Sbjct: 301 QEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFG 360
Query: 360 RKGVAINFITKEERPKLKEIESHYRIKIKPTPANLEELS 398
RKGVAINFITK + KL+EIE Y IKI P PAN ELS
Sbjct: 361 RKGVAINFITKADLAKLREIEKFYSIKINPMPANFAELS 399
>SPAC1F5.10 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 394
Score = 484 bits (1247), Expect = e-137
Identities = 236/375 (62%), Positives = 297/375 (78%), Gaps = 2/375 (0%)
Query: 23 ATFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLL 82
++FE MNLK DLLRGIY YG+E P G+DVIAQAQSGTGKTATF+IG+L
Sbjct: 21 SSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGIL 80
Query: 83 QAIDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNC 142
Q+ID ++ QAL+LSPTRELA Q ++V+ LGD++NV HAC GG ++ DIKK+
Sbjct: 81 QSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLDYGQ 140
Query: 143 QVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVV 202
VVSGTPGRV DMI+R+ L RN K+L+LDEADELL + GFK+QIYDI+ LPP QVV
Sbjct: 141 HVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADELLNQ--GFKEQIYDIYRYLPPGTQVV 198
Query: 203 VVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSL 262
VVSAT+ +D+LE+T KF ++PV+ILVKRDE++L+ +KQY++ VEKEEWKFDTLCDLYD+L
Sbjct: 199 VVSATLPQDVLEMTNKFTTNPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTL 258
Query: 263 TITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTD 322
TITQ VIFCN+R+KVDWL+ K+ + NF+V+SMHG+M Q+ERD +M DFR G +RVLI TD
Sbjct: 259 TITQAVIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERDAIMQDFRQGNSRVLICTD 318
Query: 323 VWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIESH 382
+WARGIDVQQ+SLVINYD+P N ENYIHRIGRSGRFGRKGVAINF+T E+ L++IE +
Sbjct: 319 IWARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVTNEDVRILRDIEQY 378
Query: 383 YRIKIKPTPANLEEL 397
Y I P N+ ++
Sbjct: 379 YSTVIDEMPMNIGDM 393
>7299019 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 477 bits (1227), Expect = e-134
Identities = 233/377 (61%), Positives = 296/377 (77%), Gaps = 2/377 (0%)
Query: 21 VSATFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIG 80
V TF +MNLK +LLRGIY YGFE P G+DVIAQAQSGTGKTATF+I
Sbjct: 24 VIPTFNAMNLKEELLRGIYAYGFEKPSAIQQRSITPIVKGRDVIAQAQSGTGKTATFSIS 83
Query: 81 LLQAIDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSK 140
+LQ++D+ +E Q L LSPTRELA Q + VI LGD +NV H C GG L +DI+K+
Sbjct: 84 ILQSLDTTLRETQVLCLSPTRELAVQIQKVILALGDMMNVQCHVCIGGTNLGEDIRKLDY 143
Query: 141 NCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQ 200
+VSGTPGRV DMIKR+VL R K+LVLDEADE+L + GFK+QIYD++ LPP Q
Sbjct: 144 GQHIVSGTPGRVFDMIKRRVLRTRAIKMLVLDEADEMLNK--GFKEQIYDVYRYLPPATQ 201
Query: 201 VVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYD 260
VV++SAT+ +ILE+T KFM+DP++ILVKRDE++L+ IKQ++V VE+EEWKFDTLCDLYD
Sbjct: 202 VVLISATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 261
Query: 261 SLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLIS 320
+LTITQ VIFCNT++KVDWL+ K+ + NF+VSSMHGDM Q+ERD++M +FR+G++RVLI+
Sbjct: 262 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRAGQSRVLIT 321
Query: 321 TDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIE 380
TDVWARGIDVQQ+SLVINYD+P+N E YIHRIGRSGRFGRKGVAINF+ ++ L++IE
Sbjct: 322 TDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIE 381
Query: 381 SHYRIKIKPTPANLEEL 397
+Y +I P N+ +L
Sbjct: 382 QYYSTQIDEMPMNVADL 398
>CE09901 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 467 bits (1202), Expect = e-131
Identities = 228/377 (60%), Positives = 296/377 (78%), Gaps = 2/377 (0%)
Query: 21 VSATFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIG 80
V TF+ M L+ DLLRGIY YGFE P +DVIAQAQSGTGKTATF+I
Sbjct: 24 VIPTFDKMGLREDLLRGIYAYGFEKPSAIQQRAVPAILKARDVIAQAQSGTGKTATFSIS 83
Query: 81 LLQAIDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSK 140
+LQ++D++ +E QAL+LSPTRELA Q + V+ LGDY+NV HAC GG L +DI+K+
Sbjct: 84 VLQSLDTQVRETQALILSPTRELAVQIQKVVLALGDYMNVQCHACIGGTNLGEDIRKLDY 143
Query: 141 NCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQ 200
VVSGTPGRV DMI+R+ L R K+LVLDEADE+L + GFK+Q+YDI+ LPP Q
Sbjct: 144 GQHVVSGTPGRVFDMIRRRNLRTRAIKLLVLDEADEMLNK--GFKEQLYDIYRYLPPGAQ 201
Query: 201 VVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYD 260
VV++SAT+ +ILE+T KFM+DP++ILVKRDE++L+ IKQ++V V++EEWKFDTL DLYD
Sbjct: 202 VVLLSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLIDLYD 261
Query: 261 SLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLIS 320
+LTITQ V+FCNTR+KVDWL+ K+ + NF+VSSMHGDM+Q++RD+VM +FR+G RVLIS
Sbjct: 262 TLTITQAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLIS 321
Query: 321 TDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIE 380
TDVWARG+DV Q+SLVINYD+P+N E YIHRIGRSGRFGRKGVAINF+ +++ L++IE
Sbjct: 322 TDVWARGLDVPQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQDDVRILRDIE 381
Query: 381 SHYRIKIKPTPANLEEL 397
+Y +I P N+ ++
Sbjct: 382 QYYSTQIDEMPMNIADI 398
>Hs7661920 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 411
Score = 467 bits (1201), Expect = e-131
Identities = 225/377 (59%), Positives = 295/377 (77%), Gaps = 2/377 (0%)
Query: 21 VSATFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIG 80
V+ TF++M L+ DLLRGIY YGFE P G+DVIAQ+QSGTGKTATF+I
Sbjct: 36 VTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSIS 95
Query: 81 LLQAIDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSK 140
+LQ +D + +E QAL+L+PTRELA Q + + LGDY+NV HAC GG + +DI+K+
Sbjct: 96 VLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY 155
Query: 141 NCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQ 200
VV+GTPGRV DMI+R+ L R K+LVLDEADE+L + GFK+QIYD++ LPP Q
Sbjct: 156 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNK--GFKEQIYDVYRYLPPATQ 213
Query: 201 VVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYD 260
VV++SAT+ +ILE+T KFM+DP++ILVKRDE++L+ IKQ++V VE+EEWKFDTLCDLYD
Sbjct: 214 VVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 273
Query: 261 SLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLIS 320
+LTITQ VIFCNT++KVDWL+ K+ + NF+VSSMHGDM Q+ER+ +M +FRSG +RVLIS
Sbjct: 274 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLIS 333
Query: 321 TDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIE 380
TDVWARG+DV Q+SL+INYD+P+N E YIHRIGRSGR+GRKGVAINF+ ++ L++IE
Sbjct: 334 TDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIE 393
Query: 381 SHYRIKIKPTPANLEEL 397
+Y +I P N+ +L
Sbjct: 394 QYYSTQIDEMPMNVADL 410
>At3g19760 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 408
Score = 464 bits (1194), Expect = e-130
Identities = 225/374 (60%), Positives = 290/374 (77%), Gaps = 2/374 (0%)
Query: 24 TFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQ 83
+F M +K D+LRG+Y YGFE P G+DVIAQAQSGTGKT+ + + Q
Sbjct: 36 SFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQ 95
Query: 84 AIDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQ 143
+D+ S+E+QAL+LSPTRELA+Q+E I +G + N+ AHAC GG ++ +DI+K+
Sbjct: 96 VVDTSSREVQALILSPTRELATQTEKTIQAIGLHANIQAHACIGGNSVGEDIRKLEHGVH 155
Query: 144 VVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVVV 203
VVSGTPGRV DMIKR+ L R K+L+LDE+DE+L GFK QIYD++ LPP +QV +
Sbjct: 156 VVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSR--GFKDQIYDVYRYLPPDLQVCL 213
Query: 204 VSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLT 263
VSAT+ +ILE+T KFM++PVKILVKRDE++L+ IKQ++V VEKEEWKFDTLCDLYD+LT
Sbjct: 214 VSATLPHEILEMTSKFMTEPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLT 273
Query: 264 ITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDV 323
ITQ VIFCNT++KVD+LS K+ NF+VSSMHGDM Q+ERD +MN+FRSG +RVLI+TDV
Sbjct: 274 ITQAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSRVLITTDV 333
Query: 324 WARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIESHY 383
WARGIDVQQ+SLVINYD+P+N E YIHRIGRSGRFGRKGVAINF+ ++ L++IE +Y
Sbjct: 334 WARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYY 393
Query: 384 RIKIKPTPANLEEL 397
+I P N+ +L
Sbjct: 394 STQIDEMPMNVADL 407
>SPAC1006.07 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 392
Score = 456 bits (1173), Expect = e-128
Identities = 222/374 (59%), Positives = 286/374 (76%), Gaps = 2/374 (0%)
Query: 24 TFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQ 83
TF+ MNLKP+LLRGIY YGFE P +DV+AQAQSGTGKTATF+I +LQ
Sbjct: 20 TFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQ 79
Query: 84 AIDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQ 143
ID+ K+ QAL+L+PTRELA Q + V+ LGD +NV HAC GG ++ D+ +
Sbjct: 80 KIDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAALQAGVH 139
Query: 144 VVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVVV 203
VV GTPGRV DMI+R+ L ++ VLDEADE+L GFK QIYDIF LPPT QVV+
Sbjct: 140 VVVGTPGRVHDMIQRRALPTDAVQMFVLDEADEMLSR--GFKDQIYDIFQLLPPTAQVVL 197
Query: 204 VSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLT 263
+SATM +D+LE+T KFM DP++ILVK+DE++L+ IKQ+YV VEKEEWK DTLCDLY+++T
Sbjct: 198 LSATMPQDVLEVTTKFMRDPIRILVKKDELTLEGIKQFYVAVEKEEWKLDTLCDLYETVT 257
Query: 264 ITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDV 323
+TQ VIFCNTR+KVDWL+ +LT+ +F+VSSMHGDM Q +RD +M++FR+G +R+LI+TD+
Sbjct: 258 VTQAVIFCNTRRKVDWLTEQLTERDFTVSSMHGDMDQAQRDTLMHEFRTGSSRILITTDL 317
Query: 324 WARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIESHY 383
ARGIDVQQ+SLVINYD+P N ENYIHRIGR GRFGRKGV+INF+T ++ ++EIE Y
Sbjct: 318 LARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVSINFVTNDDVRMMREIEQFY 377
Query: 384 RIKIKPTPANLEEL 397
I+ P N+ +L
Sbjct: 378 NTHIEEMPMNIADL 391
>7297048 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 389
Score = 446 bits (1147), Expect = e-125
Identities = 218/373 (58%), Positives = 286/373 (76%), Gaps = 2/373 (0%)
Query: 25 FESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQA 84
F+ MNL+ +LLRGIY YGFE P G+DVIAQAQSGTGKTATF+I +LQ
Sbjct: 18 FDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATFSIAILQQ 77
Query: 85 IDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQV 144
ID+ +E QAL+L+PTRELA+Q + V+ LG+Y+ V +HAC GG +++D + + C V
Sbjct: 78 IDTSIRECQALILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILESGCHV 137
Query: 145 VSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVVVV 204
V GTPGRV DMI R+VL + K+ VLDEADE+L GFK QI D+F LPP +QV+++
Sbjct: 138 VVGTPGRVYDMINRKVLRTQYIKLFVLDEADEMLSR--GFKDQIQDVFKMLPPDVQVILL 195
Query: 205 SATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLTI 264
SATM D+LE+++ FM DPV ILVK++E++L+ IKQ+YV+V++E WK TLCDLYD+L+I
Sbjct: 196 SATMPPDVLEVSRCFMRDPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLCDLYDTLSI 255
Query: 265 TQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVW 324
TQ VIFCNTR+KVD L+++++ NF+VS+MHGDM+Q +R+ +M FRSG +RVLI+TD+
Sbjct: 256 TQSVIFCNTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLITTDLL 315
Query: 325 ARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIESHYR 384
ARGIDVQQ+SLVINYD+P N ENYIHRIGR GRFGRKGVAINFIT ++R LK+IE Y
Sbjct: 316 ARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDDRRILKDIEQFYH 375
Query: 385 IKIKPTPANLEEL 397
I+ PAN+ +L
Sbjct: 376 TTIEEMPANIADL 388
>Hs4503531 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 407
Score = 444 bits (1142), Expect = e-124
Identities = 220/374 (58%), Positives = 284/374 (75%), Gaps = 3/374 (0%)
Query: 25 FESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQA 84
F+ MNLK LLRGIY YGFE P G DVIAQAQSGTGKTATF I +LQ
Sbjct: 35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ 94
Query: 85 IDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNC-Q 143
++ + KE QALVL+PTRELA Q + VI LGDY+ T HAC GG ++ +++K+
Sbjct: 95 LEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPH 154
Query: 144 VVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVVV 203
+V GTPGRV DM+ R+ L+ + K+ VLDEADE+L GFK QIY+IF KL +IQVV
Sbjct: 155 IVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSR--GFKDQIYEIFQKLNTSIQVVF 212
Query: 204 VSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLT 263
SATM D+LE+TKKFM DP++ILVK++E++L+ IKQ+Y++VE+EEWK DTLCDLY++LT
Sbjct: 213 ASATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLT 272
Query: 264 ITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDV 323
ITQ VIF NTR+KVDWL+ K+ +F+VS++HGDM Q+ERD +M +FRSG +RVLI+TD+
Sbjct: 273 ITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDL 332
Query: 324 WARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIESHY 383
ARGIDVQQ+SLVINYD+P N ENYIHRIGR GRFGRKGVAINF+T+E++ L++IE+ Y
Sbjct: 333 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFY 392
Query: 384 RIKIKPTPANLEEL 397
++ P N+ +L
Sbjct: 393 NTTVEEMPMNVADL 406
>At1g51380 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 392
Score = 444 bits (1141), Expect = e-124
Identities = 216/371 (58%), Positives = 281/371 (75%), Gaps = 2/371 (0%)
Query: 24 TFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQ 83
+F+ M + +LRG+Y YG++ P G+DVIAQAQSGTGKT+ I + Q
Sbjct: 23 SFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISVCQ 82
Query: 84 AIDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQ 143
++ S+++Q LVLSP+RELASQ+E I +G + N+ AHAC GGK++ +DIKK+ +
Sbjct: 83 IVNISSRKVQVLVLSPSRELASQTEKTIQAIGAHTNIQAHACIGGKSIGEDIKKLERGVH 142
Query: 144 VVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVVV 203
VSGTPGRV DMIKR L + K+LVLDE+DE+L + G K QIYD++ LP IQV +
Sbjct: 143 AVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEMLSK--GLKDQIYDVYRALPHDIQVCL 200
Query: 204 VSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLT 263
+SAT+ ++ILE+T+KFM+DPV+ILVK DE++L+ IKQYYVDV+KEEWKFDTLCDLY LT
Sbjct: 201 ISATLPQEILEMTEKFMTDPVRILVKPDELTLEGIKQYYVDVDKEEWKFDTLCDLYGRLT 260
Query: 264 ITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDV 323
I Q +IFCNTR+KVDWL+ K+ +NF VSSMHGD +Q+ERD +MN FRS K+RVLI++DV
Sbjct: 261 INQAIIFCNTRQKVDWLTEKMRSSNFIVSSMHGDKRQKERDDIMNQFRSFKSRVLIASDV 320
Query: 324 WARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIESHY 383
WARGIDVQ +S VINYDIP+N E YIHRIGR+GRFGR+GVAINF+ + LK+IE HY
Sbjct: 321 WARGIDVQTVSHVINYDIPNNPELYIHRIGRAGRFGREGVAINFVKSSDMKDLKDIERHY 380
Query: 384 RIKIKPTPANL 394
KI+ PA+L
Sbjct: 381 GTKIREMPADL 391
>CE01341 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 402
Score = 440 bits (1132), Expect = e-123
Identities = 212/377 (56%), Positives = 284/377 (75%), Gaps = 2/377 (0%)
Query: 21 VSATFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIG 80
V +F+ M LK +LLRGIY +GFE P GKDVIAQAQSGTGKTATF++
Sbjct: 27 VVESFDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVS 86
Query: 81 LLQAIDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSK 140
+LQ ID + +QALV++PTRELA Q + V+S LG+YLNV C GG +++ D +K+
Sbjct: 87 ILQRIDHEDPHVQALVMAPTRELAQQIQKVMSALGEYLNVNILPCIGGTSVRDDQRKLEA 146
Query: 141 NCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQ 200
VV GTPGRV DMI R L+ K+ VLDEADE+L GFK QIY++F +P +Q
Sbjct: 147 GIHVVVGTPGRVGDMINRNALDTSRIKMFVLDEADEMLSR--GFKDQIYEVFRSMPQDVQ 204
Query: 201 VVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYD 260
VV++SATM ++L++T +FM +P++ILVK+DE++L+ I+Q+Y++V+K+EWKFD LCDLY+
Sbjct: 205 VVLLSATMPSEVLDVTNRFMRNPIRILVKKDELTLEGIRQFYINVQKDEWKFDCLCDLYN 264
Query: 261 SLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLIS 320
+ +TQ VIFCNTR+KVD L+ K+T+ F+VS +HGDM Q ERD +M +FRSG +RVLI+
Sbjct: 265 VVNVTQAVIFCNTRRKVDTLTEKMTENQFTVSCLHGDMDQAERDTIMREFRSGSSRVLIT 324
Query: 321 TDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIE 380
TD+ ARGIDVQQ+SLVINYD+P N ENYIHRIGRSGRFGRKGVAINF+T+ + +LKEIE
Sbjct: 325 TDILARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTENDARQLKEIE 384
Query: 381 SHYRIKIKPTPANLEEL 397
S+Y +I+ P ++ +L
Sbjct: 385 SYYTTQIEEMPESIADL 401
>Hs4503529 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 406
Score = 439 bits (1130), Expect = e-123
Identities = 216/375 (57%), Positives = 281/375 (74%), Gaps = 3/375 (0%)
Query: 24 TFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQ 83
+F+ MNL LLRGIY YGFE P G DVIAQAQSGTGKTATF I +LQ
Sbjct: 33 SFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQ 92
Query: 84 AIDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNC- 142
I+ K QALVL+PTRELA Q + V+ LGDY+ + HAC GG ++ +++K+
Sbjct: 93 QIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAP 152
Query: 143 QVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVV 202
++ GTPGRV DM+ R+ L+ + K+ VLDEADE+L GFK QIYDIF KL QVV
Sbjct: 153 HIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSR--GFKDQIYDIFQKLNSNTQVV 210
Query: 203 VVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSL 262
++SATM D+LE+TKKFM DP++ILVK++E++L+ I+Q+Y++VE+EEWK DTLCDLY++L
Sbjct: 211 LLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETL 270
Query: 263 TITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTD 322
TITQ VIF NTR+KVDWL+ K+ +F+VS+MHGDM Q+ERD +M +FRSG +RVLI+TD
Sbjct: 271 TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD 330
Query: 323 VWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIESH 382
+ ARGIDVQQ+SLVINYD+P N ENYIHRIGR GRFGRKGVAIN +T+E++ L++IE+
Sbjct: 331 LLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETF 390
Query: 383 YRIKIKPTPANLEEL 397
Y I+ P N+ +L
Sbjct: 391 YNTSIEEMPLNVADL 405
>At3g13920 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 412
Score = 433 bits (1114), Expect = e-121
Identities = 220/377 (58%), Positives = 277/377 (73%), Gaps = 2/377 (0%)
Query: 21 VSATFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIG 80
V +F++M L+ +LLRGIY YGFE P G DVI QAQSGTGKTATF G
Sbjct: 37 VHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSG 96
Query: 81 LLQAIDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSK 140
+LQ +D + QALVL+PTRELA Q E V+ LGDYL V HAC GG ++++D + +
Sbjct: 97 VLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA 156
Query: 141 NCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQ 200
VV GTPGRV DM+KRQ L N K+ VLDEADE+L GFK QIYDIF LPP IQ
Sbjct: 157 GVHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSR--GFKDQIYDIFQLLPPKIQ 214
Query: 201 VVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYD 260
V V SATM + LEIT+KFMS PV+ILVKRDE++L+ IKQ+YV+VEKEEWK +TLCDLY+
Sbjct: 215 VGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYE 274
Query: 261 SLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLIS 320
+L ITQ VIF NTR+KVDWL+ K+ + +VS+ HGDM Q RD +M +FRSG +RVLI+
Sbjct: 275 TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 334
Query: 321 TDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIE 380
TD+ ARGIDVQQ+SLVIN+D+P ENY+HRIGRSGRFGRKGVAINF+T+++ L +I+
Sbjct: 335 TDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ 394
Query: 381 SHYRIKIKPTPANLEEL 397
Y + ++ P+N+ +L
Sbjct: 395 KFYNVVVEELPSNVADL 411
>At1g72730 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 414
Score = 426 bits (1094), Expect = e-119
Identities = 215/377 (57%), Positives = 275/377 (72%), Gaps = 2/377 (0%)
Query: 21 VSATFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIG 80
V +F++M L+PDLLRGIY YGFE P G DVI QAQSGTGKTATF G
Sbjct: 39 VCDSFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSG 98
Query: 81 LLQAIDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSK 140
+LQ +D + QALVL+PTRELA Q E V+ LGDYL V A AC GG ++++D + +
Sbjct: 99 VLQQLDISLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQS 158
Query: 141 NCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQ 200
VV GTPGRV D+++RQ L K+ VLDEADE+L GFK QIYDIF LP +Q
Sbjct: 159 GVHVVVGTPGRVFDLLRRQSLRADAIKMFVLDEADEMLSR--GFKDQIYDIFQLLPSKVQ 216
Query: 201 VVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYD 260
V V SATM + LEIT+KFM+ PV+ILVKRDE++L+ IKQ+YV+V+KEEWK +TLCDLY+
Sbjct: 217 VGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYE 276
Query: 261 SLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLIS 320
+L ITQ VIF NTR+KVDWL+ K+ + +VS+ HGDM Q RD +M +FRSG +RVLI+
Sbjct: 277 TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 336
Query: 321 TDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIE 380
TD+ ARGIDVQQ+SLVIN+D+P ENY+HRIGRSGRFGRKGVAINF+T E+ + +I+
Sbjct: 337 TDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFMTSEDERMMADIQ 396
Query: 381 SHYRIKIKPTPANLEEL 397
Y + ++ P+N+ +L
Sbjct: 397 RFYNVVVEELPSNVADL 413
>At1g54270 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 412
Score = 423 bits (1088), Expect = e-118
Identities = 216/377 (57%), Positives = 275/377 (72%), Gaps = 2/377 (0%)
Query: 21 VSATFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIG 80
V +F++M L+ +LLRGIY YGFE P G DVI QAQSGTGKTATF G
Sbjct: 37 VHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSG 96
Query: 81 LLQAIDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSK 140
+LQ +D + QALVL+PTRELA Q E V+ LGDY V HAC GG ++++D + +
Sbjct: 97 VLQQLDYALLQCQALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILQA 156
Query: 141 NCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQ 200
VV GTPGRV DM++RQ L K+ VLDEADE+L GFK QIYDIF LPP IQ
Sbjct: 157 GVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSR--GFKDQIYDIFQLLPPKIQ 214
Query: 201 VVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYD 260
V V SATM + LEIT+KFMS PV+ILVKRDE++L+ IKQ+YV+VEKE+WK +TLCDLY+
Sbjct: 215 VGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEDWKLETLCDLYE 274
Query: 261 SLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLIS 320
+L ITQ VIF NTR+KVDWL+ K+ + +VS+ HGDM Q RD +M +FRSG +RVLI+
Sbjct: 275 TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 334
Query: 321 TDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIE 380
TD+ ARGIDVQQ+SLVIN+D+P ENY+HRIGRSGRFGRKGVAINF+T +++ L +I+
Sbjct: 335 TDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDQRMLFDIQ 394
Query: 381 SHYRIKIKPTPANLEEL 397
Y + ++ P+N+ +L
Sbjct: 395 KFYNVVVEELPSNVADL 411
>YKR059w [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 395
Score = 407 bits (1046), Expect = e-113
Identities = 202/373 (54%), Positives = 275/373 (73%), Gaps = 3/373 (0%)
Query: 25 FESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQA 84
F+ M L +LLRG++ YGFE P G DV+AQAQSGTGKT TF+I LQ
Sbjct: 24 FDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQR 83
Query: 85 IDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQV 144
ID+ K QAL+L+PTRELA Q + V+ L ++++ HAC GG + +D + + ++ Q+
Sbjct: 84 IDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL-RDAQI 142
Query: 145 VSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVVVV 204
V GTPGRV D I+R+ K+ +LDEADE+L GFK+QIY IFT LPPT QVV++
Sbjct: 143 VVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSS--GFKEQIYQIFTLLPPTTQVVLL 200
Query: 205 SATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLTI 264
SATM D+LE+T KFM +PV+ILVK+DE++L+ IKQ+YV+VE+EE+K++ L DLYDS+++
Sbjct: 201 SATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSISV 260
Query: 265 TQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVW 324
TQ VIFCNTR+KV+ L+ KL F+VS+++ D+ Q+ERD +M +FRSG +R+LISTD+
Sbjct: 261 TQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLL 320
Query: 325 ARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIESHYR 384
ARGIDVQQ+SLVINYD+P N ENYIHRIGR GRFGRKGVAINF+T E+ ++E+E Y
Sbjct: 321 ARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYS 380
Query: 385 IKIKPTPANLEEL 397
+I+ P+++ L
Sbjct: 381 TQIEELPSDIATL 393
>YJL138c [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 395
Score = 407 bits (1046), Expect = e-113
Identities = 202/373 (54%), Positives = 275/373 (73%), Gaps = 3/373 (0%)
Query: 25 FESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQA 84
F+ M L +LLRG++ YGFE P G DV+AQAQSGTGKT TF+I LQ
Sbjct: 24 FDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQR 83
Query: 85 IDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQV 144
ID+ K QAL+L+PTRELA Q + V+ L ++++ HAC GG + +D + + ++ Q+
Sbjct: 84 IDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL-RDAQI 142
Query: 145 VSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVVVV 204
V GTPGRV D I+R+ K+ +LDEADE+L GFK+QIY IFT LPPT QVV++
Sbjct: 143 VVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSS--GFKEQIYQIFTLLPPTTQVVLL 200
Query: 205 SATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLTI 264
SATM D+LE+T KFM +PV+ILVK+DE++L+ IKQ+YV+VE+EE+K++ L DLYDS+++
Sbjct: 201 SATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSISV 260
Query: 265 TQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVW 324
TQ VIFCNTR+KV+ L+ KL F+VS+++ D+ Q+ERD +M +FRSG +R+LISTD+
Sbjct: 261 TQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLL 320
Query: 325 ARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIESHYR 384
ARGIDVQQ+SLVINYD+P N ENYIHRIGR GRFGRKGVAINF+T E+ ++E+E Y
Sbjct: 321 ARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYS 380
Query: 385 IKIKPTPANLEEL 397
+I+ P+++ L
Sbjct: 381 TQIEELPSDIATL 393
>CE25531 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 508
Score = 395 bits (1014), Expect = e-110
Identities = 193/313 (61%), Positives = 248/313 (78%), Gaps = 2/313 (0%)
Query: 24 TFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQ 83
TF+ M L+ DLLRGIY YGFE P +DVIAQAQSGTGKTATF+I +LQ
Sbjct: 27 TFDKMGLREDLLRGIYAYGFEKPSAIQQRAIPAILKARDVIAQAQSGTGKTATFSISVLQ 86
Query: 84 AIDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQ 143
++D++ +E QAL+LSPTRELA Q + V+ LGDY+NV HAC GG L +DI+K+
Sbjct: 87 SLDTQVRETQALILSPTRELAVQIQKVVLALGDYMNVQCHACIGGTNLGEDIRKLDYGQH 146
Query: 144 VVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVVV 203
VVSGTPGRV DMI+R+ L R K+LVLDEADE+L + GFK+Q+YDI+ LPP QVV+
Sbjct: 147 VVSGTPGRVFDMIRRRNLRTRAIKLLVLDEADEMLNK--GFKEQLYDIYRYLPPGAQVVL 204
Query: 204 VSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLT 263
+SAT+ +ILE+T KFM+DP++ILVKRDE++L+ IKQ++V V++EEWKFDTL DLYD+LT
Sbjct: 205 LSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLIDLYDTLT 264
Query: 264 ITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDV 323
ITQ V+FCNTR+KVDWL+ K+ + NF+VSSMHGDM+Q++RD+VM +FR+G RVLISTDV
Sbjct: 265 ITQAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLISTDV 324
Query: 324 WARGIDVQQISLV 336
WARG+DV Q+SLV
Sbjct: 325 WARGLDVPQVSLV 337
Score = 78.2 bits (191), Expect = 2e-14
Identities = 35/62 (56%), Positives = 48/62 (76%)
Query: 336 VINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIESHYRIKIKPTPANLE 395
VINYD+P+N E YIHRIGRSGRFGRKGVAINF+ +++ L++IE +Y +I P N+
Sbjct: 446 VINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQDDVRILRDIEQYYSTQIDEMPMNIA 505
Query: 396 EL 397
++
Sbjct: 506 DI 507
>CE01338 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 363
Score = 305 bits (781), Expect = 8e-83
Identities = 158/369 (42%), Positives = 236/369 (63%), Gaps = 11/369 (2%)
Query: 28 MNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQAIDS 87
M LK +LLRGIY +GFE P GKDV Q+Q+G+GKT I +LQ ID
Sbjct: 1 MELKEELLRGIYGFGFEKPSAIQKSAVAPCTTGKDVTIQSQAGSGKTVISLIDILQGIDC 60
Query: 88 KSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQVVSG 147
+ LQ ++L+P R +A ++ + +LG LNV A C G ++ K V+ G
Sbjct: 61 EDAHLQVILLAPQRGMAQRAHEQLKSLGRNLNVNA-TCLGFDTTAEN----DKISHVLMG 115
Query: 148 TPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVVVVSAT 207
TP L I + K+ VLDEADE+L + GFK QIY++F +P +QVV++SAT
Sbjct: 116 TPKDFLSNIPSDTSRI---KMFVLDEADEMLSK--GFKDQIYEVFRSMPQDVQVVLLSAT 170
Query: 208 MSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLTITQC 267
M ++L++T +FM DP++ILVK+DE++L+ I+Q+Y++V+K+EWKF+ LCDL + TQ
Sbjct: 171 MPSEVLDVTNRFMRDPIRILVKKDELTLEGIRQFYINVQKDEWKFNCLCDLLKTSRETQA 230
Query: 268 VIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARG 327
+IFCNTR++V L+ +L VS HG+M+ ER+ ++ DF S RVL++TD+ ARG
Sbjct: 231 LIFCNTRRRVTQLTEQLMSIPIKVSCFHGNMEHNEREDMVKDFNSRNTRVLVTTDLMARG 290
Query: 328 IDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIESHYRIKI 387
+++++ SL+INYD+ N+ENY+ R GR G FG KG+ I+F T+ + LK+IE+HY +I
Sbjct: 291 MNIRK-SLIINYDVSGNMENYMLRNGRQGNFGSKGLPISFFTENDISDLKKIENHYSTRI 349
Query: 388 KPTPANLEE 396
+ P + E
Sbjct: 350 EEMPESFLE 358
>YDL160c [A] KOG0326 ATP-dependent RNA helicase
Length = 506
Score = 283 bits (725), Expect = 2e-76
Identities = 149/373 (39%), Positives = 227/373 (59%), Gaps = 4/373 (1%)
Query: 24 TFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQ 83
TFE LK +LL GI+ GFE P G+D++A+A++GTGKTA F I L+
Sbjct: 47 TFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLE 106
Query: 84 AIDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQ 143
+ K ++QAL++ PTRELA Q+ V+ LG + ++ TGG L+ DI ++++
Sbjct: 107 KVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVH 166
Query: 144 VVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVVV 203
++ GTPGRVLD+ R+V ++ +C + ++DEAD++L FK I I + LPPT Q ++
Sbjct: 167 ILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRD--FKTIIEQILSFLPPTHQSLL 224
Query: 204 VSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLT 263
SAT + E K + P +I + +E++L I QYY VE+ + K L L+ L
Sbjct: 225 FSATFPLTVKEFMVKHLHKPYEINLM-EELTLKGITQYYAFVEERQ-KLHCLNTLFSKLQ 282
Query: 264 ITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDV 323
I Q +IFCN+ +V+ L++K+T +S H MKQ+ER++V ++FR GK R L+ +D+
Sbjct: 283 INQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDL 342
Query: 324 WARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIESHY 383
RGID+Q +++VIN+D P E Y+HRIGRSGRFG G+AIN I +R L +IE
Sbjct: 343 LTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQEL 402
Query: 384 RIKIKPTPANLEE 396
+I PA +++
Sbjct: 403 GTEIAAIPATIDK 415
>At2g45810 [A] KOG0326 ATP-dependent RNA helicase
Length = 528
Score = 280 bits (717), Expect = 2e-75
Identities = 145/372 (38%), Positives = 232/372 (61%), Gaps = 4/372 (1%)
Query: 25 FESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQA 84
FE LK DLLRGIY GFE P G D++A+A++GTGKT F I L+
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEK 215
Query: 85 IDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQV 144
ID ++ +QA++L PTRELA Q+ V L YL + TGG +L+ DI ++ + +
Sbjct: 216 IDPENNVIQAVILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRLYQPVHL 275
Query: 145 VSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVVVV 204
+ GTPGR+LD+ K+ V +++C +LV+DEAD+LL ++ F+ I ++ LP + Q+++
Sbjct: 276 LVGTPGRILDLAKKGVCVLKDCAMLVMDEADKLL--SVEFQPSIEELIQFLPESRQILMF 333
Query: 205 SATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLTI 264
SAT + +++ P I+ D+++L + QYY VE+ + K L L+ L I
Sbjct: 334 SATFPVTVKSFKDRYLKKPY-IINLMDQLTLMGVTQYYAFVEERQ-KVHCLNTLFSKLQI 391
Query: 265 TQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVW 324
Q +IFCN+ +V+ L++K+T+ +S +H M Q+ R++V +DFR+G R L+ TD++
Sbjct: 392 NQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHDFRNGACRNLVCTDLF 451
Query: 325 ARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIESHYR 384
RGID+Q +++VIN+D P E+Y+HR+GRSGRFG G+A+N +T E+R K+ + E
Sbjct: 452 TRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQTEQELG 511
Query: 385 IKIKPTPANLEE 396
+IKP P+ +++
Sbjct: 512 TEIKPIPSLIDK 523
>At3g61240 [A] KOG0326 ATP-dependent RNA helicase
Length = 498
Score = 279 bits (713), Expect = 6e-75
Identities = 144/372 (38%), Positives = 229/372 (60%), Gaps = 4/372 (1%)
Query: 25 FESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQA 84
FE LK DLL+GIY GFE P G D++A+A++GTGKT F I +L+
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 85 IDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQV 144
ID + +QA++L PTRELA Q+ V L YLN+ TGG +L+ DI ++ + +
Sbjct: 186 IDPNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHL 245
Query: 145 VSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVVVV 204
+ GTPGR+LD+ K+ V +++C +LV+DEAD+LL F+ + ++ LP Q ++
Sbjct: 246 LVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAE--FQPSLEELIQFLPQNRQFLMF 303
Query: 205 SATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLTI 264
SAT + + + P I + D+++L + QYY VE+ + K L L+ L I
Sbjct: 304 SATFPVTVKAFKDRHLRKPYVINLM-DQLTLMGVTQYYAFVEERQ-KVHCLNTLFSKLQI 361
Query: 265 TQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVW 324
Q +IFCN+ +V+ L++K+T+ +S +H M Q+ R++V ++FR+G R L+ TD++
Sbjct: 362 NQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLF 421
Query: 325 ARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIESHYR 384
RGID+Q +++VIN+D P E+Y+HR+GRSGRFG G+A+N +T E+R K+ + E
Sbjct: 422 TRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQTEQELG 481
Query: 385 IKIKPTPANLEE 396
+IKP P+N+++
Sbjct: 482 TEIKPIPSNIDQ 493
>7297629 [A] KOG0326 ATP-dependent RNA helicase
Length = 458
Score = 275 bits (704), Expect = 7e-74
Identities = 146/367 (39%), Positives = 226/367 (60%), Gaps = 4/367 (1%)
Query: 25 FESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQA 84
FE LK +LL GI+ G+E P GKDV+A+A++GTGKT + I +L+
Sbjct: 59 FEEFCLKRELLMGIFEKGWERPSPIQEAAIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 118
Query: 85 IDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQV 144
ID +QALV+ PTRELA Q+ + L +L++ TGG L+ DI ++ + Q+
Sbjct: 119 IDPTKDYIQALVMVPTRELALQTSQICIELAKHLDIRVMVTTGGTILKDDILRIYQKVQL 178
Query: 145 VSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVVVV 204
+ TPGR+LD++ ++V ++ +C+ILVLDEAD+LL +L F+ + + KLP Q+++
Sbjct: 179 IIATPGRILDLMDKKVADMSHCRILVLDEADKLL--SLDFQGMLDHVILKLPKDPQILLF 236
Query: 205 SATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLTI 264
SAT + +K + +P +I + +E++L + QYY V++ + K L L+ L I
Sbjct: 237 SATFPLTVKNFMEKHLREPYEINLM-EELTLKGVTQYYAFVQERQ-KVHCLNTLFSKLQI 294
Query: 265 TQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVW 324
Q +IFCN+ ++V+ L++K+T+ + +H M Q R++V +DFR G R L+ +D++
Sbjct: 295 NQSIIFCNSTQRVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVCSDLF 354
Query: 325 ARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIESHYR 384
RGIDVQ +++VIN+D P E Y+HRIGRSGRFG G+AIN IT E+R L IE
Sbjct: 355 TRGIDVQAVNVVINFDFPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFDLHRIEKELG 414
Query: 385 IKIKPTP 391
+IKP P
Sbjct: 415 TEIKPIP 421
>Hs4758140 [A] KOG0326 ATP-dependent RNA helicase
Length = 472
Score = 270 bits (691), Expect = 2e-72
Identities = 146/373 (39%), Positives = 227/373 (60%), Gaps = 5/373 (1%)
Query: 25 FESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQA 84
FE LK +LL GI+ G+E P G+D++A+A++GTGK+ + I LL+
Sbjct: 87 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 146
Query: 85 IDSKSKELQALVLSPTRELASQSESVISNLGDYLN-VTAHACTGGKALQQDIKKVSKNCQ 143
+D K +QA+V+ PTRELA Q + + ++ A TGG L+ DI ++
Sbjct: 147 LDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVH 206
Query: 144 VVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVVV 203
VV TPGR+LD+IK+ V V + +++VLDEAD+LL + F Q + DI LP Q+++
Sbjct: 207 VVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQD--FVQIMEDIILTLPKNRQILL 264
Query: 204 VSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLT 263
SAT + + + P +I + +E++L + QYY V + + K L L+ L
Sbjct: 265 YSATFPLSVQKFMNSHLQKPYEINLM-EELTLKGVTQYYAYVTERQ-KVHCLNTLFSRLQ 322
Query: 264 ITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDV 323
I Q +IFCN+ ++V+ L++K++Q +S +H M+QE R++V +DFR+G R L+ TD+
Sbjct: 323 INQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDL 382
Query: 324 WARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIESHY 383
+ RGID+Q +++VIN+D P E Y+HRIGRSGRFG G+AIN IT ++R LK IE
Sbjct: 383 FTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQL 442
Query: 384 RIKIKPTPANLEE 396
+IKP P+N+++
Sbjct: 443 GTEIKPIPSNIDK 455
>SPBC776.09 [A] KOG0326 ATP-dependent RNA helicase
Length = 485
Score = 269 bits (687), Expect = 6e-72
Identities = 144/371 (38%), Positives = 221/371 (58%), Gaps = 4/371 (1%)
Query: 25 FESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQA 84
FE LK +LL GI+ GFE P G+D++A+A++GTGKTA F I L+
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 85 IDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQV 144
+D+K ++Q L+L PTRELA Q+ V LG ++NV TGG L+ DI +++ +
Sbjct: 106 VDTKKSKIQTLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDTVHI 165
Query: 145 VSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVVVV 204
V GTPGRVLD+ + V + C V+DEAD+LL F I + + P Q+ +
Sbjct: 166 VVGTPGRVLDLAGKGVADFSECTTFVMDEADKLLSPE--FTPIIEQLLSYFPKNRQISLY 223
Query: 205 SATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLTI 264
SAT + K ++ P +I + DE++L + QYY V++ + K L L+ L I
Sbjct: 224 SATFPLIVKNFMDKHLNKPYEINLM-DELTLRGVTQYYAFVDESQ-KVHCLNTLFSKLQI 281
Query: 265 TQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVW 324
Q +IFCN+ +V+ L++K+T+ +S H M Q R++V ++FR+G R L+ +D+
Sbjct: 282 NQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQSHRNRVFHNFRNGVCRNLVCSDLL 341
Query: 325 ARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIESHYR 384
RGID+Q +++VIN+D P N E Y+HRIGRSGRFG +G+AI+FI+ +R L IE+
Sbjct: 342 TRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHRGLAISFISWADRFNLYRIENELG 401
Query: 385 IKIKPTPANLE 395
+I+P P +++
Sbjct: 402 TEIQPIPPSID 412
>CE00839 [A] KOG0326 ATP-dependent RNA helicase
Length = 430
Score = 269 bits (687), Expect = 6e-72
Identities = 145/372 (38%), Positives = 224/372 (59%), Gaps = 6/372 (1%)
Query: 25 FESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQA 84
FE L DLL GI+ G+E P G+D++A+A++GTGKT + I +++
Sbjct: 45 FEDFCLGRDLLMGIFEKGWEKPSPIQEASIGVALTGQDILARAKNGTGKTGAYCIPVIEK 104
Query: 85 IDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQV 144
I K +QA+V+ PTRELA Q+ + L ++ + TGG L+ DI +++ +
Sbjct: 105 IQPALKAIQAMVIVPTRELALQTSQICVELSKHIQLKVMVTTGGTDLRDDIMRLNGTVHL 164
Query: 145 VSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYD-IFTKLPPTIQVVV 203
V TPGR+LD++++ V + +CK LVLDEAD+LL + Q I D + LP QV++
Sbjct: 165 VIATPGRILDLMEKGVAKMEHCKTLVLDEADKLLSQDF---QGILDRLINFLPKERQVML 221
Query: 204 VSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLT 263
SAT + +K M P +I + +E++L + QYY V++++ K L L+ L
Sbjct: 222 YSATFPNTVTSFMQKHMHKPYEINLM-EELTLLGVTQYYAFVQEKQ-KVHCLNTLFRKLQ 279
Query: 264 ITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDV 323
I Q +IFCN+ ++V+ L++K+T+ +S +H M Q R++V +DFR G R L+ +D+
Sbjct: 280 INQSIIFCNSTQRVELLAKKITEIGYSCYYIHSKMAQNHRNRVFHDFRQGNCRNLVCSDL 339
Query: 324 WARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIESHY 383
RGID+Q +++VIN+D P N E Y+HRIGRSGRFG GVAIN IT E+R L+ IE
Sbjct: 340 LTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGVAINLITYEDRHTLRRIEQEL 399
Query: 384 RIKIKPTPANLE 395
R +I+P P ++
Sbjct: 400 RTRIEPIPKTVD 411
>Hs6005743 [A] KOG0332 ATP-dependent RNA helicase
Length = 479
Score = 263 bits (671), Expect = 4e-70
Identities = 154/378 (40%), Positives = 229/378 (59%), Gaps = 19/378 (5%)
Query: 24 TFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXG--KDVIAQAQSGTGKTATFTIGL 81
+FE + LKP LL+G+Y GF P +++IAQ+QSGTGKTA F + +
Sbjct: 93 SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 152
Query: 82 LQAIDSKSKELQALVLSPTRELASQSESVISNLGDYLNVT--AHACTGGKALQQDIKKVS 139
L ++ +K Q L LSPT ELA Q+ VI +G + A+A G K + +K+S
Sbjct: 153 LSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG--QKIS 210
Query: 140 KNCQVVSGTPGRVLDMI-KRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPT 198
+ Q+V GTPG VLD K + ++ + K+ VLDEAD ++ T G + Q I LP
Sbjct: 211 E--QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIA-TQGHQDQSIRIQRMLPRN 267
Query: 199 IQVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDL 258
Q+++ SAT + + +K + DP I +KR+E +LD IKQYYV + KF LC+L
Sbjct: 268 CQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNL 327
Query: 259 YDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVL 318
Y ++TI Q +IFC+TRK WL+ +L++ V+ + G+M E+R V+ FR GK +VL
Sbjct: 328 YGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVL 387
Query: 319 ISTDVWARGIDVQQISLVINYDI-------PDNLENYIHRIGRSGRFGRKGVAINFI-TK 370
++T+V ARGIDV+Q+S+VIN+D+ PDN E Y+HRIGR+GRFG++G+A+N + +K
Sbjct: 388 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDN-ETYLHRIGRTGRFGKRGLAVNMVDSK 446
Query: 371 EERPKLKEIESHYRIKIK 388
L I+ H+ KI+
Sbjct: 447 HSMNILNRIQEHFNKKIE 464
>Hs8922886 [A] KOG0332 ATP-dependent RNA helicase
Length = 478
Score = 261 bits (668), Expect = 1e-69
Identities = 153/378 (40%), Positives = 228/378 (59%), Gaps = 19/378 (5%)
Query: 24 TFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXG--KDVIAQAQSGTGKTATFTIGL 81
+FE + LKP LL+G+Y GF P +++IAQ+QSGTGKTA F + +
Sbjct: 92 SFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAM 151
Query: 82 LQAIDSKSKELQALVLSPTRELASQSESVISNLGDYLNVT--AHACTGGKALQQDIKKVS 139
L ++ + Q L LSPT ELA Q+ VI +G + A+A G K + +K+S
Sbjct: 152 LSRVEPSDRYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG--QKIS 209
Query: 140 KNCQVVSGTPGRVLDMI-KRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPT 198
+ Q+V GTPG VLD K + ++ + K+ VLDEAD ++ T G + Q I LP
Sbjct: 210 E--QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIA-TQGHQDQSIRIQRMLPRN 266
Query: 199 IQVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDL 258
Q+++ SAT + + +K + DP I +KR+E +LD IKQYYV + KF LC+L
Sbjct: 267 CQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNL 326
Query: 259 YDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVL 318
Y ++TI Q +IFC+TRK WL+ +L++ V+ + G+M E+R V+ FR GK +VL
Sbjct: 327 YGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVL 386
Query: 319 ISTDVWARGIDVQQISLVINYDI-------PDNLENYIHRIGRSGRFGRKGVAINFI-TK 370
++T+V ARGIDV+Q+S+VIN+D+ PDN E Y+HRIGR+GRFG++G+A+N + +K
Sbjct: 387 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDN-ETYLHRIGRTGRFGKRGLAVNMVDSK 445
Query: 371 EERPKLKEIESHYRIKIK 388
L I+ H+ KI+
Sbjct: 446 HSMNILNRIQEHFNKKIE 463
>At4g00660 [A] KOG0326 ATP-dependent RNA helicase
Length = 499
Score = 261 bits (667), Expect = 1e-69
Identities = 140/373 (37%), Positives = 227/373 (60%), Gaps = 12/373 (3%)
Query: 25 FESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQA 84
FE LK +LL GIY GFE P G+D++A+A++GTGKTA F I +L+
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 85 IDSKSKELQA-LVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQ 143
ID + +Q VL T ++ + LG +L + TGG +L+ DI ++ +
Sbjct: 193 IDQDNNVIQGNCVLDHTSQVCKE-------LGKHLKIQVMVTTGGTSLKDDIMRLYQPVH 245
Query: 144 VVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVVV 203
++ GTPGR+LD+ K+ V +++C +LV+DEAD+LL + F+ + + + LP + Q+++
Sbjct: 246 LLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQE--FQPSVEHLISFLPESRQILM 303
Query: 204 VSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLT 263
SAT + + +F+++P I + DE++L I Q+Y VE+ + K L L+ L
Sbjct: 304 FSATFPVTVKDFKDRFLTNPYVINLM-DELTLKGITQFYAFVEERQ-KIHCLNTLFSKLQ 361
Query: 264 ITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDV 323
I Q +IFCN+ +V+ L++K+T+ +S +H M Q+ R++V +DFR+G R L+ TD+
Sbjct: 362 INQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL 421
Query: 324 WARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIESHY 383
+ RGID+Q +++VIN+D P N E Y+HR+GRSGRFG G+A+N IT E+R L IE
Sbjct: 422 FTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQEL 481
Query: 384 RIKIKPTPANLEE 396
+IK P ++++
Sbjct: 482 GTEIKQIPPHIDQ 494
>SPBC12C2.06 [A] KOG0332 ATP-dependent RNA helicase
Length = 503
Score = 258 bits (658), Expect = 1e-68
Identities = 144/385 (37%), Positives = 237/385 (61%), Gaps = 17/385 (4%)
Query: 24 TFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXG--KDVIAQAQSGTGKTATFTIGL 81
+FE + LKP+LL+GIY F+ P +++I Q+QSGTGKTA F + +
Sbjct: 115 SFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTM 174
Query: 82 LQAIDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSK- 140
L +D+ + QA+ L+P+RELA Q V++ +G Y V ++ + K +K
Sbjct: 175 LSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKT-----AFGIKDSVPKGAKI 229
Query: 141 NCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQ 200
+ Q+V GTPG V+D++KR+ L+ R+ K+ VLDEAD +L + G Q I LP Q
Sbjct: 230 DAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQ-GLGDQSMRIKHLLPRNTQ 288
Query: 201 VVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYD 260
+V+ SAT S+ + + ++F + +I +K +E+S++ IKQ Y+D + EE K++ L +LY
Sbjct: 289 IVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYG 348
Query: 261 SLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLIS 320
LTI Q +IFC + + ++R++T +V+ + G+++ +RD +M+ FR G ++VL++
Sbjct: 349 LLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVT 408
Query: 321 TDVWARGIDVQQISLVINYDIP------DNLENYIHRIGRSGRFGRKGVAINFI-TKEER 373
T+V ARGIDV Q++LV+NYD+P + + Y+HRIGR+GRFGR GV+INF+ K+
Sbjct: 409 TNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSW 468
Query: 374 PKLKEIESHYRIKIKPTPA-NLEEL 397
++ I+ +++ I P + EEL
Sbjct: 469 EEMNAIQEYFQRPITRVPTDDYEEL 493
>YOR046c [A] KOG0332 ATP-dependent RNA helicase
Length = 482
Score = 251 bits (641), Expect = 1e-66
Identities = 136/353 (38%), Positives = 216/353 (60%), Gaps = 13/353 (3%)
Query: 24 TFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXG--KDVIAQAQSGTGKTATFTIGL 81
+F+ + L P+LL+GIY F+ P +++IAQ+QSGTGKTA F++ +
Sbjct: 93 SFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTM 152
Query: 82 LQAIDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKN 141
L ++ + QA+ L+P+RELA Q+ V+ +G + +T+ K N
Sbjct: 153 LTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFE----KNKQIN 208
Query: 142 CQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQV 201
QV+ GTPG VLD+++R+++ ++ KI VLDEAD +L + G Q + LP Q+
Sbjct: 209 AQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQ-GLGDQCIRVKRFLPKDTQL 267
Query: 202 VVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDS 261
V+ SAT + + + KK + + + ++ +E+++D IKQ Y+D + E KFD L +LY
Sbjct: 268 VLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGL 327
Query: 262 LTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLIST 321
+TI +IF T+K + L KL VS +HGD++ +ERD++++DFR G+++VLI+T
Sbjct: 328 MTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITT 387
Query: 322 DVWARGIDVQQISLVINYDIPD------NLENYIHRIGRSGRFGRKGVAINFI 368
+V ARGID+ +S+V+NYD+P + YIHRIGR+GRFGRKGVAI+F+
Sbjct: 388 NVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFV 440
>SPAC17G6.14c [A] KOG0329 ATP-dependent RNA helicase
Length = 434
Score = 250 bits (638), Expect = 3e-66
Identities = 146/380 (38%), Positives = 227/380 (59%), Gaps = 8/380 (2%)
Query: 22 SATFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGL 81
S F LKP+LLR I GFE+P G DV+ QA+SG GKTA F +
Sbjct: 50 STGFRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLST 109
Query: 82 LQAIDSKSKELQALVLSPTRELASQSESVISNLGDYL-NVTAHACTGGKALQQDI---KK 137
LQ I+ E+ LVL TRELA Q ++ + YL +V GG ++QD+ K
Sbjct: 110 LQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKD 169
Query: 138 VSKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPP 197
SK+ +V TPGR+ +++ ++L V + K VLDE D+LL E++ ++ I ++F PP
Sbjct: 170 KSKSPHIVVATPGRLNALVREKILKVNSVKHFVLDECDKLL-ESVDMRRDIQEVFRATPP 228
Query: 198 TIQVVVVSATMSKDILEITKKFMSDPVKILVKRD-EISLDVIKQYYVDVEKEEWKFDTLC 256
QV++ SAT+S +I I KKFM +P++I V + +++L ++Q+YV +E E+ K +
Sbjct: 229 QKQVMMFSATLSNEIRPICKKFMQNPLEIYVDDETKLTLHGLQQHYVKLE-EKAKNRKIN 287
Query: 257 DLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKAR 316
DL DSL Q VIF + + + L R L + NF +HG + QEER + F+ R
Sbjct: 288 DLLDSLEFNQVVIFVKSVSRANELDRLLRECNFPSICIHGGLPQEERIKRYKAFKDFDKR 347
Query: 317 VLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPK- 375
+ ++TDV+ RGID++++++VINYD+PD+ ++Y+HR+GR+GRFG KG+AI F + EE +
Sbjct: 348 ICVATDVFGRGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKGLAITFSSSEEDSQI 407
Query: 376 LKEIESHYRIKIKPTPANLE 395
L +I+ + + I P ++
Sbjct: 408 LDKIQERFEVNITELPDEID 427
>Hs4758112 [A] KOG0329 ATP-dependent RNA helicase
Length = 428
Score = 245 bits (625), Expect = 1e-64
Identities = 134/378 (35%), Positives = 224/378 (58%), Gaps = 6/378 (1%)
Query: 22 SATFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGL 81
S+ F LKP+LLR I GFE+P G DV+ QA+SG GKTA F +
Sbjct: 44 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT 103
Query: 82 LQAIDSKSKELQALVLSPTRELASQSESVISNLGDYL-NVTAHACTGGKALQQDIKKVSK 140
LQ ++ + ++ LV+ TRELA Q Y+ NV GG ++++D + + K
Sbjct: 104 LQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK 163
Query: 141 NC-QVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTI 199
NC +V GTPGR+L + + + LN+++ K +LDE D++L E L ++ + +IF P
Sbjct: 164 NCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKML-EQLDMRRDVQEIFRMTPHEK 222
Query: 200 QVVVVSATMSKDILEITKKFMSDPVKILVKRD-EISLDVIKQYYVDVEKEEWKFDTLCDL 258
QV++ SAT+SK+I + +KFM DP++I V + +++L ++QYYV ++ E K L DL
Sbjct: 223 QVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNE-KNRKLFDL 281
Query: 259 YDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVL 318
D L Q VIF + ++ L++ L + NF ++H M QEER F+ + R+L
Sbjct: 282 LDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRIL 341
Query: 319 ISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPK-LK 377
++T+++ RG+D++++++ NYD+P++ + Y+HR+ R+GRFG KG+AI F++ E K L
Sbjct: 342 VATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILN 401
Query: 378 EIESHYRIKIKPTPANLE 395
+++ + + I P ++
Sbjct: 402 DVQDRFEVNISELPDEID 419
>Hs21040371 [A] KOG0329 ATP-dependent RNA helicase
Length = 427
Score = 244 bits (623), Expect = 2e-64
Identities = 133/378 (35%), Positives = 224/378 (59%), Gaps = 6/378 (1%)
Query: 22 SATFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGL 81
S+ F LKP+LLR I GFE+P G DV+ QA+SG GKTA F +
Sbjct: 43 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT 102
Query: 82 LQAIDSKSKELQALVLSPTRELASQSESVISNLGDYL-NVTAHACTGGKALQQDIKKVSK 140
LQ I+ + ++ LV+ TRELA Q Y+ +V GG ++++D + + K
Sbjct: 103 LQQIEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKK 162
Query: 141 NC-QVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTI 199
NC VV GTPGR+L +++ + +++N K VLDE D++L E L ++ + +IF P
Sbjct: 163 NCPHVVVGTPGRILALVRNRSFSLKNVKHFVLDECDKML-EQLDMRRDVQEIFRLTPHEK 221
Query: 200 QVVVVSATMSKDILEITKKFMSDPVKILVKRD-EISLDVIKQYYVDVEKEEWKFDTLCDL 258
Q ++ SAT+SKDI + +KFM DP+++ V + +++L ++QYYV ++ E K L DL
Sbjct: 222 QCMMFSATLSKDIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSE-KNRKLFDL 280
Query: 259 YDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVL 318
D L Q +IF + ++ L++ L + NF ++H M QEER F+ + R+L
Sbjct: 281 LDVLEFNQVIIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRIL 340
Query: 319 ISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPK-LK 377
++T+++ RG+D++++++V NYD+P++ + Y+HR+ R+GRFG KG+AI F++ E K L
Sbjct: 341 VATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILN 400
Query: 378 EIESHYRIKIKPTPANLE 395
+++ + + + P ++
Sbjct: 401 DVQDRFEVNVAELPEEID 418
>ECU09g1200 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 425
Score = 243 bits (621), Expect = 3e-64
Identities = 142/389 (36%), Positives = 217/389 (55%), Gaps = 25/389 (6%)
Query: 24 TFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQ 83
T+E LK DLL+GIY GFE P G+D+ AQAQSGTGKT F + LQ
Sbjct: 39 TWEDYGLKEDLLKGIYSIGFETPSFIQKAAIQPIIDGRDIRAQAQSGTGKTGAFAVAALQ 98
Query: 84 AIDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQ 143
D Q LVL+ TRE+A+Q+ + +LG ++ +GG + D + K
Sbjct: 99 ICDMSQDVTQILVLASTREIAAQNAARFEDLGCFMGARVALLSGGSPIAADKVALEKKPH 158
Query: 144 VVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKL--PPTIQV 201
+V GTPGRV MI L++ N K+ V+DEADE+L GF++Q+ IF ++ +Q+
Sbjct: 159 IVVGTPGRVEHMININELSMDNIKLFVIDEADEML--KAGFQEQVKSIFRRITNKDEVQI 216
Query: 202 VVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEE-----------W 250
+ SAT ++ L ++++ + +PV I ++ ++ +L I+QY++D+ KE
Sbjct: 217 AMFSATYDEEELRVSEEILINPVIIDLRYNDQTLKGIRQYFIDLRKEPPFRKGREDYLLP 276
Query: 251 KFDTLCDLYDSLTITQCVIFCNTRKKV----DWLSRKLTQTNFSVSSMHGDMKQEERDQV 306
K TL D++ + Q ++F N+++ DWL R + + ++ Q ER++
Sbjct: 277 KLVTLYDIFRKQRLGQSIVFINSKEDARIVYDWLIRH----EWECELISAELTQAERERT 332
Query: 307 MNDFRSGKARVLISTDVWARGIDVQQISLVINYDIP--DNLENYIHRIGRSGRFGRKGVA 364
+N FR G R LIS+ + +RGID+Q +S+V D+P + YIHRIGRSGR+GRKG+A
Sbjct: 333 LNRFRGGTGRCLISSGLLSRGIDIQNLSVVFCLDVPSFERKSTYIHRIGRSGRYGRKGIA 392
Query: 365 INFITKEERPKLKEIESHYRIKIKPTPAN 393
IN + + E LK IE Y IK PA+
Sbjct: 393 INIVYEHELKNLKAIERFYNTTIKELPAD 421
>At5g11170 [A] KOG0329 ATP-dependent RNA helicase
Length = 435
Score = 243 bits (619), Expect = 5e-64
Identities = 142/378 (37%), Positives = 221/378 (57%), Gaps = 6/378 (1%)
Query: 22 SATFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGL 81
S+ F LKP+LLR I GFE+P G DVI QA+SG GKTA F +
Sbjct: 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLST 104
Query: 82 LQAIDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKN 141
LQ I+ ++ ALVL TRELA Q + YL T + G + K + KN
Sbjct: 105 LQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKN 164
Query: 142 -C-QVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTI 199
C +V GTPGRVL + + + L+++N + +LDE D++L E+L ++ + +IF P
Sbjct: 165 ECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKML-ESLDMRRDVQEIFKMTPHDK 223
Query: 200 QVVVVSATMSKDILEITKKFMSDPVKILVKRD-EISLDVIKQYYVDVEKEEWKFDTLCDL 258
QV++ SAT+SK+I + KKFM DP++I V + +++L + Q+Y+ + + E K L DL
Sbjct: 224 QVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEME-KTRKLNDL 282
Query: 259 YDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVL 318
D+L Q VIF + + L++ L + NF +H M QEER F+ G R+L
Sbjct: 283 LDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRIL 342
Query: 319 ISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFI-TKEERPKLK 377
++TD+ RGID++++++VINYD+PD+ + Y+HR+GR+GRFG KG+AI F+ + + L
Sbjct: 343 VATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLN 402
Query: 378 EIESHYRIKIKPTPANLE 395
+++ + + IK P ++
Sbjct: 403 QVQERFEVDIKELPEQID 420
>At5g11200 [A] KOG0329 ATP-dependent RNA helicase
Length = 427
Score = 242 bits (618), Expect = 6e-64
Identities = 142/378 (37%), Positives = 221/378 (57%), Gaps = 6/378 (1%)
Query: 22 SATFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGL 81
S+ F LKP+LLR I GFE+P G DVI QA+SG GKTA F +
Sbjct: 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLST 104
Query: 82 LQAIDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKN 141
LQ I+ ++ ALVL TRELA Q + YL T + G + K + KN
Sbjct: 105 LQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKN 164
Query: 142 -C-QVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTI 199
C +V GTPGRVL + + + L+++N + +LDE D++L E+L ++ + +IF P
Sbjct: 165 ECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKML-ESLDMRRDVQEIFKMTPHDK 223
Query: 200 QVVVVSATMSKDILEITKKFMSDPVKILVKRD-EISLDVIKQYYVDVEKEEWKFDTLCDL 258
QV++ SAT+SK+I + KKFM DP++I V + +++L + Q+Y+ + + E K L DL
Sbjct: 224 QVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEME-KNRKLNDL 282
Query: 259 YDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVL 318
D+L Q VIF + + L++ L + NF +H M QEER F+ G R+L
Sbjct: 283 LDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRIL 342
Query: 319 ISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFI-TKEERPKLK 377
++TD+ RGID++++++VINYD+PD+ + Y+HR+GR+GRFG KG+AI F+ + + L
Sbjct: 343 VATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLN 402
Query: 378 EIESHYRIKIKPTPANLE 395
+++ + + IK P ++
Sbjct: 403 QVQERFEVDIKELPEQID 420
>Hs20548087 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 344
Score = 242 bits (617), Expect = 8e-64
Identities = 127/280 (45%), Positives = 179/280 (63%), Gaps = 14/280 (5%)
Query: 24 TFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQ 83
+F+ MNL LL GIY YG E P G VI QAQSGTGK ATF+I +L
Sbjct: 78 SFDDMNLLESLLHGIYAYGSEKPSAIQQRAILPCIRGYVVIVQAQSGTGKMATFSISILH 137
Query: 84 AIDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNC- 142
I+ K QAL+ + V+ LGD+++ + H C GG + +++K+
Sbjct: 138 QIELDVKATQALI-----------QKVVIALGDHMDASCHTCIGGTNVHAEVQKLQMEAP 186
Query: 143 QVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVV 202
++ GTPG V DM+ + L+ + K+ VLD+ DE+L GFK QIY IF +L QVV
Sbjct: 187 HIIVGTPGHVFDMLNWRYLSPKYIKMFVLDKTDEMLSH--GFKDQIYGIFQELNSNTQVV 244
Query: 203 VVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSL 262
+ SATM D+LE+TKKFM + + ILVK++E++L+ I Q+Y+++E+EEWK DTL DLY++L
Sbjct: 245 LPSATMPSDVLEVTKKFMREHIWILVKKEELTLEGICQFYINMEREEWKLDTLGDLYETL 304
Query: 263 TITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEE 302
TI Q VIF NTR+K DWL++K+ +F+VS+MHGDM Q+E
Sbjct: 305 TIAQAVIFLNTRRKADWLTKKMHAQDFTVSAMHGDMDQKE 344
>7296990 [A] KOG0329 ATP-dependent RNA helicase
Length = 424
Score = 239 bits (611), Expect = 4e-63
Identities = 136/379 (35%), Positives = 222/379 (57%), Gaps = 7/379 (1%)
Query: 22 SATFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGL 81
S+ F LKP++LR I GFE+P G D++ QA+SG GKTA F +
Sbjct: 40 SSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLAT 99
Query: 82 LQAID-SKSKELQALVLSPTRELASQSESVISNLGDYL-NVTAHACTGGKALQQDIKKVS 139
LQ ++ S + LV+ TRELA Q Y+ V GG A+Q+D + +
Sbjct: 100 LQQLEPSDNNTCHVLVMCHTRELAFQISKEYERFSKYMPTVKVAVFFGGMAIQKDEETLK 159
Query: 140 KNC-QVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPT 198
+V GTPGR+L +I+ + LN++ K VLDE D++L E L ++ + +IF P
Sbjct: 160 SGTPHIVVGTPGRILALIRNKKLNLKLLKHFVLDECDKML-EQLDMRRDVQEIFRSTPHG 218
Query: 199 IQVVVVSATMSKDILEITKKFMSDPVKILVKRD-EISLDVIKQYYVDVEKEEWKFDTLCD 257
QV++ SAT+SKDI + KKFM DP+++ V + +++L ++Q+YV++++ E K L +
Sbjct: 219 KQVMMFSATLSKDIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVNLKENE-KNKKLFE 277
Query: 258 LYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARV 317
L D L Q VIF + ++ LS+ LT+ NF +H M QEER F+ + R+
Sbjct: 278 LLDVLEFNQVVIFVKSVQRCVALSQLLTEQNFPAIGIHRGMTQEERLNRYQQFKDFQKRI 337
Query: 318 LISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPK-L 376
L++T+++ RG+D++++++V NYD+P++ + Y+HR+ R+GRFG KG+AI F++ E K L
Sbjct: 338 LVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKIL 397
Query: 377 KEIESHYRIKIKPTPANLE 395
E++ + + I P ++
Sbjct: 398 NEVQDRFDVNISELPEEID 416
>Hs21327697 [A] KOG0332 ATP-dependent RNA helicase
Length = 369
Score = 239 bits (609), Expect = 7e-63
Identities = 129/338 (38%), Positives = 209/338 (61%), Gaps = 16/338 (4%)
Query: 61 KDVIAQAQSGTGKTATFTIGLLQAIDSKSKELQALVLSPTRELASQSESVISNLGDY-LN 119
+++IAQ+QSGTGKTA F + +L +++ Q L L+PT ELA Q+ V+ +G + ++
Sbjct: 23 QNLIAQSQSGTGKTAAFVLAMLSRVNALELFPQCLCLAPTYELALQTGRVVEQMGKFCVD 82
Query: 120 VTAHACTGGKALQQ--DIKKVSKNCQVVSGTPGRVLDM-IKRQVLNVRNCKILVLDEADE 176
V G + + DI K Q++ GTPG VLD K +++++ ++ VLDEAD
Sbjct: 83 VQVMYAIRGNRIPRGTDITK-----QIIIGTPGTVLDWCFKLKLIDLTKIRVFVLDEADV 137
Query: 177 LLGETLGFKQQIYDIFTKLPPTIQVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLD 236
++ +T GF I LP Q+++ SAT + ++ + DP I ++++E++L+
Sbjct: 138 MI-DTQGFSDHSIRIQRALPSECQMLLFSATFEDSVWHFAERIIPDPNVIKLRKEELTLN 196
Query: 237 VIKQYYVDVEKEEWKFDTLCDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHG 296
I+QYYV E + K+ LC++Y S+TI Q +IFC TR+ WL+ ++ Q VS + G
Sbjct: 197 NIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSG 256
Query: 297 DMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIP------DNLENYIH 350
++ E+R ++ FR GK +VLI+T+V ARGIDV+Q+++V+N+D+P + E Y+H
Sbjct: 257 ELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLH 316
Query: 351 RIGRSGRFGRKGVAINFITKEERPKLKEIESHYRIKIK 388
RIGR+GRFG+KG+A N I +E P L +I+ H+ IK
Sbjct: 317 RIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSSIK 354
>HsM7019399 [A] KOG0332 ATP-dependent RNA helicase
Length = 369
Score = 238 bits (607), Expect = 1e-62
Identities = 129/338 (38%), Positives = 208/338 (61%), Gaps = 16/338 (4%)
Query: 61 KDVIAQAQSGTGKTATFTIGLLQAIDSKSKELQALVLSPTRELASQSESVISNLGDY-LN 119
+++IAQ+QSGTGKTA F + +L +++ Q L L+PT ELA Q+ V+ +G + ++
Sbjct: 23 QNLIAQSQSGTGKTAAFVLAMLSRVNALELFPQCLCLAPTYELALQTGRVVEQMGKFCVD 82
Query: 120 VTAHACTGGKALQQ--DIKKVSKNCQVVSGTPGRVLDM-IKRQVLNVRNCKILVLDEADE 176
V G + + DI K Q++ GTPG VLD K +++++ ++ VLDEAD
Sbjct: 83 VQVMYAIRGNRIPRGTDITK-----QIIIGTPGTVLDWCFKLKLIDLTKIRVFVLDEADV 137
Query: 177 LLGETLGFKQQIYDIFTKLPPTIQVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLD 236
++ +T GF I LP Q+++ SAT + ++ + DP I ++++E++L+
Sbjct: 138 MI-DTQGFSDHSIRIQRALPSECQMLLFSATFEDSVWHFAERIIPDPNVIKLRKEELTLN 196
Query: 237 VIKQYYVDVEKEEWKFDTLCDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHG 296
I+QYYV E + K+ LC++Y S+TI Q +IFC TR+ WL+ ++ Q VS + G
Sbjct: 197 NIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSG 256
Query: 297 DMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIP------DNLENYIH 350
++ E+R + FR GK +VLI+T+V ARGIDV+Q+++V+N+D+P + E Y+H
Sbjct: 257 ELTVEQRASITQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLH 316
Query: 351 RIGRSGRFGRKGVAINFITKEERPKLKEIESHYRIKIK 388
RIGR+GRFG+KG+A N I +E P L +I+ H+ IK
Sbjct: 317 RIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSSIK 354
>ECU09g1640 [A] KOG0326 ATP-dependent RNA helicase
Length = 489
Score = 234 bits (597), Expect = 2e-61
Identities = 130/365 (35%), Positives = 216/365 (58%), Gaps = 4/365 (1%)
Query: 25 FESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQA 84
+ES+ L P LL+ I G+++P GK+++ ++++GTGKTA++ + +L
Sbjct: 110 WESLGLGPVLLKRIRDIGYDFPSPVQVASIPHVLGGKNLLVRSKNGTGKTASYIVPMLNM 169
Query: 85 IDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQV 144
I+S +Q ++L P RELA Q + + + V + GG ++Q DI +VS V
Sbjct: 170 INSSELSIQGIILVPIRELALQISRNVKRMSEGTGVISAPVVGGTSMQDDIIRVSNGVHV 229
Query: 145 VSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVVVV 204
+ GTPGR++D+++++V + ILV DEAD+LL T G + + + LP Q+++
Sbjct: 230 MVGTPGRIVDLVEKRVGTLSKRVILVFDEADKLLDVTFG--ETVTKLLDLLPREKQMLLY 287
Query: 205 SATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLTI 264
SAT + +++M +P+ I + + E++ +KQ+Y V+ E K L L L+I
Sbjct: 288 SATFPYFVTGFIRRYMKNPLCINLMK-ELAPVGVKQFYTYVKPSE-KLLCLKSLLLRLSI 345
Query: 265 TQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVW 324
QCVIFCN+ K V+ L+ K+T+ +H M QE+R+ V ++F GK ++L++TD+
Sbjct: 346 NQCVIFCNSIKTVELLAMKITEMGLPSYFIHSKMAQEDRNIVFHNFLKGKCKILVATDLI 405
Query: 325 ARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIESHYR 384
RG+D + VIN+DI + E+Y+HRIGR+GRFG GVAI+ +T EE+ L +IE+
Sbjct: 406 TRGVDAPNTNYVINFDISKSPESYLHRIGRAGRFGAPGVAISLVTTEEKEMLMDIEAKLG 465
Query: 385 IKIKP 389
+I P
Sbjct: 466 KEISP 470
>CE03025 [A] KOG0329 ATP-dependent RNA helicase
Length = 425
Score = 231 bits (590), Expect = 1e-60
Identities = 129/378 (34%), Positives = 219/378 (57%), Gaps = 6/378 (1%)
Query: 22 SATFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGL 81
S+ F LKP++LR I GFE+P G DV+ QA+SG GKTA F I
Sbjct: 40 SSGFRDFLLKPEILRAIGDCGFEHPSEVQHECIPQAILGMDVVCQAKSGMGKTAVFVITT 99
Query: 82 LQAIDSKSKELQALVLSPTRELASQSESVISNLGDYL-NVTAHACTGGKALQQDIKKVSK 140
LQ ++ E+ + + TRELA Q YL V GG A+++D ++++
Sbjct: 100 LQQLEPVDGEVSVVCMCHTRELAFQISKEYERFSKYLPGVKVAVFFGGMAIKKDEERLAN 159
Query: 141 NC-QVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTI 199
+C +V GTPGR+L + + L + K VLDE D+++G+ ++ + +I P
Sbjct: 160 DCPHIVVGTPGRMLALARSGKLKLDKVKYFVLDECDKMIGDA-DMRRDVQEIVKMTPQQK 218
Query: 200 QVVVVSATMSKDILEITKKFMSDPVKILVKRD-EISLDVIKQYYVDVEKEEWKFDTLCDL 258
QV++ SAT+ K++ + K+FM DP+++ V + +++L ++Q+YV +++ E K L +L
Sbjct: 219 QVMMFSATLPKELRTVCKRFMQDPMEVYVDDEAKLTLHGLQQHYVKLKEAE-KNRRLLNL 277
Query: 259 YDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVL 318
D+L Q VIF K+ + L + LT+ NF ++H M QEER F+ + R+L
Sbjct: 278 LDALEFNQVVIFVKAVKRCEALHQLLTEQNFPSIAIHRQMAQEERLSRYQAFKDFQKRIL 337
Query: 319 ISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPK-LK 377
++TD++ RG+D++++++V NYD+P++ ++Y+HR+ R+GRFG KG+AI F++ E K L
Sbjct: 338 VATDLFGRGMDIERVNIVFNYDMPEDSDSYLHRVARAGRFGTKGLAITFVSDENDAKTLN 397
Query: 378 EIESHYRIKIKPTPANLE 395
++ + I I P ++
Sbjct: 398 SVQDRFDISITELPEKID 415
>YDL084w [A] KOG0329 ATP-dependent RNA helicase
Length = 446
Score = 231 bits (589), Expect = 1e-60
Identities = 131/376 (34%), Positives = 217/376 (56%), Gaps = 8/376 (2%)
Query: 22 SATFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGL 81
S F+ LKP+L R I GFE+P G DV+ QA+SG GKTA F +
Sbjct: 61 STGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLST 120
Query: 82 LQAIDSKSKELQALVLSPTRELASQSESVISNLGDYL-NVTAHACTGGKALQQD---IKK 137
LQ +D E+ +V+ RELA Q + Y+ +V GG + +D +K
Sbjct: 121 LQQLDPVPGEVAVVVICNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTPISKDAELLKN 180
Query: 138 VSKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPP 197
+V TPGR+ +++ + +++ + K V+DE D++L E L ++ + +IF P
Sbjct: 181 KDTAPHIVVATPGRLKALVREKYIDLSHVKNFVIDECDKVL-EELDMRRDVQEIFRATPR 239
Query: 198 TIQVVVVSATMSKDILEITKKFMSDPVKILVKRD-EISLDVIKQYYVDVEKEEWKFDTLC 256
QV++ SAT+S++I I ++F+ +P++I V + +++L ++QYY+ +E+ E K L
Sbjct: 240 DKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLEERE-KNRKLA 298
Query: 257 DLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKAR 316
L D L Q +IF + + + L++ L +NF ++HG MKQEER F+ + R
Sbjct: 299 QLLDDLEFNQVIIFVKSTTRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKDFEKR 358
Query: 317 VLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFI-TKEERPK 375
+ +STDV+ RGID+++I+L INYD+ + + Y+HR+GR+GRFG KG+AI+F+ +KE+
Sbjct: 359 ICVSTDVFGRGIDIERINLAINYDLTNEADQYLHRVGRAGRFGTKGLAISFVSSKEDEEV 418
Query: 376 LKEIESHYRIKIKPTP 391
L +I+ + +KI P
Sbjct: 419 LAKIQERFDVKIAEFP 434
>ECU02g1520 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 425
Score = 223 bits (567), Expect = 5e-58
Identities = 133/357 (37%), Positives = 209/357 (58%), Gaps = 16/357 (4%)
Query: 21 VSATFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIG 80
V+ F M L +LL+ IY GFE P G +V+ Q++SGTGKT +T G
Sbjct: 49 VAEHFSDMGLSDELLKAIYNQGFEKPSLIQKSAIPHILRGHNVVVQSKSGTGKTIAYTCG 108
Query: 81 LLQAIDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSK 140
+L + Q +V++PTREL++Q VIS L L + + K S
Sbjct: 109 VL-GNTKIGERTQVMVVTPTRELSTQVTEVISGLAGPLGIKVFSALKNKITD------SI 161
Query: 141 NCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQ 200
+VV G+PG +L +++ LN + K++VLDEAD LL + + Q + I KL Q
Sbjct: 162 GEEVVVGSPGTILKLMELGKLNYKGVKMIVLDEADILLDKDM-MGTQTFRIL-KLISGAQ 219
Query: 201 VVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYD 260
++ SAT S+ + + + + D VK+ +R+ D IK +Y++ E E K L LY+
Sbjct: 220 MIFFSATFSEQVKQTIEFYAPDAVKMYEERNG-KPDEIKLFYIEAEGEN-KRRALKSLYE 277
Query: 261 SLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLIS 320
L+I+Q +IF +T+ V++L +KL SVS +HGD++ EER++ + DFRS K+++L++
Sbjct: 278 YLSISQMIIFVSTKATVNYLRKKLEDDLHSVSCLHGDLEIEEREKAVGDFRSSKSKILLT 337
Query: 321 TDVWARGIDVQQISLVINYDIP-----DNLENYIHRIGRSGRFGRKGVAINFITKEE 372
TDV++RG+D+ Q++L++NYD+P + + YIHRIGRSGRFGR G ++F+ EE
Sbjct: 338 TDVFSRGMDIPQVNLIVNYDLPIYRGVASTQTYIHRIGRSGRFGRTGFVVDFVRDEE 394
>At3g53110 [A] KOG0332 ATP-dependent RNA helicase
Length = 496
Score = 222 bits (566), Expect = 7e-58
Identities = 127/385 (32%), Positives = 216/385 (55%), Gaps = 19/385 (4%)
Query: 22 SATFESMNLKPDLLRGIYF-YGFEYPXXXXXXXXXXXXXG--KDVIAQAQSGTGKTATFT 78
++ FE +NL P+L++G+Y FE P K +IAQA +G+GKT F
Sbjct: 90 ASRFEDLNLSPELMKGLYVEMKFEKPSKIQAISLPMIMTPPHKHLIAQAHNGSGKTTCFV 149
Query: 79 IGLLQAIDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACT--GGKALQQDIK 136
+G+L +D +E QAL + PTRELA+Q+ V+ +G + +TA + +
Sbjct: 150 LGMLSRVDPTLREPQALCICPTRELANQNMEVLQKMGKFTGITAELAVPDSTRGAPAATR 209
Query: 137 KVSKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFT--- 193
+ VV GTPG + + + L + + KILV DEAD +L T GF+ I
Sbjct: 210 GAPVSAHVVIGTPGTLKKWMAFKRLGLNHLKILVFDEADHMLA-TDGFRDDSLKIMKDIG 268
Query: 194 KLPPTIQVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFD 253
++ P QV++ SAT ++ + + + + DP ++ VKR++++LD +KQY V KE+ K +
Sbjct: 269 RVNPNFQVLLFSATFNETVKDFVARTVKDPNQLFVKREDLALDSVKQYKVVCPKEQNKIE 328
Query: 254 TLCDLYDSL-TITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRS 312
+ D L I Q +IF T+ + + L + + V+S+HG++ + +RD+++ +F+
Sbjct: 329 VIKDQIMELGDIGQTIIFVKTKASAQKVHKALAEMGYDVTSVHGNLTESDRDKIVKEFKE 388
Query: 313 GKARVLISTDVWARGIDVQQISLVINYDIPDNLEN-------YIHRIGRSGRFGRKGVAI 365
+VLI+TDV ARG D Q+++LV+NY++P E Y+HR+GR+GRFGRKG
Sbjct: 389 CLTQVLIATDVIARGFDQQRVNLVVNYNLPTKYETGEPDYEVYLHRVGRAGRFGRKGAVF 448
Query: 366 NFITKE--ERPKLKEIESHYRIKIK 388
N + + ++ +++IE ++ +K
Sbjct: 449 NLLLDDGWDKEVMEKIEKYFEANVK 473
>CE18221 [A] KOG0332 ATP-dependent RNA helicase
Length = 613
Score = 221 bits (563), Expect = 1e-57
Identities = 137/402 (34%), Positives = 221/402 (54%), Gaps = 30/402 (7%)
Query: 23 ATFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXG--KDVIAQAQSGTGKTATFTIG 80
++F + LKP++L+ + F++P ++IAQAQSGTGKTA F +
Sbjct: 209 SSFRELRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVLT 268
Query: 81 LLQAIDSKSKELQALVLSPTRELASQSESVISNLGDYL-NVTAH-ACTGGKALQQDIKKV 138
+L ID Q + L+PT ELA Q V+ +G ++ N+ H A GG +K+
Sbjct: 269 MLCRIDVNLMCPQCICLAPTLELAKQIGEVVEKMGKFIDNLKIHYAIKGGNMAAMRGRKL 328
Query: 139 SKNCQVVSGTPGRVLDMIKR-QVLNVRNCKILVLDEADELLGETLGFKQ---QIYDIFTK 194
++ Q+V GTPG D +++ + ++ + LVLDEAD ++ GF IY++
Sbjct: 329 TE--QIVIGTPGITRDYLQKYKCIDPSKIRCLVLDEADVMIYHQ-GFTDISTTIYNMVED 385
Query: 195 LPPTIQVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDT 254
++Q ++ SAT + ++ K + + + +++KR+E +L IKQ+YV + K+
Sbjct: 386 ASDSVQSMLFSATYDEPVINFATKIIKNAIVVMLKREEQALPNIKQFYVQCACRDSKYAA 445
Query: 255 LCDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGK 314
+ +LY L + VIFC+T+ V WL + V +HGDM ER + F+ G
Sbjct: 446 IVNLYSGLAVASSVIFCHTKASVMWLYENMRARGHQVDVLHGDMTVVERADTIIHFKRGD 505
Query: 315 ARVLISTDVWARGIDVQQISLVINYDIP-----------------DNLENYIHRIGRSGR 357
+VLI+T+V+ARGIDV Q+S+VINYD+P + E Y+HRIGR+GR
Sbjct: 506 FKVLITTNVFARGIDVAQVSVVINYDLPIKYTDEGTPMVVDGFTQPDCETYLHRIGRTGR 565
Query: 358 FGRKGVAINFITKEERPK-LKEIESHYRIKI-KPTPANLEEL 397
FG+ G+AIN I E+ + +E+H+++KI + P+NL EL
Sbjct: 566 FGKTGIAINLIDSEDSMNMINVLENHFQMKIARMDPSNLVEL 607
>CE18220 [A] KOG0332 ATP-dependent RNA helicase
Length = 638
Score = 221 bits (563), Expect = 1e-57
Identities = 137/402 (34%), Positives = 221/402 (54%), Gaps = 30/402 (7%)
Query: 23 ATFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXG--KDVIAQAQSGTGKTATFTIG 80
++F + LKP++L+ + F++P ++IAQAQSGTGKTA F +
Sbjct: 234 SSFRELRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVLT 293
Query: 81 LLQAIDSKSKELQALVLSPTRELASQSESVISNLGDYL-NVTAH-ACTGGKALQQDIKKV 138
+L ID Q + L+PT ELA Q V+ +G ++ N+ H A GG +K+
Sbjct: 294 MLCRIDVNLMCPQCICLAPTLELAKQIGEVVEKMGKFIDNLKIHYAIKGGNMAAMRGRKL 353
Query: 139 SKNCQVVSGTPGRVLDMIKR-QVLNVRNCKILVLDEADELLGETLGFKQ---QIYDIFTK 194
++ Q+V GTPG D +++ + ++ + LVLDEAD ++ GF IY++
Sbjct: 354 TE--QIVIGTPGITRDYLQKYKCIDPSKIRCLVLDEADVMIYHQ-GFTDISTTIYNMVED 410
Query: 195 LPPTIQVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDT 254
++Q ++ SAT + ++ K + + + +++KR+E +L IKQ+YV + K+
Sbjct: 411 ASDSVQSMLFSATYDEPVINFATKIIKNAIVVMLKREEQALPNIKQFYVQCACRDSKYAA 470
Query: 255 LCDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGK 314
+ +LY L + VIFC+T+ V WL + V +HGDM ER + F+ G
Sbjct: 471 IVNLYSGLAVASSVIFCHTKASVMWLYENMRARGHQVDVLHGDMTVVERADTIIHFKRGD 530
Query: 315 ARVLISTDVWARGIDVQQISLVINYDIP-----------------DNLENYIHRIGRSGR 357
+VLI+T+V+ARGIDV Q+S+VINYD+P + E Y+HRIGR+GR
Sbjct: 531 FKVLITTNVFARGIDVAQVSVVINYDLPIKYTDEGTPMVVDGFTQPDCETYLHRIGRTGR 590
Query: 358 FGRKGVAINFITKEERPK-LKEIESHYRIKI-KPTPANLEEL 397
FG+ G+AIN I E+ + +E+H+++KI + P+NL EL
Sbjct: 591 FGKTGIAINLIDSEDSMNMINVLENHFQMKIARMDPSNLVEL 632
>CE18219 [A] KOG0332 ATP-dependent RNA helicase
Length = 1022
Score = 221 bits (563), Expect = 1e-57
Identities = 137/402 (34%), Positives = 221/402 (54%), Gaps = 30/402 (7%)
Query: 23 ATFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXG--KDVIAQAQSGTGKTATFTIG 80
++F + LKP++L+ + F++P ++IAQAQSGTGKTA F +
Sbjct: 618 SSFRELRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVLT 677
Query: 81 LLQAIDSKSKELQALVLSPTRELASQSESVISNLGDYL-NVTAH-ACTGGKALQQDIKKV 138
+L ID Q + L+PT ELA Q V+ +G ++ N+ H A GG +K+
Sbjct: 678 MLCRIDVNLMCPQCICLAPTLELAKQIGEVVEKMGKFIDNLKIHYAIKGGNMAAMRGRKL 737
Query: 139 SKNCQVVSGTPGRVLDMIKR-QVLNVRNCKILVLDEADELLGETLGFKQ---QIYDIFTK 194
++ Q+V GTPG D +++ + ++ + LVLDEAD ++ GF IY++
Sbjct: 738 TE--QIVIGTPGITRDYLQKYKCIDPSKIRCLVLDEADVMIYHQ-GFTDISTTIYNMVED 794
Query: 195 LPPTIQVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDT 254
++Q ++ SAT + ++ K + + + +++KR+E +L IKQ+YV + K+
Sbjct: 795 ASDSVQSMLFSATYDEPVINFATKIIKNAIVVMLKREEQALPNIKQFYVQCACRDSKYAA 854
Query: 255 LCDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGK 314
+ +LY L + VIFC+T+ V WL + V +HGDM ER + F+ G
Sbjct: 855 IVNLYSGLAVASSVIFCHTKASVMWLYENMRARGHQVDVLHGDMTVVERADTIIHFKRGD 914
Query: 315 ARVLISTDVWARGIDVQQISLVINYDIP-----------------DNLENYIHRIGRSGR 357
+VLI+T+V+ARGIDV Q+S+VINYD+P + E Y+HRIGR+GR
Sbjct: 915 FKVLITTNVFARGIDVAQVSVVINYDLPIKYTDEGTPMVVDGFTQPDCETYLHRIGRTGR 974
Query: 358 FGRKGVAINFITKEERPK-LKEIESHYRIKI-KPTPANLEEL 397
FG+ G+AIN I E+ + +E+H+++KI + P+NL EL
Sbjct: 975 FGKTGIAINLIDSEDSMNMINVLENHFQMKIARMDPSNLVEL 1016
>Hs14251212 [K] KOG4284 DEAD box protein
Length = 824
Score = 215 bits (547), Expect = 1e-55
Identities = 131/378 (34%), Positives = 203/378 (53%), Gaps = 11/378 (2%)
Query: 23 ATFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLL 82
A FES+ L +L G+ GFE P G D+I QA+SGTGKT F+ L
Sbjct: 62 ADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIAL 121
Query: 83 QAIDSKSKELQALVLSPTRELASQSESVISNLGDYLN-VTAHACTGGKALQQDIKKVSKN 141
++ ++ Q L+L+PTRE+A Q SVI+ +G + + H GG L QD ++ K
Sbjct: 122 DSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKK- 180
Query: 142 CQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQV 201
C + G+PGR+ +I+ LN + ++ +LDEAD+LL E F++QI I++ LP + Q+
Sbjct: 181 CHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEG-SFQEQINWIYSSLPASKQM 239
Query: 202 VVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKE-------EWKFDT 254
+ VSAT + + K+M DP + + + SL +KQYY V E K
Sbjct: 240 LAVSATYPEFLANALTKYMRDPTFVRLNSSDPSLIGLKQYYKVVNSYPLAHKVFEEKTQH 299
Query: 255 LCDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGK 314
L +L+ + Q ++F N + L+ L+ F + G+M Q +R M +
Sbjct: 300 LQELFSRIPFNQALVFSNLHSRAQHLADILSSKGFPAECISGNMNQNQRLDAMAKLKHFH 359
Query: 315 ARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITK-EER 373
RVLISTD+ +RGID ++++LV+N D+P + E Y+HRIGR+GRFG G+ + + + EE
Sbjct: 360 CRVLISTDLTSRGIDAEKVNLVVNLDVPLDWETYMHRIGRAGRFGTLGLTVTYCCRGEEE 419
Query: 374 PKLKEIESHYRIKIKPTP 391
+ I I + P P
Sbjct: 420 NMMMRIAQKCNINLLPLP 437
>At3g06480 [A] KOG0331 ATP-dependent RNA helicase
Length = 1088
Score = 214 bits (545), Expect = 2e-55
Identities = 126/355 (35%), Positives = 207/355 (57%), Gaps = 9/355 (2%)
Query: 24 TFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIG--- 80
TFES L P++LR + GF P +D++A A++G+GKT + I
Sbjct: 436 TFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFI 495
Query: 81 LLQAIDSKSKE-LQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVS 139
LL+ + S+ L+L+PTRELA+Q + G ++ GG +K++
Sbjct: 496 LLRHCRNDSRNGPTVLILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELE 555
Query: 140 KNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTI 199
+ +V TPGR+ D+++ ++++ + +LVLDEAD +L +GF+ QI I ++PP
Sbjct: 556 RGADIVVATPGRLNDILEMKMIDFQQVSLLVLDEADRMLD--MGFEPQIRKIVNEIPPRR 613
Query: 200 QVVVVSATMSKDILEITKKFMSDPVKILVKR-DEISLDVIKQYYVDVEKEEWKFDTLCDL 258
Q ++ +AT K++ +I + +PV++ + R DE++ + YV+V + K L +
Sbjct: 614 QTLMYTATWPKEVRKIASDLLVNPVQVNIGRVDELAANKAITQYVEVVPQMEKERRLEQI 673
Query: 259 YDSLTI-TQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARV 317
S ++ +IFC+T++ D L+R + + +F +HGD Q ERD V+N FRSGK+ V
Sbjct: 674 LRSQERGSKVIIFCSTKRLCDHLARSVGR-HFGAVVIHGDKTQGERDWVLNQFRSGKSCV 732
Query: 318 LISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEE 372
LI+TDV ARG+D++ I +VINYD P +E+Y+HRIGR+GR G GVA F T+++
Sbjct: 733 LIATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTFFTEQD 787
>At1g55150 [A] KOG0331 ATP-dependent RNA helicase
Length = 501
Score = 213 bits (542), Expect = 4e-55
Identities = 121/362 (33%), Positives = 199/362 (54%), Gaps = 8/362 (2%)
Query: 24 TFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQ 83
+F + +L + GF P G+D+I A++G+GKT ++ + +
Sbjct: 100 SFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIV 159
Query: 84 AIDSKSKELQA-----LVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKV 138
++++ LVL+PTRELA Q + S G + GG ++ +
Sbjct: 160 HVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDL 219
Query: 139 SKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPT 198
K ++V TPGR++DM++ N+R LVLDEAD +L +GF QI I + + P
Sbjct: 220 QKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLD--MGFDPQIRKIVSHIRPD 277
Query: 199 IQVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDL 258
Q + SAT K++ +++KKF+ +P K+++ ++ + + VDV E K++ L L
Sbjct: 278 RQTLYWSATWPKEVEQLSKKFLYNPYKVIIGSSDLKANRAIRQIVDVISESQKYNKLVKL 337
Query: 259 Y-DSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARV 317
D + ++ ++F +T+K D ++R+L + S+HGD Q ERD V+++FRSGK+ +
Sbjct: 338 LEDIMDGSRILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPI 397
Query: 318 LISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLK 377
+ +TDV ARG+DV+ + VINYD P +LE+Y+HRIGR+GR G KG A F T K
Sbjct: 398 MTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANARFAK 457
Query: 378 EI 379
E+
Sbjct: 458 EL 459
>7295314 [A] KOG0331 ATP-dependent RNA helicase
Length = 811
Score = 207 bits (528), Expect = 2e-53
Identities = 118/366 (32%), Positives = 199/366 (54%), Gaps = 10/366 (2%)
Query: 22 SATFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGL 81
S FE ++ I GF P G+D++ AQ+G+GKT + +
Sbjct: 149 SIEFEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLPA 208
Query: 82 LQAIDSKSKELQ-----ALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIK 136
+ I+++ + + ALVL+PTRELA Q + V G +V GG Q +
Sbjct: 209 VVHINNQPRLERGDGPIALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQQAR 268
Query: 137 KVSKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLP 196
+ + ++V TPGR++D ++R +++ C LVLDEAD +L +GF+ QI I ++
Sbjct: 269 DLERGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLD--MGFEPQIRKIMQQIR 326
Query: 197 PTIQVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLC 256
P QV++ SAT K++ ++ ++F+++ +++ + +S + VDV E K L
Sbjct: 327 PDRQVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDENEKLMKLI 386
Query: 257 DLYDSLTI---TQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSG 313
L ++ T+ +IF T+K+VD ++R +++ + ++HGD Q+ERD V++ FR+G
Sbjct: 387 KLLTDISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNG 446
Query: 314 KARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEER 373
+ +L++TDV ARG+DV + VINYD P N E+Y+HRIGR+GR G A T
Sbjct: 447 RHSILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSNA 506
Query: 374 PKLKEI 379
K ++
Sbjct: 507 NKANDL 512
>SPCC10H11.01 [A] KOG0334 RNA helicase
Length = 1014
Score = 206 bits (525), Expect = 4e-53
Identities = 120/370 (32%), Positives = 203/370 (54%), Gaps = 17/370 (4%)
Query: 42 GFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQAIDSKSKELQ------AL 95
G+E P G+DVI A++G+GKT F + + + I + + L+ A+
Sbjct: 437 GYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQ-RPLKTGEGPIAI 495
Query: 96 VLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQVVSGTPGRVLDM 155
+++PTRELA Q LN+ A GG ++ I + + ++V TPGR++D+
Sbjct: 496 IMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEIVVCTPGRMIDV 555
Query: 156 IKR---QVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVVVVSATMSKDI 212
+ +V N+ C LVLDEAD + LGF+ Q+ I + P Q V+ SAT + +
Sbjct: 556 LSANAGRVTNLHRCTYLVLDEADRMFD--LGFEPQVMRIINNIRPDRQTVLFSATFPRAM 613
Query: 213 LEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDL----YDSLTITQCV 268
+ +K + PV+I V + ++Q V+V EE KF L +L Y++ + +
Sbjct: 614 EALARKVLKKPVEITVGGRSVVASEVEQI-VEVRPEESKFSRLLELLGELYNNQLDVRTL 672
Query: 269 IFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGI 328
+F + ++ D L L + ++ +S+HG Q +RD ++D+++G VLI+T V ARG+
Sbjct: 673 VFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYKAGVFDVLIATSVVARGL 732
Query: 329 DVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIESHYRIKIK 388
DV+ + LV+NYD P+++E+Y+HR+GR+GR G GVA+ FIT E+ +I ++ +
Sbjct: 733 DVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITPEQEKYAVDIAKALKMSKQ 792
Query: 389 PTPANLEELS 398
P P L+ L+
Sbjct: 793 PVPKELQTLA 802
>At2g33730 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 733
Score = 206 bits (524), Expect = 5e-53
Identities = 120/388 (30%), Positives = 208/388 (52%), Gaps = 34/388 (8%)
Query: 24 TFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQ 83
++E L +LL+ + G++ P +DVI A++G+GKTA F + +L
Sbjct: 314 SWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLA 373
Query: 84 AID-----SKSKELQ---ALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDI 135
I S+ E + A+V++PTRELA Q E YL + GG+++++
Sbjct: 374 YISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQG 433
Query: 136 KKVSKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKL 195
K+++ C++V TPGR++D ++R+ + C +VLDEAD ++ +GF+ Q+ + +
Sbjct: 434 LKITQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMID--MGFEPQVAGVLDAM 491
Query: 196 PPTI-----------------QVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVI 238
P + + SATM + + +K++ +PV + + + D+I
Sbjct: 492 PSSNLKPENEEEELDEKKIYRTTYMFSATMPPGVERLARKYLRNPVVVTIGTAGKTTDLI 551
Query: 239 KQYYVDVEKEEWKFDTLCDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDM 298
Q+ + + KE KF L L D L ++F NT+K D +++ L + + V+++HG
Sbjct: 552 SQHVI-MMKESEKFFRLQKLLDELGEKTAIVFVNTKKNCDSIAKNLDKAGYRVTTLHGGK 610
Query: 299 KQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRF 358
QE+R+ + FR+ + VL++TDV RGID+ ++ VINYD+P ++E Y HRIGR+GR
Sbjct: 611 SQEQREISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRA 670
Query: 359 GRKGVAINFITKEERPKLKEIESHYRIK 386
G+ GVA +F+T L + E Y +K
Sbjct: 671 GKSGVATSFLT------LHDTEVFYDLK 692
>7298989 [A] KOG0336 ATP-dependent RNA helicase
Length = 703
Score = 206 bits (524), Expect = 5e-53
Identities = 120/356 (33%), Positives = 193/356 (53%), Gaps = 11/356 (3%)
Query: 32 PDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQAIDSKSKE 91
PD+L I GF P G D+I AQ+GTGKT F + + + +S
Sbjct: 292 PDMLEEITKMGFSKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIHTEYQSTP 351
Query: 92 ------LQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQVV 145
LVL+PTRELA Q E + + + A GG I + + +++
Sbjct: 352 RGTRGGANVLVLAPTRELALQIEMEVKKYS-FRGMKAVCVYGGGNRNMQISDLERGAEII 410
Query: 146 SGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVVVVS 205
TPGR+ D+I V++V LVLDEAD +L +GF+ QI + + P Q ++ S
Sbjct: 411 ICTPGRLNDLIMANVIDVSTITYLVLDEADRMLD--MGFEPQIRKVMLDIRPDRQTIMTS 468
Query: 206 ATMSKDILEITKKFMSDPVKILV-KRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLTI 264
AT + + + +M +P+++ V D + +KQ +E + KF+T+ +++
Sbjct: 469 ATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQIIKLMEDDMDKFNTITSFVKNMSS 528
Query: 265 T-QCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDV 323
T + +IFC + + D LS +LT F +HG+ Q +R+Q + D +SG R+L++TDV
Sbjct: 529 TDKIIIFCGRKVRADDLSSELTLDGFMTQCIHGNRDQMDREQAIADIKSGVVRILVATDV 588
Query: 324 WARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEI 379
+RG+D++ I+ VINYD P N+E Y+HR+GR+GR GR+G +I+F T+E+ KE+
Sbjct: 589 ASRGLDIEDITHVINYDFPHNIEEYVHRVGRTGRAGRQGTSISFFTREDWAMAKEL 644
>7296646 [A] KOG0331 ATP-dependent RNA helicase
Length = 577
Score = 206 bits (524), Expect = 5e-53
Identities = 125/366 (34%), Positives = 202/366 (55%), Gaps = 14/366 (3%)
Query: 25 FESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQA 84
F ++L +++ I G++ P G + + A++G+GKT + + +
Sbjct: 141 FSEVHLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIVH 200
Query: 85 IDSKSKELQ------ALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKV 138
I+++ + LQ ALVL+PTRELA Q + V + G V GG ++ +
Sbjct: 201 INNQ-QPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDL 259
Query: 139 SKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPT 198
+ C++V TPGR++D + N++ C LVLDEAD +L +GF+ QI I +++ P
Sbjct: 260 QRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLD--MGFEPQIRKIVSQIRPD 317
Query: 199 IQVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDV----EKEEWKFDT 254
Q ++ SAT K++ ++ + F+ + ++I + E+S + + VDV KEE
Sbjct: 318 RQTLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTL 377
Query: 255 LCDLYD-SLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSG 313
L D+YD S + + +IF T+++VD L R + ++HGD Q ERD V+ +FRSG
Sbjct: 378 LSDIYDTSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSG 437
Query: 314 KARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEER 373
K+ +L++TDV ARG+DV I VIN+D P N E+YIHRIGR+GR KG + F TK
Sbjct: 438 KSNILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNA 497
Query: 374 PKLKEI 379
+ K +
Sbjct: 498 KQAKAL 503
>At5g63120 [A] KOG0331 ATP-dependent RNA helicase
Length = 564
Score = 204 bits (520), Expect = 1e-52
Identities = 115/361 (31%), Positives = 199/361 (54%), Gaps = 8/361 (2%)
Query: 25 FESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQA 84
F+ N ++L I GF P G+D+I A++G+GKT + + L
Sbjct: 140 FQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVH 199
Query: 85 IDSKSKELQ-----ALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVS 139
+ ++ + Q L+L+PTRELA Q + G V + GG I+ +
Sbjct: 200 VSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLR 259
Query: 140 KNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTI 199
+ ++V TPGR++DM++ Q N++ LVLDEAD +L +GF+ QI I +++ P
Sbjct: 260 RGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLD--MGFEPQIRKIVSQIRPDR 317
Query: 200 QVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLY 259
Q ++ SAT +++ + ++F+ DP K ++ ++ + +++ K++ L L
Sbjct: 318 QTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLL 377
Query: 260 DSLTI-TQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVL 318
L ++ +IF T++ D ++R+L + ++HGD Q ERD+V+ +F+SG++ ++
Sbjct: 378 KQLMDGSKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIM 437
Query: 319 ISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKE 378
+TDV ARG+DV+ I V+NYD P+ LE+YIHRIGR+GR G KG+A F T + +E
Sbjct: 438 TATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKFARE 497
Query: 379 I 379
+
Sbjct: 498 L 498
>7290853 [A] KOG0331 ATP-dependent RNA helicase
Length = 945
Score = 203 bits (516), Expect = 4e-52
Identities = 120/373 (32%), Positives = 206/373 (55%), Gaps = 17/373 (4%)
Query: 24 TFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQ 83
+FE +L ++ + GF P G+D++ AQ+G+GKT + + +
Sbjct: 238 SFEESSLPAHVIEEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIV 297
Query: 84 AIDSKSKELQ-----ALVLSPTRELASQSESVISNLGDYLNVTA-HACT-GGKALQQDIK 136
I ++ ++ ALVL+PTRELA Q +SV+ + G H C GG + +
Sbjct: 298 HIGNQPPIIRGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQAR 357
Query: 137 KVSKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLP 196
+ + +V+ TPGR++D ++ + N++ C LVLDEAD +L +GF+ QI I ++
Sbjct: 358 DLDRGVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLD--MGFEPQIRKIIEQIR 415
Query: 197 PTIQVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLC 256
P QVV+ SAT K++ + F++D ++I + +S + + V++ E K L
Sbjct: 416 PDRQVVMWSATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICTEIEKPQRLV 475
Query: 257 DLYDSLTI--------TQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMN 308
L + ++ + ++F T+ KV+ + + + ++ +S+HGD Q ERD V+
Sbjct: 476 CLLNEISPIKNSGNNGNKIIVFVETKIKVEDILQIIRAEGYNATSIHGDKTQNERDSVLK 535
Query: 309 DFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFI 368
DFR+GK+ +LI+TDV +RG+DV+ + VINYD P++ ENY+HRIGR+GR + G A F
Sbjct: 536 DFRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFF 595
Query: 369 TKEERPKLKEIES 381
T + + +E+ S
Sbjct: 596 TPDNAKQARELIS 608
>YNL112w [A] KOG0331 ATP-dependent RNA helicase
Length = 546
Score = 201 bits (511), Expect = 2e-51
Identities = 116/358 (32%), Positives = 202/358 (56%), Gaps = 10/358 (2%)
Query: 24 TFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQ 83
TF+ +L + GF+ P G+D++ A +G+GKT ++ + +
Sbjct: 114 TFDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIV 173
Query: 84 AIDSKSKELQA-----LVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKV 138
I+++ LVL+PTRELA Q ++ S G + GG Q I+ +
Sbjct: 174 HINAQPLLAPGDGPIVLVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQIRDL 233
Query: 139 SKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPT 198
S+ ++V TPGR++DM++ N++ LVLDEAD +L +GF+ QI I ++ P
Sbjct: 234 SRGSEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLD--MGFEPQIRKIVDQIRPD 291
Query: 199 IQVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDL 258
Q ++ SAT K++ ++ +++DP+++ V E+S V+V + K D L
Sbjct: 292 RQTLMWSATWPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKY 351
Query: 259 YDSLTIT---QCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKA 315
++ + + +IF +T++ D +++ L + + ++HGD Q ERD V+ +FR+G++
Sbjct: 352 LETASQDNEYKTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRS 411
Query: 316 RVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEER 373
++++TDV ARGIDV+ I+ VINYD+P N+E+Y+HRIGR+GR G G AI+F T++ +
Sbjct: 412 PIMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQNK 469
>SPAC30D11.03 [A] KOG0338 ATP-dependent RNA helicase
Length = 754
Score = 200 bits (509), Expect = 3e-51
Identities = 115/363 (31%), Positives = 202/363 (54%), Gaps = 8/363 (2%)
Query: 23 ATFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLL 82
++F+SMNL +L+G+ GFE P GKD++ A +G+GKTA F + +L
Sbjct: 259 SSFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPIL 318
Query: 83 QAIDSKSKEL---QALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVS 139
+ + + K++ + L+L PTRELA Q SV + + + ++ C GG +L+ +++
Sbjct: 319 ERLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELR 378
Query: 140 KNCQVVSGTPGRVLDMIKR-QVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPT 198
K +V TPGR +D ++ Q V N +I+V+DEAD +L + GF ++ +I P +
Sbjct: 379 KRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLED--GFADELNEIIQACPKS 436
Query: 199 IQVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDV--EKEEWKFDTLC 256
Q ++ SATM+ + ++ + ++ PV++ V + + ++ Q +V V ++E + L
Sbjct: 437 RQTMLFSATMTDKVDDLIRLSLNRPVRVFVDNKKTTAKLLTQEFVRVRPQRELLRPAMLI 496
Query: 257 DLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKAR 316
L L + +IF ++ + + + + +HG + QE+R + + DFR GK
Sbjct: 497 YLCKELFHRRTIIFFRSKAFAHKMRVIFGLLSLNATEIHGSLSQEQRVRALEDFRDGKCN 556
Query: 317 VLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKL 376
L++TDV +RGID++ I +VINY+ P E Y+HR+GR+ R GR G AI + +R L
Sbjct: 557 YLLATDVASRGIDIKGIEVVINYEAPATHEVYLHRVGRTARAGRSGRAITLAGEGDRKVL 616
Query: 377 KEI 379
K +
Sbjct: 617 KGV 619
>At3g01540 [A] KOG0331 ATP-dependent RNA helicase
Length = 619
Score = 200 bits (508), Expect = 4e-51
Identities = 121/355 (34%), Positives = 197/355 (55%), Gaps = 9/355 (2%)
Query: 24 TFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIG--- 80
+FE+ P+LLR + GF P G+D++A A++G+GKT + I
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFL 218
Query: 81 LLQAIDSKSKELQA-LVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVS 139
LQ I + S+ LVLSPTRELA+Q + G ++ GG ++ +
Sbjct: 219 HLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLE 278
Query: 140 KNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTI 199
+ +V TPGR+ D+++ + +++R LVLDEAD +L +GF+ QI I ++P
Sbjct: 279 RGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLD--MGFEPQIRKIVKEIPTKR 336
Query: 200 QVVVVSATMSKDILEITKKFMSDPVKILVKR-DEISLDVIKQYYVDVEKEEWKFDTLCDL 258
Q ++ +AT K + +I + +P ++ + DE+ + +++V K L +
Sbjct: 337 QTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLEQI 396
Query: 259 YDSLTI-TQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARV 317
S ++ +IFC+T++ D L+R LT+ F +++HGD Q ERD V+N FRSG+ V
Sbjct: 397 LRSQEPGSKVIIFCSTKRMCDQLTRNLTR-QFGAAAIHGDKSQPERDNVLNQFRSGRTPV 455
Query: 318 LISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEE 372
L++TDV ARG+DV+ I V+NYD P+ +E+Y+HRIGR+GR G G A F ++
Sbjct: 456 LVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQD 510
>ECU08g1080 [A] KOG0331 ATP-dependent RNA helicase
Length = 495
Score = 199 bits (506), Expect = 6e-51
Identities = 115/379 (30%), Positives = 204/379 (53%), Gaps = 8/379 (2%)
Query: 25 FESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTI-GLLQ 83
FE +++ + GF P G+D++ AQ+G+GKT +F + L+
Sbjct: 89 FEEAGFSSEVVSSLVEKGFSEPTAIQGQGWPMALSGRDMVGIAQTGSGKTLSFILPALVH 148
Query: 84 AIDSKSKELQ----ALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVS 139
A D + LVL+PTREL Q + V+ N+ + A GG + Q I+ +
Sbjct: 149 AKDQQPLRRGDGPIVLVLAPTRELVMQIKKVVDEFCGMFNLRSTAVYGGASSQPQIRALH 208
Query: 140 KNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTI 199
+ +VV TPGR++D+ + + LVLDEAD +L +GF+ Q+ I K
Sbjct: 209 EGAEVVIATPGRLIDLHDQGHAPLSRVTFLVLDEADRMLD--MGFEPQLRKIIPKTNANR 266
Query: 200 QVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLY 259
Q ++ SAT +++ + + +M++ ++++V +E+ + + V+V K D L +
Sbjct: 267 QTLMWSATWPREVRGLAESYMNEYIQVVVGNEELKTNSKIKQIVEVCSGREKEDKLIGVL 326
Query: 260 DSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLI 319
D+ + ++FCN ++ D L L ++ + +++HGD Q RD+V++DFRSG+ +LI
Sbjct: 327 DNFKGDKVIVFCNMKRTCDDLEYVLNRSGYGAAALHGDKSQNIRDKVLDDFRSGRRPILI 386
Query: 320 STDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRK-GVAINFITKEERPKLKE 378
+T+V RG+DV + LVIN+D P + E+Y+HRIGR+ R K G++ F T ++ +E
Sbjct: 387 ATEVAGRGLDVNDVKLVINFDFPGSCEDYVHRIGRTARGNTKEGISHTFFTVGDKANARE 446
Query: 379 IESHYRIKIKPTPANLEEL 397
+ R + P++LE++
Sbjct: 447 LIRMLREANQTVPSDLEDM 465
>Hs5453840_1 [A] KOG0331 ATP-dependent RNA helicase
Length = 469
Score = 199 bits (506), Expect = 6e-51
Identities = 117/333 (35%), Positives = 187/333 (56%), Gaps = 14/333 (4%)
Query: 60 GKDVIAQAQSGTGKTATFTIGLLQAID-----SKSKELQALVLSPTRELASQSESVISNL 114
G+D++ AQ+G+GKT + + + I+ + LVL+PTRELA Q + V +
Sbjct: 129 GRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDY 188
Query: 115 GDYLNVTAHACTGGKALQQDIKKVSKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEA 174
G + + GG I+ + + ++ TPGR++D ++ N+R C LVLDEA
Sbjct: 189 GKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEA 248
Query: 175 DELLGETLGFKQQIYDIFTKLPPTIQVVVVSATMSKDILEITKKFMSDPVKILVKRDEIS 234
D +L +GF+ QI I ++ P Q ++ SAT K++ ++ + F+ D +I V E+S
Sbjct: 249 DRMLD--MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELS 306
Query: 235 LDVIKQYYVDVEKEEWKFDTLCDLYDSLTI---TQCVIFCNTRKKVDWLSRKLTQTNFSV 291
+ VDV E K L L + + + +IF T+++ D L+R++ + +
Sbjct: 307 ANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPA 366
Query: 292 SSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHR 351
+HGD Q ERD V+N+FRSGKA +LI+TDV +RG+DV+ + VINYD P++ E+Y+HR
Sbjct: 367 MCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHR 426
Query: 352 IGRSGRFGRKGVAINFIT----KEERPKLKEIE 380
IGR+ R KG A F T K+ R +K +E
Sbjct: 427 IGRTARSTNKGTAYTFFTPGNLKQARELIKVLE 459
>CE18785 [A] KOG0331 ATP-dependent RNA helicase
Length = 561
Score = 198 bits (504), Expect = 1e-50
Identities = 118/356 (33%), Positives = 187/356 (52%), Gaps = 10/356 (2%)
Query: 32 PDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLL-----QAID 86
P + + + F+ P G+D+I+ A++G+GKT F + L QA
Sbjct: 138 PGQIHELLYGKFQKPTVIQSISWPIAMSGRDIISIAKTGSGKTLAFMLPALVHITKQAHR 197
Query: 87 SKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQVVS 146
+ + LVL PTRELA Q + V + L + GG + + + + +V
Sbjct: 198 QRGEGPAVLVLLPTRELAQQVQEVSIDFCHSLGLKMTCLFGGASKGPQARDLERGVDIVV 257
Query: 147 GTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVVVVSA 206
TPGR+LD + N++ C LVLDEAD +L +GF+ QI I ++ P Q ++ SA
Sbjct: 258 ATPGRLLDFLDNGTTNMKKCSYLVLDEADRMLD--MGFEPQIKKIIGQIRPDRQTLMFSA 315
Query: 207 TMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSL-TIT 265
T K++ + F D + V E++ + VD+ +E K L +L + +
Sbjct: 316 TWPKEVRALASDFQKDAAFLNVGSLELAANHNITQVVDILEEHAKQAKLMELLNHIMNQK 375
Query: 266 QC--VIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDV 323
+C +IF T++K D L+R + + + +HGD Q ERD V+ +F++GK ++++TDV
Sbjct: 376 ECKTIIFVETKRKADELTRAMRRDGWPTLCIHGDKNQGERDWVLQEFKAGKTPIMLATDV 435
Query: 324 WARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEI 379
ARG+DV I VINYD P+N E+Y+HRIGR+GR +KG A F T K K++
Sbjct: 436 AARGLDVDDIKFVINYDYPNNSEDYVHRIGRTGRSDKKGTAYTFFTHTNASKAKDL 491
>SPBP8B7.16c [A] KOG0331 ATP-dependent RNA helicase
Length = 550
Score = 196 bits (499), Expect = 4e-50
Identities = 122/383 (31%), Positives = 202/383 (51%), Gaps = 10/383 (2%)
Query: 24 TFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLL- 82
TFE +L+ + GFE P G+D++ + +G+GKT ++ + +
Sbjct: 123 TFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIV 182
Query: 83 ----QAIDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKV 138
Q + S LVL+PTRELA Q + + G + GG I+ +
Sbjct: 183 HINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDL 242
Query: 139 SKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPT 198
+ ++ TPGR+LDM+ N+R LVLDEAD +L +GF+ QI I ++ P
Sbjct: 243 IRGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLD--MGFEPQIRKIVDQIRPD 300
Query: 199 IQVVVVSATMSKDILEITKKFMSDPVKILV-KRDEISLDVIKQYYVDVEKEEWKFDTLCD 257
Q V+ SAT K++ + + +++D +++ V D + IKQ V+ + + D
Sbjct: 301 RQTVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGKD 360
Query: 258 LYDSLTI--TQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKA 315
+ + L + +IF T++ D ++R L Q + ++HGD Q+ERD V+N+FR+GK+
Sbjct: 361 IEEVLKDRDNKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKS 420
Query: 316 RVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPK 375
++++TDV +RGIDV+ I+ V NYD P N E+Y+HRIGR+GR G KG A + T + +
Sbjct: 421 PIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQ 480
Query: 376 LKEIESHYRIKIKPTPANLEELS 398
+E+ S + LEE++
Sbjct: 481 ARELVSILSEAKQDIDPKLEEMA 503
>At5g14610 [A] KOG0331 ATP-dependent RNA helicase
Length = 713
Score = 196 bits (499), Expect = 4e-50
Identities = 121/357 (33%), Positives = 198/357 (54%), Gaps = 9/357 (2%)
Query: 22 SATFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIG- 80
+A F S + P R +Y GF P +D++A A++G+GKT + I
Sbjct: 228 AAGFNSYLVLPANGRMVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPG 287
Query: 81 --LLQAIDSKSKELQA-LVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKK 137
LQ I + S+ LVLSPTRELA+Q + G ++ GG +K+
Sbjct: 288 FMHLQRIHNDSRMGPTILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKE 347
Query: 138 VSKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPP 197
+ + +V TPGR+ D+++ + +++ LVLDEAD +L +GF+ QI I ++P
Sbjct: 348 IERGVDIVVATPGRLNDILEMKRISLHQVSYLVLDEADRMLD--MGFEPQIRKIVNEVPT 405
Query: 198 TIQVVVVSATMSKDILEITKKFMSDPVKILVKR-DEISLDVIKQYYVDVEKEEWKFDTLC 256
Q ++ +AT K++ +I + +P ++ + DE+ + ++V K L
Sbjct: 406 KRQTLMYTATWPKEVRKIAADLLVNPAQVNIGNVDELVANKSITQTIEVLAPMEKHSRLE 465
Query: 257 DLYDSLTI-TQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKA 315
+ S ++ +IFC+T++ D L+R LT+T F +++HGD Q ERD V+N FRSG+
Sbjct: 466 QILRSQEPGSKIIIFCSTKRMCDQLARNLTRT-FGAAAIHGDKSQAERDDVLNQFRSGRT 524
Query: 316 RVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEE 372
VL++TDV ARG+DV+ I +V+NYD P+ +E+Y+HRIGR+GR G G+A F ++
Sbjct: 525 PVLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQD 581
>At2g47330 [A] KOG0339 ATP-dependent RNA helicase
Length = 748
Score = 196 bits (499), Expect = 4e-50
Identities = 120/386 (31%), Positives = 199/386 (51%), Gaps = 17/386 (4%)
Query: 24 TFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQ 83
TFE ++ I +E P G+DVI A++G+GKTA F + ++
Sbjct: 229 TFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIV 288
Query: 84 AIDSKSKELQ------ALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKK 137
I + ELQ ++ +PTRELA Q + A GG + + K+
Sbjct: 289 HIMDQP-ELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKE 347
Query: 138 VSKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPP 197
+ C++V TPGR++DM+K + L + LVLDEAD + LGF+ Q+ I ++ P
Sbjct: 348 LKAGCEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFD--LGFEPQVRSIVGQIRP 405
Query: 198 TIQVVVVSATMSKDILEITKKFMSDPVKILVKR----DEISLDVIKQYYVDVEKEEWKFD 253
Q ++ SATM + ++ ++ +SDP+++ V +E V+ D EK W +
Sbjct: 406 DRQTLLFSATMPWKVEKLAREILSDPIRVTVGEVGMANEDITQVVNVIPSDAEKLPWLLE 465
Query: 254 TLCDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSG 313
L + D + ++F + + VD + +LT +F V+++HGD Q R + + F+SG
Sbjct: 466 KLPGMIDEGDV---LVFASKKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQKFKSG 522
Query: 314 KARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFG-RKGVAINFITKEE 372
VLI+TDV ARG+D++ + V+NYDI +++ ++HRIGR+GR G R GVA +T+ E
Sbjct: 523 VHHVLIATDVAARGLDIKSLKTVVNYDIAKDMDMHVHRIGRTGRAGDRDGVAYTLVTQRE 582
Query: 373 RPKLKEIESHYRIKIKPTPANLEELS 398
E+ + + P L +L+
Sbjct: 583 ARFAGELVNSLVAAGQNVPPELTDLA 608
>At1g77050 [A] KOG0337 ATP-dependent RNA helicase
Length = 513
Score = 196 bits (498), Expect = 5e-50
Identities = 121/382 (31%), Positives = 207/382 (53%), Gaps = 10/382 (2%)
Query: 22 SATFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGL 81
S FES+NL P++ I G++ P G DV+A A++G+GKTA F I +
Sbjct: 27 SGGFESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPM 86
Query: 82 LQAIDSKSKE--LQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVS 139
L+ + + ++AL+LSPTR+LA Q+ LG + ++ GG +++ ++++
Sbjct: 87 LEKLKQHVPQGGVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEELT 146
Query: 140 KNCQVVSGTPGRVLDMIKR-QVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPT 198
K V+ TPGR++ ++ + +R + +V DEAD L G +GF +Q++ I T+L
Sbjct: 147 KGPDVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLFG--MGFAEQLHQILTQLSEN 204
Query: 199 IQVVVVSATMSKDILEITKKFMSDPVKI-LVKRDEISLDVIKQYYVDVEKEEWKFDTLCD 257
Q ++ SAT+ + E K + +P + L ++IS D +K ++ V EE K+ L
Sbjct: 205 RQTLLFSATLPSALAEFAKAGLREPQLVRLDVENKISPD-LKLSFLTVRPEE-KYSALLY 262
Query: 258 LYDSLTIT--QCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKA 315
L + Q +IF +T+ V++++ N S +GDM Q+ R ++ FR+ K
Sbjct: 263 LVREHISSDQQTLIFVSTKHHVEFVNSLFKLENIEPSVCYGDMDQDARKIHVSRFRARKT 322
Query: 316 RVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPK 375
+LI TD+ ARGID+ + VIN+D P + ++HR+GR+ R GR G A +F+T E+ P
Sbjct: 323 MLLIVTDIAARGIDIPLLDNVINWDFPPRPKIFVHRVGRAARAGRTGCAYSFVTPEDMPY 382
Query: 376 LKEIESHYRIKIKPTPANLEEL 397
+ ++ ++P P E L
Sbjct: 383 MLDLHLFLSKPVRPAPTEDEVL 404
>Hs10346129 [A] KOG0336 ATP-dependent RNA helicase
Length = 648
Score = 196 bits (497), Expect = 7e-50
Identities = 121/349 (34%), Positives = 194/349 (54%), Gaps = 12/349 (3%)
Query: 32 PDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTI-GLLQAIDSKSK 90
P+++ I GF+ P G D+I AQ+GTGKT + + G + + S
Sbjct: 251 PEVMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLVLQPSL 310
Query: 91 ELQA-----LVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQVV 145
+ Q LVL+PTRELA Q E Y + + GG + I+++ K ++
Sbjct: 311 KGQRNRPGMLVLTPTRELALQVEGECCKYS-YKGLRSVCVYGGGNRDEQIEELKKGVDII 369
Query: 146 SGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVVVVS 205
TPGR+ D+ +N++N LVLDEAD++L +GF+ QI I + P Q V+ S
Sbjct: 370 IATPGRLNDLQMSNFVNLKNITYLVLDEADKMLD--MGFEPQIMKILLDVRPDRQTVMTS 427
Query: 206 ATMSKDILEITKKFMSDPVKILVKR-DEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLTI 264
AT + + + ++ +P+ + V D +++ +KQ + V EE K+ + S++
Sbjct: 428 ATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNII-VTTEEEKWSHMQTFLQSMSS 486
Query: 265 TQCVIFCNTRKKV-DWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDV 323
T VI +RK V D LS L N SV S+HGD +Q +R++ + +F++GK R+LI+TD+
Sbjct: 487 TDKVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGKVRILIATDL 546
Query: 324 WARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEE 372
+RG+DV ++ V N+D P N+E Y+HRIGR+GR GR GV+I +T+ +
Sbjct: 547 ASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRND 595
>At3g22330 [A] KOG0331 ATP-dependent RNA helicase
Length = 620
Score = 194 bits (493), Expect = 2e-49
Identities = 119/384 (30%), Positives = 201/384 (51%), Gaps = 35/384 (9%)
Query: 28 MNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQAI-- 85
+ + P++++ + G E G+D+I +A++GTGKT F I ++ I
Sbjct: 109 LGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIK 168
Query: 86 ----DSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKN 141
+ + LVL+PTRELA Q E L+ GG + Q ++++
Sbjct: 169 YNAKHGRGRNPLCLVLAPTRELARQVEKEFRESAPSLDTIC--LYGGTPIGQQMRQLDYG 226
Query: 142 CQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQV 201
V GTPGRV+D++KR LN+ + +VLDEAD++L +GF + + I KLP Q
Sbjct: 227 VDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQML--QVGFAEDVEIILEKLPEKRQS 284
Query: 202 VVVSATMSKDILEITKKFMSDP--VKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLY 259
++ SATM I +TKK++++P V ++ D+ D I Y + + D Y
Sbjct: 285 MMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQKLADGITTYSI-----------IADSY 333
Query: 260 DSLTIT-----------QCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMN 308
+I +C++F T++ D LS L ++ F ++HGD+ Q +R++ +
Sbjct: 334 GRASIIGPLVTEHAKGGKCIVFTQTKRDADRLSYALARS-FKCEALHGDISQSQRERTLA 392
Query: 309 DFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFI 368
FR G +L++TDV ARG+DV + L+I+Y++P+N E ++HR GR+GR G+KG AI
Sbjct: 393 GFRDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIY 452
Query: 369 TKEERPKLKEIESHYRIKIKPTPA 392
++++ +K IE + P+
Sbjct: 453 SQDQSRAVKIIEREVGSRFTELPS 476
>Hs7662318 [A] KOG0334 RNA helicase
Length = 1032
Score = 193 bits (490), Expect = 4e-49
Identities = 112/373 (30%), Positives = 203/373 (54%), Gaps = 12/373 (3%)
Query: 34 LLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQAI-DSKSKEL 92
+L + +G+E P G+D+I A++G+GKT F + + + I D +S E
Sbjct: 383 ILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEE 442
Query: 93 Q----ALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQVVSGT 148
A++++PTRELA Q L + GG + + I ++ + +++ T
Sbjct: 443 GEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCT 502
Query: 149 PGRVLDMIKR---QVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVVVVS 205
PGR++DM+ +V N+R +VLDEAD + +GF+ Q+ I + P Q V+ S
Sbjct: 503 PGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFD--MGFEPQVMRIVDNVRPDRQTVMFS 560
Query: 206 ATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLTIT 265
AT + + + ++ +S P+++ V + ++Q + +E+E+ KF L +L +
Sbjct: 561 ATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEK-KFLKLLELLGHYQES 619
Query: 266 -QCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVW 324
+IF + ++ D L + L + ++ S+HG + Q +RD ++NDF++G ++L++T V
Sbjct: 620 GSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVA 679
Query: 325 ARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIESHYR 384
ARG+DV+ + LV+NY P++ E+Y+HR GR+GR G KG A FIT+++ +I
Sbjct: 680 ARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALE 739
Query: 385 IKIKPTPANLEEL 397
+ P +LE+L
Sbjct: 740 LSGTAVPPDLEKL 752
>At3g22310 [A] KOG0331 ATP-dependent RNA helicase
Length = 610
Score = 192 bits (489), Expect = 6e-49
Identities = 119/384 (30%), Positives = 201/384 (51%), Gaps = 35/384 (9%)
Query: 28 MNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQAI-- 85
+ + P++++ + G E G+D+I +A++GTGKT F I ++ I
Sbjct: 121 LGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIK 180
Query: 86 ----DSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKN 141
+ K Q LVL+PTRELA Q E L+ GG + Q +++++
Sbjct: 181 FNAKHGRGKNPQCLVLAPTRELARQVEKEFRESAPSLDTIC--LYGGTPIGQQMRELNYG 238
Query: 142 CQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQV 201
V GTPGR++D++KR LN+ + +VLDEAD++L +GF + + I KLP Q
Sbjct: 239 IDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQML--QVGFAEDVEIILQKLPAKRQS 296
Query: 202 VVVSATMSKDILEITKKFMSDPVKI--LVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLY 259
++ SATM I +TKK++++P+ I + D+ D I Y + D Y
Sbjct: 297 MMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSI-----------AADSY 345
Query: 260 DSLTIT-----------QCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMN 308
+I +C++F T++ D L+ L ++ + ++HGD+ Q +R++ +
Sbjct: 346 GRASIIGPLVKEHGKGGKCIVFTQTKRDADRLAFGLAKS-YKCEALHGDISQAQRERTLA 404
Query: 309 DFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFI 368
FR G +L++TDV ARG+DV + LVI+Y++P+N E ++HR GR+GR G+KG AI
Sbjct: 405 GFRDGNFSILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIH 464
Query: 369 TKEERPKLKEIESHYRIKIKPTPA 392
+++ +K IE + P+
Sbjct: 465 GQDQTRAVKMIEKEVGSRFNELPS 488
>7293060 [A] KOG0334 RNA helicase
Length = 1224
Score = 192 bits (487), Expect = 1e-48
Identities = 118/368 (32%), Positives = 199/368 (54%), Gaps = 18/368 (4%)
Query: 42 GFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQAI-DSKSKE----LQALV 96
GFE P G+D+I A++G+GKT F + + + I D S E A++
Sbjct: 529 GFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHILDQPSMEDGDGAIAII 588
Query: 97 LSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQVVSGTPGRVLDMI 156
++PTREL Q I L + GG + + I ++ + +++ TPGR++DM+
Sbjct: 589 MAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDML 648
Query: 157 KR---QVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVVVVSATMSKDIL 213
+V N+R +VLDEAD + +GF+ Q+ I + P Q V+ SAT + +
Sbjct: 649 AANSGRVTNLRRVTYVVLDEADRMFD--MGFEPQVMRIIDNVRPDRQTVMFSATFPRQME 706
Query: 214 EITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLTITQ----CVI 269
+ ++ + P++++V + ++Q+ V + ++ KF L +L L I Q ++
Sbjct: 707 ALARRILKKPIEVIVGGRSVVCKEVEQHVV-ILNDDAKFFKLLEL---LGIYQEAGSIIV 762
Query: 270 FCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGID 329
F + ++ D L R L + ++ S+HG + Q +RD + DF+SGK R+LI+T V ARG+D
Sbjct: 763 FVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARGLD 822
Query: 330 VQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIESHYRIKIKP 389
V+ + LV+NYD+P++ E+Y+HR GR+GR G+KG A FIT E+ +I +
Sbjct: 823 VKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRYAGDIIRAMDLSGTL 882
Query: 390 TPANLEEL 397
PA L+ L
Sbjct: 883 IPAELQAL 890
>7299061 [A] KOG0335 ATP-dependent RNA helicase
Length = 798
Score = 191 bits (485), Expect = 2e-48
Identities = 123/375 (32%), Positives = 196/375 (51%), Gaps = 27/375 (7%)
Query: 24 TFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLL- 82
+F+ + L + + ++ P G+D++A AQ+G+GKTA F + +L
Sbjct: 296 SFDDVQLTEIIRNNVALARYDKPTPVQKHAIPIIINGRDLMACAQTGSGKTAAFLVPILN 355
Query: 83 -----------QAIDSKSKELQ---ALVLSPTRELASQSESVISNLGDYLNVTAHACTGG 128
Q+ S+ Q LVL+PTRELA+Q + GG
Sbjct: 356 QMYELGHVPPPQSTRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGG 415
Query: 129 KALQQDIKKVSKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQI 188
+ ++++ + C ++ TPGR+ DMI R + + N + LVLDEAD +L +GF+ QI
Sbjct: 416 NNTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLD--MGFEPQI 473
Query: 189 YDIFTKL--PPT--IQVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQ---Y 241
I +L PPT Q ++ SAT K I E+ F+S+ + + V R + + I Q +
Sbjct: 474 RRIVEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILW 533
Query: 242 YVDVEKEEWKFDTLCDLYDSLTITQ---CVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDM 298
+ +K + D L + D T+ +IF T+K D L L Q N V+S+HGD
Sbjct: 534 VYEPDKRSYLLDLLSSIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDR 593
Query: 299 KQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRF 358
Q+ER++ + FRSG +L++T V ARG+D+ + VIN+D+P ++E Y+HRIGR+GR
Sbjct: 594 TQKEREEALRCFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRM 653
Query: 359 GRKGVAINFITKEER 373
G GVA +F ++ R
Sbjct: 654 GNLGVATSFFNEKNR 668
>At1g20920 [A] KOG0334 RNA helicase
Length = 1166
Score = 189 bits (481), Expect = 5e-48
Identities = 113/366 (30%), Positives = 202/366 (54%), Gaps = 14/366 (3%)
Query: 43 FEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQAI-DSKSKELQ----ALVL 97
+E P G+D I A++G+GKT F + +L+ I D E LV+
Sbjct: 549 YEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVM 608
Query: 98 SPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQVVSGTPGRVLDMI- 156
+PTREL Q S I L + GG + Q I ++ + ++V TPGR++D++
Sbjct: 609 APTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILC 668
Query: 157 --KRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVVVVSATMSKDILE 214
++ N+R LV+DEAD + +GF+ QI I + P Q V+ SAT + +
Sbjct: 669 TSSGKITNLRRVTFLVMDEADRMFD--MGFEPQITRIIQNIRPERQTVLFSATFPRQVET 726
Query: 215 ITKKFMSDPVKILVK-RDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLTIT-QCVIFCN 272
+ +K ++ PV+I V R ++ D+ + V+V E +F L +L + + ++F
Sbjct: 727 LARKVLNKPVEIQVGGRSVVNKDITQ--LVEVRPESDRFLRLLELLGEWSEKGKILVFVQ 784
Query: 273 TRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQ 332
+++K D L R + ++++ S+HG Q +R+ ++DF++ +LI+T V ARG+DV++
Sbjct: 785 SQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVCNLLIATSVAARGLDVKE 844
Query: 333 ISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIESHYRIKIKPTPA 392
+ LV+N+D P++ E+Y+HR+GR+GR GRKG A+ FI++++ ++ + +P P
Sbjct: 845 LELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLVKALELSEQPVPD 904
Query: 393 NLEELS 398
+L+ L+
Sbjct: 905 DLKALA 910
>7294824 [K] KOG4284 DEAD box protein
Length = 1028
Score = 189 bits (481), Expect = 5e-48
Identities = 116/365 (31%), Positives = 195/365 (52%), Gaps = 11/365 (3%)
Query: 24 TFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQ 83
TFE + L +LL G+ F P D+I Q++SGTGKT + I ++Q
Sbjct: 26 TFEELRLYRNLLNGLKRNNFVTPTKIQAAAIPMALAKMDLIIQSKSGTGKTLIYVIAVVQ 85
Query: 84 AIDSKSKELQALVLSPTRELASQSESVISNL-GDYLNVTAHACTGGKALQQDIKKVSKNC 142
+ + + A+++ PTRELA Q + +L + + A GG + +D K+++++
Sbjct: 86 SFNPNINQPHAMIVVPTRELAIQVQDTFFHLCKSFRDFKCSAFIGGTDVAKDRKRMNES- 144
Query: 143 QVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVV 202
+V+ GTPGR+L + + +V +V ++LVLDEAD+L +T + + + +P Q++
Sbjct: 145 RVIIGTPGRLLHLYENRVFDVSKLRLLVLDEADQLY-QTKSLQHTVSKLIEAMPKNRQII 203
Query: 203 VVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVD-------VEKEEWKFDTL 255
SAT +++ E K M P+ I L I+Q+ + VE+ K L
Sbjct: 204 ACSATYDQNLDERLAKVMDKPMLISNSERATVLLGIRQFVYELPQQNNSVEEMRLKLQIL 263
Query: 256 CDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKA 315
+++ L Q +IF +++ + D LT + + G M+Q ER V +R+
Sbjct: 264 GQIFNQLPYEQAIIFASSQMRADSYKNYLTASGIDCHLISGAMEQSERLHVFEGYRNFTM 323
Query: 316 RVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFI-TKEERP 374
R+L++TD+ ARG+D +LVIN D P + Y+HRIGR+GRFG KG+AI FI +K+E
Sbjct: 324 RILVATDLMARGVDSPHANLVINIDPPQDHVTYLHRIGRAGRFGSKGIAITFIASKKESQ 383
Query: 375 KLKEI 379
+ +E+
Sbjct: 384 RFREM 388
>SPCC1795.11 [A] KOG0335 ATP-dependent RNA helicase
Length = 636
Score = 189 bits (479), Expect = 8e-48
Identities = 122/377 (32%), Positives = 191/377 (50%), Gaps = 24/377 (6%)
Query: 25 FESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQA 84
F S L LL+ I G+ P G+D++A AQ+G+GKTA F +L
Sbjct: 171 FTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSL 230
Query: 85 IDSKSKEL------------------QALVLSPTRELASQSESVISNLGDYLNVTAHACT 126
K L+L+PTREL Q V A
Sbjct: 231 AFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVY 290
Query: 127 GGKALQQDIKKVSKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQ 186
GG ++ I+++ + C ++S TPGR++D+I R +++ N K LVLDEAD +L +GF+
Sbjct: 291 GGADIRAQIRQIDQGCDLLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLD--MGFEP 348
Query: 187 QIYDIFTKLPPTI----QVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYY 242
QI I T Q ++ SAT +DI + + F+ D V + V R + + I Q
Sbjct: 349 QIRHIVEGADMTSVEERQTLMFSATFPRDIQLLARDFLKDYVFLSVGRVGSTSENITQKV 408
Query: 243 VDVEKEEWKFDTLCDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEE 302
V VE E + L L+ +IF T++ D L+ L +NF +S+HGD Q E
Sbjct: 409 VHVEDSEKRSYLLDILHTLPPEGLTLIFVETKRMADTLTDYLLNSNFPATSIHGDRTQRE 468
Query: 303 RDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKG 362
R++ + FRSG+ ++++T V +RG+D+ ++ VINYD+P ++++Y+HRIGR+GR G G
Sbjct: 469 RERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTG 528
Query: 363 VAINFITKEERPKLKEI 379
A+ F + + KE+
Sbjct: 529 QAVAFFNRNNKGIAKEL 545
>Hs4758138 [A] KOG0331 ATP-dependent RNA helicase
Length = 614
Score = 189 bits (479), Expect = 8e-48
Identities = 117/369 (31%), Positives = 194/369 (51%), Gaps = 12/369 (3%)
Query: 25 FESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQA 84
F N +++ I F P G D++ AQ+G+GKT ++ + +
Sbjct: 96 FYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVH 155
Query: 85 ID-----SKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVS 139
I+ + LVL+PTRELA Q + V + + + GG I+ +
Sbjct: 156 INHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE 215
Query: 140 KNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTI 199
+ ++ TPGR++D ++ N+R LVLDEAD +L +GF+ QI I ++ P
Sbjct: 216 RGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLD--MGFEPQIRKIVDQIRPDR 273
Query: 200 QVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLD----VIKQYYVDVEKEEWKFDTL 255
Q ++ SAT K++ ++ + F+ D + I + E+S + I DVEK+E K L
Sbjct: 274 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDE-KLIRL 332
Query: 256 CDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKA 315
+ S + ++F T+++ D L+RK+ + + +HGD Q+ERD V+N+F+ GKA
Sbjct: 333 MEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKA 392
Query: 316 RVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPK 375
+LI+TDV +RG+DV+ + VINYD P++ E+YIHRIGR+ R + G A F T +
Sbjct: 393 PILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQ 452
Query: 376 LKEIESHYR 384
+ ++ S R
Sbjct: 453 VSDLISVLR 461
>Hs20149629 [A] KOG0330 ATP-dependent RNA helicase
Length = 455
Score = 188 bits (478), Expect = 1e-47
Identities = 111/375 (29%), Positives = 195/375 (51%), Gaps = 4/375 (1%)
Query: 24 TFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQ 83
TF+ + + L G+ P G+D+I A++G+GKT F + +L
Sbjct: 25 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84
Query: 84 AIDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQ 143
A+ + L ALVL+PTRELA Q LG + V + GG ++K
Sbjct: 85 ALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 144
Query: 144 VVSGTPGRVLDMIKR-QVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVV 202
++ TPGR++D ++ + N+R K LV+DEAD +L + F+ ++ I +P +
Sbjct: 145 IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILN--MDFETEVDKILKVIPRDRKTF 202
Query: 203 VVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSL 262
+ SATM+K + ++ + + +PVK V +++ ++QYY+ + + +K L + + L
Sbjct: 203 LFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSK-FKDTYLVYILNEL 261
Query: 263 TITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTD 322
+IFC+T + L F+ +HG M Q +R +N F++ +L++TD
Sbjct: 262 AGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATD 321
Query: 323 VWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIESH 382
V +RG+D+ + +V+N+DIP + ++YIHR+GR+ R GR G AI F+T+ + + IE
Sbjct: 322 VASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHL 381
Query: 383 YRIKIKPTPANLEEL 397
K+ P +E+
Sbjct: 382 IGKKLPGFPTQDDEV 396
>Hs17475661 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 240
Score = 188 bits (477), Expect = 1e-47
Identities = 108/230 (46%), Positives = 139/230 (59%), Gaps = 53/230 (23%)
Query: 144 VVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVVV 203
++ GTPGRV DM+ + L+ + K+ VLDEADE+L FK QI DIF L QVV+
Sbjct: 62 IIMGTPGRVSDMLNWRYLSPKYIKMFVLDEADEMLSHR--FKDQICDIFQMLNSNTQVVL 119
Query: 204 VSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLT 263
+SAT+ D+LE+TKKFM DP++ILV +KEE
Sbjct: 120 LSATIPSDVLEVTKKFMRDPIRILV-----------------KKEE-------------- 148
Query: 264 ITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDV 323
LT +F+VS+MHGDM Q+ERD VM ++RSG +RVLI+TD+
Sbjct: 149 --------------------LTLKDFTVSAMHGDMDQKERDVVMREYRSGSSRVLITTDL 188
Query: 324 WARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEER 373
RGIDVQQ+SLVINYD P N ENYIHRIGR G+FG KGVAIN + +++R
Sbjct: 189 LPRGIDVQQLSLVINYDPPTNRENYIHRIGRGGQFGHKGVAINMVAEDKR 238
>SPAC31A2.07c [A] KOG0337 ATP-dependent RNA helicase
Length = 848
Score = 187 bits (476), Expect = 2e-47
Identities = 118/398 (29%), Positives = 202/398 (50%), Gaps = 42/398 (10%)
Query: 22 SATFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGL 81
++ F+SM L LLR I+ GF+ P G+DV+ A++G+GKTA F I +
Sbjct: 68 ASNFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPM 127
Query: 82 LQAIDSK--SKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVS 139
++ + S + +AL+LSP RELA Q+ V+ + ++ + A GG +L++ +S
Sbjct: 128 IEHLKSTLANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLS 187
Query: 140 KNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTI 199
+V TPGR L + L + + + +V DEAD L +GF Q+ +I LP +
Sbjct: 188 GKPDIVVATPGRFLHLKVEMKLELSSIEYVVFDEADRLF--EMGFAAQLTEILHALPTSR 245
Query: 200 QVVVVSATMSKDILEITKKFMSDPVKI-LVKRDEISLDVIKQYYVDVEKEEWKFDTLCDL 258
Q ++ SAT+ + +++ K + DPV + L ++S D ++ + V+ E + LC L
Sbjct: 246 QTLLFSATLPRTLVDFAKAGLQDPVLVRLDVESKVSAD-LQSAFFSVKTAEREAALLCIL 304
Query: 259 YDSLTI------------------------------------TQCVIFCNTRKKVDWLSR 282
D + + ++F T+ V+++S
Sbjct: 305 QDIIKLPLKDNVRPREIGNVNNPKKRKRALELALKGSESGSPDSTLVFVPTKHHVEYVSE 364
Query: 283 KLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIP 342
L Q +SVS ++G + QE R +N+FR GK +L+ TDV +RGID+ ++ VINYD P
Sbjct: 365 LLVQAGYSVSKIYGSLDQEARLNEINNFRLGKTNLLVVTDVASRGIDIPLLANVINYDFP 424
Query: 343 DNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIE 380
+ ++HR+GR+ R GR G A + + E+ L +++
Sbjct: 425 PQPKVFVHRVGRTARAGRTGWAYSLVRAEDAGYLLDLQ 462
>SPBC17D1.06 [A] KOG0331 ATP-dependent RNA helicase
Length = 578
Score = 187 bits (475), Expect = 2e-47
Identities = 131/384 (34%), Positives = 201/384 (52%), Gaps = 20/384 (5%)
Query: 25 FESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQA 84
F+ +++ L G+ Y + P G+DV+ A++G+GKT F I LQ
Sbjct: 169 FDELDVSAKLREGLKNY--KEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQY 226
Query: 85 IDSKSKEL---QALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKN 141
++ S + LV+SPTRELA Q+ +++L N+ A GG A + + + +KN
Sbjct: 227 LNGLSDNKSVPRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGG-APKSEQARAAKN 285
Query: 142 CQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLP-PTI- 199
V+ GTPGR+LD+I ++ LVLDEAD +L GF+Q I +I + P PT
Sbjct: 286 ASVIIGTPGRLLDLINDGSIDCSQVGYLVLDEADRMLDT--GFEQDIRNIISHTPDPTRN 343
Query: 200 ---QVVVVSATMSKDILEITKKFMSDPVKILVKRDEIS----LDVIKQYYVDVEKEEWKF 252
Q V SAT + + + F+ DPVKI + DE++ + I + D +E
Sbjct: 344 GSRQTVFFSATWPESVRALAATFLKDPVKITIGSDELAASQNITQIVEILDDPRSKERML 403
Query: 253 DTLC--DLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDF 310
D L L + +IF +K+ + L + ++V +HGDM Q R Q +NDF
Sbjct: 404 DNLLRKHLSSGGKDDKILIFVLYKKEAARVEGTLAR-KYNVVGIHGDMSQGARLQALNDF 462
Query: 311 RSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITK 370
+SGK VL++TDV ARG+D+ ++ LVIN P +E+Y+HRIGR+GR KG AI F T
Sbjct: 463 KSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVHRIGRTGRANTKGTAITFFTP 522
Query: 371 EERPKLKEIESHYRIKIKPTPANL 394
+++ E+ + R + P L
Sbjct: 523 QDKSHAGELVNVLRQAKQDIPEGL 546
>YHR065c [A] KOG0330 ATP-dependent RNA helicase
Length = 543
Score = 187 bits (474), Expect = 3e-47
Identities = 110/360 (30%), Positives = 190/360 (52%), Gaps = 7/360 (1%)
Query: 24 TFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQ 83
+F +NL P+L++ + P G D+I AQ+G+GKTA F I +L
Sbjct: 124 SFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILN 183
Query: 84 AIDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQ 143
+ + A +L+PTRELA Q + +LG + V + GG + + + +
Sbjct: 184 RLWHDQEPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH 243
Query: 144 VVSGTPGRVLDMIKR-QVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQ-- 200
++ TPGR++D ++ + ++R K LV+DEAD LL G + D K+ PT +
Sbjct: 244 IIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFG---PVLDRILKIIPTQERT 300
Query: 201 VVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYD 260
+ SATM+ I ++ + +++PVK V ++D + Q + V K L L +
Sbjct: 301 TYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLM-VVPGGLKNTYLIYLLN 359
Query: 261 SLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLIS 320
+IF T+ + LS FS +++HGD+ Q +R ++ F++GK +L++
Sbjct: 360 EFIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDLFKAGKRSILVA 419
Query: 321 TDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIE 380
TDV ARG+D+ + +V+NYDIP + ++YIHR+GR+ R GR G +I+ +++ + + IE
Sbjct: 420 TDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIE 479
>Hs21071032 [A] KOG0341 DEAD-box protein abstrakt
Length = 622
Score = 186 bits (473), Expect = 4e-47
Identities = 117/362 (32%), Positives = 188/362 (51%), Gaps = 20/362 (5%)
Query: 24 TFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQ 83
+F+ M +LRG+ G +P G+D+I A +G+GKT FT+ ++
Sbjct: 182 SFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 241
Query: 84 AIDSKSKELQ--------ALVLSPTRELASQSESVISNLGDYLN------VTAHACTGGK 129
+ K L L++ P+RELA Q+ ++ L + C GG
Sbjct: 242 FCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGM 301
Query: 130 ALQQDIKKVSKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIY 189
++++ ++ + ++ TPGR++D+++++++++ C+ L LDEAD ++ +GF+ I
Sbjct: 302 SVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMID--MGFEGDIR 359
Query: 190 DIFTKLPPTIQVVVVSATMSKDILEITKKFMSDPVKILVKR-DEISLDVIKQYYVDVEKE 248
IF+ Q ++ SATM K I K + PV I V R SLDVI++ V+ KE
Sbjct: 360 TIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQE--VEYVKE 417
Query: 249 EWKFDTLCDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMN 308
E K L + T +IF + VD + L ++HG QEER + +
Sbjct: 418 EAKMVYLLECLQK-TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIE 476
Query: 309 DFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFI 368
FR GK VL++TDV ++G+D I VINYD+P+ +ENY+HRIGR+GR G G+A FI
Sbjct: 477 AFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFI 536
Query: 369 TK 370
K
Sbjct: 537 NK 538
>CE00337 [A] KOG0330 ATP-dependent RNA helicase
Length = 489
Score = 186 bits (473), Expect = 4e-47
Identities = 108/365 (29%), Positives = 190/365 (51%), Gaps = 4/365 (1%)
Query: 24 TFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQ 83
+F + + L G+ P GKDVI A++G+GKT F I +LQ
Sbjct: 45 SFAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQ 104
Query: 84 AIDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQ 143
++ + LVL+PTRELA Q LG + + A GG + +++
Sbjct: 105 SLLDHPQAFFCLVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMALARRPH 164
Query: 144 VVSGTPGRVLDMIKR-QVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVV 202
++ TPGR++D ++ + N++ K L++DEAD +L + F+ ++ I +P +
Sbjct: 165 IIVATPGRLVDHLENTKGFNLKALKFLIMDEADRILN--MDFEVELDKILKVIPRERRTY 222
Query: 203 VVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSL 262
+ SATM+K + ++ + + DP ++ V ++D +KQ+Y+ V + +K L L +
Sbjct: 223 LFSATMTKKVSKLERASLRDPARVSVSSRYKTVDNLKQHYIFVPNK-YKETYLVYLLNEH 281
Query: 263 TITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTD 322
++FC T ++ L Q +HG M QE+R +N F+S +L+ TD
Sbjct: 282 AGNSAIVFCATCATTMQIAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKAREILVCTD 341
Query: 323 VWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIESH 382
V ARG+D+ + +VINYD+P ++Y+HR+GR+ R GR G+AI +T+ + ++IE++
Sbjct: 342 VAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGIAITVVTQYDVEAYQKIEAN 401
Query: 383 YRIKI 387
K+
Sbjct: 402 LGKKL 406
>7294797 [A] KOG0339 ATP-dependent RNA helicase
Length = 791
Score = 185 bits (470), Expect = 9e-47
Identities = 110/360 (30%), Positives = 188/360 (51%), Gaps = 16/360 (4%)
Query: 24 TFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQ 83
+F L++ + + P G+D+I A++G+GKTA F +L
Sbjct: 270 SFGHFGFDEQLIKAVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPMLM 329
Query: 84 AIDSKSKELQ------ALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKK 137
+ + K+L+ L+L+PTREL+ Q + G N+ C GG + + K
Sbjct: 330 HVMDQ-KQLKPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQSKA 388
Query: 138 VSKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPP 197
+ + +++ TPGR++DM+K + N+R LVLDEAD + +GF+ Q+ I + P
Sbjct: 389 LEQGAEIIVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFH--MGFEPQVRSICNHVRP 446
Query: 198 TIQVVVVSATMSKDILEITKKFMSDPVKILV-KRDEISLDVIKQYYV---DVEKEEWKFD 253
Q ++ SAT K I + + +SDPV+I+ +E + D+ + YV ++K W
Sbjct: 447 DRQCLMFSATFKKRIERLARDVLSDPVRIVQGDLNEANQDITQSVYVFPNPLQKWNW--- 503
Query: 254 TLCDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSG 313
LC L L+ +IF + + +S L ++ +HGDM Q +R++V+ F+
Sbjct: 504 LLCHLVKFLSEGSVLIFVTKKVDAETVSNNLLIKEYNCLLLHGDMDQADRNKVITQFKRK 563
Query: 314 KARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEER 373
+ +L++TDV ARG+D+ I V+NYD ++E + HRIGR+GR G KG A +T +++
Sbjct: 564 ECDILVATDVAARGLDIPHIRNVVNYDTARDIETHTHRIGRTGRAGEKGNAYTLVTDKDK 623
>CE28031 [A] KOG0334 RNA helicase
Length = 747
Score = 184 bits (468), Expect = 2e-46
Identities = 116/347 (33%), Positives = 190/347 (54%), Gaps = 17/347 (4%)
Query: 43 FEY--PXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQAIDSKSKELQ------A 94
FEY P G+DVI A++G+GKT F + + + I + EL+ A
Sbjct: 322 FEYSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHILDQP-ELEEGDGPIA 380
Query: 95 LVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQVVSGTPGRVLD 154
++L+PTRELA Q+ + L + GG + + I + + ++V TPGR++D
Sbjct: 381 VILAPTRELAMQTYKEANKFAKPLGLKVACTYGGVGISEQIADLKRGAEIVVCTPGRMID 440
Query: 155 MIKR---QVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVVVVSATMSKD 211
++ +V N+R LVLDEAD + + GF+ QI + + P Q V+ SAT +
Sbjct: 441 VLAANSGKVTNLRRVTYLVLDEADRMFDK--GFEPQIMKVVNNIRPDKQTVLFSATFPRH 498
Query: 212 ILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLTIT-QCVIF 270
+ + +K + PV+ILV + I Q V + E KF L +L ++F
Sbjct: 499 MEALARKVLDKPVEILVGGKSVVCSDITQNAV-ICAEHQKFLKLLELLGMYYEEGSSIVF 557
Query: 271 CNTRKKVDWLSRKLTQTNF-SVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGID 329
+ ++K D + +L +T + SV+ +HG + Q +RD + DF++G +VL++T V ARG+D
Sbjct: 558 VDKQEKADDIVDQLMRTGYNSVAPLHGGIDQHDRDSSIADFKTGVIKVLVATSVAARGLD 617
Query: 330 VQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKL 376
V+ + LV+NYD P++ E+Y+HR+GR+GR GRKG A F+ E + K+
Sbjct: 618 VKNLILVVNYDCPNHYEDYVHRVGRTGRAGRKGYAYTFVLPEHQEKM 664
>CE27427 [A] KOG0334 RNA helicase
Length = 970
Score = 184 bits (468), Expect = 2e-46
Identities = 116/347 (33%), Positives = 190/347 (54%), Gaps = 17/347 (4%)
Query: 43 FEY--PXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQAIDSKSKELQ------A 94
FEY P G+DVI A++G+GKT F + + + I + EL+ A
Sbjct: 322 FEYSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHILDQP-ELEEGDGPIA 380
Query: 95 LVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQVVSGTPGRVLD 154
++L+PTRELA Q+ + L + GG + + I + + ++V TPGR++D
Sbjct: 381 VILAPTRELAMQTYKEANKFAKPLGLKVACTYGGVGISEQIADLKRGAEIVVCTPGRMID 440
Query: 155 MIKR---QVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVVVVSATMSKD 211
++ +V N+R LVLDEAD + + GF+ QI + + P Q V+ SAT +
Sbjct: 441 VLAANSGKVTNLRRVTYLVLDEADRMFDK--GFEPQIMKVVNNIRPDKQTVLFSATFPRH 498
Query: 212 ILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLTIT-QCVIF 270
+ + +K + PV+ILV + I Q V + E KF L +L ++F
Sbjct: 499 MEALARKVLDKPVEILVGGKSVVCSDITQNAV-ICAEHQKFLKLLELLGMYYEEGSSIVF 557
Query: 271 CNTRKKVDWLSRKLTQTNF-SVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGID 329
+ ++K D + +L +T + SV+ +HG + Q +RD + DF++G +VL++T V ARG+D
Sbjct: 558 VDKQEKADDIVDQLMRTGYNSVAPLHGGIDQHDRDSSIADFKTGVIKVLVATSVAARGLD 617
Query: 330 VQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKL 376
V+ + LV+NYD P++ E+Y+HR+GR+GR GRKG A F+ E + K+
Sbjct: 618 VKNLILVVNYDCPNHYEDYVHRVGRTGRAGRKGYAYTFVLPEHQEKM 664
>7298204 [A] KOG0335 ATP-dependent RNA helicase
Length = 661
Score = 184 bits (467), Expect = 2e-46
Identities = 112/357 (31%), Positives = 195/357 (54%), Gaps = 15/357 (4%)
Query: 25 FESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQA 84
F S +L+ ++ + G++ P G+D++A AQ+G+GKTA F + +L
Sbjct: 247 FTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSK 306
Query: 85 IDSKSKEL-----QALVLSPTRELASQ--SESVISNLGDYLNVTAHACTGGKALQQDIKK 137
+ EL Q +++SPTRELA Q +E+ YL + GG + + +
Sbjct: 307 LLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGI--VYGGTSFRHQNEC 364
Query: 138 VSKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLP- 196
+++ C VV TPGR+LD + R + + + +VLDEAD +L +GF + + I T +
Sbjct: 365 ITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLD--MGFSEDMRRIMTHVTM 422
Query: 197 -PTIQVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTL 255
P Q ++ SAT ++I + +F+ + V + + + +KQ +V K + +
Sbjct: 423 RPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLI 482
Query: 256 CDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKA 315
L + T ++F T++ D+L+ L++ F +S+HGD Q +R+Q + DF++G
Sbjct: 483 EILSEQADGT--IVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSM 540
Query: 316 RVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEE 372
+VLI+T V +RG+D++ I VINYD+P +++Y+HRIGR+GR G G A +F E+
Sbjct: 541 KVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEK 597
>At5g60990 [A] KOG0330 ATP-dependent RNA helicase
Length = 454
Score = 184 bits (466), Expect = 3e-46
Identities = 126/390 (32%), Positives = 200/390 (50%), Gaps = 18/390 (4%)
Query: 21 VSATFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIG 80
V TF + ++ +L++ G++ P GKDVI AQ+G+GKT F I
Sbjct: 7 VVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIP 66
Query: 81 LLQAI-----DSKSKELQ-------ALVLSPTRELASQSESVISNLGDYLNVTAHACTGG 128
+LQA+ DS+ K+ + A VLSPTRELA Q LG +++ GG
Sbjct: 67 ILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGG 126
Query: 129 KALQQDIKKVSKNCQVVSGTPGRVLD-MIKRQVLNVRNCKILVLDEADELLGETLGFKQQ 187
Q + K V TPGR+ D M + ++++ K LVLDEAD LL E F++
Sbjct: 127 IDRMQQTIALGKRPHVA--TPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNED--FEKS 182
Query: 188 IYDIFTKLPPTIQVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEK 247
+ I ++P + + SATM+K + ++ + + +PVKI ++D +KQ Y V
Sbjct: 183 LNQILEEIPLERKTFLFSATMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQQYRFVAA 242
Query: 248 EEWKFDTLCDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVM 307
+ +K L + + + +IF T +L+ L F + G M Q +R +
Sbjct: 243 K-YKDCYLVYILSEMPESTSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGAL 301
Query: 308 NDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINF 367
N F++G+ +L+ TDV +RG+D+ + +VINYDIP N ++YIHR+GR+ R GR GV I+
Sbjct: 302 NKFKAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISL 361
Query: 368 ITKEERPKLKEIESHYRIKIKPTPANLEEL 397
+ + E +IE K+ PA +E+
Sbjct: 362 VNQYELEWYIQIEKLIGKKLPEYPAEEDEV 391
>YGL078c [A] KOG0331 ATP-dependent RNA helicase
Length = 523
Score = 183 bits (465), Expect = 3e-46
Identities = 113/324 (34%), Positives = 192/324 (58%), Gaps = 14/324 (4%)
Query: 60 GKDVIAQAQSGTGKTATFTIGLLQAI--DSKSKELQALVLSPTRELASQSESVISNLGDY 117
GKDV+ A++G+GKT F + + + D K + +Q LV+SPTRELASQ + L D
Sbjct: 149 GKDVVGVAETGSGKTFAFGVPAISHLMNDQKKRGIQVLVISPTRELASQIYDNLIVLTDK 208
Query: 118 LNVTAHACTGGKALQQDIKKVS-KNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADE 176
+ + GG + +D +++ K QVV TPGR+LD+++ +++ LVLDEAD
Sbjct: 209 VGMQCCCVYGG--VPKDEQRIQLKKSQVVVATPGRLLDLLQEGSVDLSQVNYLVLDEADR 266
Query: 177 LLGETLGFKQQIYDIFTKLPPTI-QVVVVSATMSKDILEITKKFMSDPVKILV-KRDEIS 234
+L + GF++ I +I + + Q ++ +AT K++ E+ FM++P+K+ + D+++
Sbjct: 267 MLEK--GFEEDIKNIIRETDASKRQTLMFTATWPKEVRELASTFMNNPIKVSIGNTDQLT 324
Query: 235 LDV-IKQYY--VDVEKEEWKFDTLCDLYDS--LTITQCVIFCNTRKKVDWLSRKLTQTNF 289
+ I Q VD +E K L Y S + +IF +K+ + R L +
Sbjct: 325 ANKRITQIVEVVDPRGKERKLLELLKKYHSGPKKNEKVLIFALYKKEAARVERNLKYNGY 384
Query: 290 SVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYI 349
+V+++HGD+ Q++R Q +N+F+SGK+ +L++TDV ARG+D+ + VIN P +E+Y+
Sbjct: 385 NVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYV 444
Query: 350 HRIGRSGRFGRKGVAINFITKEER 373
HRIGR+GR G+ G A T++E+
Sbjct: 445 HRIGRTGRAGQTGTAHTLFTEQEK 468
>Hs4759278 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 820
Score = 183 bits (465), Expect = 3e-46
Identities = 112/392 (28%), Positives = 198/392 (49%), Gaps = 38/392 (9%)
Query: 24 TFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLL- 82
+++ +L P +L I G++ P +D+I A++G+GKTA F I LL
Sbjct: 392 SWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLV 451
Query: 83 --------QAIDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQD 134
I+ + A++L+PTRELA Q E G L + A GG + +
Sbjct: 452 WITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQ 511
Query: 135 IKKVSKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTK 194
++ C++V TPGR++D+++ + L + C +VLDEAD ++ +GF+ + I
Sbjct: 512 GFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMI--DMGFEPDVQKILEH 569
Query: 195 LPPT--------------------------IQVVVVSATMSKDILEITKKFMSDPVKILV 228
+P + Q V+ +ATM + + + ++ P + +
Sbjct: 570 MPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYI 629
Query: 229 KRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTN 288
+ ++Q V + E K L + + +IF N +K D L++ L +
Sbjct: 630 GSAGKPHERVEQ-KVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMG 688
Query: 289 FSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENY 348
++ ++HG QE+R+ +++ ++G +L++TDV RGID+Q +S+V+NYD+ N+E+Y
Sbjct: 689 YNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDY 748
Query: 349 IHRIGRSGRFGRKGVAINFITKEERPKLKEIE 380
IHRIGR+GR G+ GVAI F+TKE+ E++
Sbjct: 749 IHRIGRTGRAGKSGVAITFLTKEDSAVFYELK 780
>Hs17474597 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 820
Score = 183 bits (465), Expect = 3e-46
Identities = 112/392 (28%), Positives = 198/392 (49%), Gaps = 38/392 (9%)
Query: 24 TFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLL- 82
+++ +L P +L I G++ P +D+I A++G+GKTA F I LL
Sbjct: 392 SWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLV 451
Query: 83 --------QAIDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQD 134
I+ + A++L+PTRELA Q E G L + A GG + +
Sbjct: 452 WITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQ 511
Query: 135 IKKVSKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTK 194
++ C++V TPGR++D+++ + L + C +VLDEAD ++ +GF+ + I
Sbjct: 512 GFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMI--DMGFEPDVQKILEH 569
Query: 195 LPPT--------------------------IQVVVVSATMSKDILEITKKFMSDPVKILV 228
+P + Q V+ +ATM + + + ++ P + +
Sbjct: 570 MPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYI 629
Query: 229 KRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTN 288
+ ++Q V + E K L + + +IF N +K D L++ L +
Sbjct: 630 GSAGKPHERVEQ-KVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMG 688
Query: 289 FSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENY 348
++ ++HG QE+R+ +++ ++G +L++TDV RGID+Q +S+V+NYD+ N+E+Y
Sbjct: 689 YNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDY 748
Query: 349 IHRIGRSGRFGRKGVAINFITKEERPKLKEIE 380
IHRIGR+GR G+ GVAI F+TKE+ E++
Sbjct: 749 IHRIGRTGRAGKSGVAITFLTKEDSAVFYELK 780
>YOR204w [A] KOG0335 ATP-dependent RNA helicase
Length = 604
Score = 183 bits (464), Expect = 4e-46
Identities = 122/366 (33%), Positives = 189/366 (51%), Gaps = 22/366 (6%)
Query: 25 FESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQA 84
F S L LL I F P G+D++A AQ+G+GKT F +L
Sbjct: 144 FTSPPLDGLLLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSE 203
Query: 85 I----DSKSKELQ-----------ALVLSPTRELASQSESVISNLGDYLNVTAHACTGGK 129
S E Q A++++PTRELA+Q V A GG
Sbjct: 204 SFKTGPSPQPESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGS 263
Query: 130 ALQQDIKKVSKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIY 189
+ ++++ + C ++ TPGR+ D+++R +++ N K LVLDEAD +L +GF+ QI
Sbjct: 264 PIGNQLREIERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLD--MGFEPQIR 321
Query: 190 DIFTKLPPTI----QVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDV 245
I T Q ++ SAT DI + + F+SD + + V R + + I Q + V
Sbjct: 322 HIVEDCDMTPVGERQTLMFSATFPADIQHLARDFLSDYIFLSVGRVGSTSENITQKVLYV 381
Query: 246 EKEEWKFDTLCDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQ 305
E ++ K L DL + T +IF T++ D L+ L NF +++HGD Q ER++
Sbjct: 382 ENQDKK-SALLDLLSASTDGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERER 440
Query: 306 VMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAI 365
+ FRSG A +L++T V ARG+D+ ++ VINYD+P ++++Y+HRIGR+GR G G+A
Sbjct: 441 ALAAFRSGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLAT 500
Query: 366 NFITKE 371
F E
Sbjct: 501 AFFNSE 506
>Hs19743937 [A] KOG0338 ATP-dependent RNA helicase
Length = 796
Score = 182 bits (463), Expect = 6e-46
Identities = 108/371 (29%), Positives = 197/371 (52%), Gaps = 8/371 (2%)
Query: 24 TFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQ 83
+F+ MNL LL+ I GF+ P GKD+ A A +GTGKTA F + +L+
Sbjct: 219 SFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLE 278
Query: 84 AIDSKSKEL---QALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSK 140
+ K ++ + LVL PTREL Q SV L + N+T GG ++ +
Sbjct: 279 RLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRA 338
Query: 141 NCQVVSGTPGRVLDMIKR-QVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTI 199
++ TPGR++D + ++ + ++L+LDEAD +L E F++Q+ +I
Sbjct: 339 APDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEY--FEEQMKEIIRMCSHHR 396
Query: 200 QVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVE-KEEWKFDTLCDL 258
Q ++ SATM+ ++ ++ + +PV+I V + ++Q ++ + E + +
Sbjct: 397 QTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAA 456
Query: 259 YDSLTITQCV-IFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARV 317
+ T T V +F T+K+ + L V +HG++ Q +R + + F+ + +
Sbjct: 457 LLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDI 516
Query: 318 LISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLK 377
L++TDV ARG+D++ + VIN+ +P+ +++Y+HR+GR+ R GR G +++ + ++ER LK
Sbjct: 517 LVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLK 576
Query: 378 EIESHYRIKIK 388
EI + +K
Sbjct: 577 EIVKAAKAPVK 587
>Hs9507237 [A] KOG0335 ATP-dependent RNA helicase
Length = 724
Score = 181 bits (459), Expect = 2e-45
Identities = 122/392 (31%), Positives = 207/392 (52%), Gaps = 22/392 (5%)
Query: 24 TFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQ 83
TFE NL L I G+ G+D++A AQ+G+GKTA F + +L
Sbjct: 289 TFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILA 348
Query: 84 AI------DSKSKELQ---ALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQD 134
+ S+ KELQ ++++PTREL +Q V A GG L
Sbjct: 349 HMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHS 408
Query: 135 IKKVSKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTK 194
I+++ + C ++ TPGR++D+I ++ + ++ K LVLDEAD +L G + +
Sbjct: 409 IRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPG 468
Query: 195 LPPTIQ--VVVVSATMSKDILEITKKFM-SDPVKILVKRDEISLDVIKQYYVDVEKEEWK 251
+P Q ++ SAT ++I + +F+ S+ + + V + + ++Q + V + K
Sbjct: 469 MPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFS-K 527
Query: 252 FDTLCDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFR 311
+ L ++ ++ + ++F T+KK D+++ L Q S +S+HGD +Q ER+Q + DFR
Sbjct: 528 REKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFR 587
Query: 312 SGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKE 371
GK VL++T V ARG+D++ + VIN+D+P ++ Y+HRIGR+GR G G AI+F E
Sbjct: 588 FGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLE 647
Query: 372 E-----RPKLKEIESHYRIKIKPTPANLEELS 398
+P +K + + PA LEE++
Sbjct: 648 SDNHLAQPLVKVLTDAQ----QDVPAWLEEIA 675
>Hs13514813 [A] KOG0335 ATP-dependent RNA helicase
Length = 662
Score = 181 bits (459), Expect = 2e-45
Identities = 118/337 (35%), Positives = 186/337 (55%), Gaps = 34/337 (10%)
Query: 61 KDVIAQAQSGTGKTATFTIGLLQAI--DSKSKELQA----------------LVLSPTRE 102
+D++A AQ+G+GKTA F + +L I D + L+A LVL+PTRE
Sbjct: 218 RDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRE 277
Query: 103 LASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQVVSGTPGRVLDMIKRQVLN 162
LA Q V GG + Q I+ + + C ++ TPGR++DM++R +
Sbjct: 278 LAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIG 337
Query: 163 VRNCKILVLDEADELLGETLGFKQQIYDIFTK--LPP--TIQVVVVSATMSKDILEITKK 218
+ CK LVLDEAD +L +GF+ QI I + +PP ++ SAT K+I + +
Sbjct: 338 LDFCKYLVLDEADRMLD--MGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARD 395
Query: 219 FMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLY-----DSLTITQCVIFCNT 273
F+ + + + V R + + I Q V VE+ + K L DL DSLT+ +F T
Sbjct: 396 FLDEYIFLAVGRVGSTSENITQKVVWVEESD-KRSFLLDLLNATGKDSLTL----VFVET 450
Query: 274 RKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQI 333
+K D L L ++ +S+HGD Q +R++ ++ FRSGK+ +L++T V ARG+D+ +
Sbjct: 451 KKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNV 510
Query: 334 SLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITK 370
VIN+D+P ++E Y+HRIGR+GR G G+A +F +
Sbjct: 511 KHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNE 547
>At1g31970 [A] KOG0331 ATP-dependent RNA helicase
Length = 537
Score = 181 bits (459), Expect = 2e-45
Identities = 114/365 (31%), Positives = 192/365 (52%), Gaps = 15/365 (4%)
Query: 43 FEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQAIDSKSKEL---------Q 93
FE P G+D+I A++G+GKT F I + + K+K++
Sbjct: 134 FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPT 193
Query: 94 ALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQVVSGTPGRVL 153
LVLSPTRELA Q V+ G+ + + GG + I + +V GTPGR+
Sbjct: 194 CLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGRLR 253
Query: 154 DMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVVVVSATMSKDIL 213
D+I+ VL + + +VLDEAD +L +GF++ + I + Q+V+ SAT D+
Sbjct: 254 DLIESNVLRLSDVSFVVLDEADRMLD--MGFEEPVRFILSNTNKVRQMVMFSATWPLDVH 311
Query: 214 EITKKFMS-DPVKILVKRDEISL--DVIKQYYV-DVEKEEWKFDTLCDLYDSLTITQCVI 269
++ ++FM +P+K+++ +++ DV++ V D + + L + Y + ++
Sbjct: 312 KLAQEFMDPNPIKVIIGSVDLAANHDVMQIIEVLDERARDQRLIALLEKYHKSQKNRVLV 371
Query: 270 FCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGID 329
F + + + L R L Q + S+HG+ Q ER + ++ F+ G +L++TDV ARG+D
Sbjct: 372 FALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGLD 431
Query: 330 VQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIESHYRIKIKP 389
+ + +VINY P E+Y+HRIGR+GR G+KGVA F T + E+ + R +
Sbjct: 432 IPDVEVVINYTFPLTTEDYVHRIGRTGRAGKKGVAHTFFTPLNKGLAGELVNVLREAGQV 491
Query: 390 TPANL 394
PA+L
Sbjct: 492 VPADL 496
>7296891 [A] KOG0341 DEAD-box protein abstrakt
Length = 619
Score = 181 bits (459), Expect = 2e-45
Identities = 118/391 (30%), Positives = 196/391 (49%), Gaps = 21/391 (5%)
Query: 24 TFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQ 83
+F M +L G+ G + P G+D+I A +G+GKT F + ++
Sbjct: 178 SFREMKFPKGILNGLAAKGIKNPTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVIM 237
Query: 84 AIDSKSKELQ--------ALVLSPTRELASQSESVISNLGDYLN------VTAHACTGGK 129
+ L L++ P+RELA Q+ +I + +L + + GG
Sbjct: 238 FALEQEYSLPFERNEGPYGLIICPSRELAKQTHEIIQHYSKHLQACGMPEIRSCLAMGGL 297
Query: 130 ALQQDIKKVSKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIY 189
+ + + +S+ +V TPGR++DM+ +++L + C+ L +DEAD ++ +GF++ +
Sbjct: 298 PVSEALDVISRGVHIVVATPGRLMDMLDKKILTLDMCRYLCMDEADRMID--MGFEEDVR 355
Query: 190 DIFTKLPPTIQVVVVSATMSKDILEITKKFMSDPVKILVKR-DEISLDVIKQYYVDVEKE 248
IF+ Q ++ SATM K I + + PV I V R S++V +Q V+ K+
Sbjct: 356 TIFSFFKGQRQTLLFSATMPKKIQNFARSALVKPVTINVGRAGAASMNVTQQ--VEYVKQ 413
Query: 249 EWKFDTLCDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMN 308
E K L D T +IF ++ VD + L ++HG QEER + ++
Sbjct: 414 EAKVVYLLDCLQK-TAPPVLIFAEKKQDVDCIHEYLLLKGVEAVAIHGGKDQEERSRAVD 472
Query: 309 DFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFI 368
+R GK VL++TDV ++G+D + VINYD+PD++ENY+HRIGR+GR KG+A I
Sbjct: 473 AYRVGKKDVLVATDVASKGLDFPNVQHVINYDMPDDIENYVHRIGRTGRSNTKGLATTLI 532
Query: 369 TKEERPKLKEIESHYRIKIK-PTPANLEELS 398
K + H I+ K P L+EL+
Sbjct: 533 NKTTEQSVLLDLKHLLIEGKQEVPDFLDELA 563
>Hs13514809 [A] KOG0335 ATP-dependent RNA helicase
Length = 660
Score = 181 bits (458), Expect = 2e-45
Identities = 117/345 (33%), Positives = 189/345 (53%), Gaps = 32/345 (9%)
Query: 61 KDVIAQAQSGTGKTATFTIGLLQAI--DSKSKELQA----------------LVLSPTRE 102
+D++A AQ+G+GKTA F + +L I D + L+A LVL+PTRE
Sbjct: 216 RDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRE 275
Query: 103 LASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQVVSGTPGRVLDMIKRQVLN 162
LA Q V GG + Q I+ + + C ++ TPGR++DM++R +
Sbjct: 276 LAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIG 335
Query: 163 VRNCKILVLDEADELLGETLGFKQQIYDIFTK--LPP--TIQVVVVSATMSKDILEITKK 218
+ CK LVLDEAD +L +GF+ QI I + +PP ++ SAT K+I + +
Sbjct: 336 LDFCKYLVLDEADRMLD--MGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARD 393
Query: 219 FMSDPVKILVKRDEISLDVIKQYYV---DVEKEEWKFDTL-CDLYDSLTITQCVIFCNTR 274
F+ + + + V R + + I Q V D++K + D L DSLT+ +F T+
Sbjct: 394 FLDEYIFLAVGRVGSTSENITQKVVWVEDLDKRSFLLDILGATGSDSLTL----VFVETK 449
Query: 275 KKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQIS 334
K D L L ++ +S+HGD Q +R++ ++ FRSGK+ +L++T V ARG+D+ +
Sbjct: 450 KGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVR 509
Query: 335 LVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEI 379
VIN+D+P ++E Y+HRIGR+GR G G+A +F ++ K++
Sbjct: 510 HVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNMNITKDL 554
>At4g33370 [A] KOG0341 DEAD-box protein abstrakt
Length = 542
Score = 181 bits (458), Expect = 2e-45
Identities = 124/391 (31%), Positives = 194/391 (48%), Gaps = 28/391 (7%)
Query: 25 FESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQA 84
F M LLR + G +P G+D+I A +G+GKT F + ++
Sbjct: 99 FMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMI-- 156
Query: 85 IDSKSKELQ----------ALVLSPTRELASQSESVISNL------GDYLNVTAHACTGG 128
I + +E+ ALV+ P+RELA Q+ V+ Y + + C GG
Sbjct: 157 ILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGG 216
Query: 129 KALQQDIKKVSKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQI 188
++ + V K +V TPGR+ D++ ++ +++ C++L LDEAD L+ LGF+ I
Sbjct: 217 VDMRSQLDVVKKGVHIVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVD--LGFEDDI 274
Query: 189 YDIFTKLPPTIQVVVVSATMSKDILEITKKFMSDPVKILVKR-DEISLDVIKQYYVDVEK 247
+F Q ++ SATM I + PV + V R +LDVI++ V+ K
Sbjct: 275 RHVFDHFKSQRQTLLFSATMPAKIQIFATSALVKPVTVNVGRAGAANLDVIQE--VEYVK 332
Query: 248 EEWKFDTLCDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVM 307
+E K L + T +IFC + VD + L ++HG QE+RD +
Sbjct: 333 QEAKIVYLLECLQKTT-PPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAI 391
Query: 308 NDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINF 367
+ F++GK VL++TDV ++G+D I VINYD+P +ENY+HRIGR+GR G+ G+A F
Sbjct: 392 SLFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIATTF 451
Query: 368 ITKEERP----KLKEIESHYRIKIKPTPANL 394
I K + LK + + +I P A L
Sbjct: 452 INKNQSEITLLDLKHLLQEAKQRIPPVLAEL 482
>YLL008w [A] KOG0338 ATP-dependent RNA helicase
Length = 752
Score = 179 bits (455), Expect = 5e-45
Identities = 114/360 (31%), Positives = 194/360 (53%), Gaps = 11/360 (3%)
Query: 25 FESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQA 84
F S++L +L+G+ G+ P GKD+IA A +G+GKTA F I +++
Sbjct: 233 FNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIER 292
Query: 85 I---DSKSKELQALVLSPTRELASQSESVISNLGDYLN-VTAHACTGGKALQQDIKKVSK 140
+ +K + +VL PTRELA Q V + +++ +T GG L+Q + +
Sbjct: 293 LLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKS 352
Query: 141 NCQVVSGTPGRVLDMIKRQV-LNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTI 199
+V TPGR +D I+ NV + +ILV+DEAD +L E GF+ ++ +I LP
Sbjct: 353 RPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEE--GFQDELNEIMGLLPSNR 410
Query: 200 QVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEW-KFDTLCDL 258
Q ++ SATM+ I + + PV+I++ + + + Q +V + K + K L +L
Sbjct: 411 QNLLFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALLFNL 470
Query: 259 YDSLTIT---QCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKA 315
L T + V+F ++ L + SV +HG + QE+R +N F++ +
Sbjct: 471 IRKLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEV 530
Query: 316 RVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPK 375
VLI TD+ +RG+D+ +I +VINYD+P + E Y+HR+GR+ R GR+G ++ F+ + + +
Sbjct: 531 PVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDR 590
>YPL119c [A] KOG0335 ATP-dependent RNA helicase
Length = 617
Score = 179 bits (454), Expect = 6e-45
Identities = 123/396 (31%), Positives = 200/396 (50%), Gaps = 28/396 (7%)
Query: 25 FESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLL-- 82
F S L L+ I F P G+D++A AQ+G+GKT F L
Sbjct: 156 FSSPPLDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLFTE 215
Query: 83 -------------QAIDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGK 129
Q+ S+ ALVL+PTRELA+Q V GG
Sbjct: 216 LFRSGPSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEARKFTYRSWVRPCVVYGGA 275
Query: 130 ALQQDIKKVSKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIY 189
+ +++V + C ++ TPGR+ D+++R +++ N K LVLDEAD +L +GF+ QI
Sbjct: 276 PIGNQMREVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLD--MGFEPQIR 333
Query: 190 DIFTKLP-PTI---QVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQ---YY 242
I + P++ Q ++ SAT DI + + F+ + + + V R + + I Q Y
Sbjct: 334 HIVEECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRILYV 393
Query: 243 VDVEKEEWKFDTLCDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEE 302
D++K+ D L + LT+ IF T++ D L+ L NF +++HGD Q E
Sbjct: 394 DDMDKKSALLDLLSAEHKGLTL----IFVETKRMADQLTDFLIMQNFKATAIHGDRTQAE 449
Query: 303 RDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKG 362
R++ ++ F++ A +L++T V ARG+D+ ++ VINYD+P ++++Y+HRIGR+GR G G
Sbjct: 450 RERALSAFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTG 509
Query: 363 VAINFITKEERPKLKEIESHYRIKIKPTPANLEELS 398
VA +F + +K + + P L +LS
Sbjct: 510 VATSFFNSNNQNIVKGLMEILNEANQEVPTFLSDLS 545
>At3g58510 [A] KOG0335 ATP-dependent RNA helicase
Length = 603
Score = 179 bits (454), Expect = 6e-45
Identities = 107/324 (33%), Positives = 180/324 (55%), Gaps = 21/324 (6%)
Query: 61 KDVIAQAQSGTGKTATFTIGLLQAI----------DSKSKELQALVLSPTRELASQSESV 110
+D++A AQ+G+GKTA F ++ I S++ A++LSPTRELA Q
Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDE 248
Query: 111 ISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQVVSGTPGRVLDMIKRQVLNVRNCKILV 170
V GG + Q ++++ + C ++ TPGR+ D+++R ++++ + L
Sbjct: 249 AKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLA 308
Query: 171 LDEADELLGETLGFKQQIYDIFTKL--PP--TIQVVVVSATMSKDILEITKKFMSDPVKI 226
LDEAD +L +GF+ QI I ++ PP Q ++ SAT I + FMS+ + +
Sbjct: 309 LDEADRMLD--MGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFL 366
Query: 227 LVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLTITQCVIFCNTRKKVDWLSRKLTQ 286
V R S D+I Q V+ +E K L DL + TQ T++ D L L
Sbjct: 367 AVGRVGSSTDLITQR-VEFVQESDKRSHLMDLLHAQRETQD----KTKRGADTLENWLCM 421
Query: 287 TNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLE 346
F +S+HGD Q+ER+ + F++G+ +L++TDV ARG+D+ ++ V+N+D+P++++
Sbjct: 422 NEFPATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDID 481
Query: 347 NYIHRIGRSGRFGRKGVAINFITK 370
+Y+HRIGR+GR G+ G+A F +
Sbjct: 482 DYVHRIGRTGRAGKSGIATAFFNE 505
>CE26887 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 730
Score = 179 bits (453), Expect = 8e-45
Identities = 113/382 (29%), Positives = 193/382 (49%), Gaps = 37/382 (9%)
Query: 25 FESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQA 84
+E ++ + + G+ P +DVI A++G+GKTA F + LL
Sbjct: 303 WEEAGFPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLVW 362
Query: 85 IDSKSK-ELQ--------ALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDI 135
I S K E Q A++++PTRELA Q E + G L + + GG + +
Sbjct: 363 ITSLPKMERQEHRDLGPYAIIMAPTRELAQQIEEETNKFGKLLGIKTVSVIGGASREDQG 422
Query: 136 KKVSKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKL 195
K+ +VV TPGR+LD+++ + L + C ++LDEAD +L +GF+ + + +
Sbjct: 423 MKLRMGVEVVIATPGRLLDVLENRYLLLNQCTYVILDEADRMLD--MGFEPDVQKVLEYM 480
Query: 196 PPTI-------------------------QVVVVSATMSKDILEITKKFMSDPVKILVKR 230
P T Q V+ +ATMS I + ++++ P + +
Sbjct: 481 PDTNMKKDTDEFDNEEALMKGFSTREKYRQTVMFTATMSSAIERLARQYLRRPAVVHIGS 540
Query: 231 DEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFS 290
+ ++Q V + E+ K L ++ +S +IF N +K D LS+ LT+ F
Sbjct: 541 AGKPTERVEQV-VYMVPEDRKRKKLVEVLESQFQPPIIIFVNQKKGADMLSKGLTKLGFK 599
Query: 291 VSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIH 350
+ +HG Q++R+ + + G + +L++TDV RGIDV+ +SLV+NYD+ ++E+Y H
Sbjct: 600 PTVLHGGKGQDQREYALQALKEGTSDILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTH 659
Query: 351 RIGRSGRFGRKGVAINFITKEE 372
RIGR+GR G+ G AI F+T ++
Sbjct: 660 RIGRTGRAGKHGKAITFLTPDD 681
>CE24878 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 769
Score = 179 bits (453), Expect = 8e-45
Identities = 113/382 (29%), Positives = 193/382 (49%), Gaps = 37/382 (9%)
Query: 25 FESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQA 84
+E ++ + + G+ P +DVI A++G+GKTA F + LL
Sbjct: 303 WEEAGFPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLVW 362
Query: 85 IDSKSK-ELQ--------ALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDI 135
I S K E Q A++++PTRELA Q E + G L + + GG + +
Sbjct: 363 ITSLPKMERQEHRDLGPYAIIMAPTRELAQQIEEETNKFGKLLGIKTVSVIGGASREDQG 422
Query: 136 KKVSKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKL 195
K+ +VV TPGR+LD+++ + L + C ++LDEAD +L +GF+ + + +
Sbjct: 423 MKLRMGVEVVIATPGRLLDVLENRYLLLNQCTYVILDEADRMLD--MGFEPDVQKVLEYM 480
Query: 196 PPTI-------------------------QVVVVSATMSKDILEITKKFMSDPVKILVKR 230
P T Q V+ +ATMS I + ++++ P + +
Sbjct: 481 PDTNMKKDTDEFDNEEALMKGFSTREKYRQTVMFTATMSSAIERLARQYLRRPAVVHIGS 540
Query: 231 DEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFS 290
+ ++Q V + E+ K L ++ +S +IF N +K D LS+ LT+ F
Sbjct: 541 AGKPTERVEQV-VYMVPEDRKRKKLVEVLESQFQPPIIIFVNQKKGADMLSKGLTKLGFK 599
Query: 291 VSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIH 350
+ +HG Q++R+ + + G + +L++TDV RGIDV+ +SLV+NYD+ ++E+Y H
Sbjct: 600 PTVLHGGKGQDQREYALQALKEGTSDILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTH 659
Query: 351 RIGRSGRFGRKGVAINFITKEE 372
RIGR+GR G+ G AI F+T ++
Sbjct: 660 RIGRTGRAGKHGKAITFLTPDD 681
>Hs11321632 [A] KOG0339 ATP-dependent RNA helicase
Length = 709
Score = 178 bits (452), Expect = 1e-44
Identities = 102/323 (31%), Positives = 181/323 (55%), Gaps = 16/323 (4%)
Query: 60 GKDVIAQAQSGTGKTATFTIGLLQAIDSKSKELQ------ALVLSPTRELASQSESVISN 113
G+D+I A++G+GKTA F +L I + KEL+ A+++ PTREL Q +
Sbjct: 171 GRDMIGIAKTGSGKTAAFIWPMLIHIMDQ-KELEPGDGPIAVIVCPTRELCQQIHAECKR 229
Query: 114 LGDYLNVTAHACTGGKALQQDIKKVSKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDE 173
G N+ + A GG ++ + K + + ++V TPGR++D +K++ N++ LV DE
Sbjct: 230 FGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDE 289
Query: 174 ADELLGETLGFKQQIYDIFTKLPPTIQVVVVSATMSKDILEITKKFMSDPVKILV----K 229
AD + +GF+ Q+ I + + P Q ++ SAT K I ++ + + DP++++ +
Sbjct: 290 ADRMFD--MGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGE 347
Query: 230 RDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNF 289
+E +++ + K W L + S ++ ++F + + L+ L Q
Sbjct: 348 ANEDVTQIVEILHSGPSKWNWLTRRLVEFTSSGSV---LLFVTKKANAEELANNLKQEGH 404
Query: 290 SVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYI 349
++ +HGDM Q ER++V++DF+ VL++TDV ARG+D+ I VINYD+ +++ +
Sbjct: 405 NLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHT 464
Query: 350 HRIGRSGRFGRKGVAINFITKEE 372
HRIGR+GR G KGVA +T ++
Sbjct: 465 HRIGRTGRAGEKGVAYTLLTPKD 487
>7304081 [A] KOG0338 ATP-dependent RNA helicase
Length = 782
Score = 178 bits (451), Expect = 1e-44
Identities = 111/372 (29%), Positives = 191/372 (50%), Gaps = 9/372 (2%)
Query: 24 TFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQ 83
+F MNL L+R I G+ YP G+D+ A +GTGKTA + + L+
Sbjct: 158 SFYQMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLE 217
Query: 84 AIDSKSKELQA----LVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVS 139
+ + +A LVL PTREL +Q V L + + GG ++ +
Sbjct: 218 RLLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTTIDVGLAIGGLDVKAQEAVLR 277
Query: 140 KNCQVVSGTPGRVLDMIKRQV-LNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPT 198
+N +V TPGR++D IK + + ++L+LDEAD +L E F +Q+ +I T
Sbjct: 278 QNPDIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEY--FAEQMKEIINSCCKT 335
Query: 199 IQVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDV--EKEEWKFDTLC 256
Q ++ SATMS+ + ++ + P+K+ V ++ ++Q ++ + +KE + L
Sbjct: 336 RQTMLFSATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILA 395
Query: 257 DLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKAR 316
L C++F T+K+ L L +HG++ Q++R + + F+ +
Sbjct: 396 SLICRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQID 455
Query: 317 VLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKL 376
VLI+TDV ARG+D+ + VIN+ +P E+YIHR+GR+ R GR G++++ ++ER +
Sbjct: 456 VLIATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIV 515
Query: 377 KEIESHYRIKIK 388
K+I + IK
Sbjct: 516 KDIIKNAESTIK 527
>ECU10g0690 [A] KOG0345 ATP-dependent RNA helicase
Length = 463
Score = 177 bits (450), Expect = 2e-44
Identities = 116/342 (33%), Positives = 193/342 (55%), Gaps = 31/342 (9%)
Query: 60 GKDVIAQAQSGTGKTATFTIGLLQAI-DSKSKE---LQALVLSPTRELASQSESVISNLG 115
GKDV+ Q+ +GTGKT F +L I D K + + A+V++PTRELA Q I +
Sbjct: 41 GKDVVVQSPTGTGKTMAFLAPILSCIYDGKGRGRPGVTAVVITPTRELALQ----IREVA 96
Query: 116 DYLNVTAHACTGGKALQQDIKKVSKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEAD 175
+V GG ++++D K++ + + GTPGR+L+++ ++ + LVLDEAD
Sbjct: 97 GLFDVKCECFIGGMSIEEDYKRMKEEFSIAVGTPGRLLEIVGKETKKFSSLSHLVLDEAD 156
Query: 176 ELLGETLGFKQQIYDIFTKLPPTIQVVVVSATMSKDILEITKKFMSDPVKILVKRDEISL 235
+LLG GF++++ + KLP + SAT + + ++++ F+ +PV I V +E +
Sbjct: 157 KLLG--FGFEEKLMQLLAKLPRNRVTGLFSATRNDSVDKLSRVFLRNPVSINVGNNE--M 212
Query: 236 DVIKQYYVDVEKEEWKFDTLCDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNF-SVSSM 294
V +Y V E+ L L D +T +C++F T +VD+ S +++ F ++ +
Sbjct: 213 PVALEYIVVSPMEK-----LLVLMDIVTGRRCIVFFATCSEVDFFSGLVSRAGFGNICKI 267
Query: 295 HGDMKQEERDQVMNDF--RSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRI 352
HG + Q+ER++V +F R G +L TDV ARGID + + LV+++D+P + +HR
Sbjct: 268 HGKISQDERNRVYEEFFQRDG---LLFCTDVAARGIDFRGVDLVVHFDVPKEYSSIVHRS 324
Query: 353 GRSGRFGRKGVAINFITKEERP-----KLK---EIESHYRIK 386
GR+ R G KG ++ F+ ER KLK +ES YR+K
Sbjct: 325 GRTARNGSKGESVLFVMPNERAYVEFLKLKGIPAVESSYRMK 366
>SPCC63.11 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 662
Score = 177 bits (448), Expect = 3e-44
Identities = 105/377 (27%), Positives = 198/377 (51%), Gaps = 32/377 (8%)
Query: 25 FESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQA 84
+E L ++L+ + ++ P KD+I A++G+GKTA F I L+ A
Sbjct: 251 WEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIA 310
Query: 85 IDSKSKELQ---------ALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDI 135
I SK L A+VL+PTRELA Q + + + L + GG A ++
Sbjct: 311 I-SKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQS 369
Query: 136 KKVSKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKL 195
++S+ +V TPGR+LD ++R++ + C +V+DEAD +L +GF+ + I + L
Sbjct: 370 FQMSQGAHIVVATPGRLLDCLERRLFVLSQCTYVVMDEADRMLD--MGFEDDVNKILSSL 427
Query: 196 PPTI-------------------QVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLD 236
P + Q ++ SAT+ + + K ++ +PV + + ++D
Sbjct: 428 PSSNASEKDGSILATANSSSSRRQTIMFSATLPPRVANLAKSYLIEPVMLTIGNIGQAVD 487
Query: 237 VIKQYYVDVEKEEWKFDTLCDLYDSLTITQ-CVIFCNTRKKVDWLSRKLTQTNFSVSSMH 295
++Q + + K+ + ++ +S + +IF N ++ ++ ++++L + ++H
Sbjct: 488 RVEQRVEMISDDSKKWRRVEEILESNRFSPPIIIFVNLKRNIEAIAKQLNAIGWHAVTLH 547
Query: 296 GDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRS 355
G QE+R++ + R+ A +L++TD+ RGID+ +SLV+NY++ ++E+Y HRIGR+
Sbjct: 548 GSKSQEQRERAIEQLRNKTADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRIGRT 607
Query: 356 GRFGRKGVAINFITKEE 372
GR G+ G AI F+ E+
Sbjct: 608 GRAGKSGTAITFLGPED 624
>7298752 [A] KOG0330 ATP-dependent RNA helicase
Length = 507
Score = 177 bits (448), Expect = 3e-44
Identities = 102/322 (31%), Positives = 177/322 (54%), Gaps = 4/322 (1%)
Query: 60 GKDVIAQAQSGTGKTATFTIGLLQAIDSKSKELQALVLSPTRELASQSESVISNLGDYLN 119
GKDVI A++G+GKT F + +L A+ + ALVL+PTRELA Q LG +
Sbjct: 98 GKDVIGLAETGSGKTGAFALPILHALLENPQRYFALVLTPTRELAFQIGEQFEALGSGIG 157
Query: 120 VTAHACTGGKALQQDIKKVSKNCQVVSGTPGRVLDMIKRQV-LNVRNCKILVLDEADELL 178
+ GG + +++K ++ TPGR++D ++ N++ K LV+DEAD +L
Sbjct: 158 IKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRIL 217
Query: 179 GETLGFKQQIYDIFTKLPPTIQVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVI 238
+ F+ ++ I LP + + SATM+K + ++ + + DPVK+ V +++ +
Sbjct: 218 N--MDFEVELDKILKVLPRERRTFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQL 275
Query: 239 KQYYVDVEKEEWKFDTLCDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDM 298
+Q Y+ + + +K L + + L +IFC+T + L + +HG M
Sbjct: 276 QQSYLFIPVK-YKDVYLVHILNELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQM 334
Query: 299 KQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRF 358
Q +R +N F++ +LISTDV +RG+D+ + +V+N+DIP + ++YIHR+GR+ R
Sbjct: 335 SQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARA 394
Query: 359 GRKGVAINFITKEERPKLKEIE 380
GR G AI +++ + + IE
Sbjct: 395 GRSGKAITLVSQYDIELYQRIE 416
>YJL033w [A] KOG0343 RNA Helicase
Length = 770
Score = 176 bits (447), Expect = 4e-44
Identities = 111/388 (28%), Positives = 210/388 (53%), Gaps = 23/388 (5%)
Query: 25 FESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQA 84
F+ + + L+G+ F G DV+A A++G+GKT F + +++
Sbjct: 43 FKDLPISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVIEK 102
Query: 85 IDSKS----KELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSK 140
+ + L AL++SPTRELA Q V++ +G + + +A GGK ++ +++++S+
Sbjct: 103 LYREKWTEFDGLGALIISPTRELAMQIYEVLTKIGSHTSFSAGLVIGGKDVKFELERISR 162
Query: 141 NCQVVSGTPGRVLDMIKRQV-LNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTI 199
++ GTPGR+L + + V LN N ++LVLDEAD L +GFK+ + I + L P+
Sbjct: 163 -INILIGTPGRILQHLDQAVGLNTSNLQMLVLDEADRCLD--MGFKKTLDAIVSTLSPSR 219
Query: 200 QVVVVSATMSKDILEITKKFMSDPVKI--------LVKRDEISLDVIKQYYVDVEKEEWK 251
Q ++ SAT S+ + ++ + ++D + V ++ + + ++Q+Y++V + K
Sbjct: 220 QTLLFSATQSQSVADLARLSLTDYKTVGTHDVMDGSVNKEASTPETLQQFYIEVPLAD-K 278
Query: 252 FDTLCDLYDSLTITQCVIFCNTRKKVDWLSR--KLTQTNFSVSSMHGDMKQEERDQVMND 309
D L S + ++F ++ K+V ++ + Q S+ +HG KQ R + ++
Sbjct: 279 LDILFSFIKSHLKCKMIVFLSSSKQVHFVYETFRKMQPGISLMHLHGRQKQRARTETLDK 338
Query: 310 FRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFIT 369
F + L +TDV ARGID + V+ D P++++ YIHR+GR R+G+KG ++ +T
Sbjct: 339 FNRAQQVCLFATDVVARGIDFPAVDWVVQVDCPEDVDTYIHRVGRCARYGKKGKSLIMLT 398
Query: 370 KEERPK-LKEIESHYRIKIKPTPANLEE 396
+E+ LK + + KI+P N+++
Sbjct: 399 PQEQEAFLKRLNAR---KIEPGKLNIKQ 423
>CE28485 [K] KOG4284 DEAD box protein
Length = 963
Score = 176 bits (447), Expect = 4e-44
Identities = 99/315 (31%), Positives = 170/315 (53%), Gaps = 6/315 (1%)
Query: 62 DVIAQAQSGTGKTATFTIGLLQAIDSKSKELQALVLSPTRELASQSESVISNLGDYLNVT 121
D++ QA+SGTGKT F++ ++ +DS+S +Q ++++PTRE++ Q + + +
Sbjct: 51 DMLVQAKSGTGKTLVFSVLAVENLDSRSSHIQKVIVTPTREISVQIKETVRKVAP-TGAR 109
Query: 122 AHACTGGKALQQDIKKVSKNC-QVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGE 180
GG A + ++ + + Q+V GTPGR+ ++K +N+ + VLDEAD+L+ E
Sbjct: 110 TSVYVGGSAHKLNLIDLKQTRPQIVIGTPGRIAQLVKLGAMNMSHVDFFVLDEADKLMDE 169
Query: 181 TLGFKQQIYDIFTKLPPTIQVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQ 240
F+ I I LP QV V SAT +++ + F+ D + D++ L IKQ
Sbjct: 170 V--FRDDINIIINSLPQIRQVAVFSATYPRNLDNLLSTFLRDAALVRFNADDVQLFGIKQ 227
Query: 241 YYVDVEKEEWKFDTLCDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQ 300
Y V K + L + S+ Q ++FC+ K + ++ L + V+ + M Q
Sbjct: 228 YVV--AKCSPMLEKLTHVLKSIRYVQALVFCDQISKCEPIATHLKSSGLDVTFVSSAMSQ 285
Query: 301 EERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGR 360
++R ++ R+ + ++L+S+D+ ARGID ++LV+N D N E Y HRIGR+ RFG
Sbjct: 286 KDRQLAVDQLRAKRVKILVSSDLTARGIDADNVNLVVNIDAAANEETYFHRIGRAARFGA 345
Query: 361 KGVAINFITKEERPK 375
G A+ + E K
Sbjct: 346 HGAAVTLLEDERALK 360
>At5g51280 [A] KOG0341 DEAD-box protein abstrakt
Length = 591
Score = 176 bits (446), Expect = 5e-44
Identities = 117/391 (29%), Positives = 192/391 (48%), Gaps = 24/391 (6%)
Query: 25 FESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQA 84
F+ M +L + G P G+D+I A +G+GKT F + ++
Sbjct: 148 FKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMI 207
Query: 85 IDSKSKELQ--------ALVLSPTRELASQSESVISNL------GDYLNVTAHACTGGKA 130
+ + L++ P+RELA Q+ V+ Y + + C GG
Sbjct: 208 ALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGID 267
Query: 131 LQQDIKKVSKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYD 190
++ ++ V + +V TPGR+ DM+ ++ +++ C+ L LDEAD L+ LGF+ I +
Sbjct: 268 MRSQLEVVKRGVHIVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLVD--LGFEDDIRE 325
Query: 191 IFTKLPPTIQVVVVSATMSKDILEITKKFMSDPVKILVKR-DEISLDVIKQYYVDVEKEE 249
+F Q ++ SATM I + + PV + V R +LDVI++ V+ K+E
Sbjct: 326 VFDHFKSQRQTLLFSATMPTKIQIFARSALVKPVTVNVGRAGAANLDVIQE--VEYVKQE 383
Query: 250 WKFDTLCDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMND 309
K L + T +IFC + VD + L ++HG QE+R+ ++
Sbjct: 384 AKIVYLLECLQK-TSPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDREYAISS 442
Query: 310 FRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFIT 369
F++GK VL++TDV ++G+D I VINYD+P +ENY+HRIGR+GR G+ G+A FI
Sbjct: 443 FKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFIN 502
Query: 370 KEERP----KLKEIESHYRIKIKPTPANLEE 396
K + LK + + +I P A L +
Sbjct: 503 KNQSETTLLDLKHLLQEAKQRIPPVLAELND 533
>At2g42520 [A] KOG0335 ATP-dependent RNA helicase
Length = 633
Score = 176 bits (446), Expect = 5e-44
Identities = 106/329 (32%), Positives = 185/329 (56%), Gaps = 24/329 (7%)
Query: 60 GKDVIAQAQSGTGKTATFTIGLLQAIDSKSKELQ-----------ALVLSPTRELASQSE 108
G+D++A AQ+G+GKTA F ++ I K + +Q A++LSPTRELASQ
Sbjct: 196 GRDLMACAQTGSGKTAAFCFPIISGI-MKDQHVQRPRGSRTVYPLAVILSPTRELASQIH 254
Query: 109 SVISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQVVSGTPGRVLDMIKRQVLNVRNCKI 168
V GG + Q ++++ + ++ TPGR+ D+++R ++++ +
Sbjct: 255 DEAKKFSYQTGVKVVVAYGGTPINQQLRELERGVDILVATPGRLNDLLERARVSMQMIRF 314
Query: 169 LVLDEADELLGETLGFKQQIYDIFTKL--PP--TIQVVVVSATMSKDILEITKKFMSDPV 224
L LDEAD +L +GF+ QI I ++ PP Q ++ SAT ++I + F+++ +
Sbjct: 315 LALDEADRMLD--MGFEPQIRKIVEQMDMPPRGVRQTLLFSATFPREIQRLAADFLANYI 372
Query: 225 KILVKRDEISLDVIKQ---YYVDVEKEEWKFDTL-CDLYDSLTITQCV--IFCNTRKKVD 278
+ V R S D+I Q + +D +K D L + + Q + +F T++ D
Sbjct: 373 FLAVGRVGSSTDLIVQRVEFVLDSDKRSHLMDLLHAQRENGIQGKQALTLVFVETKRGAD 432
Query: 279 WLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVIN 338
L L F +S+HGD Q+ER+ + F+SG+ +L++TDV ARG+D+ ++ V+N
Sbjct: 433 SLENWLCINGFPATSIHGDRTQQEREVALKAFKSGRTPILVATDVAARGLDIPHVAHVVN 492
Query: 339 YDIPDNLENYIHRIGRSGRFGRKGVAINF 367
+D+P+++++Y+HRIGR+GR G+ G+A F
Sbjct: 493 FDLPNDIDDYVHRIGRTGRAGKSGLATAF 521
>ECU10g0440 [A] KOG0330 ATP-dependent RNA helicase
Length = 400
Score = 175 bits (444), Expect = 9e-44
Identities = 102/357 (28%), Positives = 181/357 (50%), Gaps = 5/357 (1%)
Query: 25 FESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQA 84
F + + L++ G P G DVIA +Q+G+GKT F + ++
Sbjct: 3 FGDLRIDESLIKTCQEKGITRPTEVQRQVIPAVLGGGDVIAVSQTGSGKTLAFVLPIVSH 62
Query: 85 IDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQV 144
+ K++ LV++PTREL+SQ N+ + GG ++SK V
Sbjct: 63 LLQKNRSFYCLVVAPTRELSSQIAECF-NMFQATGLRVCLLVGGANFNVQANQLSKRPHV 121
Query: 145 VSGTPGRVLD-MIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVVV 203
V GTPGR+ + ++K + + VLDEAD + F + + I L Q ++
Sbjct: 122 VVGTPGRIAEHVLKTKSFRTERVRKFVLDEADRFFEQD--FVEDLETIIPSLREKRQTLL 179
Query: 204 VSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLT 263
+ATMS +I +++ + P I ++ +K+YY+ V + WK L +L +
Sbjct: 180 FTATMSDEISKLSSSILKRPKTIRTAEKYETVPALKEYYLFVAMK-WKNSALVELLEMSQ 238
Query: 264 ITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDV 323
++F + +S L + F ++HG++ QE+R++ M F+ + VL+ TD+
Sbjct: 239 GMSVIVFVSMCVTARVMSLALARLGFCSEALHGELSQEKREEAMRSFKESRFNVLVCTDL 298
Query: 324 WARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIE 380
+RG+D+ + LVIN+D+P + ++YIHR+GR+ R GR G AI +T+ + ++++IE
Sbjct: 299 GSRGLDISHVDLVINFDVPKSGKDYIHRVGRTARAGRSGTAITLVTQYDVEQIQKIE 355
>CE23832 [A] KOG0341 DEAD-box protein abstrakt
Length = 630
Score = 175 bits (443), Expect = 1e-43
Identities = 111/327 (33%), Positives = 178/327 (53%), Gaps = 20/327 (6%)
Query: 60 GKDVIAQAQSGTGKTATFTIGLLQAIDSKSKELQ--------ALVLSPTRELASQSESVI 111
G+D+I A +G+GKT TF + L+ + +L L++ P+RELA Q +I
Sbjct: 227 GRDMIGIASTGSGKTMTFVLPLVMFCLEQEMKLPFMRSEGPFGLIIVPSRELARQIFDLI 286
Query: 112 SNLGDYLN------VTAHACTGGKALQQDIKKVSKNCQVVSGTPGRVLDMIKRQVLNVRN 165
+ D L + A C GG + + K V +V TPGR+ DM+ ++++N+
Sbjct: 287 IEMFDALGKAGLPEMRAGLCIGGVPIGEQAKDVRDGIHIVVATPGRLSDMLTKKIINLEV 346
Query: 166 CKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVVVVSATMSKDILEITKKFMSDPVK 225
C+ LVLDEAD +L +GF+ +I IF Q ++ SATM + I K + P+
Sbjct: 347 CRYLVLDEADRMLD--MGFEDEIKSIFYFFKAQRQTLLFSATMPRKIQFFAKSALVKPIV 404
Query: 226 ILVKR-DEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLTITQCVIFCNTRKKVDWLSRKL 284
+ V R SL+V+++ ++ + E K + + T + +IF + VD + L
Sbjct: 405 VNVGRAGAASLNVLQE--LEFVRSENKLVRVLECLQK-TSPKVLIFAEKKVDVDNIYEYL 461
Query: 285 TQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDN 344
V+S+HG Q +R + FR + VL++TDV ++G+D Q I VIN+D+P++
Sbjct: 462 LVKGVEVASIHGGKDQSDRHAGIEAFRKNEKDVLVATDVASKGLDFQGIEHVINFDMPED 521
Query: 345 LENYIHRIGRSGRFGRKGVAINFITKE 371
+ENY+HRIGR+GR GRKG+A FI K+
Sbjct: 522 IENYVHRIGRTGRSGRKGLATTFINKK 548
>Hs19923595 [A] KOG0337 ATP-dependent RNA helicase
Length = 882
Score = 174 bits (442), Expect = 2e-43
Identities = 109/362 (30%), Positives = 187/362 (51%), Gaps = 7/362 (1%)
Query: 22 SATFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGL 81
S F+SM L + +GI G++ P GKDV+A A++G+GKTA F + +
Sbjct: 95 SGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPM 154
Query: 82 LQAIDSKSKEL--QALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVS 139
+ + + S + +AL+LSPTRELA Q+ LG + + GG ++ +
Sbjct: 155 FERLKTHSAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALH 214
Query: 140 KNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTI 199
+N ++ TPGR++ + L +++ + +V DEAD L +GF +Q+ +I +LP
Sbjct: 215 ENPDIIIATPGRLVHVAVEMSLKLQSVEYVVFDEADRLF--EMGFAEQLQEIIARLPGGH 272
Query: 200 QVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLY 259
Q V+ SAT+ K ++E + +++PV I + D + +K + V +E+ K L L
Sbjct: 273 QTVLFSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFFLV-REDTKAAVLLHLL 331
Query: 260 DSLTITQ--CVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARV 317
++ Q V+F T+ ++L+ LT S + ++ + R + F GK
Sbjct: 332 HNVVRPQDQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCST 391
Query: 318 LISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLK 377
LI TD+ ARG+D+ + VINY P + ++HR+GR R GR G A + + +E P L
Sbjct: 392 LIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEIPYLL 451
Query: 378 EI 379
++
Sbjct: 452 DL 453
>CE27030 [A] KOG0338 ATP-dependent RNA helicase
Length = 763
Score = 174 bits (442), Expect = 2e-43
Identities = 111/389 (28%), Positives = 191/389 (48%), Gaps = 32/389 (8%)
Query: 21 VSATFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIG 80
V+ +FE MNL +L+ G+ P GKD+ A A +GTGKTA F +
Sbjct: 146 VNVSFEQMNLSRQILKACSGAGYSDPTPIQQACIPVALTGKDICACAATGTGKTAAFVLP 205
Query: 81 LLQAIDSKSKEL---QALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKK 137
+L+ + + K + LVL PTRELA Q V L ++ + C GG L+
Sbjct: 206 ILERMIYRPKGASCTRVLVLVPTRELAIQVFQVFRKLSTFIQLEVCLCAGGLDLKAQEAA 265
Query: 138 VSKNCQVVSGTPGRVLDMI-------------------------KRQVLNVRNCKILVLD 172
+ VV TPGR++D + R++ + N ++LVLD
Sbjct: 266 LRSGPDVVVATPGRLIDHLHNSPSFNLSNIEVFFKTPNIPPKKNSRKICKIPNFQVLVLD 325
Query: 173 EADELLGETLGFKQQIYDIFTKLPPTIQVVVVSATMSKDILEITKKFMSDPVKILVKRDE 232
EAD +L E F+ Q+ ++ Q ++ SATM+++I E+ + PVKI + +
Sbjct: 326 EADRMLEEA--FRDQMNELIRLCAQNRQTLLFSATMTEEIDELASMSLQKPVKIFINENT 383
Query: 233 ISLDVIKQYYVDVE--KEEWKFDTLCDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFS 290
+ ++Q ++ + +E + + L T ++F T+K + L
Sbjct: 384 DTALKLRQEFIRIRAGRETDREAMVAALVTRTFQTNTIVFVRTKKDCQRMQILLGLLGIK 443
Query: 291 VSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIH 350
V M + Q +R + ++ F+ + VL+STD+ +RG+D++ + VIN ++P +++ YIH
Sbjct: 444 VGQMQSSLTQGQRIESLSKFKKAEIDVLVSTDLASRGLDIEGVQTVINMNMPKSIKQYIH 503
Query: 351 RIGRSGRFGRKGVAINFITKEERPKLKEI 379
R+GR+ R G+ G +I+ + ++ER LKEI
Sbjct: 504 RVGRTARAGKAGRSISLVGEDERKLLKEI 532
>SPAC823.08c [A] KOG0330 ATP-dependent RNA helicase
Length = 465
Score = 174 bits (441), Expect = 2e-43
Identities = 111/359 (30%), Positives = 182/359 (49%), Gaps = 4/359 (1%)
Query: 24 TFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQ 83
TF+ + + +L GF+ P +DVI AQ+G+GKTA F + ++Q
Sbjct: 47 TFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQ 106
Query: 84 AIDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQ 143
+ + A+VL+PTRELA Q +G + V + GG + +SK
Sbjct: 107 ELWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPH 166
Query: 144 VVSGTPGRVLDMIKR-QVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVV 202
V+ TPGR++D ++ + +++N K L++DEAD LL + F I I +P + +
Sbjct: 167 VLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLD--MDFGPIIDKILKIIPHERRTL 224
Query: 203 VVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSL 262
+ SATM+ + ++ + + PV++ V ++D + Q Y+ + K L L + L
Sbjct: 225 LFSATMTSKVEKLQRASLHQPVRVAVSSKFSTVDTLIQRYLFFPFKH-KDTYLVYLVNEL 283
Query: 263 TITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTD 322
+IF T L+ L FS +HG + Q R +N F+SG L++TD
Sbjct: 284 AGNSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGARSTLVATD 343
Query: 323 VWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIES 381
V ARG+D+ + +VINYDIP + + YIHR+GR+ R GR G +I +T+ + IE+
Sbjct: 344 VAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIALVTQYDLEPFLRIEA 402
>At3g58570 [A] KOG0335 ATP-dependent RNA helicase
Length = 646
Score = 174 bits (440), Expect = 3e-43
Identities = 114/382 (29%), Positives = 195/382 (50%), Gaps = 34/382 (8%)
Query: 24 TFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQ 83
TF ++L L I + P G+D++A AQ+G+GKTA F ++
Sbjct: 147 TFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIIS 206
Query: 84 AIDSKSKELQ-----------ALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQ 132
I K + ++ A++LSPTRELA Q V GG +
Sbjct: 207 GI-MKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVN 265
Query: 133 QDIKKVSKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIF 192
Q I+++ + ++ TPGR+ D+++R ++++ + L LDEAD +L +GF+ QI I
Sbjct: 266 QQIRELERGVDILVATPGRLNDLLERGRVSLQMVRFLALDEADRMLD--MGFEPQIRKIV 323
Query: 193 TKL---PPTI-QVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKE 248
++ PP + Q ++ SAT ++I + F+S+ + + V R S D+I Q V+ +
Sbjct: 324 QQMDMPPPGVRQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTDLIVQR-VEFVHD 382
Query: 249 EWKFDTLCDLY-----------DSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGD 297
K L DL +LT+ +F T+K D L L F +++HGD
Sbjct: 383 SDKRSHLMDLLHAQRENGNQGKQALTL----VFVETKKGADSLENWLCINGFPATTIHGD 438
Query: 298 MKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGR 357
Q+ER+ + F++G+ +L++TDV ARG+D+ ++ V+N+D+P+++++Y+HRIGR+GR
Sbjct: 439 RSQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGR 498
Query: 358 FGRKGVAINFITKEERPKLKEI 379
G G+A F K +
Sbjct: 499 AGNSGLATAFFNDNNTTMAKPL 520
>7291960_2 [A] KOG0337 ATP-dependent RNA helicase
Length = 883
Score = 174 bits (440), Expect = 3e-43
Identities = 110/362 (30%), Positives = 188/362 (51%), Gaps = 7/362 (1%)
Query: 22 SATFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGL 81
S F+SM L +L++GI G++ P G+DV+A A++G+GKTA F I L
Sbjct: 94 SGGFQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPL 153
Query: 82 LQAIDSK--SKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVS 139
+ + + +K +AL+LSPTRELA Q+ I LG ++ + + GG ++ +
Sbjct: 154 FEKLQRREPTKGARALILSPTRELAVQTYKFIKELGRFMELKSILVLGGDSMDSQFSAIH 213
Query: 140 KNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTI 199
V+ TPGR L + L + + + +V DEAD L +GF +Q+ + +LP +
Sbjct: 214 TCPDVIVATPGRFLHLCVEMDLKLNSIEYVVFDEADRLF--EMGFGEQLNETLHRLPSSR 271
Query: 200 QVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDL- 258
Q V+ SAT+ K ++E + ++DPV I + + D + ++ ++ ++ L L
Sbjct: 272 QTVMFSATLPKLLVEFARAGLNDPVLIRLDVESKLPDALALKFLYCRPDD-RYTALVVLL 330
Query: 259 -YDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARV 317
Y +Q V+F T+ V+ +S LT+ S +S++ + R F + K V
Sbjct: 331 KYVIPVQSQTVVFAGTQHHVELISYILTEAGISNASVYSSLDPAARKINTAKFVNKKVSV 390
Query: 318 LISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLK 377
LI TDV ARGID+ + V+N P + ++HR+GR R GR G A + ++ ++ L
Sbjct: 391 LIVTDVAARGIDIPSLDFVVNLHFPGKPKLFVHRVGRCARAGRTGTAYSIVSTDDTAHLL 450
Query: 378 EI 379
++
Sbjct: 451 DL 452
>Hs22057246 [A] KOG0336 ATP-dependent RNA helicase
Length = 631
Score = 172 bits (437), Expect = 6e-43
Identities = 106/355 (29%), Positives = 189/355 (52%), Gaps = 10/355 (2%)
Query: 32 PDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQAIDSK--S 89
PDLL+ I G P G D+I AQ+GTGKT ++ + +DS+ S
Sbjct: 231 PDLLKSIIRVGIVKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPIS 290
Query: 90 KELQ----ALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQVV 145
+E + LVL+PTRELA E+ S Y + + GG+ I+ +SK ++
Sbjct: 291 REQRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDII 349
Query: 146 SGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVVVVS 205
TPGR+ D+ +N+R+ LV+DEAD++L + F+ QI I + P Q V+ S
Sbjct: 350 IATPGRLNDLQMNNSVNLRSITYLVIDEADKMLD--MEFEPQIRKILLDVRPDRQTVMTS 407
Query: 206 ATMSKDILEITKKFMSDPVKILVKR-DEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLTI 264
AT + ++ ++ DP+ + V + ++++ +KQ + ++E + T + +
Sbjct: 408 ATWPDTVRQLALSYLKDPMIVYVGNLNLVAVNTVKQNIIVTTEKEKRALTQEFVENMSPN 467
Query: 265 TQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVW 324
+ ++F + + D LS S S+HG+ +Q ++++ + DF+SG ++LI+TD+
Sbjct: 468 DKVIMFVSQKHIADDLSSDFNIQGISAESLHGNSEQSDQERAVEDFKSGNIKILITTDIV 527
Query: 325 ARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEI 379
+RG+D+ ++ V NYD P N++ Y+HR+G GR G+ G ++ IT+ + E+
Sbjct: 528 SRGLDLNDVTHVYNYDFPRNIDVYVHRVGYIGRTGKTGTSVTLITQRDSKMAGEL 582
>YDR243c [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 588
Score = 172 bits (436), Expect = 8e-43
Identities = 110/358 (30%), Positives = 191/358 (52%), Gaps = 33/358 (9%)
Query: 61 KDVIAQAQSGTGKTATFTIGLLQAIDSKSKEL---------QALVLSPTRELASQSESVI 111
+D + A +G+GKT F I +L + +AL+L+PTREL Q +
Sbjct: 215 RDFLGVASTGSGKTLAFVIPILIKMSRSPPRPPSLKIIDGPKALILAPTRELVQQIQKET 274
Query: 112 SNLGDYLNVTAH------ACTGGKALQQDIKKVSKNCQVVSGTPGRVLDMIKRQVLNVRN 165
+ + ++ + GG +L++ +S+ C ++ TPGR++D ++ +L ++
Sbjct: 275 QKVTKIWSKESNYDCKVISIVGGHSLEEISFSLSEGCDILVATPGRLIDSLENHLLVMKQ 334
Query: 166 CKILVLDEADELLGETLGFKQQIYDIFTKLPPTI------QVVVVSATMSKDILEITKKF 219
+ LVLDEAD+++ LGF+ Q+ +I TK+ Q ++ +ATM+ I +I +
Sbjct: 335 VETLVLDEADKMID--LGFEDQVTNILTKVDINADSAVNRQTLMFTATMTPVIEKIAAGY 392
Query: 220 MSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDL---YDSLTITQCVIFCNTRKK 276
M PV + + S +I+Q + +E KF L + YD +IF N ++
Sbjct: 393 MQKPVYATIGVETGSEPLIQQVVEYADNDEDKFKKLKPIVAKYDP----PIIIFINYKQT 448
Query: 277 VDWLSRKLT-QTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISL 335
DWL+ K +TN V+ +HG QE+R+ + FR+ K +++I+T+V ARG+D+ +SL
Sbjct: 449 ADWLAEKFQKETNMKVTILHGSKSQEQREHSLQLFRTNKVQIMIATNVAARGLDIPNVSL 508
Query: 336 VINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIESHYRIKIKPTPAN 393
V+N+ I +++YIHRIGR+GR +G A++F++ E L I Y+ K P N
Sbjct: 509 VVNFQISKKMDDYIHRIGRTGRAANEGTAVSFVSAAEDESL--IRELYKYVRKHDPLN 564
>Hs13129006 [A] KOG0331 ATP-dependent RNA helicase
Length = 737
Score = 171 bits (433), Expect = 2e-42
Identities = 111/346 (32%), Positives = 185/346 (53%), Gaps = 24/346 (6%)
Query: 60 GKDVIAQAQSGTGKTATFTIGLLQAID------SKSKELQALVLSPTRELASQSESVISN 113
GKD+IAQA++GTGKT +F I L++ + KS+ + LVL+PTRELA+Q V +
Sbjct: 174 GKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLVLAPTRELANQ---VAKD 230
Query: 114 LGDYLNVTAHACT-GGKALQQDIKKVSKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLD 172
D + AC GG + Q I + ++ GTPGR+ D ++ L++ + +VLD
Sbjct: 231 FKDITRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLD 290
Query: 173 EADELLGETLGFKQQIYDIF-----TKLPPTIQVVVVSATMSKDILEITKKFMS---DPV 224
E D++L LGF +Q+ DI T Q ++ SAT + + ++ KK+M + V
Sbjct: 291 EVDQMLD--LGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQV 348
Query: 225 KILVKRDEISLDVIKQYYVDVEKEEWK--FDTLCDLYDSLTITQCVIFCNTRKKVDWLSR 282
++ K + + ++ + + + +Y + + +IFC T+K V ++
Sbjct: 349 DLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSG-SEGRAIIFCETKKNVTEMAM 407
Query: 283 KLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIP 342
+ +HGD+ Q +R+ + FR G +VL++T+V ARG+D+ ++ LVI P
Sbjct: 408 N-PHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPP 466
Query: 343 DNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIESHYRIKIK 388
++E+YIHR GR+GR GR G+ I F ER +L+ +E I K
Sbjct: 467 QDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFK 512
>YGL171w [A] KOG0344 ATP-dependent RNA helicase
Length = 564
Score = 170 bits (431), Expect = 3e-42
Identities = 113/358 (31%), Positives = 186/358 (51%), Gaps = 15/358 (4%)
Query: 34 LLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQAI--DSKSKE 91
LL + GF P +DV+A +G+GKT F I L+Q I D ++
Sbjct: 133 LLNNLIENGFTEPTPIQCECIPVALNNRDVLACGPTGSGKTLAFLIPLVQQIIDDKQTAG 192
Query: 92 LQALVLSPTRELASQ--------SESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQ 143
L+ L++SPT+ELA+Q S + L V + + G L+ + K
Sbjct: 193 LKGLIISPTKELANQIFIECFKLSYKIFLEKKRPLQVALLSKSLGAKLKNKVVS-DKKYD 251
Query: 144 VVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKL-PPTIQVV 202
++ TP R++D++K + L++ K L+ DEAD+L +T F +Q DI + P+++
Sbjct: 252 IIISTPLRLIDVVKNEALDLSKVKHLIFDEADKLFDKT--FVEQSDDILSACREPSLRKA 309
Query: 203 VVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSL 262
+ SAT+ ++ EI + M DPV++++ E + I+Q + EE K + L
Sbjct: 310 MFSATIPSNVEEIAQSIMMDPVRVIIGHKEAANTNIEQKLIFCGNEEGKLIAIRQLVQEG 369
Query: 263 TITQ-CVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLIST 321
+IF + + L +L +V +H + +RD+++ F++G+ LI T
Sbjct: 370 EFKPPIIIFLESITRAKALYHELMYDRINVDVIHAERTALQRDRIIERFKTGELWCLICT 429
Query: 322 DVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEI 379
DV ARGID + ++LVINYD+P + + Y+HRIGR+GR GR G AI F TK++ +K I
Sbjct: 430 DVLARGIDFKGVNLVINYDVPGSSQAYVHRIGRTGRGGRSGKAITFYTKQDSVAIKPI 487
>CE22474 [A] KOG0336 ATP-dependent RNA helicase
Length = 504
Score = 169 bits (429), Expect = 5e-42
Identities = 107/349 (30%), Positives = 180/349 (50%), Gaps = 21/349 (6%)
Query: 42 GFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQAIDSKSKELQ-------- 93
GFE P G+D I +Q+G+GKT F + L ID++ + +
Sbjct: 103 GFEKPSPIQSQMWPLLLSGQDCIGVSQTGSGKTLAFLLPALLHIDAQLAQYEKNDEEQKP 162
Query: 94 ---ALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQVVSGTPG 150
LVLSPTRELA Q E + Y + GG + + ++ ++V TPG
Sbjct: 163 SPFVLVLSPTRELAQQIEGEVKKYS-YNGYKSVCLYGGGSRPEQVEACRGGVEIVIATPG 221
Query: 151 RVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVVVVSATMSK 210
R+ D+ V+++ + +VLDEAD +L +GF+ I I ++ P V + SAT +
Sbjct: 222 RLTDLSNDGVISLASVTYVVLDEADRMLD--MGFEVAIRRILFEIRPDRLVALTSATWPE 279
Query: 211 DILEITKKFMSDPVKILV-KRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLTIT---- 265
+ ++T K+ + V + D S + Q++ V + +F +C++ + LT
Sbjct: 280 GVRKLTDKYTKEAVMAVNGSLDLTSCKSVTQFFEFVPHDS-RFLRVCEIVNFLTAAHGQN 338
Query: 266 -QCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVW 324
+ +IF ++ D LS + +HG Q +R+ +N RSG+ ++L++TD+
Sbjct: 339 YKMIIFVKSKVMADHLSSDFCMKGINSQGLHGGRSQSDREMSLNMLRSGEVQILVATDLA 398
Query: 325 ARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEER 373
+RGIDV I+ V+NYD P ++E Y+HR+GR+GR GRKG A++F+ +R
Sbjct: 399 SRGIDVPDITHVLNYDFPMDIEEYVHRVGRTGRAGRKGEAMSFLWWNDR 447
>CE28369 [A] KOG0335 ATP-dependent RNA helicase
Length = 644
Score = 169 bits (427), Expect = 9e-42
Identities = 110/369 (29%), Positives = 191/369 (50%), Gaps = 22/369 (5%)
Query: 25 FESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQA 84
F P ++ + G+ P +D+++ AQ+G+GKTA F + ++Q
Sbjct: 125 FNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSGKTAAFLLPIIQH 184
Query: 85 IDSKSKELQ---------------ALVLSPTRELASQSESVISNLGDYLNVTAHACTGGK 129
I + ++ ALVLSPTRELA Q + N+ GG+
Sbjct: 185 ILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKFSYKSNIQTAILYGGR 244
Query: 130 ALQQD-IKKVSKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQI 188
+D + ++ ++ TPGR++D+I++ + + C+ LVLDEAD +L +GF+ QI
Sbjct: 245 ENYRDQVNRLRAGTHILIATPGRLIDIIEQGFIGLAGCRYLVLDEADRMLD--MGFEPQI 302
Query: 189 YDIFTK-LPPTIQ--VVVVSATMSKDILEITKKFMSDP-VKILVKRDEISLDVIKQYYVD 244
I + +PP + SAT K+I + K F+ D + + V R + + I+Q +
Sbjct: 303 RKIVGQGMPPKTARTTAMFSATFPKEIQVLAKDFLKDNYIFLAVGRVGSTSENIEQRLLW 362
Query: 245 VEKEEWKFDTLCDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERD 304
V + E + + + L + + ++F T++ + L+ L + S+HGD+KQ ER+
Sbjct: 363 VNEMEKRSNLMEILMNEHSENLVLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERE 422
Query: 305 QVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVA 364
+ + FRSG+ +L++T V ARG+D+ + VINYD+P + + Y+HRIGR+GR G G+A
Sbjct: 423 RNLELFRSGQCPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRIGRTGRCGNLGIA 482
Query: 365 INFITKEER 373
+F + R
Sbjct: 483 TSFFNDKNR 491
>CE24451 [A] KOG0335 ATP-dependent RNA helicase
Length = 641
Score = 169 bits (427), Expect = 9e-42
Identities = 110/369 (29%), Positives = 191/369 (50%), Gaps = 22/369 (5%)
Query: 25 FESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQA 84
F P ++ + G+ P +D+++ AQ+G+GKTA F + ++Q
Sbjct: 122 FNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSGKTAAFLLPIIQH 181
Query: 85 IDSKSKELQ---------------ALVLSPTRELASQSESVISNLGDYLNVTAHACTGGK 129
I + ++ ALVLSPTRELA Q + N+ GG+
Sbjct: 182 ILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKFSYKSNIQTAILYGGR 241
Query: 130 ALQQD-IKKVSKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQI 188
+D + ++ ++ TPGR++D+I++ + + C+ LVLDEAD +L +GF+ QI
Sbjct: 242 ENYRDQVNRLRAGTHILIATPGRLIDIIEQGFIGLAGCRYLVLDEADRMLD--MGFEPQI 299
Query: 189 YDIFTK-LPPTIQ--VVVVSATMSKDILEITKKFMSDP-VKILVKRDEISLDVIKQYYVD 244
I + +PP + SAT K+I + K F+ D + + V R + + I+Q +
Sbjct: 300 RKIVGQGMPPKTARTTAMFSATFPKEIQVLAKDFLKDNYIFLAVGRVGSTSENIEQRLLW 359
Query: 245 VEKEEWKFDTLCDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERD 304
V + E + + + L + + ++F T++ + L+ L + S+HGD+KQ ER+
Sbjct: 360 VNEMEKRSNLMEILMNEHSENLVLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERE 419
Query: 305 QVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVA 364
+ + FRSG+ +L++T V ARG+D+ + VINYD+P + + Y+HRIGR+GR G G+A
Sbjct: 420 RNLELFRSGQCPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRIGRTGRCGNLGIA 479
Query: 365 INFITKEER 373
+F + R
Sbjct: 480 TSFFNDKNR 488
>At5g05450 [A] KOG0345 ATP-dependent RNA helicase
Length = 593
Score = 168 bits (425), Expect = 1e-41
Identities = 114/367 (31%), Positives = 194/367 (52%), Gaps = 27/367 (7%)
Query: 30 LKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQAI---- 85
L D++ + FE+ KDV A +G+GKT F + L++ +
Sbjct: 23 LSGDIIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRST 82
Query: 86 --DSKSKELQALVLSPTRELASQSESVISNLGDYL-NVTAHACTGGKALQQDIKKVSKN- 141
K ++ +++SPTREL++Q +V L NV + GG+ ++ D+K + +
Sbjct: 83 SFPPKPHQVMGVIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIEEEG 142
Query: 142 CQVVSGTPGRVLDMIKR-QVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQ 200
C V+ GTPGR+ D+++R ++L+ RN +IL+LDEAD LL +GF++Q+ I ++LP +
Sbjct: 143 CNVLIGTPGRLSDIMERMEILDFRNLEILILDEADRLL--EMGFQRQVNYIISRLPKQRR 200
Query: 201 VVVVSATMSKDILEITKKFMSDPVKILVK---RDEISLDVIKQY--------YVDVEKEE 249
+ SAT ++ + E+ K + +PV++ V+ + E S + Y++ E ++
Sbjct: 201 TGLFSATQTEGVEELAKAGLRNPVRVEVRAKSKSESSQQLTNSKTPSGLHLEYMECEADK 260
Query: 250 WKFDTLCDLYDSLTITQCVIFCNTRKKVDW----LSRKLTQTNFSVSSMHGDMKQEERDQ 305
K L DL + + ++F T VD+ LS+ + S+ +HGDMKQ RD+
Sbjct: 261 -KSSQLVDLLIKNSDKKLIVFFMTCASVDYWGLVLSKIPALKSISLIPIHGDMKQNARDK 319
Query: 306 VMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAI 365
+ F + L+ TDV ARG+D+ I V+ YD P + + HR GR+ R GR+G AI
Sbjct: 320 ALASFTKASSGALLCTDVAARGLDIPGIDYVVQYDPPQDPNMFNHRAGRTARLGRQGRAI 379
Query: 366 NFITKEE 372
F+ +E
Sbjct: 380 VFLLPKE 386
>Hs13787209 [A] KOG0331 ATP-dependent RNA helicase
Length = 715
Score = 166 bits (421), Expect = 4e-41
Identities = 113/349 (32%), Positives = 189/349 (53%), Gaps = 30/349 (8%)
Query: 60 GKDVIAQAQSGTGKTATFTIGLLQAIDSKSKEL------QALVLSPTRELASQSESVISN 113
GKD+IAQA++GTGKT +F I L++ + + ++ Q LVL+PTRELA+Q S+
Sbjct: 155 GKDLIAQARTGTGKTFSFAIPLIEKLHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSD 214
Query: 114 LGDYLNVTAHACT-GGKALQQDIKKVSKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLD 172
+ L+V AC GG +++ ++ GTPGR+ D I+ L++ K +VLD
Sbjct: 215 ITKKLSV---ACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLD 271
Query: 173 EADELLGETLGFKQQIYDIFTKL-----PPTIQVVVVSATMSKDILEITKKFMS---DPV 224
E D++L +GF Q+ +I + Q ++ SAT + + KK+M + V
Sbjct: 272 EVDQMLD--MGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQV 329
Query: 225 KILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLTIT-----QCVIFCNTRKKVDW 279
++ K+ + + ++ + K W + D + + + +IFC T+K+
Sbjct: 330 DLIGKKTQKTAITVEHLAI---KCHWT-QRAAVIGDVIRVYSGHQGRTIIFCETKKEAQE 385
Query: 280 LSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINY 339
LS+ + S+HGD+ Q++R+ + FR+G VL++T+V ARG+D+ ++ LVI
Sbjct: 386 LSQN-SAIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQS 444
Query: 340 DIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIESHYRIKIK 388
P ++E+YIHR GR+GR GR GV I F +E +L ++E IK K
Sbjct: 445 SPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFK 493
>Hs15316941 [A] KOG0344 ATP-dependent RNA helicase
Length = 491
Score = 166 bits (420), Expect = 6e-41
Identities = 109/368 (29%), Positives = 196/368 (52%), Gaps = 12/368 (3%)
Query: 23 ATFESMN----LKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFT 78
ATF+ ++ + LL+ I GF+ P G++++A A +G+GKT F+
Sbjct: 53 ATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFS 112
Query: 79 IGLLQAIDSKS-KELQALVLSPTRELASQSESVISNLGDYLNVTAHAC-TGGKALQQDIK 136
I +L + + K +AL++SPTRELASQ + + + H A ++
Sbjct: 113 IPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGP 172
Query: 137 KVSKNCQVVSGTPGRVLDMIKRQV--LNVRNCKILVLDEADELL--GETLGFKQQIYDIF 192
K SK ++ TP R++ ++K+ +++ + + LV+DE+D+L G+T GF+ Q+ IF
Sbjct: 173 KSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKT-GFRDQLASIF 231
Query: 193 TKLPP-TIQVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWK 251
++ + SAT + D+ + K + + + + + +++ ++Q + V E K
Sbjct: 232 LACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGARNSAVETVEQELLFVGSETGK 291
Query: 252 FDTLCDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFR 311
+ +L ++F + ++ L +L +V +H + Q++RD ++ FR
Sbjct: 292 LLAMRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFR 351
Query: 312 SGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKE 371
+GK VLI T + ARGID + ++LVINYD P + YIHRIGR+GR G KG AI F T++
Sbjct: 352 AGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFFTED 411
Query: 372 ERPKLKEI 379
++P L+ +
Sbjct: 412 DKPLLRSV 419
>CE27553 [A] KOG0337 ATP-dependent RNA helicase
Length = 853
Score = 166 bits (420), Expect = 6e-41
Identities = 106/385 (27%), Positives = 184/385 (47%), Gaps = 32/385 (8%)
Query: 25 FESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQA 84
++ + L + + I GF P GKDV+A +++G+GKTA F I +LQ
Sbjct: 26 WQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFVIPMLQK 85
Query: 85 IDSKSKE-LQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQ 143
+ + ++AL++SPTRELA Q+ V+ LG + + GG +++ + +N
Sbjct: 86 LKRRDTTGIRALMVSPTRELALQTFKVVKELGRFTGLRCACLVGGDQIEEQFSTIHENPD 145
Query: 144 VVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVVV 203
++ TPGR+L +I L + + +V DEAD L +GF+ Q+ + ++P + Q ++
Sbjct: 146 ILLATPGRLLHVIVEMDLRLSYVQYVVFDEADRLF--EMGFQDQLTETLKRIPESRQTLL 203
Query: 204 VSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDT--LCD--LY 259
SAT+ K +++ K ++DP+ + + DE D + + +E F LC +
Sbjct: 204 FSATLPKMLVDFAKAGLTDPMLVRLDVDEKVSDKLSMVFCMCRPDEKLFALLHLCRNFCF 263
Query: 260 DSLTIT-------------------------QCVIFCNTRKKVDWLSRKLTQTNFSVSSM 294
L T Q V+FC T K V+++ L + S +
Sbjct: 264 KKLLETSLKKCKISKKKVPLLKKVRMDRENKQTVVFCATMKHVEYVVGILHRAGIDCSFV 323
Query: 295 HGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGR 354
+ + R + F + +L+ TDV ARG+D+ + VIN P + ++HR+GR
Sbjct: 324 YSQLDATARKMNIQKFHEKQNNILVVTDVAARGVDIPLLDTVINLHFPPKAKLFVHRVGR 383
Query: 355 SGRFGRKGVAINFITKEERPKLKEI 379
R GR G AI+ I +E P L ++
Sbjct: 384 VARAGRSGTAISLIANDELPYLTDL 408
>At3g09720 [A] KOG0344 ATP-dependent RNA helicase
Length = 545
Score = 165 bits (418), Expect = 1e-40
Identities = 112/351 (31%), Positives = 177/351 (49%), Gaps = 8/351 (2%)
Query: 34 LLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQAID-----SK 88
+LR + GF+ P G++ A A +G+GKT F +L +
Sbjct: 152 ILRNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFICPMLIKLKVLNCRPS 211
Query: 89 SKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQVVSGT 148
+ ++A++LSP RELA+Q+ L N T D K+ C V+ T
Sbjct: 212 TDGIRAVILSPARELAAQTAREGKKLIKGSNFHIRLMTKPLVKTADFSKLW--CDVLIST 269
Query: 149 PGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVVVVSATM 208
P R+ IK + +++ + LVLDE+D+L ++L KQ + P+I + SAT+
Sbjct: 270 PMRLKRAIKAKKIDLSKVEYLVLDESDKLFEQSL-LKQIDCVVKACSNPSIIRSLFSATL 328
Query: 209 SKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLTITQCV 268
+ E+ + M D V++++ R + + +KQ V EE K L + +
Sbjct: 329 PDSVEELARSIMHDAVRVIIGRKNTASETVKQKLVFAGSEEGKLLALRQSFAESLNPPVL 388
Query: 269 IFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGI 328
IF ++++ L +L N +H D+ ER+ ++ FR+G+ VLI+TDV ARG+
Sbjct: 389 IFVQSKERAKELYDELKCENIRAGVIHSDLPPGERENAVDQFRAGEKWVLIATDVIARGM 448
Query: 329 DVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEI 379
D + I+ VINYD PD+ YIHRIGRSGR GR G AI F T+++ P L+ I
Sbjct: 449 DFKGINCVINYDFPDSASAYIHRIGRSGRAGRSGEAITFYTEQDVPFLRNI 499
>SPBC543.06c [A] KOG0340 ATP-dependent RNA helicase
Length = 453
Score = 164 bits (416), Expect = 2e-40
Identities = 113/380 (29%), Positives = 194/380 (50%), Gaps = 22/380 (5%)
Query: 24 TFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQ 83
+F + + P L+ + P G++ I A++G+GKTA F + +++
Sbjct: 8 SFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIE 67
Query: 84 AIDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQ 143
+ AL+L+PTRELA Q + + LG LN+ GG + + +SK
Sbjct: 68 KWSKDPSGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSKRPH 127
Query: 144 VVSGTPGRVLDMIKRQ----VLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTI 199
VV TPGR+ D+I+ + +R K LV+DEAD LL T F + D F+ LP +
Sbjct: 128 VVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPT--FADDLDDCFSVLPASE 185
Query: 200 --QVVVVSATMSKDILEIT---KKFMSDPVKIL-VKRDEISL-DVIKQYYVDVEKEEWKF 252
Q ++ +AT++ I ++ +K P+ + V+ D IS+ ++Q Y+ V + +
Sbjct: 186 DRQTLLFTATVTDAIRQLKYQPQKNNKPPLWLYEVETDNISVPSTLQQSYIFVSSQVRE- 244
Query: 253 DTLCDLYDSLTITQ-----CVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVM 307
L LTI + +IF N + + + L V+ +H +M Q ER +
Sbjct: 245 ---AYLVHLLTIPENAKKSAIIFVNRTRTAELIYSILRLLELRVTELHSEMVQRERINSL 301
Query: 308 NDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINF 367
FR+ A++L++TDV +RG+D+ + LVIN+D+P + ++YIHR+GR+ R GR G +I+
Sbjct: 302 GRFRAEAAKILVATDVASRGLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESISI 361
Query: 368 ITKEERPKLKEIESHYRIKI 387
+T+ + + IE K+
Sbjct: 362 VTERDVDLVHAIEDRVGTKL 381
>At1g16280 [A] KOG0340 ATP-dependent RNA helicase
Length = 491
Score = 164 bits (414), Expect = 3e-40
Identities = 110/373 (29%), Positives = 183/373 (48%), Gaps = 7/373 (1%)
Query: 22 SATFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGL 81
+ FE + L + G P G+DV+ AQ+G+GKTA F + +
Sbjct: 57 ATNFEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPI 116
Query: 82 LQAIDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKN 141
L + + ALV++PTRELA Q LG LN+ GG + +
Sbjct: 117 LHRLAEDPYGVFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSLVSR 176
Query: 142 CQVVSGTPGRVLDMIKRQ--VLNV-RNCKILVLDEADELLGETLGFKQQIYDIFTKLPPT 198
+V TPGR+ +++ V V K LVLDEAD +L +GF+ ++ IF LP +
Sbjct: 177 PHIVITTPGRIKVLLENNPDVPPVFSRTKFLVLDEADRVLD--VGFQDELRTIFQCLPKS 234
Query: 199 IQVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYV--DVEKEEWKFDTLC 256
Q ++ SATM+ ++ + + + ++D + Q ++ D + +E +
Sbjct: 235 RQTLLFSATMTSNLQALLEHSSNKAYFYEAYEGLKTVDTLTQQFIFEDKDAKELYLVHIL 294
Query: 257 DLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKAR 316
+ I +IF +T + LS L + +MH Q R ++ F+SGK
Sbjct: 295 SQMEDKGIRSAMIFVSTCRTCQRLSLMLDELEVENIAMHSLNSQSMRLSALSKFKSGKVP 354
Query: 317 VLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKL 376
+L++TDV +RG+D+ + LVINYDIP + +Y+HR+GR+ R GR G+A++ IT+ + +
Sbjct: 355 ILLATDVASRGLDIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVSIITETDVKLI 414
Query: 377 KEIESHYRIKIKP 389
+IE K++P
Sbjct: 415 HKIEEEVGKKMEP 427
>YHR169w [A] KOG0340 ATP-dependent RNA helicase
Length = 431
Score = 163 bits (413), Expect = 4e-40
Identities = 120/387 (31%), Positives = 186/387 (48%), Gaps = 23/387 (5%)
Query: 23 ATFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLL 82
A F+S+ L L + P G+D I A++G+GKT F +L
Sbjct: 2 ADFKSLGLSKWLTESLRAMKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPML 61
Query: 83 QAIDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNC 142
+ +VL+PTRELA Q + LG +N+ GG+++ Q + +
Sbjct: 62 TKWSEDPSGMFGVVLTPTRELAMQIAEQFTALGSSMNIRVSVIVGGESIVQQALDLQRKP 121
Query: 143 QVVSGTPGRVLDMIKRQ----VLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPT 198
+ TPGR+ I V + K LVLDEAD LL T F + + LPP
Sbjct: 122 HFIIATPGRLAHHIMSSGDDTVGGLMRAKYLVLDEADILLTST--FADHLATCISALPPK 179
Query: 199 I--QVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLD------VIKQYYVDVE---K 247
Q ++ +AT++ + + + L S+D +K Y+ V K
Sbjct: 180 DKRQTLLFTATITDQVKSLQNAPVQKGKPPLFAYQVESVDNVAIPSTLKIEYILVPEHVK 239
Query: 248 EEWKFDTL-CDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQV 306
E + + L C+ Y++ T +IF N + L R L Q V+S+H M Q+ER
Sbjct: 240 EAYLYQLLTCEEYENKT---AIIFVNRTMTAEILRRTLKQLEVRVASLHSQMPQQERTNS 296
Query: 307 MNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAIN 366
++ FR+ AR+LI+TDV +RG+D+ + LV+NYDIP + + +IHR GR+ R GR G AI+
Sbjct: 297 LHRFRANAARILIATDVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRIGDAIS 356
Query: 367 FITKEERPKLKEIESHYRIKIKPTPAN 393
F+T+ + +++ IE RI K T N
Sbjct: 357 FVTQRDVSRIQAIED--RINKKMTETN 381
>CE25231 [A] KOG0343 RNA Helicase
Length = 732
Score = 163 bits (413), Expect = 4e-40
Identities = 112/368 (30%), Positives = 191/368 (51%), Gaps = 14/368 (3%)
Query: 25 FESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQA 84
FE L L G+ + P G DV+ A++G+GKT I +L+A
Sbjct: 78 FEDFPLSWRTLEGLKDNDYTKPTEIQRDTIAYSLTGSDVVGAAKTGSGKTLALVIPVLEA 137
Query: 85 ID----SKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSK 140
+ S L AL++SPTRELA Q+ S I+ +G + + GG + + ++S
Sbjct: 138 LWRAKWSPDYGLGALIISPTRELALQTFSTINAVGAHHGFSCGLVIGGSDVAFERNRIS- 196
Query: 141 NCQVVSGTPGRVLD-MIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTI 199
++ TPGR+L M + ++ + ++LVLDEAD +L +GF +Q+ I LP
Sbjct: 197 GINIIVCTPGRLLQHMDENAQMSCDSLQVLVLDEADRMLD--MGFSKQLNSIINNLPAER 254
Query: 200 QVVVVSATMSKDILEITKKFMSDPVKILVKRDEISL--DVIKQYYVDVEKEEWKFDTLCD 257
Q ++ SAT ++++ ++ + +DPV + V + + D +KQ YV VE EE K + L
Sbjct: 255 QTLLFSATQTRNVKDLCRVCTNDPVFVSVHENASAATPDNLKQSYVIVE-EEHKINALWS 313
Query: 258 LYDSLTITQCVIFCNTRKKVDWLSRKLTQTN--FSVSSMHGDMKQEERDQVMNDFRSGKA 315
++ + ++F ++ K+ +L+ +Q V + G M Q++R + F KA
Sbjct: 314 FIEAHRKKKSLVFVSSCKQARFLTEAFSQLRPGLPVMGLWGTMNQKKRIETFTKFDESKA 373
Query: 316 RVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFIT-KEERP 374
VLI+TDV +RG+D + I VI D P +++YIHR+GRS R G ++ ++ +E
Sbjct: 374 AVLIATDVASRGLDFEHIDWVIQVDCPAQIDDYIHRVGRSARMDDSGNSLLMVSPSQEEA 433
Query: 375 KLKEIESH 382
+ ++E H
Sbjct: 434 MIGKLEKH 441
>At3g18600 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 568
Score = 163 bits (413), Expect = 4e-40
Identities = 111/385 (28%), Positives = 197/385 (50%), Gaps = 12/385 (3%)
Query: 22 SATFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGL 81
+ TF+S++L I GF+Y GKDV+ A++G+GKT F I
Sbjct: 88 NVTFDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPA 147
Query: 82 LQAID----SKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKK 137
++ + S +V+ PTRELA Q+++V L + + T GG + + ++
Sbjct: 148 VELLFKERFSPRNGTGVIVICPTRELAIQTKNVAEELLKHHSQTVSMVIGGNNRRSEAQR 207
Query: 138 VSKNCQVVSGTPGRVLDMIKR-QVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLP 196
++ +V TPGR+LD ++ + ++ K LV+DEAD +L E F++ + I LP
Sbjct: 208 IASGSNLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILEEN--FEEDMNKILKILP 265
Query: 197 PTIQVVVVSATMSKDILEITKKFMSDPVKILVK--RDEISLDVIKQYYVDVEKEEWKFDT 254
T Q + SAT + + ++ + ++ PV + V R +++ + ++Q Y V ++
Sbjct: 266 KTRQTALFSATQTSKVKDLARVSLTSPVHVDVDDGRRKVTNEGLEQGYCVVPSKQRLILL 325
Query: 255 LCDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGK 314
+ L +L + ++F +T K V + + + ++ VS +HG M Q R + DF K
Sbjct: 326 ISFLKKNLN-KKIMVFFSTCKSVQFHTEIMKISDVDVSDIHGGMDQNRRTKTFFDFMKAK 384
Query: 315 ARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGR-FGRKGVAINFITKEER 373
+L+ TDV ARG+D+ + +I YD PD YIHR+GR+ R G KG A+ + EE
Sbjct: 385 KGILLCTDVAARGLDIPSVDWIIQYDPPDKPTEYIHRVGRTARGEGAKGKALLVLIPEEL 444
Query: 374 PKLKEIESHYRIKIKPTPANLEELS 398
++ +++ ++ +K N + LS
Sbjct: 445 QFIRYLKA-AKVPVKELEFNEKRLS 468
>7298459 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 802
Score = 162 bits (411), Expect = 6e-40
Identities = 103/359 (28%), Positives = 178/359 (48%), Gaps = 37/359 (10%)
Query: 42 GFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQAIDS--KSKELQ------ 93
G++ P +D+I A++G+GKT F I LL I S K + L+
Sbjct: 413 GYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQSLPKIERLEDVDQGP 472
Query: 94 -ALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQVVSGTPGRV 152
A++++PTRELA Q E + G L + GG + ++ ++ C++V TPGR+
Sbjct: 473 YAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQGFRLRLGCEIVIATPGRL 532
Query: 153 LDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTI------------- 199
+D+++ + L + C +VLDEAD ++ +GF+ + I +P T
Sbjct: 533 IDVLENRYLVLNQCTYIVLDEADRMID--MGFEPDVQKILEYMPVTNLKPDTEEAEDETK 590
Query: 200 ------------QVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEK 247
Q V+ +ATM + + + ++ P + + + +Q V +
Sbjct: 591 LMENFYTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSVGKPTERTEQI-VYMMG 649
Query: 248 EEWKFDTLCDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVM 307
E K L ++ +IF N +K D L++ L + ++ ++HG QE+R+ +
Sbjct: 650 ENDKRKKLMEILSRKIDPPVIIFVNQKKGADVLAKGLEKLGYNSCTLHGGKGQEQREYAL 709
Query: 308 NDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAIN 366
+SG +L++TDV RGID++ +SLVINYD+ +E+Y HRIGR+GR G+ G AI+
Sbjct: 710 AALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTGRAGKTGCAIS 768
>Hs13775232 [A] KOG0331 ATP-dependent RNA helicase
Length = 580
Score = 162 bits (410), Expect = 8e-40
Identities = 101/332 (30%), Positives = 175/332 (52%), Gaps = 9/332 (2%)
Query: 25 FESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQA 84
FE +L L + G+E P G+D++A A +G+GKTA F + ++
Sbjct: 205 FEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIMR 264
Query: 85 IDSKSKELQALVLSPTRELASQSESVISNLGDYL-NVTAHACTGGKALQQDIKKVSKNCQ 143
+SK AL+L+PTRELA Q E L L + GG L + ++ ++ +
Sbjct: 265 ALFESKTPSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRLQQHVK 324
Query: 144 VVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVVV 203
V+ TPGR+LD+IK+ + + KI+V+DEAD +L +GF+QQ+ DI +P Q ++
Sbjct: 325 VIIATPGRLLDIIKQSSVELCGVKIVVVDEADTML--KMGFQQQVLDILENIPNDCQTIL 382
Query: 204 VSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVE---KEEWKFDTLCDLYD 260
VSAT+ I ++ + + +PV+I+ + ++Q + VE K++ F+ L D
Sbjct: 383 VSATIPTSIEQLASQLLHNPVRIITGEKNLPCANVRQIILWVEDPAKKKKLFEILND--K 440
Query: 261 SLTITQCVIFCNTRKKVDWLSRKLTQ-TNFSVSSMHGDMKQEERDQVMNDFRSGKARVLI 319
L ++F + + D LS + + T S+H + Q ER ++ G V++
Sbjct: 441 KLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEVVV 500
Query: 320 STDVWARGIDVQQISLVINYDIPDNLENYIHR 351
ST V RG+D+ + LV+N+D+P +++ Y+H+
Sbjct: 501 STGVLGRGLDLISVRLVVNFDMPSSMDEYVHQ 532
>At5g08610 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 827
Score = 162 bits (409), Expect = 1e-39
Identities = 108/368 (29%), Positives = 185/368 (49%), Gaps = 37/368 (10%)
Query: 25 FESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQA 84
F+ L P L+ I GFE GKDV+A+A++GTGKT F + ++A
Sbjct: 361 FDQFPLSPLSLKAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEA 420
Query: 85 I--------DSKSKELQALVLSPTRELASQSESVISNLGDYL-NVTAHACTGGKALQQDI 135
+ DS+ + LV+ PTRELASQ+ + + L Y ++ GG L +
Sbjct: 421 VIKSPPASRDSRQPPIIVLVVCPTRELASQAAAEANTLLKYHPSIGVQVVIGGTKLPTEQ 480
Query: 136 KKVSKN-CQVVSGTPGRVLDMIKRQ---VLNVRNCKILVLDEADELLGETLGFKQQIYDI 191
+++ N CQ++ TPGR+ D I+ + K+LVLDEAD LL +GF++ I I
Sbjct: 481 RRMQTNPCQILVATPGRLKDHIENTSGFATRLMGVKVLVLDEADHLLD--MGFRRDIERI 538
Query: 192 FTKLPPTIQVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWK 251
+P Q + SAT+ +++ +I + +KRD ++ +++ + ++ +
Sbjct: 539 IAAVPKQRQTFLFSATVPEEVRQICH--------VALKRDHEFINCVQEGSGETHQKVTQ 590
Query: 252 FDTLCDLYDSLTIT--------------QCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGD 297
+ L ++ + +IFC T ++ L+Q + +V +H
Sbjct: 591 MYMIASLDRHFSLLHVLLKEHIADNVDYKVIIFCTTAMVTRLVADLLSQLSLNVREIHSR 650
Query: 298 MKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGR 357
Q R +V ++FR KA +L+++DV ARG+D +SLV+ +P + E YIHR+GR+GR
Sbjct: 651 KPQSYRTRVSDEFRKSKAIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGR 710
Query: 358 FGRKGVAI 365
G++G +
Sbjct: 711 KGKEGEGV 718
>At5g63630 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 522
Score = 161 bits (408), Expect = 1e-39
Identities = 110/383 (28%), Positives = 192/383 (49%), Gaps = 37/383 (9%)
Query: 25 FESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQA 84
F+ L P L+ I G+E GKDV+A+A++GTGKT F + ++
Sbjct: 56 FDHYPLSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEV 115
Query: 85 I--------DSKSKELQALVLSPTRELASQSESVISNLGDYL-NVTAHACTGGKALQQDI 135
+ D+K + ALV+ PTRELA+Q+ + + L Y ++ GG L +
Sbjct: 116 VVKSPPTSPDNKRPPILALVICPTRELANQAATEANTLLKYHPSIGVQVVIGGTRLGLEQ 175
Query: 136 KKVSKN-CQVVSGTPGRVLDMIKRQ---VLNVRNCKILVLDEADELLGETLGFKQQIYDI 191
K++ N CQ++ TPGR+ D I+ ++ K+LVLDEAD LL +GF++ I I
Sbjct: 176 KRMQTNPCQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLD--MGFRKDIERI 233
Query: 192 FTKLPPTIQVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWK 251
+ +P Q + SAT+ +++ +I + ++RD ++ + + ++ ++ +
Sbjct: 234 ISAVPKERQTFLFSATVPEEVRQICL--------VALRRDHEFVNCVHEGTIETHQQVRQ 285
Query: 252 FDTLCDL--YDSLTIT------------QCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGD 297
+ L + SL T + ++FC T ++ L + N +V +H
Sbjct: 286 MHMIASLDRHFSLLYTLLREHIMGNVDYKVIVFCTTAMVTKLVADLLGELNLNVREIHSR 345
Query: 298 MKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGR 357
Q R +V N+FR K +L+++DV ARG+D ++LV+ +P + E YIHR+GR+GR
Sbjct: 346 KPQSYRTRVSNEFRKSKGLILVTSDVSARGVDYPDVTLVLQVGLPKDREQYIHRLGRTGR 405
Query: 358 FGRKGVAINFITKEERPKLKEIE 380
G++G I + E L ++
Sbjct: 406 KGKEGEGILLLAPWEEYFLSSLK 428
>ECU02g0670 [A] KOG0335 ATP-dependent RNA helicase
Length = 503
Score = 160 bits (405), Expect = 3e-39
Identities = 102/325 (31%), Positives = 175/325 (53%), Gaps = 33/325 (10%)
Query: 60 GKDVIAQAQSGTGKTATFTIGLLQAIDSKSKELQALVLSPTRELASQSESVISNLGDYLN 119
G+++I +A +G GKT F I +++ + K+ QA ++SPTREL Q S L
Sbjct: 134 GRNLICRAPTGMGKTMCFLIPIIER-HRQMKKPQACIISPTRELCEQIRVEASKLVAGSR 192
Query: 120 VTAHACTGGKALQQDIKKVSKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLG 179
+ + G K QD+ S +V TPGR++D++ R+ +++ ++ VLDEAD+LL
Sbjct: 193 IRVVSIYGKK---QDLPSYS-GVDIVVATPGRLIDLLHRKKVDLSEIRMFVLDEADKLLD 248
Query: 180 ETLGFKQQIYDIFTKLPPTIQVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIK 239
+GF+ I +I +P Q + SAT S + + F+ + K+ ++ +L I+
Sbjct: 249 --MGFEIPIREIHGFVPKNTQTCLFSATYSPKLTRMINYFLPED-KVSIEISSETLKNIR 305
Query: 240 QYYVDVE-----------------KEEWKFDTLCDLYDSLTITQCVIFCNTRKKVDWLSR 282
Q V+V K W+ + D + ++F + + + +
Sbjct: 306 QEIVEVRNKKKMLLNILKGPDINLKGSWRMEVQPD--------KVLVFVERKSECGEVEK 357
Query: 283 KLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIP 342
L ++ S+HGD +Q +RD+ + FR+G+ V+++T V ARGID++ + LVINYDIP
Sbjct: 358 VLKKSGILCVSLHGDKEQADRDEALKGFRNGRFPVMVATSVAARGIDIKDVKLVINYDIP 417
Query: 343 DNLENYIHRIGRSGRFGRKGVAINF 367
+++ YIHRIGR+GR G+ G +I+F
Sbjct: 418 KDIKEYIHRIGRTGREGKSGKSISF 442
>CE17559 [A] KOG0339 ATP-dependent RNA helicase
Length = 811
Score = 160 bits (405), Expect = 3e-39
Identities = 105/373 (28%), Positives = 197/373 (52%), Gaps = 12/373 (3%)
Query: 34 LLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFT----IGLLQAIDSKS 89
L+ I +E P G+DV+ A++G+GKTA + + ++ D K+
Sbjct: 276 LMEAIRKSEYEQPTPIQAMAIPSALSGRDVLGIAKTGSGKTAAYLWPAIVHIMDQPDLKA 335
Query: 90 KELQ-ALVLSPTRELASQSESVISNLGDYLNVTAH-ACTGGKALQQDIKKVSKNCQVVSG 147
E A+++ PTRELA Q N+ A GG +Q + ++ ++V
Sbjct: 336 GEGPVAVIVVPTRELAIQVFQEAKKFCKVYNINPICAYGGGSKWEQSNELQNEGAEMVVC 395
Query: 148 TPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVVVVSAT 207
TPGR++D++K N LV DEAD + +GF+ Q+ I + P Q ++ SAT
Sbjct: 396 TPGRIIDLVKMGATNFLRTTFLVFDEADRMFD--MGFEAQVKSISDHVRPDRQCLMFSAT 453
Query: 208 MSKDILEITKKFMSDPVKILVKR-DEISLDVIKQYYVDVEKEEWKFDTLC-DLYDSLTIT 265
+ + + + + DPV+I+ E + D+ ++ +V ++ ++ K L +L + ++
Sbjct: 454 FKQKVERLARDALVDPVRIVQGEVGEANADIEQKVFV-MQNQDVKLHWLIRNLVEFASLG 512
Query: 266 QCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWA 325
+ +IF + + +++KL +F + +HGDM Q ER++ + FR K+++L++TDV A
Sbjct: 513 KVLIFVTKKLDSEDVAKKLKMKDFDIVLLHGDMLQAERNENLLKFRK-KSQILVATDVAA 571
Query: 326 RGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIESHYRI 385
RG+D+ +I VIN+D+ +++ ++HRIGR+GR G KG A +T+++ + + +
Sbjct: 572 RGLDISEIRTVINFDMARDIDTHVHRIGRTGRAGHKGTAYTLVTEKDIEMVGHLVKNLES 631
Query: 386 KIKPTPANLEELS 398
+ P L +L+
Sbjct: 632 VSQEVPKPLMDLA 644
>At1g71370 [A] KOG0345 ATP-dependent RNA helicase
Length = 558
Score = 157 bits (398), Expect = 2e-38
Identities = 111/358 (31%), Positives = 185/358 (51%), Gaps = 18/358 (5%)
Query: 30 LKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQAI---- 85
L D++ + GFE KDV+ A +G+GKT F + ++ I
Sbjct: 23 LSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSN 82
Query: 86 --DSKSKELQALVLSPTRELASQSESVISNLGDYL-NVTAHACTGGKALQQDIKKVSKN- 141
K ++ +++SPTREL++Q V L NV + GG+ ++ D+ + +
Sbjct: 83 SYPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEEG 142
Query: 142 CQVVSGTPGRVLDMIKR-QVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQ 200
++ GTPGR+ DM+KR + L+ RN +IL+LDEAD LL +GF++Q+ I ++LP +
Sbjct: 143 ANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLD--MGFQKQVNYIISRLPKQRR 200
Query: 201 VVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQY--YVDVEKEEWKFDTLCDL 258
+ SAT ++ + ++ K + + ++++ + S Y Y+ E ++ K L L
Sbjct: 201 TGLFSATQTQAVADLAKAGLRNAMEVISGAESKSKTSSGLYCEYLKCEADQ-KSSQLVHL 259
Query: 259 YDSLTITQCVIFCNTRKKVDW----LSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGK 314
+ V+F T VD+ LS+ T + S S HG M Q+ RD + F
Sbjct: 260 LIENKNKKLVVFFMTCACVDYWGLVLSKIPTLKSISFFSTHGKMDQKGRDTALASFTEAS 319
Query: 315 ARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEE 372
+ VL+ TDV ARG+D+ I V+ YD P + + +IHR+GR+ R R+G AI F+ +E
Sbjct: 320 SGVLLCTDVAARGLDIPGIDYVVQYDPPQDPDVFIHRVGRTARMERQGRAIVFLMPKE 377
>Hs13514831 [A] KOG0343 RNA Helicase
Length = 875
Score = 156 bits (395), Expect = 4e-38
Identities = 106/382 (27%), Positives = 196/382 (50%), Gaps = 14/382 (3%)
Query: 25 FESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQA 84
F L L+G+ + GKDV+ A++G+GKT F + +L+A
Sbjct: 71 FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEA 130
Query: 85 ID----SKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSK 140
+ + + L L++SPTRELA Q+ V+ +G + +A GGK L+ + ++++
Sbjct: 131 LYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERIN- 189
Query: 141 NCQVVSGTPGRVLDMIKRQV-LNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTI 199
N ++ TPGR+L + V + + ++LVLDEAD +L +GF + + LP
Sbjct: 190 NINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILD--MGFADTMNAVIENLPKKR 247
Query: 200 QVVVVSATMSKDILEITKKFMSDPVKILV--KRDEISLDVIKQYYVDVEKEEWKFDTLCD 257
Q ++ SAT +K + ++ + + +P + V K + ++Q Y+ E ++ K L
Sbjct: 248 QTLLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQQ-KISVLYS 306
Query: 258 LYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVS--SMHGDMKQEERDQVMNDFRSGKA 315
S + ++F ++ K+V +L R + VS ++HG +Q R +V N+F +A
Sbjct: 307 FLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGVSILALHGRQQQMRRMEVYNEFVRKRA 366
Query: 316 RVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPK 375
VL +TD+ ARG+D ++ V+ +D P++ YIHR GR+ R+ G A+ + E+
Sbjct: 367 AVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEKAM 426
Query: 376 LKEIESHYRIKIKPTPANLEEL 397
++++ ++ +K N E+L
Sbjct: 427 VQQL-LQKKVPVKEIKINPEKL 447
>At3g09620 [A] KOG0334 RNA helicase
Length = 989
Score = 156 bits (395), Expect = 4e-38
Identities = 103/365 (28%), Positives = 186/365 (50%), Gaps = 41/365 (11%)
Query: 43 FEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQAI-DSKSKELQ----ALVL 97
+E P G+D I A++G+GKT F + +L+ I D E LV+
Sbjct: 416 YEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVM 475
Query: 98 SPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQVVSGTPGRVLDMI- 156
+PTREL Q S I L + GG + Q I ++ + ++V TPGR++D++
Sbjct: 476 APTRELVQQIYSDIRKFSKALGIICVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILC 535
Query: 157 --KRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVVVVSATMSKDILE 214
++ N+R LV+DEAD + +GF+ QI I + P Q V+ SAT + +
Sbjct: 536 TSSGKITNLRRVTYLVMDEADRMF--DMGFEPQITRIVQNIRPDRQTVLFSATFPRQVET 593
Query: 215 ITKKFMSDPVKILV-KRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLTITQCVIFCNT 273
+ +K ++ PV+I V R ++ D+ + V++ E +F L +L
Sbjct: 594 LARKVLNKPVEIQVGGRSVVNKDITQ--LVEIRPESERFSRLLELLG------------- 638
Query: 274 RKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQI 333
+W + + ++ +E+ ++DF+S +LI+T V ARG+DV+++
Sbjct: 639 ----EW---------YEKGKVLVFVRSQEKS--ISDFKSDVCNLLIATSVAARGLDVKEL 683
Query: 334 SLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIESHYRIKIKPTPAN 393
LV+N+D P++ E+Y+HR+GR+GR GRKG A+ FI++++ ++ + +P P +
Sbjct: 684 ELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLVKALELSEQPVPDD 743
Query: 394 LEELS 398
++ ++
Sbjct: 744 VKAVA 748
>At5g08620 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 563
Score = 155 bits (392), Expect = 1e-37
Identities = 106/383 (27%), Positives = 190/383 (48%), Gaps = 37/383 (9%)
Query: 25 FESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQA 84
F+ L P L+GI GF+ GKD++A+A++GTGKT F + ++A
Sbjct: 82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEA 141
Query: 85 I--------DSKSKELQALVLSPTRELASQSESVISNLGDYL-NVTAHACTGGKALQQDI 135
+ D++ + LV+ PTRELA Q+ + + L Y ++ GG L +
Sbjct: 142 VIKAPPASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYHPSIGVQVVIGGTKLPTEQ 201
Query: 136 KKVSKN-CQVVSGTPGRVLDMIKRQ---VLNVRNCKILVLDEADELLGETLGFKQQIYDI 191
+++ K+ CQ++ TPGR+ D I + K+LVLDEAD LL +GF+++I I
Sbjct: 202 RRLQKSPCQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLD--MGFRREIERI 259
Query: 192 FTKLPPTIQVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWK 251
+P Q + SAT+S ++ +I + +KRD ++ +++ + ++ +
Sbjct: 260 IAAVPKQRQTFLFSATVSDEVRQICH--------VALKRDHEFVNCVQEGAGETHQKVSQ 311
Query: 252 FDTLCDLYDSLTIT--------------QCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGD 297
+ L ++ + +IFC T ++ L + + +V +H
Sbjct: 312 MYMIASLDRHFSLLYGLLKKHITDNVGYKVIIFCTTAMVTRLVADLLGKLSLNVREIHSR 371
Query: 298 MKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGR 357
Q R +V ++FR K+ +L+++DV ARG+D +SLV+ +P + E YIHR+GR+GR
Sbjct: 372 KPQSYRTRVSDEFRKSKSIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGR 431
Query: 358 FGRKGVAINFITKEERPKLKEIE 380
G++G + + E L ++
Sbjct: 432 KGKEGEGVLLLAPWEEYFLSSVK 454
>CE23814 [A] KOG0340 ATP-dependent RNA helicase
Length = 696
Score = 155 bits (391), Expect = 1e-37
Identities = 99/323 (30%), Positives = 173/323 (52%), Gaps = 11/323 (3%)
Query: 67 AQSGTGKTATFTIGLLQAIDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACT 126
A++GTGKT F I +LQ + + AL+L+PTRELA Q + LG + +
Sbjct: 190 ARTGTGKTLAFAIPILQKLSVDPYGIYALILTPTRELAFQIAEQFTALGKPITLKCSVIV 249
Query: 127 GGKALQQDIKKVSKNCQVVSGTPGRVLDMIKRQVLNV----RNCKILVLDEADELLGETL 182
GG++L +++S+ VV TPGR+ D+I+ + + + VLDEAD +L
Sbjct: 250 GGRSLIHQARELSERPHVVVATPGRLADLIESDPDTIAKVFKKIQFFVLDEADRMLEGQ- 308
Query: 183 GFKQQIYDIFTKLPPTIQVVVVSATMSKDILEITKKFMSDPV--KILVKRDEISLDVIKQ 240
+ Q+ IF + Q +++SAT++ +I + + P + K DE ++D ++Q
Sbjct: 309 -YNDQLKPIFESISEKRQTLLLSATITNNINMLHRVSTRKPYFFEDKGKDDESTVDRLEQ 367
Query: 241 YYVDVE---KEEWKFDTLCDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGD 297
YV K+ + + + + + +IF T ++ L+ F V S+H
Sbjct: 368 KYVVCPVAVKDAYLVYVVKNYSEKNPKSSVMIFAQTCRECQALAYMFEGLGFRVGSLHSQ 427
Query: 298 MKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGR 357
+ Q++R ++ FRS +V+I TDV +RG+D+ + LV+N+++P + YIHR+GRS R
Sbjct: 428 IPQKQRLAALSAFRSKTLQVIICTDVASRGLDIPHVDLVVNHNVPQCPKTYIHRVGRSAR 487
Query: 358 FGRKGVAINFITKEERPKLKEIE 380
GR G A++F+T+ + L+ +E
Sbjct: 488 AGRFGSALSFVTQYDVELLQAVE 510
>Hs9506931 [A] KOG0346 RNA helicase
Length = 547
Score = 154 bits (390), Expect = 2e-37
Identities = 112/395 (28%), Positives = 194/395 (48%), Gaps = 41/395 (10%)
Query: 25 FESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQA 84
FE M L P LL+ + G+ P GKD++A+A++G+GKTA + I +LQ
Sbjct: 9 FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQL 68
Query: 85 IDSK-------SKELQALVLSPTRELASQSESVISNLGDYL--NVTAHACTGGKALQQDI 135
+ + + ++ LVL PT+ELA Q++S+I L Y +V + +
Sbjct: 69 LLHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVANVSAAEDSVSQR 128
Query: 136 KKVSKNCQVVSGTPGRVLDMIKRQVLNVR-NCKILVLDEADELLGETLGFKQQIYDIFTK 194
+ + VV GTP R+L +++ L +R + ++LV+DEAD L + GF++++ +
Sbjct: 129 AVLMEKPDVVVGTPSRILSHLQQDSLKLRDSLELLVVDEADLLF--SFGFEEELKSLLCH 186
Query: 195 LPPTIQVVVVSATMSKDILEITKKFMSDPVKILVKRDEI-SLDVIKQYYVDVEKEEWKFD 253
LP Q ++SAT ++D+ + + + +PV + ++ ++ D ++Q+ V E EE KF
Sbjct: 187 LPRIYQAFLMSATFNEDVQALKELILHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFL 246
Query: 254 TLCDLYD-SLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRS 312
L L SL + ++F NT ++ L L Q + ++G++ R +++ F
Sbjct: 247 LLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLRSRCHIISQFNQ 306
Query: 313 GKARVLISTDV---------------------------WARGIDVQQISLVINYDIPDNL 345
G +I+TD ARGID +S V+N+D+P
Sbjct: 307 GFYDCVIATDAEVLGAPVKGKRRGRGPKGDKASDPEAGVARGIDFHHVSAVLNFDLPPTP 366
Query: 346 ENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIE 380
E YIHR GR+ R G+ + F+ E+ L +IE
Sbjct: 367 EAYIHRAGRTARANNPGIVLTFVLPTEQFHLGKIE 401
>SPAC1093.05 [A] KOG0343 RNA Helicase
Length = 735
Score = 153 bits (387), Expect = 4e-37
Identities = 101/331 (30%), Positives = 179/331 (53%), Gaps = 13/331 (3%)
Query: 60 GKDVIAQAQSGTGKTATFTIGLLQAIDSKS----KELQALVLSPTRELASQSESVISNLG 115
G+D++ A++G+GKT F + L++ + K L ALV+SPTRELA Q+ + +G
Sbjct: 76 GRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELAIQTFETLVKIG 135
Query: 116 DYLNVTAHACTGGKALQQDIKKVSKNCQVVSGTPGRVLDMIKRQV-LNVRNCKILVLDEA 174
+ +A GG +++ +++S+ ++ TPGR+L I + V + ++L+LDEA
Sbjct: 136 RLHSFSAGLIIGGNNYKEEKERLSR-MNILVCTPGRLLQHIDQAVNFDTSGLQMLILDEA 194
Query: 175 DELLGETLGFKQQIYDIFTKLPPTIQVVVVSATMSKDILEITKKFMSDPVKILVKRDEIS 234
D +L +GF+ + I + LP Q ++ SAT +K + ++ + + +P I V ++ S
Sbjct: 195 DRILD--MGFRTTLDAIVSSLPVHRQTMLFSATQTKSVKDLARLSLQNPDFISVHENDTS 252
Query: 235 LDV--IKQYYVDVEKEEWKFDTLCDLYDSLTITQCVIFCNTRKKVDWLSR--KLTQTNFS 290
+ Q+Y+ V E K D L + + ++F ++ K+V ++ + + S
Sbjct: 253 STPSNLNQFYLTVPLTE-KLDILFGFIRTHLKFKTIVFLSSCKQVRFVYETFRRMRPGIS 311
Query: 291 VSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIH 350
+ +HG KQ R +V F S + VL TD+ ARG+D + VI D P++++ YIH
Sbjct: 312 LLHLHGKQKQTTRTEVTAKFTSSRHVVLFCTDIVARGLDFPAVDWVIQLDAPEDVDTYIH 371
Query: 351 RIGRSGRFGRKGVAINFITKEERPKLKEIES 381
R+GR+ R+ R G A+ + E LK +ES
Sbjct: 372 RVGRTARYNRSGNALLLLLPSEEAFLKRLES 402
>7303950 [A] KOG0340 ATP-dependent RNA helicase
Length = 521
Score = 153 bits (386), Expect = 5e-37
Identities = 112/374 (29%), Positives = 182/374 (47%), Gaps = 10/374 (2%)
Query: 25 FESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQA 84
F+ + L+P L++ + G + G+D I A++G+GKT F + +L+
Sbjct: 9 FQILGLRPWLVKQLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILER 68
Query: 85 IDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQV 144
+ + ALVL+PT ELA Q G + V +GG + +K+ + +
Sbjct: 69 LSEEPVSHFALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMVESQKLMQRPHI 128
Query: 145 VSGTPGRVLDMIKR-QVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVVV 203
V PGR+ D + + N K LV+DEAD +L F + + I LP T Q +
Sbjct: 129 VVAMPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGD--FDESLSIIERCLPKTRQNLF 186
Query: 204 VSATMSKDILEITKKF--MSDPVKILVKRDEISLDVIKQYYV---DVEKEEWKFDTLCDL 258
SATM KD ++ + F SD + D +++ + Q Y+ D +++ + L
Sbjct: 187 FSATM-KDFIKESSIFPIASDCFEWSQDSDVATVETLDQRYLLCADYDRDMVLIEALRKY 245
Query: 259 YDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVL 318
+ +IF NT+K LS L +HG M+Q+ER ++ F+S + R L
Sbjct: 246 REENENANVMIFTNTKKYCQLLSMTLKNMEIDNVCLHGFMRQKERVAALSRFKSNQIRTL 305
Query: 319 ISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAIN-FITKEERPKLK 377
I+TDV ARG+D+ + LV+N+ +P + YIHR+GR+ R GRKG++I+ F + L
Sbjct: 306 IATDVAARGLDIPSVELVMNHMLPRTPKEYIHRVGRTARAGRKGMSISIFRFPRDLELLA 365
Query: 378 EIESHYRIKIKPTP 391
IE K+ P
Sbjct: 366 AIEEEINTKLTEHP 379
>CE25121 [A] KOG0335 ATP-dependent RNA helicase
Length = 763
Score = 152 bits (385), Expect = 6e-37
Identities = 107/374 (28%), Positives = 182/374 (48%), Gaps = 28/374 (7%)
Query: 24 TFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLL- 82
TF NL + + + G+ G D++A AQ+G+GKTA F + ++
Sbjct: 342 TFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLLPIMT 401
Query: 83 QAIDSKSKEL--------QALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQD 134
+ ID + + ++L+PTRELA Q + + GG A+ +
Sbjct: 402 RLIDDNNLNTAGEGGCYPRCIILTPTRELADQIYNEGRKFAYQTMMEIKPVYGGLAVGYN 461
Query: 135 IKKVSKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDI--F 192
++ K ++ GT GR+ + + + C+ VLDEAD ++ + +GF I I +
Sbjct: 462 KGQIEKGATIIVGTVGRIKHFCEEGTIKLDKCRFFVLDEADRMI-DAMGFGTDIETIVNY 520
Query: 193 TKLP--PTIQVVVVSATMSKDILEITKKFMSDP-VKILVKRDEISLDVIKQYYVDVEKEE 249
+P Q ++ SAT + E + F+ + V I + + + + Q + E+ E
Sbjct: 521 DSMPRKENRQTLMFSATFPDSVQEAARAFLRENYVMIAIDKIGAANKCVLQEFERCERSE 580
Query: 250 WKFDTLCDLY----DSLTITQC--------VIFCNTRKKVDWLSRKLTQTNFSVSSMHGD 297
K D L +L DS T + ++F + R D L+ L+ ++HG
Sbjct: 581 KK-DKLLELLGIDIDSYTTEKSAEVYTKKTMVFVSQRAMADTLASILSSAQVPAITIHGA 639
Query: 298 MKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGR 357
+Q ER + + FR+G VLI+T V RG+D++ + VINYD+PDN+++YIHRIGR+GR
Sbjct: 640 REQRERSEALRQFRNGSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTGR 699
Query: 358 FGRKGVAINFITKE 371
G G A +FI+++
Sbjct: 700 VGNSGRATSFISED 713
>7293941 [A] KOG0344 ATP-dependent RNA helicase
Length = 594
Score = 152 bits (385), Expect = 6e-37
Identities = 105/354 (29%), Positives = 180/354 (50%), Gaps = 6/354 (1%)
Query: 32 PDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQAIDS-KSK 90
P L + + F++P + ++A A +G+GKT F ++ + + K+
Sbjct: 128 PRLQQNLLSRNFDHPTPIQMQALPVLLQRRALMACAPTGSGKTLAFLTPIINGLRAHKTT 187
Query: 91 ELQALVLSPTRELASQSESVISNLGDYLNVTAHACTG-GKALQQDIKKVSKNCQVVSGTP 149
L+ALVL+PTRELA Q + L + H + +A Q+ + + ++ TP
Sbjct: 188 GLRALVLAPTRELAQQIYRECAELTRETGLRTHFISKVSEAKQKHGAECKQRYDILVSTP 247
Query: 150 GRVLDMIKRQ--VLNVRNCKILVLDEADELLGETLG-FKQQIYDIFTKLP-PTIQVVVVS 205
RV +++++ +L++ + + VLDEAD L+ E FK+Q+ DI+ PT V S
Sbjct: 248 NRVRFLLQQEPPLLDLSHVEWFVLDEADRLMEEGQNNFKEQLDDIYAACSNPTKCVAFFS 307
Query: 206 ATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLTIT 265
AT + + + + + + V+I + + + ++Q + V E K + DL
Sbjct: 308 ATYTVPVAKWALRHLKNLVRITIGVQNSATETVQQELLFVGSEGGKLVAIRDLVRQGLQP 367
Query: 266 QCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWA 325
++F ++++ L +L +V +H + Q +RD + FR G VLI T++
Sbjct: 368 PVLVFVQSKERAKQLFEELLYDGINVDVIHAERSQHQRDNCVKAFREGSIWVLICTELMG 427
Query: 326 RGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEI 379
RGID + ++LVINYD P +YIHRIGR+GR GR G AI F T+E+ L+ I
Sbjct: 428 RGIDFKGVNLVINYDFPPTTISYIHRIGRTGRAGRPGRAITFFTQEDTSNLRGI 481
>At1g12770_1 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 543
Score = 152 bits (383), Expect = 1e-36
Identities = 108/417 (25%), Positives = 191/417 (44%), Gaps = 64/417 (15%)
Query: 24 TFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQ 83
+FE + L LL + GF P G D + Q+ +G+GKT + + +L
Sbjct: 111 SFEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILS 170
Query: 84 AI-------------DSKSKELQALVLSPTRELASQSESVISNL-GDYLNVTAHACTGGK 129
I + K E+QA++++P+REL Q + L G GG
Sbjct: 171 EIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVEKLLGPVHRRMVQQLVGGA 230
Query: 130 ALQQDIKKVSKNCQ-VVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQI 188
+ + + KN +V GTPGR+ ++ K L+ C+ LVLDE DELL + F++ I
Sbjct: 231 NRMRQEEALKKNKPAIVVGTPGRIAEISKGGKLHTHGCRFLVLDEVDELL--SFNFREDI 288
Query: 189 YDIFTKLPPTI--------------QVVVVSATMSKDILEITKKFMSDPVKILVKRDEIS 234
+ I + Q ++VSAT+ ++ K + +PV LV+ ++++
Sbjct: 289 HRILEHVGKRSGAGPKGEVDERANRQTILVSATVPFSVIRAAKSWSHEPV--LVQANKVT 346
Query: 235 -LDVIK------------------------------QYYVDVEKEEWKFDTLCDLYDSLT 263
LD ++ ++Y + K + K DTL +L
Sbjct: 347 PLDTVQPSAPVMSLTPTTSEADGQIQTTIQSLPPALKHYYCISKHQHKVDTLRRCVHALD 406
Query: 264 ITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDV 323
+ F N +++ + KL + + MHGD+ + R V+ F++G+ +VL++ ++
Sbjct: 407 AQSVIAFMNHSRQLKDVVYKLEARGMNSAEMHGDLGKLGRSTVLKKFKNGEIKVLVTNEL 466
Query: 324 WARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIE 380
ARG+DV + LV+N ++P + +Y HR GR+GR GRKG + + + +K++E
Sbjct: 467 SARGLDVAECDLVVNLELPTDAVHYAHRAGRTGRLGRKGTVVTVCEESQVFIVKKME 523
>ECU10g1680 [A] KOG0343 RNA Helicase
Length = 452
Score = 151 bits (382), Expect = 1e-36
Identities = 109/370 (29%), Positives = 185/370 (49%), Gaps = 15/370 (4%)
Query: 25 FESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQA 84
FE + + + +G+ GF G D+I +Q+GTGKT F + LQ
Sbjct: 6 FEDLKIDQRIEKGLRENGFVSMKEVQQKVIPMALEGHDIIGSSQTGTGKTLAFLVPTLQR 65
Query: 85 IDSKS----KELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSK 140
+ S L LV++PTRELA Q V+S + Y ++ GG + ++ KV++
Sbjct: 66 LVSLGWGGGDGLGCLVITPTRELALQIFDVLSRIAKYTVLSTGLIMGGLEAEDELLKVNQ 125
Query: 141 NCQVVSGTPGRVLDMIKRQ-VLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTI 199
++ TPGR+L ++ L+ N +IL+LDEAD+++ +GFK+ + DI +P
Sbjct: 126 -MNILVCTPGRLLQHLQENPYLSTANVQILILDEADKMI--EMGFKEVLEDILEYIPQKK 182
Query: 200 QVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLY 259
Q ++ SAT I K + DP I + ++E ++QY+ + + K + L
Sbjct: 183 QTLLFSATPKASTARILK--LEDPRIISIYKEEGFPSQLRQYFYMMRTGD-KINYLHTFI 239
Query: 260 DSLTITQCVIFCNTRKKVDW---LSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKAR 316
S + ++F +T K+V + L +L N + + G M Q++R V F K
Sbjct: 240 GSNPEVKGIVFFSTCKEVKFHCLLFERLKLRN-RIFCLSGGMSQKQRIDVFKRFVKEKNG 298
Query: 317 VLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKL 376
+L TD+ +RG+D ++ +VI YD P N+E Y+HR+GR+ R +G + ++ E L
Sbjct: 299 ILFCTDLGSRGLDFPKVDVVIQYDCPCNVETYVHRVGRTARNSERGESYVYLVHGEEKLL 358
Query: 377 KEIESHYRIK 386
+I+ IK
Sbjct: 359 TDIQKKGWIK 368
>7299006 [A] KOG0345 ATP-dependent RNA helicase
Length = 613
Score = 151 bits (382), Expect = 1e-36
Identities = 108/380 (28%), Positives = 194/380 (50%), Gaps = 25/380 (6%)
Query: 30 LKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQAIDSKS 89
L +L+ + +GF+ KDV A+A +G+GKT F + +L+ + +
Sbjct: 14 LSDAVLQVVQSFGFQQMTPVQTAAIPLLLARKDVSAEAVTGSGKTLAFLVPMLEILQRRH 73
Query: 90 KE-------LQALVLSPTRELASQSESVISNL---GDYLNVTAHACTGGKALQQDIKKVS 139
KE + ALV+SPTRELA Q V++ D ++ GG ++++DI +
Sbjct: 74 KETPWGPKEIGALVISPTRELARQISEVLAQFLEHEDLEHLNQQLIVGGNSIEEDIATLR 133
Query: 140 KNCQ-VVSGTPGRVLDMIKRQ------VLNVRNCKILVLDEADELLGETLGFKQQIYDIF 192
+ ++ TPGR+ D+ +R+ V++ + LVLDEAD LL LGFK + +I
Sbjct: 134 RETPCILVCTPGRLEDLFQRKGDDLNLAAQVKSLEFLVLDEADRLLD--LGFKTSVNNIL 191
Query: 193 TKLPPTIQVVVVSATMSKDILEITKKFMSDPVKILVK-RDEISLDVIKQYYVDVEKEEWK 251
LP + + SAT + ++ ++ + + +PV + VK + ++ Q + + + E K
Sbjct: 192 GYLPRQRRTGLFSATQTTEVTDLIRAGLRNPVLVSVKEKASVNTPARLQNFYRIVEPELK 251
Query: 252 FDTLCDLYDS--LTITQCVIFCNTRKKVDWLSRKLTQT--NFSVSSMHGDMKQEERDQVM 307
F L + S I + ++F T V++ + L +V +HG MK + R V+
Sbjct: 252 FVALLEFLSSPATVIGKVMVFFPTCACVEYWAEALPPLLPKRTVLGIHGKMKNK-RANVV 310
Query: 308 NDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINF 367
FR+ VL+ TDV ARG+DV +I V+ +D P +++HR+GR+ R G +G A+ F
Sbjct: 311 EKFRNTPQAVLLCTDVLARGLDVPEIEWVVQWDPPSTASSFVHRVGRTARQGNEGNALVF 370
Query: 368 ITKEERPKLKEIESHYRIKI 387
+ E + ++ + ++++
Sbjct: 371 LLPSEDAYVHFLKINQKVEL 390
>CE03821 [A] KOG0345 ATP-dependent RNA helicase
Length = 578
Score = 150 bits (378), Expect = 4e-36
Identities = 98/338 (28%), Positives = 176/338 (51%), Gaps = 15/338 (4%)
Query: 62 DVIAQAQSGTGKTATFTIGLLQAIDS---KSKELQALVLSPTRELASQSESVISNLGDYL 118
DV+ ++ +G+GKT F + +++ I + + ++ AL+LSP+REL SQ SVI + L
Sbjct: 48 DVVVESPTGSGKTLAFVLPMMRMIQNAKLQPADIGALILSPSRELCSQIVSVIQPFAEKL 107
Query: 119 NVTAHACTGGKALQQDIKKV-SKNCQVVSGTPGRVLDMIKRQ----VLNVRNCKILVLDE 173
N+T TGG+ + ++IK +KN ++ TPGR+ +I+ + +R ++LV+DE
Sbjct: 108 NLTVETVTGGQKVDKNIKMFKNKNVNILVATPGRLFQIIQHEKTLIARKMRTLQLLVIDE 167
Query: 174 ADELLGETLGFKQQIYDIFTKLPPTIQVVVVSATMSK--DILEITKKFMSDPVKILVKRD 231
AD + F+ + +I + +P + + SAT K D L + + VK+ +R+
Sbjct: 168 ADRF--NEIQFEDHMREILSCIPKQRRTGLFSATQVKEEDDLMVFGLRNAKQVKVAQERN 225
Query: 232 EISLDVIKQYYVDVEKEEWKFDTLCDLYDSLTITQCVIFCNTRKKVDWLSRKLTQT--NF 289
+ +K YYV+ +E K + T + +IF + V + + +
Sbjct: 226 SAAPSTLKNYYVECRADE-KTSVCLEFIRQRTDKKILIFFPSCNSVRYFYKIFERCLGKR 284
Query: 290 SVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYI 349
+ ++HG R + F V+ISTDV ARGID+ I VI +D+P + ++
Sbjct: 285 PLFAVHGKCSNPHRASQIKAFSDSTNGVMISTDVMARGIDISDIDWVIQFDLPKHSSWFV 344
Query: 350 HRIGRSGRFGRKGVAINFITKEERPKLKEIESHYRIKI 387
HR GR+ R GR+G A+ I E+ + +++H ++K+
Sbjct: 345 HRAGRTARCGREGNALILIASEQLAYVNFLDNHEKVKL 382
>CE26853 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 544
Score = 149 bits (376), Expect = 7e-36
Identities = 109/369 (29%), Positives = 186/369 (49%), Gaps = 14/369 (3%)
Query: 24 TFESMNLK--PDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATF---T 78
TF S+ K +LL+ + GF GKDV+A A++G+GKT F
Sbjct: 67 TFASLEGKVNANLLKAVQGLGFTTMTEIQAKSIDPLLEGKDVLASAKTGSGKTLAFLLPA 126
Query: 79 IGLLQAIDSKSKE-LQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKK 137
I LL ++ K +++SPTREL+ Q+ V+S L + N+T GG + K
Sbjct: 127 IELLHKLNWKQHNGTGVIIVSPTRELSMQTYGVLSELLEGSNLTYGLVMGGSNRSAEKDK 186
Query: 138 VSKNCQVVSGTPGRVLDMIKR-QVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLP 196
++K ++ TPGR+LD ++ VRN K L++DEAD +L +GF+ ++ + LP
Sbjct: 187 LAKGVSILVATPGRLLDHLQNTDNFLVRNMKCLIIDEADRILD--IGFEIEMQQVLRHLP 244
Query: 197 PTIQVVVVSATMSKDILEITKKFM-SDPVKILV--KRDEISLDVIKQYYVDVEKEEWKFD 253
Q ++ SAT S + E+ K + S+PV++ V K +E +++ ++Q Y+ V + +
Sbjct: 245 KQRQSMLFSATHSPKVDELVKLALHSNPVRVSVHEKAEEATVEGLQQGYI-VAPSDKRLL 303
Query: 254 TLCDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSG 313
L + ++F ++ V + L + S+HG KQ++R F
Sbjct: 304 LLFTFLKKNKTKKVMVFFSSCNSVKFHHELLNYIDIPCMSIHGKQKQQKRTTTFFQFCQA 363
Query: 314 KARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGR-FGRKGVAINFITKEE 372
+ +L+ TDV ARG+D+ + ++ YD D YIHR+GR+ R G A+ + EE
Sbjct: 364 ETGILLCTDVAARGLDIPAVDWIVQYDPTDEPREYIHRVGRTARGTNGSGKALLVLRPEE 423
Query: 373 RPKLKEIES 381
L+ +++
Sbjct: 424 LGFLRYLKA 432
>CE11402 [A] KOG0334 RNA helicase
Length = 995
Score = 149 bits (376), Expect = 7e-36
Identities = 101/358 (28%), Positives = 182/358 (50%), Gaps = 39/358 (10%)
Query: 60 GKDVIAQAQSGTGKTATFTIGLLQAI-----DSKSKELQ-----ALVLSPTRELASQSES 109
G DV+ QA++ GKTA F + ++ I ++++K Q AL+L+PTRELA+Q
Sbjct: 418 GHDVLGQAETSAGKTAAFGLPIIDKILRMDEETRNKARQDDGPLALILAPTRELAAQIHE 477
Query: 110 VISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQVVSGTPGRVLDMIKRQVLNVRNCKIL 169
+ ++ G + + ++ C ++ GT GR++D + +++ + + L
Sbjct: 478 ALRTYCQNTDIIVLLSYGQSDRARSLNEIRNGCDILIGTCGRIMDFTVKSHISLLHLRFL 537
Query: 170 VLDEADELLGET----LGFKQQIYDI--FTKLPPTIQVVVVSATMSKDILEITKKFMS-- 221
V DEAD LL + LG I F + T Q ++ SAT + ++ + + M
Sbjct: 538 VFDEADRLLQDMKKDPLGHLGAIIKDAGFMESAATRQTIMTSATFNASVMTVANELMKRL 597
Query: 222 ----DPVKILVKRDEISLDVIKQYYVD---VEKEEWKFDTLCDLYDSLTITQCVIFCNTR 274
+ +KI++ +S V +++ EK + L + T+ + +IF +
Sbjct: 598 PGQDEMIKIVLANGRLSKRVNLEFFECKGLAEKNAKLREILKQNVNGKTL-KTIIFVQKK 656
Query: 275 KKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQIS 334
+ D + KLT ++HGD Q+ R++++NDF+S + +L++TD+ +RGIDV +
Sbjct: 657 DQCDACAAKLTSGGMLAQTLHGDRSQDMREKLINDFKSNRVNLLVTTDLLSRGIDVSDLD 716
Query: 335 LVINYDIPD-----NLENYIHRIGRSGRFGRK--GVAINFITKEE------RPKLKEI 379
VIN+D+PD + +IHR GR+GR GRK G+ ++F+ + PKL E+
Sbjct: 717 RVINFDLPDGDPDQGADTFIHRAGRTGRTGRKENGLCVSFVDPQSDRDSLLAPKLVEL 774
>YFL002c [A] KOG0345 ATP-dependent RNA helicase
Length = 606
Score = 147 bits (372), Expect = 2e-35
Identities = 105/367 (28%), Positives = 170/367 (45%), Gaps = 28/367 (7%)
Query: 29 NLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQAIDS- 87
+L P + G+ GFE KDV+ + +G+GKTA F I +L+ +
Sbjct: 13 SLLPWIRTGLDVMGFETMTPVQASTIPMLAGNKDVVVDSVTGSGKTAAFVIPVLEKVVKE 72
Query: 88 -------KSKELQALVLSPTRELASQSESVISNL-----GDYLNVTAHACTGGK--ALQQ 133
K +L+++PTREL+ Q ESV+ + D + G ++
Sbjct: 73 EANTSKFKKAHFHSLIIAPTRELSRQIESVVLSFLEHYPSDLFPIKCQLLVGTNEATVRD 132
Query: 134 DIKKVSKNC-QVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIF 192
D+ +N Q++ GTPGRVLD ++ + C ++V+DEAD LL + F + I
Sbjct: 133 DVSNFLRNRPQILIGTPGRVLDFLQMPAVKTSACSMVVMDEADRLLD--MSFIKDTEKIL 190
Query: 193 TKLPPTIQVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKF 252
LP + + SATM +I K + +PV+I V + +K Y V E K
Sbjct: 191 RLLPKQRRTGLFSATMRSAGSDIFKTGLRNPVRITVNSKNQAPSSLKLNYCVVNPAE-KL 249
Query: 253 DTLCDLYDSLTITQCVIFCNTRKKVDWL--------SRKLTQTNFSVSSMHGDMKQEERD 304
L + ++ +C+++ T V + R + + S+HG ++ R
Sbjct: 250 QLLVSILNNYKFKKCIVYFPTCVSVSYFYSFIQYLGKRNILVNEVEIFSLHGKLQTSART 309
Query: 305 QVMNDFRSGKAR-VLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGV 363
+ + F + VL +TDV ARGID+ + LVI D P N + ++HR GR+GR R G
Sbjct: 310 KTLTAFTDSLSNSVLFTTDVAARGIDIPDVDLVIQLDPPTNTDMFMHRCGRTGRANRVGK 369
Query: 364 AINFITK 370
AI F+ +
Sbjct: 370 AITFLNE 376
>At5g62190 [A] KOG0331 ATP-dependent RNA helicase
Length = 671
Score = 147 bits (371), Expect = 3e-35
Identities = 104/352 (29%), Positives = 176/352 (49%), Gaps = 38/352 (10%)
Query: 60 GKDVIAQAQSGTGKTATFTIGLLQAI---DSKSKELQA-------LVLSPTRELASQSES 109
G D++ +A++G GKT F + +L+++ +KSK LVL PTRELA Q +
Sbjct: 133 GADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAA 192
Query: 110 VISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQVVSGTPGRVLDMIKRQVLNVRNCKIL 169
G L +++ GG + K+ + +V GTPGR+ D I+RQ L+ +
Sbjct: 193 DFDAYGGSLGLSSCCLYGGDSYPVQEGKLKRGVDIVVGTPGRIKDHIERQNLDFSYLQFR 252
Query: 170 VLDEADELLGETLGFKQQIYDIFTKLPPT--IQVVVVSATMSKDILEITKKFMSDPVKIL 227
VLDEADE+L +GF + + I K+ + +Q ++ SAT+ + I+ +F+
Sbjct: 253 VLDEADEML--RMGFVEDVELILGKVEDSTKVQTLLFSATLPSWVKNISNRFL------- 303
Query: 228 VKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLTIT-----------QCVIFCNTRKK 276
KRD+ ++D++ + C+ + Q +IF T+ +
Sbjct: 304 -KRDQKTIDLVGNDKMKASNSVRHIAIPCNKAAMARLIPDIISCYSSGGQTIIFAETKVQ 362
Query: 277 VDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLV 336
V LS L + ++HG++ Q +R+ + FR+GK L++T+V ARG+D+ + L+
Sbjct: 363 VSELSGLLDGSR----ALHGEIPQSQREVTLAGFRNGKFATLVATNVAARGLDINDVQLI 418
Query: 337 INYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIESHYRIKIK 388
I + P +E YIHR GR+GR G GVA+ + + + IE IK +
Sbjct: 419 IQCEPPREVEAYIHRSGRTGRAGNTGVAVT-LYDSRKSSVSRIEKEAGIKFE 469
>YMR290c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 505
Score = 146 bits (369), Expect = 5e-35
Identities = 103/367 (28%), Positives = 187/367 (50%), Gaps = 13/367 (3%)
Query: 25 FESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQA 84
FE + L L+ I GF G+DV+ A++G+GKT F I ++
Sbjct: 44 FEELKLSQPTLKAIEKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEL 103
Query: 85 IDS-KSKELQA---LVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSK 140
+ S K K +V++PTRELA Q V L ++ + T GG +Q+ +K+ K
Sbjct: 104 LHSLKFKPRNGTGIIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEAEKLMK 163
Query: 141 NCQVVSGTPGRVLDMIKRQVLNV-RNCKILVLDEADELLGETLGFKQQIYDIFTKLP-PT 198
++ TPGR+LD ++ V +N K L++DEAD +L +GF+ ++ I LP
Sbjct: 164 GVNMLIATPGRLLDHLQNTKGFVFKNLKALIIDEADRIL--EIGFEDEMRQIIKILPNED 221
Query: 199 IQVVVVSATMSKDILEITKKFMSDP---VKILVKRDEISLDVIKQYYVDVEKEEWKFDTL 255
Q ++ SAT + + ++ + + + ++ + D + D ++Q YV + ++ +F L
Sbjct: 222 RQSMLFSATQTTKVEDLARISLRPGPLFINVVPETDNSTADGLEQGYVVCDSDK-RFLLL 280
Query: 256 CDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKA 315
+ ++F ++ V + + L + V +HG KQ++R +F + +
Sbjct: 281 FSFLKRNQKKKIIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAER 340
Query: 316 RVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGR-KGVAINFITKEERP 374
+LI TDV ARG+D+ + +I +D PD+ +YIHR+GR+ R + KG ++ F+T E
Sbjct: 341 GILICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTKGKGKSLMFLTPNELG 400
Query: 375 KLKEIES 381
L+ +++
Sbjct: 401 FLRYLKA 407
>CE09012 [A] KOG0335 ATP-dependent RNA helicase
Length = 974
Score = 146 bits (369), Expect = 5e-35
Identities = 104/375 (27%), Positives = 180/375 (47%), Gaps = 30/375 (8%)
Query: 24 TFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLL- 82
TF NL + + + G+ G D++A AQ+G+GKTA F + ++
Sbjct: 553 TFSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMACAQTGSGKTAAFLLPIMA 612
Query: 83 QAIDSKSKEL--------QALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQD 134
+ ID + ++L+PTREL Q + + GG A+ +
Sbjct: 613 RLIDENDLNTAGEGGCYPRCIILTPTRELTDQIYNEGRKFAYQTMMEIRPVYGGLAVGYN 672
Query: 135 IKKVSKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDI--F 192
++ K ++ GT GR+ + + + C+ VLDEAD ++ + +GF I I +
Sbjct: 673 KGQIEKGATIIVGTVGRIKHFCEEGTIKLDKCRFFVLDEADRMI-DAMGFGTDIDTIVNY 731
Query: 193 TKLPP--TIQVVVVSATMSKDILEITKKFMSDPVKILVKRDEISL--DVIKQYYVDVEKE 248
+P Q ++ SAT + E + + + I++ D+I + Q + ++
Sbjct: 732 ESMPKKENRQTLMFSATFPDSVQEAARNHLKEGY-IMLAIDKIGAANKCVLQEFEKCDRS 790
Query: 249 EWKFDTLCDLY----DSLTITQ--------CVIFCNTRKKVDWLSRKLTQTNFSVSSMHG 296
E K D L ++ DS T + ++F + R D L+ L+ ++HG
Sbjct: 791 EKK-DKLLEILGIDIDSYTTEKNSEVYTKKTIVFVSQRAMADTLASILSSAQVPAITIHG 849
Query: 297 DMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSG 356
+Q ER + + FR+G VLI+T V RG+D++ + VINYD+PDN+++YIHRIGR+G
Sbjct: 850 AREQRERSEALRQFRNGSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTG 909
Query: 357 RFGRKGVAINFITKE 371
R G G A +FI+++
Sbjct: 910 RVGNAGRATSFISED 924
>At5g54910 [A] KOG0343 RNA Helicase
Length = 739
Score = 146 bits (369), Expect = 5e-35
Identities = 100/347 (28%), Positives = 184/347 (52%), Gaps = 13/347 (3%)
Query: 60 GKDVIAQAQSGTGKTATFTIGLLQAID----SKSKELQALVLSPTRELASQSESVISNLG 115
G+D++ A++G+GKT F I +L+ + S + +++SPTRELA+Q+ V++ +G
Sbjct: 108 GRDILGAARTGSGKTLAFVIPILEKLHRERWSPEDGVGCIIISPTRELAAQTFGVLNKVG 167
Query: 116 DYLNVTAHACTGGKALQQDIKKVSKNCQVVSGTPGRVLD-MIKRQVLNVRNCKILVLDEA 174
+ +A GG+ K+ ++ PGR+L M + +IL+LDEA
Sbjct: 168 KFHKFSAGLLIGGREGVDVEKERVHEMNILVCAPGRLLQHMDETPNFECPQLQILILDEA 227
Query: 175 DELLGETLGFKQQIYDIFTKLPPTIQVVVVSATMSKDILEITKKFMSDPVKILVKRDEIS 234
D +L FK Q+ I ++LP Q ++ SAT +K + ++ + + DP I V + ++
Sbjct: 228 DRVLDSA--FKGQLDPIISQLPKHRQTLLFSATQTKKVKDLARLSLRDPEYISVHAEAVT 285
Query: 235 LDVIK-QYYVDVEKEEWKFDTLCDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTN--FSV 291
V + E K D L + ++ ++F +T+K+V ++ + +
Sbjct: 286 ATPTSLMQTVMIVPVEKKLDMLWSFIKTHLNSRILVFLSTKKQVKFVHEAFNKLRPGIPL 345
Query: 292 SSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQ-ISLVINYDIPDNLENYIH 350
S+HG M QE+R V + F ++ VL TDV ARG+D + + V+ D P+++ +YIH
Sbjct: 346 KSLHGKMSQEKRMGVYSQFIERQS-VLFCTDVLARGLDFDKAVDWVVQVDCPEDVASYIH 404
Query: 351 RIGRSGRFGRKGVAINFITKEERPKLKEIESHYRIKIKPTPANLEEL 397
R+GR+ RF +G ++ F+T E +++++ ++ IK AN ++L
Sbjct: 405 RVGRTARFYTQGKSLLFLTPSEEKMIEKLQ-EAKVPIKLIKANNQKL 450
>YBR237w [A] KOG0334 RNA helicase
Length = 849
Score = 145 bits (365), Expect = 1e-34
Identities = 94/343 (27%), Positives = 171/343 (49%), Gaps = 32/343 (9%)
Query: 60 GKDVIAQAQSGTGKTATFTIGLLQAIDSK---SKEL---QALVLSPTRELASQSESVISN 113
G+DVI +++G+GKT ++ + LL+ + ++ SK L+L+PTRELA Q ++
Sbjct: 293 GRDVIGISKTGSGKTISYLLPLLRQVKAQRPLSKHETGPMGLILAPTRELALQIHEEVTK 352
Query: 114 LGDY-LNVTAHACTGGKALQQDIKKVSKNCQVVSGTPGRVLDMIKR---QVLNVRNCKIL 169
+ ++ + CTGG +++ I + + ++V TPGR +D++ ++L+ + +
Sbjct: 353 FTEADTSIRSVCCTGGSEMKKQITDLKRGTEIVVATPGRFIDILTLNDGKLLSTKRITFV 412
Query: 170 VLDEADELLGETLGFKQQIYDIFTKLPPTIQVVVVSATMSKDILEITKKFMSDPVKILVK 229
V+DEAD L LGF+ QI I + P Q V+ SAT + + + P+ I +
Sbjct: 413 VMDEADRLFD--LGFEPQITQIMKTVRPDKQCVLFSATFPNKLRSFAVRVLHSPISITIN 470
Query: 230 RDEISLDVIKQYYVDVEKEEWKFDTLCDL-------YDSLTI-------------TQCVI 269
+ + +KQ + E+ KFD L L +D + + +I
Sbjct: 471 SKGMVNENVKQKFRICHSEDEKFDNLVQLIHERSEFFDEVQSENDGQSSDVEEVDAKAII 530
Query: 270 FCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGID 329
F +++ D++S+KL ++H +ER + F+ K +L+ T+V +RG++
Sbjct: 531 FVSSQNICDFISKKLLNAGIVTCAIHAGKPYQERLMNLEKFKREKNSILLCTEVLSRGLN 590
Query: 330 VQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEE 372
V ++SLVI Y+ Y+H GR+ R R G AI + +E
Sbjct: 591 VPEVSLVIIYNAVKTFAQYVHTTGRTARGSRSGTAITLLLHDE 633
>Hs4826688 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 439
Score = 145 bits (365), Expect = 1e-34
Identities = 94/309 (30%), Positives = 161/309 (51%), Gaps = 9/309 (2%)
Query: 60 GKDVIAQAQSGTGKTATFTIGLLQAIDSKSKELQALVLSPTRELASQSESVISNLGDYLN 119
G ++ A +GTGKT F + +L ID K K+ Q L+L+P++ELA Q+ +V G ++
Sbjct: 32 GDNIFGLAPTGTGKTLAFLLPILSRIDPKVKQTQVLILAPSQELAMQTTAVAREWGALVD 91
Query: 120 VTAHACTGGKALQQDIKKVSKNC-QVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELL 178
V+ + GG ++ K+ K+ +V GT GRVL M+ L + + ++ DEAD +L
Sbjct: 92 VSVTSLIGGANGRRQADKLKKDKPHIVVGTLGRVLTMLDGGALKLNGLQTVIFDEADAML 151
Query: 179 GETLGFKQQIYDIFTKLPPTIQVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVI 238
+ + + + +LP +Q+ + SAT D+ + F + + V D +
Sbjct: 152 SDER--RDSLQALAAQLPTDVQLGLFSATSGVDLKYVADTFGQEVRPVSVGTDAPAAITH 209
Query: 239 KQYYVDVEKEEWKFDTLCDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSM-HGD 297
+ YVD ++ K L L + Q ++F NT + + L + SV S+ D
Sbjct: 210 EFQYVD---QKAKASLLIQL--ARNKQQALVFFNTISGLVNMQATLRHAHASVMSIGSND 264
Query: 298 MKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGR 357
+Q +R + F+ G+ +L+ TDV ARG+D++ + LV+N +P + YIHR GR+GR
Sbjct: 265 KRQVQRADALRLFKKGEVSLLLVTDVAARGLDIEDLPLVVNAQLPQRKKTYIHRAGRTGR 324
Query: 358 FGRKGVAIN 366
G+ G +N
Sbjct: 325 MGKPGRVLN 333
>CE07736 [A] KOG0335 ATP-dependent RNA helicase
Length = 720
Score = 145 bits (365), Expect = 1e-34
Identities = 104/374 (27%), Positives = 185/374 (48%), Gaps = 32/374 (8%)
Query: 24 TFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQ 83
+F ++ + R + G+ GKD++A AQ+G+GKTA F + ++
Sbjct: 299 SFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDILACAQTGSGKTAAFLLPIMS 358
Query: 84 AIDSKSKEL----------QALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQ 133
+ + K+L + ++L+PTRELA Q + + GG +
Sbjct: 359 RLILE-KDLNYGAEGGCYPRCIILTPTRELADQIYNEGRKFSYQSVMEIKPVYGGINVGY 417
Query: 134 DIKKVSKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDI-- 191
+ ++ K C ++ GT GRV + + + C+ LVLDEAD ++ +++GF +I I
Sbjct: 418 NKSQIMKGCTIIVGTIGRVKHFCEDGAIKLDKCRYLVLDEADRMI-DSMGFGPEIEQIIN 476
Query: 192 FTKLPPTI--QVVVVSATMSKDILEITKKFMSDPVKILV--KRDEISLDVIKQYYVDVEK 247
+ +P Q ++ SAT + E +K + + ++ K + VI+++ ++
Sbjct: 477 YKNMPKNDKRQTMMFSATFPSSVQEAARKLLREDYTMITIDKIGAANKCVIQEF--ELCD 534
Query: 248 EEWKFDTLCDLY----DSLT--------ITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMH 295
K D L L D+ T + + ++F +K D L+ ++ ++H
Sbjct: 535 RTSKVDKLLKLLGIDIDTYTTEKNSDVFVKKTIVFVAQQKMADTLASIMSAAQVPAITIH 594
Query: 296 GDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRS 355
G +Q+ER + FRSG VLI+T V RG+D++ + VINYD+P+N+++YIHRIGR+
Sbjct: 595 GAREQKERSAALKLFRSGAKPVLIATAVVERGLDIKGVDHVINYDMPNNIDDYIHRIGRT 654
Query: 356 GRFGRKGVAINFIT 369
GR G G A +FI+
Sbjct: 655 GRVGNSGRATSFIS 668
>At5g65900 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 633
Score = 144 bits (364), Expect = 2e-34
Identities = 111/381 (29%), Positives = 180/381 (47%), Gaps = 13/381 (3%)
Query: 24 TFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQ 83
TFES++L + + I GF G+DV+ A++G+GKT F I ++
Sbjct: 155 TFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAVE 214
Query: 84 AID----SKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVS 139
+ + LV+ PTRELA QS V L Y + T GG+ + + + ++
Sbjct: 215 LLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKELLKYHSQTVGKVIGGEKRKTEAEILA 274
Query: 140 KNCQVVSGTPGRVLDMIKR-QVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPT 198
K ++ TPGR+LD ++ +N K LV+DEAD +L + F++ + I LP T
Sbjct: 275 KGVNLLVATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQN--FEEDLKKILNLLPKT 332
Query: 199 IQVVVVSATMSKDILEITKKFMSDPVKILVK--RDEISLDVIKQYYVDVEKEEWKFDTLC 256
Q + SAT S + ++ + ++ PV I V R E++ + ++Q Y V L
Sbjct: 333 RQTSLFSATQSAKVEDLARVSLTSPVYIDVDEGRKEVTNEGLEQGYCVVPSAMRLLFLLT 392
Query: 257 DLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKAR 316
L + ++F +T K + + F + G + Q +R F +
Sbjct: 393 FLKRFQGKKKIMVFFSTCKSTKFHAELFRYIKFDCLEIRGGIDQNKRTPTFLQFIKAETG 452
Query: 317 VLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGR-FGRKGVAINFITKEERPK 375
+L+ T+V ARG+D + ++ YD PDN +YIHR+GR+ R G KG A+ +T +E
Sbjct: 453 ILLCTNVAARGLDFPHVDWIVQYDPPDNPTDYIHRVGRTARGEGAKGKALLVLTPQE--- 509
Query: 376 LKEIESHYRIKIKPTPANLEE 396
LK I+ KI EE
Sbjct: 510 LKFIQYLKAAKIPVEEHEFEE 530
>7300808 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 663
Score = 144 bits (364), Expect = 2e-34
Identities = 99/356 (27%), Positives = 179/356 (49%), Gaps = 12/356 (3%)
Query: 35 LRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQAIDS----KSK 90
LR I GF G+D++ AQ+G+GKT F I ++ I+
Sbjct: 182 LRAIKEMGFTEMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLAFLIPAVELINKLRFMPRN 241
Query: 91 ELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQVVSGTPG 150
+++SPTREL+ Q+ V+ L + + T GG Q + +K+ K ++ TPG
Sbjct: 242 GTGVIIISPTRELSMQTFGVLKELMAHHHHTYGLVMGGSNRQVESEKLGKGINILVATPG 301
Query: 151 RVLDMIKRQV-LNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVVVVSATMS 209
R+LD ++ +N + L++DE D +L +GF++++ I LP Q ++ SAT +
Sbjct: 302 RLLDHLQNSPDFLYKNLQCLIIDEVDRIL--EIGFEEELKQIINLLPKRRQTMLFSATQT 359
Query: 210 KDILEITKKFM-SDPVKILV--KRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLTITQ 266
I ++K + S+P+ + V +D ++D ++Q Y+ E+ + L +
Sbjct: 360 ARIEALSKLALKSEPIYVGVHDNQDTATVDGLEQGYIVCPSEK-RLLVLFTFLKKNRKKK 418
Query: 267 CVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWAR 326
++F ++ V + + V+S+HG KQ +R F + ++ +L+ TDV AR
Sbjct: 419 VMVFFSSCMSVKYHHELFNYIDLPVTSIHGKQKQTKRTTTFFQFCNAESGILLCTDVAAR 478
Query: 327 GIDVQQISLVINYDIPDNLENYIHRIGRSGR-FGRKGVAINFITKEERPKLKEIES 381
G+D+ Q+ ++ YD PD+ YIHR+GR+ R G G A+ + EE L+ +++
Sbjct: 479 GLDIPQVDWIVQYDPPDDPREYIHRVGRTARGSGTSGHALLLMRPEELGFLRYLKA 534
>SPAC1F7.02c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 578
Score = 140 bits (353), Expect = 3e-33
Identities = 105/368 (28%), Positives = 186/368 (50%), Gaps = 15/368 (4%)
Query: 25 FESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATF---TIGL 81
F + L ++ + I GFE G+DV+ A++G+GKT F TI +
Sbjct: 91 FSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEM 150
Query: 82 LQAIDSKSKE-LQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSK 140
L A+ K + +++SPTRELA Q V L Y + T GG + + K+ K
Sbjct: 151 LYALKFKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADKLVK 210
Query: 141 NCQVVSGTPGRVLDMIKRQVLNV-RNCKILVLDEADELLGETLGFKQQIYDIFTKLPP-T 198
++ TPGR+LD ++ V RN + LV+DEAD +L +GF+ ++ I LP
Sbjct: 211 GVNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRIL--EIGFEDEMRQIMKILPSEN 268
Query: 199 IQVVVVSATMS---KDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTL 255
Q ++ SAT + +D+ I+ K V + + +++ ++Q YV V+ ++ +F L
Sbjct: 269 RQTLLFSATQTTKVEDLARISLKPGPLYVNVDSGKPTSTVEGLEQGYVVVDSDK-RFLLL 327
Query: 256 CDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKA 315
+ ++F ++ V +++ L + V +HG KQ+ R +F + +
Sbjct: 328 FSFLKRNLKKKVIVFMSSCASVKYMAELLNYIDLPVLDLHGKQKQQRRTNTFFEFCNAEK 387
Query: 316 RVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGV--AINFITKEER 373
+L+ T+V ARG+D+ + ++ YD PD+ +YIHR+GR+ R G KG ++ F+ E
Sbjct: 388 GILLCTNVAARGLDIPAVDWIVQYDPPDDPRDYIHRVGRTAR-GTKGTGKSLMFLAPSEL 446
Query: 374 PKLKEIES 381
L+ +++
Sbjct: 447 GFLRYLKT 454
>CE27641 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 752
Score = 140 bits (353), Expect = 3e-33
Identities = 106/364 (29%), Positives = 166/364 (45%), Gaps = 53/364 (14%)
Query: 60 GKDVIAQAQSGTGKTATFTIGLLQAIDSKSKELQALVLSPTRELASQSESVISNLGDYLN 119
G +A AQ+ G ++ +IDS + ++L PTREL Q+ I L+
Sbjct: 276 GTQYVAVAQAEDGNLKWWSAAEQLSIDSSTP--LCVILEPTRELVQQTFQNIQTFASVLD 333
Query: 120 VTAHACT---GGKALQQDIKKVSKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADE 176
C G+ + Q ++ + C +V GTP RV D+I L +N + +V+DE D+
Sbjct: 334 SPKIRCVTLAAGENMNQILRTLETGCDIVVGTPSRVFDLIHTGKLATKNLQFVVIDEIDQ 393
Query: 177 LLGETLGFKQQIYDIFTKLPPTIQ------VVVVSATMSK-DILEITKKFMSDPVKILVK 229
L QI IF LP Q V+ SAT+ ++ + MS P I +K
Sbjct: 394 FLAGKNNCAHQIESIFRVLPLVAQDGTRRQVIACSATLHNFEVCRFADRHMSFPQWIDLK 453
Query: 230 -RDEISLDV---------------IKQYYVDVEKEEWKF-------------DTLC---- 256
D +S DV I+Q + V E+ DT+
Sbjct: 454 GADCVSADVHHVVCHVDASEDKQWIRQMHQQVHLEDDHVHDGDQIRPGTTDKDTISLGTK 513
Query: 257 ---DLY-----DSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMN 308
+Y +L + + ++FC T+++ D + L Q N S + +HGD EER +
Sbjct: 514 ILKGIYVVRAIHALQMDKAIVFCRTKQQCDHMEHFLQQNNLSAACLHGDRSAEERQSSLE 573
Query: 309 DFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFI 368
F+ G R L+ +DV ARG+DVQ + VI+ +PD Y+HRIGR GR R G++I+ +
Sbjct: 574 GFKKGIIRFLVCSDVVARGLDVQGVPFVISVTLPDEKSMYVHRIGRVGRAERMGLSISLV 633
Query: 369 TKEE 372
++ E
Sbjct: 634 SEYE 637
>SPAC22F3.08c [A] KOG0344 ATP-dependent RNA helicase
Length = 481
Score = 139 bits (351), Expect = 6e-33
Identities = 100/324 (30%), Positives = 168/324 (50%), Gaps = 9/324 (2%)
Query: 61 KDVIAQAQSGTGKTATFTIGLLQAIDSKSKE-LQALVLSPTRELASQSESVISNL--GDY 117
+D++A A +G+GKT + +LQ + +A++++PTREL Q L G
Sbjct: 84 RDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQIYRQAEKLSFGTS 143
Query: 118 LNVTAHACTGGKALQQDIKKVSKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADEL 177
L + + + K +Q+ K+ + + GTP R++ I+ L+ + V+DEAD L
Sbjct: 144 LKIIELSKSNEK-IQEKAPKLREKYDMCIGTPMRLVQAIQTG-LSFEKVEFFVMDEADRL 201
Query: 178 LGETLGFKQQIYDIFTKLPPT-IQVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLD 236
GF +Q I + + I + SAT+ + E+ K DP++I+V + + D
Sbjct: 202 FEP--GFIEQTDHILSACTSSNICKSLFSATIPSRVEELAKVVTVDPIRIIVGLKDAATD 259
Query: 237 VIKQYYVDVEKEEWKFDTLCDLYDSLTIT-QCVIFCNTRKKVDWLSRKLTQTNFSVSSMH 295
I Q + V + K L + + + + VIF ++ L +L V +H
Sbjct: 260 SIDQRLLFVGSDTSKIVILRQMISNGELKPRVVIFVQDIERAKALYTELLFDEIHVGVIH 319
Query: 296 GDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRS 355
G++ Q +R++ + FR G+ VLI+TD+ ARGID + +VIN+D P ++ +YIHRIGR+
Sbjct: 320 GELPQAKREEALAKFRKGEIWVLIATDLLARGIDFHGVKMVINFDFPQSVHSYIHRIGRT 379
Query: 356 GRFGRKGVAINFITKEERPKLKEI 379
GR G G A+ F TKE+ +K I
Sbjct: 380 GRAGNTGQAVTFFTKEDGEYIKLI 403
>At4g16630 [A] KOG0338 ATP-dependent RNA helicase
Length = 683
Score = 139 bits (349), Expect = 1e-32
Identities = 104/390 (26%), Positives = 180/390 (45%), Gaps = 56/390 (14%)
Query: 24 TFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGK---------- 73
TF +NL LLR G++ P +D+ A A +G+GK
Sbjct: 168 TFMELNLSRPLLRACETLGYKKPTPIQVQFIPQEW--RDLCASAITGSGKVSTRLMVLCN 225
Query: 74 ----------TATFTIGLLQAIDSKSKELQA---LVLSPTRELASQSESVISNLGDYLNV 120
TA F + L+ + + K + A L+L+PTRELA Q S+I NL + ++
Sbjct: 226 TEILFRYLTNTAAFALPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDI 285
Query: 121 TAHACTGGKALQQDIKKVSKNCQVVSGTPGRVLDMIKRQV-LNVRNCKILVLDEADELLG 179
GG ++++ + +V TPGR++D ++ + +++ + +L+LDEAD LL
Sbjct: 286 KCGLIVGGLSVREQEVVLRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL- 344
Query: 180 ETLGFKQQIYDIFTKLPPTIQVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIK 239
GF +I ++ P Q ++ SATM++++ E+ K ++ P+++ +
Sbjct: 345 -QTGFATEITELVRLCPKRRQTMLFSATMTEEVKELVKLSLNKPLRLSADPSARRPPGLT 403
Query: 240 QYYVDVEKEEWKFDTLCDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMK 299
+ Y+ + C T++ L + +HG++
Sbjct: 404 EEYLR----------------EFFVPSCA--SGTKQAAHRLKILFGLAGLKAAELHGNLT 445
Query: 300 QEERDQVMND----------FRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYI 349
Q +R V N FR + LI+TDV ARG+D+ + VINY P +++Y+
Sbjct: 446 QAQRLDVRNLGTSALFSLELFRKQEVDFLIATDVAARGLDIIGVQTVINYACPREIDSYV 505
Query: 350 HRIGRSGRFGRKGVAINFITKEERPKLKEI 379
HR+GR+ R GR+G A+ F+T +R LK I
Sbjct: 506 HRVGRTARAGREGYAVTFVTDSDRSLLKVI 535
>At2g07750 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 845
Score = 138 bits (348), Expect = 1e-32
Identities = 106/361 (29%), Positives = 185/361 (50%), Gaps = 41/361 (11%)
Query: 60 GKDVIAQAQSGTGKTATFTIG----LLQAIDS-----KSKELQALVLSPTRELASQ-SES 109
GKD + +A++GTGK+ F + +L+A++S K + L+L PTRELASQ +
Sbjct: 412 GKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIFVLILCPTRELASQIAAE 471
Query: 110 VISNLGDYLNVTAHACTGGKALQQDIKKV-SKNCQVVSGTPGRVLDMIKRQ---VLNVRN 165
+ L ++ + GG + D +++ S+ CQ++ TPGR+LD I+ + +
Sbjct: 472 GKALLKNHDGIGVQTLIGGTRFRLDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMA 531
Query: 166 CKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVVVVSATMSKDILEITKKFMSDPVK 225
K+ ++DEAD LL LGFK+ + I LP Q ++ SAT+ K++ +++
Sbjct: 532 LKLFIVDEADLLLD--LGFKRDVEKIIDCLPRQRQSLLFSATIPKEVRRVSQ-------- 581
Query: 226 ILVKRDEISLDVIKQYYVD----------VEKEEWKFDTLCDLY----DSLTITQCVIFC 271
+++KRD +D I V+ V E F + L +++ + ++FC
Sbjct: 582 LVLKRDHSYIDTIGLGCVETHDKVKQSCIVAPHESHFHLVPHLLKEHINNMPDYKIIVFC 641
Query: 272 NTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQ 331
+T + L + +V +H Q R V ++F+ +L+++DV ARG++
Sbjct: 642 STGMVTSLMYTLLREMKLNVREIHARKPQLHRTCVSDEFKESNRLILVTSDVSARGMNYP 701
Query: 332 QISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIESHYRIKIKPTP 391
++LVI IP + E YIHR+GR+GR G+ G + I ER L E++ + ++P P
Sbjct: 702 DVTLVIQVGIPSDREQYIHRLGRTGREGKGGKGLLLIAPWERYFLDELKD---LPLEPIP 758
Query: 392 A 392
A
Sbjct: 759 A 759
>At1g63250 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 798
Score = 138 bits (347), Expect = 2e-32
Identities = 106/361 (29%), Positives = 185/361 (50%), Gaps = 41/361 (11%)
Query: 60 GKDVIAQAQSGTGKTATFTIG----LLQAIDS-----KSKELQALVLSPTRELASQSESV 110
GKD + +A++GTGK+ F + +L+A++S K + AL+L PTRELASQ +
Sbjct: 365 GKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFALILCPTRELASQIAAE 424
Query: 111 ISNLGDYLN-VTAHACTGGKALQQDIKKV-SKNCQVVSGTPGRVLDMIKRQ---VLNVRN 165
L + + + GG + D +++ S+ CQ++ TPGR+LD I+ + +
Sbjct: 425 GKALLKFHDGIGVQTLIGGTRFKLDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMA 484
Query: 166 CKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVVVVSATMSKDILEITKKFMSDPVK 225
K+ ++DEAD LL LGF++ + I LP Q ++ SAT+ K++ +++
Sbjct: 485 LKLFIVDEADLLLD--LGFRRDVEKIIDCLPRQRQSLLFSATIPKEVRRVSQ-------- 534
Query: 226 ILVKRDEISLDVIKQYYVD----------VEKEEWKFDTLCDLY----DSLTITQCVIFC 271
+++KRD +D I V+ V E F + L ++ + ++FC
Sbjct: 535 LVLKRDHSYIDTIGLGCVETHDKVRQSCIVAPHESHFHLVPHLLKEHINNTPDYKIIVFC 594
Query: 272 NTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQ 331
+T + L + +V +H Q R +V ++F+ +L+++DV ARG++
Sbjct: 595 STGMVTSLMYTLLREMKLNVREIHARKPQLHRTRVSDEFKESNRLILVTSDVSARGMNYP 654
Query: 332 QISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIESHYRIKIKPTP 391
++LVI IP + E YIHR+GR+GR G+ G + I ER L E++ + ++P P
Sbjct: 655 DVTLVIQVGIPSDREQYIHRLGRTGREGKGGEGLLLIAPWERYFLDELKD---LPLEPIP 711
Query: 392 A 392
A
Sbjct: 712 A 712
>CE27728 [A] KOG0346 RNA helicase
Length = 634
Score = 137 bits (346), Expect = 2e-32
Identities = 108/405 (26%), Positives = 183/405 (44%), Gaps = 51/405 (12%)
Query: 24 TFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQ 83
TF L +L+ I G+E K+++ +A++G+GKT F I L+Q
Sbjct: 90 TFADFGLDERILKSIGELGWEKANQVQESVISLALENKNIMGRARTGSGKTGAFLIPLVQ 149
Query: 84 AIDSKSKELQ------ALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKK 137
+ ++SK A++++PT+EL +Q + L L +++
Sbjct: 150 KLIAESKTNDGSVGPSAVIIAPTKELITQIYKLFVKLSQALPFLQAINLCDINEEENSVW 209
Query: 138 VSKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPP 197
+ VV TPG++L M + LV+DEAD LL + G+++++ I +KLPP
Sbjct: 210 LEDRSHVVVTTPGKLLRMCSLRPEYCTLVSYLVMDEADLLL--SFGYEEEMIKIRSKLPP 267
Query: 198 TIQVVVVSATMSKDILEITKKFMSDPVKILVKRDEISL---DVIKQYYVDVEKEEWKFDT 254
T Q ++ SAT+ D+ + K FM+ PV I +K E L D + QY + +E +F
Sbjct: 268 TYQCLMTSATLKDDMTTLKKLFMTGPV-ITIKLTEGDLPNSDQLTQYQLTCGSDEERFAI 326
Query: 255 LCDLYD-SLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSG 313
L ++ L + + ++F NT + L L ++ M R V+N F G
Sbjct: 327 LVAMFKLKLIVGRSILFVNTIDRCYKLMLILRVFGLKSCILNSAMPANSRCHVINQFNEG 386
Query: 314 KARVLISTDV--------------------------------------WARGIDVQQISL 335
+++I++DV +RGID +S
Sbjct: 387 SYQIVIASDVSDADGSKLKEEIAGKSDEKPEKDEKKGKKASKLDKESGVSRGIDFHHVSN 446
Query: 336 VINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIE 380
V+N+D P+ + YIHR+GR+ R KG A++F ER L++I+
Sbjct: 447 VVNFDFPETTDAYIHRVGRTARGFNKGTALSFCIPSERAHLEQIQ 491
>Hs13787206 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 670
Score = 137 bits (344), Expect = 4e-32
Identities = 93/322 (28%), Positives = 166/322 (50%), Gaps = 12/322 (3%)
Query: 60 GKDVIAQAQSGTGKTATFTIGLLQAIDS----KSKELQALVLSPTRELASQSESVISNLG 115
G+D++A A++G+GKT F I ++ I L+LSPTRELA Q+ V+ L
Sbjct: 216 GRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMTRNGTGVLILSPTRELAMQTFGVLKELM 275
Query: 116 DYLNVTAHACTGGKALQQDIKKVSKNCQVVSGTPGRVLDMIKRQV-LNVRNCKILVLDEA 174
+ T GG + +K+ ++ TPGR+LD ++ +N + LV+DEA
Sbjct: 276 THHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEA 335
Query: 175 DELLGETLGFKQQIYDIFTKLPPTIQVVVVSATMSKDILEITK-KFMSDPVKILVKRDEI 233
D +L +GF++++ I LP Q ++ SAT ++ + ++ + +P+ + V D+
Sbjct: 336 DRILD--VGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKA 393
Query: 234 S--LDVIKQYYVDVEKEEWKFDTLCDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSV 291
+ +D ++Q YV E+ +F L + ++F ++ V + L + V
Sbjct: 394 NATVDGLEQGYVVCPSEK-RFLLLFTFLKKNRKKKLMVFFSSCMSVKYHYELLNYIDLPV 452
Query: 292 SSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHR 351
++HG KQ +R F + + L+ TDV ARG+D+ ++ ++ YD PD+ + YIHR
Sbjct: 453 LAIHGKQKQNKRTTTFFQFCNADSGTLLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHR 512
Query: 352 IGRSGR-FGRKGVAINFITKEE 372
+GR+ R +G A+ + EE
Sbjct: 513 VGRTARGLNGRGHALLILRPEE 534
>Hs4826686 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 740
Score = 136 bits (343), Expect = 5e-32
Identities = 101/338 (29%), Positives = 154/338 (44%), Gaps = 60/338 (17%)
Query: 93 QALVLSPTRELASQSESVISNLGDYLN---VTAHACTGGKALQQDIKKVSKNCQVVSGTP 149
+AL++ P+RELA Q+ + I Y++ + GG A + + + +V GTP
Sbjct: 288 KALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTP 347
Query: 150 GRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPT------IQVVV 203
GR+ D++ LN+ + LVLDEAD LL + G+ I + ++P +QV+V
Sbjct: 348 GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQ--GYSDFINRMHNQIPQVTSDGKRLQVIV 405
Query: 204 VSATM-SKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEK--------------- 247
SAT+ S D+ ++++K M P + +K ++ D + V V
Sbjct: 406 CSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIR 465
Query: 248 -----------------EEW-------KFDTLCDLYDSLTITQCVIFCNTRKKVDWLSRK 283
E W K + + Q +IFC T+ D L +
Sbjct: 466 TDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQY 525
Query: 284 LTQTN---------FSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQIS 334
Q FS +HGD K ER Q + F+ G R LI TDV ARGID+ +
Sbjct: 526 FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVP 585
Query: 335 LVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEE 372
VIN +PD +NY+HRIGR GR R G+AI+ + E+
Sbjct: 586 YVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEK 623
>7293369 [A] KOG0343 RNA Helicase
Length = 805
Score = 135 bits (341), Expect = 8e-32
Identities = 100/372 (26%), Positives = 181/372 (47%), Gaps = 30/372 (8%)
Query: 43 FEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQAID----SKSKELQALVLS 98
F +P GKDV+ A +G+GKT F I +L+ + S++ + A+++S
Sbjct: 92 FVHPTQVQRDSIGPALQGKDVLGAAITGSGKTLAFLIPVLEHLFMNKWSRTDGVGAIIIS 151
Query: 99 PTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQVVSGTPGRVLD-MIK 157
PTRELA Q + +G + + +A GGK L+ + ++ + C ++ TPGR+L M +
Sbjct: 152 PTRELAYQIFETLKKVGKHHDFSAGLIIGGKNLKFERTRMDQ-CNILICTPGRLLQHMDE 210
Query: 158 RQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVVVVSATMSKDILEITK 217
+ N ++LVLDEAD L +GF++ + I PP Q ++ SAT + + ++ +
Sbjct: 211 NPLFNTSTMEMLVLDEADRCLD--MGFQKTLNSIIENFPPVRQTLLFSATQTNTVQDLAR 268
Query: 218 KFMSDPVKI----LVKRDEISL--------------DVIKQYYVDVEKEEWKFDTLCDLY 259
+ DPV + R+E S ++++Q YV + E+ K L
Sbjct: 269 LNLKDPVYVGYGGATPREEPSASTKKTPNTAVLAVPELLQQSYVVLNLED-KITMLWSFI 327
Query: 260 DSLTITQCVIFCNTRKKVDWLSRKLTQTN--FSVSSMHGDMKQEERDQVMNDFRSGKARV 317
+ + ++F + K+ +L + + +++G + Q+ R + DF V
Sbjct: 328 KNHLKQKIIVFVASCKQAKYLYEIFCKLRPGSPLLALYGTLHQDRRIAIYEDFLRKSHVV 387
Query: 318 LISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFIT-KEERPKL 376
+ STDV +RG+D ++ V+ D P+++ YIHR GRS R +G + +T EE +
Sbjct: 388 MFSTDVASRGLDFPAVNWVVQLDCPEDVSQYIHRAGRSARNKTRGECLLVLTPSEEEYMI 447
Query: 377 KEIESHYRIKIK 388
++ I I+
Sbjct: 448 SALKEQLNIDIR 459
>CE06239 [A] KOG0344 ATP-dependent RNA helicase
Length = 581
Score = 133 bits (334), Expect = 5e-31
Identities = 101/390 (25%), Positives = 185/390 (46%), Gaps = 26/390 (6%)
Query: 25 FESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQA 84
F ++ P LL + P ++V+A A +G+GKT F + ++
Sbjct: 128 FSDSSMSPSLLNRLSENSIRQPSPIQMQSIPFMTERRNVLASAPTGSGKTLAFALPVIDE 187
Query: 85 I----------DSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQD 134
I S S +L A+VL PTRELA+Q+ + +++A +G + D
Sbjct: 188 ILELKQRADYSSSNSSKLLAVVLEPTRELAAQTYTEFLKYCANTSISAANFSGEET---D 244
Query: 135 IKKVSKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELL----GETLGFKQQIYD 190
I+ + ++ TP R++ + + ++ + + LV+DE+D L G+ F+ Q+
Sbjct: 245 IQ----HADILVSTPNRIVFHLDK--IDTSSLRWLVVDESDRLFEVVEGQDKCFRNQLAA 298
Query: 191 IFTKLPPTI-QVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEE 249
I+ +V SAT S ++ + K+ + + + V S +KQ E+
Sbjct: 299 IYKACDAKCTRVAFFSATFSHEVEKWCKENIDEIGMVCVGERNSSNTSVKQKLTYCGTED 358
Query: 250 WKFDTLCDLYDSLTITQCVIFCNTRKKVDWLSRKLT--QTNFSVSSMHGDMKQEERDQVM 307
K + +L + ++F ++ + L + L+ +N V S++ +ERD+ M
Sbjct: 359 GKKIAIRNLLRTSFKPPALVFVQSKDRAVQLVKLLSAIDSNLKVDSINSGKSDKERDETM 418
Query: 308 NDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINF 367
FR G+ VL+ T++ RG+D+ + LVINYD+P ++ +YIHR+GR+GR G+ G A+ +
Sbjct: 419 ERFRRGEIWVLVCTELLGRGLDLSDVGLVINYDLPTSIVSYIHRVGRTGRAGKSGHAVTY 478
Query: 368 ITKEERPKLKEIESHYRIKIKPTPANLEEL 397
T + +K I + R P L E+
Sbjct: 479 FTDADMKYIKSIATVIRQSGFDVPEYLMEM 508
>At2g40700 [A] KOG0348 ATP-dependent RNA helicase
Length = 609
Score = 133 bits (334), Expect = 5e-31
Identities = 109/421 (25%), Positives = 182/421 (42%), Gaps = 82/421 (19%)
Query: 42 GFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQAIDSKSKELQ------AL 95
GFE P G+DV+ A +GTGKT + L+ + S ++ AL
Sbjct: 49 GFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFAL 108
Query: 96 VLSPTRELASQSESVISNLGDYLN-VTAHACTGGKALQQDIKKVSKNCQVVSGTPGRVLD 154
V+ PTREL Q + L + + GG+ ++ ++ K ++ TPGR+LD
Sbjct: 109 VIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGGEKKAKEKARLRKGISILIATPGRLLD 168
Query: 155 MIKRQVLNV-RNCKILVLDEADELLGETLGFKQQIYDIFTKL--------------PPTI 199
+K V +N + ++ DEAD +L LG+ ++I I L P I
Sbjct: 169 HLKNTASFVHKNLRWVIFDEADSIL--ELGYGKEIEQIIKLLGSGQNEQGEEDDIVPKGI 226
Query: 200 QV--VVVSATMSKDILEITKKFMSDPVKILVKRDEI--SLDVIKQYYVDVEKEEWKF--- 252
Q +++SAT++ + ++ K + DPV I + ++ +L + D + E+
Sbjct: 227 QKQNLLLSATLNDKVNDLAKLSLDDPVMIGLDNTKLQQNLSIESPAAPDSDAEDMVIHVN 286
Query: 253 ---------------------------------DTLCDLYDSLTITQCVIFCNTRKKVDW 279
L +L++ + V+F +TR VD+
Sbjct: 287 KSANPLSEDYGIPSQLVQRYLRVPCGARLVALLSVLKNLFEREASQKVVVFFSTRDAVDF 346
Query: 280 LSRKLTQTNFSVSS------------------MHGDMKQEERDQVMNDFRSGKARVLIST 321
L++ + +S +HG M+QE+R F++ K VL+ST
Sbjct: 347 HYSLLSEFQWPPNSETEEEGTKELFLKCKTFRLHGSMEQEDRRSAFGTFKTEKQAVLLST 406
Query: 322 DVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIES 381
DV ARG+D ++ +I YD P Y+HR+GR+ R G KG A+ F+ E LKE++
Sbjct: 407 DVAARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARIGEKGEALLFLQPIEIDYLKELKK 466
Query: 382 H 382
H
Sbjct: 467 H 467
>SPBC4F6.07c [A] KOG0347 RNA helicase
Length = 648
Score = 132 bits (333), Expect = 7e-31
Identities = 113/387 (29%), Positives = 187/387 (48%), Gaps = 30/387 (7%)
Query: 29 NLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQAI--D 86
+L P++L + GF P G D+I +A +G+GKT F I +L+ +
Sbjct: 128 SLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCLRN 187
Query: 87 SKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQVVS 146
+K +QALV++PTRELA Q + N+ + TGG A+Q+ + ++K+ VV
Sbjct: 188 VDAKYVQALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVV 247
Query: 147 GTPGRVLDMIKRQVL--NVRNCKILVLDEADELLGETLGFKQ--QIYDIF-TKLPPTIQV 201
TPGR+ +I L N + K LVLDEAD LL ++ F++ ++ +I + Q
Sbjct: 248 ATPGRLWSVINENNLTGNFKKIKCLVLDEADRLLQKS-HFEELSKLLEILGNPMHTQRQT 306
Query: 202 VVVSATMSKDILEITKKFM--------SDPVKILVKRDEI-----SLDVIKQYYVDVEKE 248
+ SAT + + + KK M + P++ ++K LD Q V
Sbjct: 307 FIFSATFDEGLQQRLKKNMKGNITEKYNSPMENMLKEVRFFGKPKFLDANPQSAVASRVL 366
Query: 249 EWKFDTL---CDLYDSLTIT----QCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQE 301
E + DLY I + ++F N + + ++ L + +H + Q+
Sbjct: 367 EGLIECAPAEKDLYLYYLIMRYPGKTMVFANGIEDIKRITPFLNELKVPSYPLHAQLDQK 426
Query: 302 ERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRK 361
+R Q + F++ VL+ TDV ARGID+ ++ VI+Y +P + Y+HR GR+ R
Sbjct: 427 KRLQSLEKFKNNPKGVLVCTDVAARGIDIPSVTHVIHYHVPHTADMYVHRSGRTARANED 486
Query: 362 GVAINFITKEERPKLKEIESHYRIKIK 388
GV+I +E +LK + YR+K K
Sbjct: 487 GVSILMCGPKELSQLKRL--CYRLKKK 511
>Hs21040373 [A] KOG0329 ATP-dependent RNA helicase
Length = 316
Score = 132 bits (332), Expect = 9e-31
Identities = 77/203 (37%), Positives = 115/203 (55%), Gaps = 3/203 (1%)
Query: 22 SATFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGL 81
S+ F LKP+LLR I GFE+P G DV+ QA+SG GKTA F +
Sbjct: 43 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT 102
Query: 82 LQAIDSKSKELQALVLSPTRELASQSESVISNLGDYL-NVTAHACTGGKALQQDIKKVSK 140
LQ I+ + ++ LV+ TRELA Q Y+ +V GG ++++D + + K
Sbjct: 103 LQQIEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKK 162
Query: 141 NC-QVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTI 199
NC VV GTPGR+L +++ + +++N K VLDE D++L E L ++ + +IF P
Sbjct: 163 NCPHVVVGTPGRILALVRNRSFSLKNVKHFVLDECDKML-EQLDMRRDVQEIFRLTPHEK 221
Query: 200 QVVVVSATMSKDILEITKKFMSD 222
Q ++ SAT+SKDI + +KFM D
Sbjct: 222 QCMMFSATLSKDIRPVCRKFMQD 244
>SPBC24C6.02 [A] KOG0345 ATP-dependent RNA helicase
Length = 606
Score = 131 bits (330), Expect = 2e-30
Identities = 102/395 (25%), Positives = 189/395 (47%), Gaps = 25/395 (6%)
Query: 24 TFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQ 83
+F+S+N+ L + GF+ KD++ +A +G+GKT + +
Sbjct: 2 SFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFD 61
Query: 84 AI---DSKSKELQALVLSPTRELASQSESVISNLGDYL--------NVTAHACTGGKA-L 131
+ D+ L AL+++PTRELA+Q +V L Y + A GGK L
Sbjct: 62 KVTRRDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTL 121
Query: 132 QQDIKKV-SKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYD 190
D+ KN VV GTPGR+ +M+ ++ ++ +IL+LDEAD L+ +GF++ +
Sbjct: 122 TNDLASFREKNPSVVIGTPGRLNEMLSH--ISSKHLEILILDEADTLID--MGFQRTLQS 177
Query: 191 IFTKLPPTIQVVVVSATMSKDILEITK-KFMSDPVKILVKRDEISLDVIKQYYVDVEK-- 247
I ++LP + + SATM+ + K + + V++ V +D + ++
Sbjct: 178 IISQLPKQRRTGLFSATMNDTVSSFLKIAGLRNSVRVSVTVTSKKIDTRTPSSLAIQSLV 237
Query: 248 --EEWKFDTLCDLYDSLTITQCVIFCNTRKKVDWLSRKLT--QTNFSVSSMHGDMKQEER 303
+K + L ++ + ++F ++ V++ + + F + ++HG Q R
Sbjct: 238 IPPIYKVQCMIHLLCTIEYEKAIVFFSSCASVEYFNSLFLTYKLPFEIVALHGQQVQSNR 297
Query: 304 DQVMNDFR-SGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKG 362
+ F+ S K VL +TD+ +RG+D+ + V+ D P + +++ HR GR+GR GR G
Sbjct: 298 SRNFEKFKKSNKKTVLFTTDIASRGLDIPNVDFVLQLDPPLDPKSFSHRCGRAGRAGRAG 357
Query: 363 VAINFITKEERPKLKEIESHYRIKIKPTPANLEEL 397
VAI + + +E+ ++ I +E L
Sbjct: 358 VAIVLLNDGREEEYEELLRVRKVPITRIDTPIEAL 392
>Hs17505907 [A] KOG0348 ATP-dependent RNA helicase
Length = 851
Score = 130 bits (327), Expect = 3e-30
Identities = 106/400 (26%), Positives = 187/400 (46%), Gaps = 71/400 (17%)
Query: 60 GKDVIAQAQSGTGKTATFTIGLLQAIDSKSKELQ------ALVLSPTRELASQS-ESVIS 112
G+D + ++Q+G+GKT + I ++Q++ + ++Q ALVL PTRELA QS ++V
Sbjct: 268 GRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPYALVLVPTRELALQSFDTVQK 327
Query: 113 NLGDYLNVTAHACTGGKALQQDIKKVSKNCQVVSGTPGRVLDMIK-RQVLNVRNCKILVL 171
L + + GG+ + + ++ K ++ TPGR++D IK + ++ + LV
Sbjct: 328 LLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIKSTKNIHFSRLRWLVF 387
Query: 172 DEADELLGETLGFKQQIYDIFTKLPPTIQV---VVVSATMSKDILEITKKFMSDPVKILV 228
DEAD +L LGF++ I I + Q V++SAT+++ + + + DPV I V
Sbjct: 388 DEADRIL--DLGFEKDITVILNAVNAECQKRQNVLLSATLTEGVTRLADISLHDPVSISV 445
Query: 229 -------------------------KRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLT 263
K D ++ + +V V + + L +
Sbjct: 446 LDKSHDQLNPKDKAVQEVCPPPAGDKLDSFAIPESLKQHVTVVPSKLRLVCLA----AFI 501
Query: 264 ITQC--------VIFCNTRKKVDWLSRKLTQTNFSVSS------------------MHGD 297
+ +C V+F ++ + V++ QT S S +HG
Sbjct: 502 LQKCKFEEDQKMVVFFSSCELVEFHYSLFLQTLLSSSGAPASGQLPSASMRLKFLRLHGG 561
Query: 298 MKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGR 357
M+QEER V +F + VL+ TDV ARG+D+ Q++ ++ Y+ P + YIHRIGR+ R
Sbjct: 562 MEQEERTAVFQEFSHSRRGVLLCTDVAARGLDLPQVTWIVQYNAPSSPAEYIHRIGRTAR 621
Query: 358 FGRKGVAINFITKEERPKLKEIESHYRIKIKPTPANLEEL 397
G G ++ + E + + SH KI + +E++
Sbjct: 622 IGCHGSSLLILAPSEAEYVNSLASH---KINVSEIKMEDI 658
>Hs17474878 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 645
Score = 130 bits (326), Expect = 4e-30
Identities = 77/260 (29%), Positives = 138/260 (52%), Gaps = 22/260 (8%)
Query: 124 ACTGGKALQQDIKKVSKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLG 183
A GG + + ++ C++V TPG ++D+++ + L + C +VLDEAD ++ +G
Sbjct: 365 AVIGGISREDWGFRLLMGCEIVIATPGHLIDVLENRYLVLSCCTYVVLDEADRMID--VG 422
Query: 184 FKQQIYDIFTKLPPTIQVVVVSATMSKDILEITKKFMSDPVKILVKRDEISL---DVIKQ 240
F+ + I +P + E DP K+L + + ++Q
Sbjct: 423 FEPDVQKILEHMPQS---------------EARHDESEDPEKMLANFESGKRKPHERVEQ 467
Query: 241 YYVDVEKEEWKFDTLCDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQ 300
++ E E+ K L ++ IF N +K D L++ L + ++ ++HG Q
Sbjct: 468 VFLMSESEKRK--KLLEILKQGFDPAITIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQ 525
Query: 301 EERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGR 360
E+R+ +++ + G VL++TDV GID+Q +S+V+NYD+ N+++YIHRIGR G+ G+
Sbjct: 526 EQREFALSNLKPGAKDVLVTTDVAGHGIDIQDVSMVVNYDMAKNIDDYIHRIGRMGQAGK 585
Query: 361 KGVAINFITKEERPKLKEIE 380
GVAI F+TKE+ E++
Sbjct: 586 SGVAITFLTKEDSAVFYELK 605
>Hs22059599_1 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 372
Score = 129 bits (323), Expect = 1e-29
Identities = 61/111 (54%), Positives = 79/111 (70%)
Query: 232 EISLDVIKQYYVDVEKEEWKFDTLCDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSV 291
E++L+ IKQ +V VE+EEWKFD CDLY+ LT+ Q VIFCNT++KVDWL K+ +V
Sbjct: 259 ELTLEGIKQPFVAVEREEWKFDIPCDLYEMLTVIQVVIFCNTKRKVDWLMEKMRDAALTV 318
Query: 292 SSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIP 342
SSMH D Q+ V +F SG + LISTDVWA DV Q+S++INYD+P
Sbjct: 319 SSMHRDTPQKGPQSVSKEFPSGTSTGLISTDVWAGRSDVPQVSVIINYDLP 369
>YDR194c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 664
Score = 128 bits (322), Expect = 1e-29
Identities = 101/355 (28%), Positives = 178/355 (49%), Gaps = 31/355 (8%)
Query: 62 DVIAQAQSGTGKTATFTIGLLQAIDSKSKELQ----ALVLSPTRELASQSESVISNLGDY 117
DVIA+A++GTGKT F I + Q + + + Q A++++PTR+LA Q E+ + + D
Sbjct: 147 DVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDM 206
Query: 118 -LNVTAHACT---GGKALQQDIKKVSK-NCQVVSGTPGRVLDMIKRQVLNV-RNCKILVL 171
+ +AC GG + + K++K +V TPGR++D++++ R VL
Sbjct: 207 NYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVL 266
Query: 172 DEADELLGETLGFKQQIYDIF-------TKLPPTIQVVVVSATMSKDILEITKKFMSDPV 224
DEAD LL +GF+ + I +K I+ ++ SAT+ + ++ M+
Sbjct: 267 DEADRLL--EIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKE 324
Query: 225 KILV----KRDEISLDVIKQYYVDVEKEEWKFDTLCD-----LYDSLTITQCVIFCNTRK 275
+ + K + + + I Q V EK + + + + + +IF T K
Sbjct: 325 CLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVK 384
Query: 276 KVDWLSRKLT---QTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQ 332
+L L + + + HG + Q +R ++ F+ ++ +L+ TDV ARG+D
Sbjct: 385 FTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPN 444
Query: 333 ISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIESHYRIKI 387
+ V+ +P L NYIHRIGR+ R G++G ++ FI K+E P ++E+E I I
Sbjct: 445 VHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVI 499
>Hs8922976 [A] KOG0330 ATP-dependent RNA helicase
Length = 540
Score = 128 bits (322), Expect = 1e-29
Identities = 100/382 (26%), Positives = 173/382 (45%), Gaps = 40/382 (10%)
Query: 24 TFESMNLKPDLLRGIYFYGFEY--PXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGL 81
+F + L+P +L + E P G+ V+ A++G+GKT ++ + L
Sbjct: 127 SFADLGLEPRVLHALQEAAPEVVQPTTVQSSTIPSLLRGRHVVCAAETGSGKTLSYLLPL 186
Query: 82 LQ------AIDSKSKEL-QALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQD 134
LQ ++DS + LVL P+RELA Q +V LG L + GG +++
Sbjct: 187 LQRLLGQPSLDSLPIPAPRGLVLVPSRELAQQVRAVAQPLGRSLGLLVRDLEGGHGMRRI 246
Query: 135 IKKVSK--NCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETL---------- 182
++S+ + V+ TPG + +K +++++ LVLDEAD LL E+
Sbjct: 247 RLQLSRQPSADVLVATPGALWKALKSRLISLEQLSFLVLDEADTLLDESFLELVDYILEK 306
Query: 183 -GFKQQIYDIFTKLPPTIQVVVVSATMSKDILEITKKFMSDPVKILVKRDEIS--LDVIK 239
+ D+ P Q+V+V AT + + ++ K S + ++ + +K
Sbjct: 307 SHIAEGPADLEDPFNPKAQLVLVGATFPEGVGQLLNKVASPDAVTTITSSKLHCIMPHVK 366
Query: 240 QYYVDVEKEEWKFDTLCDLYDSLTITQ----------CVIFCNTRKKVDWLSRKLTQTNF 289
Q ++ ++ D + +L L ++FCN+ V+WL L
Sbjct: 367 QTFLRLKGA----DKVAELVHILKHRDRAERTGPSGTVLVFCNSSSTVNWLGYILDDHKI 422
Query: 290 SVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYI 349
+ G M R + F+ +L+ TD+ +RG+D + LV+NYD P L++YI
Sbjct: 423 QHLRLQGQMPALMRVGIFQSFQKSSRDILLCTDIASRGLDSTGVELVVNYDFPPTLQDYI 482
Query: 350 HRIGRSGRFGRK--GVAINFIT 369
HR GR GR G + G I+F+T
Sbjct: 483 HRAGRVGRVGSEVPGTVISFVT 504
>SPCC285.03 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 604
Score = 128 bits (321), Expect = 2e-29
Identities = 100/375 (26%), Positives = 177/375 (46%), Gaps = 64/375 (17%)
Query: 60 GKDVIAQAQSGTGKTATFTIGLLQAIDSKS-KELQALVLSPTRELASQSESVISNLGDYL 118
G DV A +G+GKT ++ I ++Q + ++ L+ +V+ PTREL Q
Sbjct: 173 GGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVAKTFEYYMSGA 232
Query: 119 NVTAHACTGGKALQQDIKKVS---KNCQ--VVSGTPGRVLDMIKR-QVLNVRNCKILVLD 172
+ A TG K+L+ + +++ C+ V+ TPGR++D I+ + ++++ + +V+D
Sbjct: 233 GLQVCAWTGQKSLRHETYQLNGDENECRIDVLVSTPGRLVDHIRNDESFSLQHLRYMVID 292
Query: 173 EADELLGET-----------------LGFKQQIYDIFTKLPPT----------------I 199
EAD LL ++ L K I D+ + PT +
Sbjct: 293 EADRLLDQSFQDWVDTVMMEISHPKCLQNKSNILDLDQNISPTFLPDIDTLLPYRLPSPL 352
Query: 200 QVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLD----------------VIKQYYV 243
Q +V SAT+++D +I + +P +LV+ ++ +D +++Y+V
Sbjct: 353 QKLVFSATLTRDPSKIASLKLHNPRLVLVQNKDMEVDDGGEIEDDAIVFSVPPTLQEYHV 412
Query: 244 DVEKEEWKFDTLCDLYDSLTITQCVIFCNTRKKVDWLSRKL------TQTNFSVSSMHGD 297
V E K L L S +T + F + + L R L +FS
Sbjct: 413 SVSSE--KPILLYHLIHSKNLTNILCFVKSNEAAARLHRLLELIHESLNQSFSCGLFTSS 470
Query: 298 MKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGR 357
+ ++ER ++++ F +G +L+ +D+ ARGIDV VINYD P ++ +Y+HRIGR+ R
Sbjct: 471 LSRDERKKIISRFATGDLNLLVCSDLMARGIDVANTQNVINYDPPLSVRSYVHRIGRTAR 530
Query: 358 FGRKGVAINFITKEE 372
GR+G A + E
Sbjct: 531 AGREGFAWTLVQSHE 545
>CE27336 [A] KOG0334 RNA helicase
Length = 436
Score = 128 bits (321), Expect = 2e-29
Identities = 83/272 (30%), Positives = 141/272 (51%), Gaps = 46/272 (16%)
Query: 94 ALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQVVSGTPGRVL 153
A++L+PTRELA Q+ + L + GG + + I + + ++V TPGR++
Sbjct: 119 AVILTPTRELAMQTYKEANKFAKPLGLKVACTYGGVGISEQIADLKRGAEIVVCTPGRMI 178
Query: 154 DMIKR---QVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVVVVSATMSK 210
D++ +V N+R LVLDEAD + + GF+ Q+ VV T +
Sbjct: 179 DVLAANSGKVTNLRRVTYLVLDEADRMFHK--GFEPQVGGK--------SVVCSDITQNA 228
Query: 211 DILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLTITQCVIF 270
I +KF+ L+++ YY + ++F
Sbjct: 229 VICAEHQKFLK------------LLELLGMYYDEGSS--------------------IVF 256
Query: 271 CNTRKKVDWLSRKLTQTNF-SVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGID 329
+ ++K D + +L +T + SV+S+HG + Q +RD + DF++G +VL++T V ARG+D
Sbjct: 257 VDKQEKADDIVDQLMRTGYNSVASLHGGIDQHDRDSSIADFKTGVIKVLVATSVAARGLD 316
Query: 330 VQQISLVINYDIPDNLENYIHRIGRSGRFGRK 361
V+ + LV+NYD P++ E+Y+HR+GR+GR GRK
Sbjct: 317 VKNLILVVNYDCPNHYEDYVHRVGRTGRAGRK 348
>At4g34910 [A] KOG0346 RNA helicase
Length = 626
Score = 127 bits (318), Expect = 4e-29
Identities = 108/412 (26%), Positives = 189/412 (45%), Gaps = 59/412 (14%)
Query: 24 TFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQ 83
+FE + L L+R + G E P GKDV+A+A++G+GKT + + LLQ
Sbjct: 47 SFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLLQ 106
Query: 84 AI---DSKSKEL---QALVLSPTRELASQSESVISNLGDYLNVTAHA--CTGGKALQQDI 135
+ DS SK+ A +L P+REL Q + +S+L + V A T +
Sbjct: 107 KLFSADSVSKKKLAPSAFILVPSRELCQQVYTEVSSLIELCRVQLKAVQLTSSMSASDMR 166
Query: 136 KKVSKNCQVVSGTPGRVLDMIKRQVLN----VRNCKILVLDEADELLGETLGFKQQIYDI 191
++ +++ TP + VL + ILVLDEAD LL + G++ + +
Sbjct: 167 NALAGLPEILVSTPACIPKCFAAGVLEPTAVSESLSILVLDEADLLL--SYGYEDNLRSV 224
Query: 192 FTKLPPTIQVVVVSATMSKDILEITKKFMSDPVKILVKRD----EISLDVIKQYYVDVEK 247
+ +P Q +++SAT S D+ ++ K + +P+ + + D E ++Q+++
Sbjct: 225 TSIIPRRCQCLLMSATTSSDVEKLKKLILHNPIVLTLTEDNDKEEAVPSNVQQFWISCSA 284
Query: 248 EEWKFDTLCDLYDSLTITQCVIFCNTRKKVDWLSR-KLTQTNFSVSS--MHGDMKQEERD 304
++ L L + + +IF NT +D R KL F + S ++G++ Q R
Sbjct: 285 QDKLLHILALLKLEVVQKKILIFINT---IDMGFRLKLFLEKFGIKSAILNGELPQNSRL 341
Query: 305 QVMNDFRSGKARVLISTD-----------------------------------VWARGID 329
++ F +G LI+TD RGID
Sbjct: 342 HILEQFNAGLFDYLIATDDNSQTKKQKEEAKGEANKENKKNNKRSKPKLDAEFGVVRGID 401
Query: 330 VQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIES 381
+++ VIN+D+P ++ YIHRIGR+GR G +++ I+ +E ++I+S
Sbjct: 402 FKKVHTVINFDMPQSVTGYIHRIGRTGRAYSSGSSVSLISPDEMEGFEDIKS 453
>7295505 [A] KOG0346 RNA helicase
Length = 560
Score = 127 bits (318), Expect = 4e-29
Identities = 96/384 (25%), Positives = 183/384 (47%), Gaps = 39/384 (10%)
Query: 25 FESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQA 84
F + L +L+ + G++ P GKDV+ +A++G+GKTAT+ + L+Q
Sbjct: 11 FHELELDQRILKAVAQLGWQQPTLIQSTAIPLLLEGKDVVVRARTGSGKTATYALPLIQK 70
Query: 85 I-----DSKSKELQALVLSPTRELASQSESVISNL----GDYLNVTAHACTGGKALQQDI 135
I ++ + + A+VL+PT++L QS VI L G + V A + + Q
Sbjct: 71 ILNSKLNASEQYVSAVVLAPTKKLCRQSRKVIEQLVESCGKVVRVADIADSSNDTVTQR- 129
Query: 136 KKVSKNCQVVSGTPGRVLDMIKR-QVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTK 194
+S++ +V TP +L + V+++++ + LV+DEAD L G+++ +
Sbjct: 130 HALSESPDIVVATPANLLAYAEAGSVVDLKHVETLVVDEAD--LVFAYGYEKDFKRLIKH 187
Query: 195 LPPTIQVVVVSATMSKDILEITKKFMSDPVKILVKRDE-ISLDVIKQYYVDVEKEEWKFD 253
LPP Q V+VSAT++ D++ + +++PV + ++ E + D + + E+ +
Sbjct: 188 LPPIYQAVLVSATLTDDVVRMKGLCLNNPVTLKLEEPELVPQDQLSHQRILAEENDKPAI 247
Query: 254 TLCDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSG 313
L L + +IF N+ + + L Q ++ ++ R ++ F G
Sbjct: 248 LYALLKLRLIRGKSIIFVNSIDRCYKVRLFLEQFGIRACVLNSELPANIRIHTISQFNKG 307
Query: 314 KARVLISTDVW-------------------------ARGIDVQQISLVINYDIPDNLENY 348
++I++D +RGID Q ++ VIN+D P ++ +Y
Sbjct: 308 TYDIIIASDEHHMEKPGGKSATNRKSPRSGDMESSASRGIDFQCVNNVINFDFPRDVTSY 367
Query: 349 IHRIGRSGRFGRKGVAINFITKEE 372
IHR GR+ R KG ++F++ +E
Sbjct: 368 IHRAGRTARGNNKGSVLSFVSMKE 391
>CE26264 [A] KOG0335 ATP-dependent RNA helicase
Length = 328
Score = 126 bits (317), Expect = 5e-29
Identities = 79/226 (34%), Positives = 134/226 (58%), Gaps = 9/226 (3%)
Query: 160 VLNVRNCKILVLDEADELLGETLGFKQQIYDIF--TKLPPTIQVVVV--SATMSKDILEI 215
++ + C+ LVLDEAD +L +GF+ QI I ++P + + SAT K+I +
Sbjct: 5 LIGMEGCRYLVLDEADRMLD--MGFEPQIRQIVECNRMPSKEERITAMFSATFPKEIQLL 62
Query: 216 TKKFMSDP-VKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLTITQC-VIFCNT 273
+ F+ + V + V R + + I Q V VE++E K L DL D+ + ++F T
Sbjct: 63 AQDFLKENYVFLAVGRVGSTSENIMQKIVWVEEDE-KRSYLMDLLDATGDSSLTLVFVET 121
Query: 274 RKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQI 333
++ L+ L + N+ V ++HGD+KQ ER++ ++ FR+G A +L++T V ARG+D+ +
Sbjct: 122 KRGASDLAYYLNRQNYEVVTIHGDLKQFEREKHLDLFRTGTAPILVATAVAARGLDIPNV 181
Query: 334 SLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEI 379
VINYD+P +++ Y+HRIGR+GR G G+A +F + R +E+
Sbjct: 182 KHVINYDLPSDVDEYVHRIGRTGRVGNVGLATSFFNDKNRNIAREL 227
>7296530 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 727
Score = 126 bits (317), Expect = 5e-29
Identities = 90/327 (27%), Positives = 160/327 (48%), Gaps = 53/327 (16%)
Query: 93 QALVLSPTRELASQSESVISNLGDYLN---VTAHACTGGKALQQDIKKVSKNCQVVSGTP 149
QA+++ P+RELA Q+ + I +L+ V + GG L++ ++ + +V GTP
Sbjct: 288 QAIIMEPSRELAEQTYNQIEKFKYHLSNPEVRSLLLIGGVRLEEQKAQLMQGTHIVVGTP 347
Query: 150 GRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPT------IQVVV 203
GR+ +MI ++ + +C+ VLDEAD LL + G+ + I + ++P +Q+VV
Sbjct: 348 GRLEEMINSGLVLLTHCRFFVLDEADALLKQ--GYTELIDRLHKQIPKITSDGRRLQMVV 405
Query: 204 VSATMSK-DILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKE---EW--------- 250
SAT+ ++ ++ ++ M P + +K ++ + + V+ + W
Sbjct: 406 CSATLHAFEVKKMAERLMHFPTWVDLKGEDAVPETVHHVVCLVDPQMDTTWQSLRQPIGT 465
Query: 251 --------------------------KFDTLCDLYDSLTITQCVIFCNTRKKVDWLSRKL 284
K + D + + +IFC T++ D L R L
Sbjct: 466 DGVHDRDNVHPGNHSKETLSQAVKLLKGEYCVHAIDKHNMDRAIIFCRTKQDCDNLERFL 525
Query: 285 TQT---NFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDI 341
Q ++S +HGD K +ER + + F+ + + LI TDV ARG+D+ + +IN +
Sbjct: 526 RQRGGKHYSCVCLHGDRKPQERKENLEMFKRQQVKFLICTDVAARGLDITGLPFMINVTL 585
Query: 342 PDNLENYIHRIGRSGRFGRKGVAINFI 368
PD+ NY+HRIGR GR R G+AI+ +
Sbjct: 586 PDDKTNYVHRIGRVGRAERMGLAISLV 612
>YLR276c [A] KOG0346 RNA helicase
Length = 594
Score = 125 bits (314), Expect = 1e-28
Identities = 108/430 (25%), Positives = 191/430 (44%), Gaps = 78/430 (18%)
Query: 22 SATFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGK-DVIAQAQSGTGKTATFTIG 80
S TFE+ +L LL+ I GF+YP K D+IA+A +G+GKT + I
Sbjct: 16 STTFEAFHLDSRLLQAIKNIGFQYPTLIQSHAIPLALQQKRDIIAKAATGSGKTLAYLIP 75
Query: 81 LLQAIDSKSKELQ--------ALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQ 132
+++ I K + ++L PTRELA Q +V+ L Y + +
Sbjct: 76 VIETILEYKKTIDNGEENGTLGIILVPTRELAQQVYNVLEKLVLYCSKDIRTLNISSDMS 135
Query: 133 QDIKK--VSKNCQVVSGTPGRVLDMIKRQV--LNVRNCKILVLDEADELLGETLGFKQQI 188
+ + +++ GTPG++LD+++ ++ +++ K LV+DE D +L T G++ +
Sbjct: 136 DSVLSTLLMDQPEIIVGTPGKLLDLLQTKINSISLNELKFLVVDEVDLVL--TFGYQDDL 193
Query: 189 YDIFTKLP--PTIQVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIK--QYYVD 244
I LP +Q ++SAT++ DI + +KF P + +EI+ + K QYYV
Sbjct: 194 NKIGEYLPLKKNLQTFLMSATLNDDIQALKQKFCRSPAILKFNDEEINKNQNKLLQYYVK 253
Query: 245 VEKEEWKFDTLCDLYDSLTITQ--CVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEE 302
V + + KF LC + L + + +IF N + L + Q ++ ++
Sbjct: 254 VSEFD-KF-LLCYVIFKLNLIKGKTLIFVNNIDRGYRLKLVMEQFGIKSCILNSELPVNS 311
Query: 303 RDQVMNDFR-----------------------------------------------SGKA 315
R +++ F S K
Sbjct: 312 RQHIVDQFNKNVYQLLIATDDTEYIKEEDDEIEEGHNTENQEEKSLEGEPENDKKPSKKK 371
Query: 316 RVLISTDVW---ARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEE 372
+V + D +RG+D + ++ V+N+D+P ++Y+HR+GR+ R G+ G AI+F+
Sbjct: 372 KVQVKKDKEYGVSRGVDFKNVACVLNFDLPTTAKSYVHRVGRTARGGKTGTAISFVV--- 428
Query: 373 RPKLKEIESH 382
LKE H
Sbjct: 429 --PLKEFGKH 436
>CE29052 [A] KOG0335 ATP-dependent RNA helicase
Length = 1156
Score = 125 bits (314), Expect = 1e-28
Identities = 96/341 (28%), Positives = 175/341 (51%), Gaps = 31/341 (9%)
Query: 60 GKDVIAQAQSGTGKTATFTIGLL----------QAIDSKSKELQALVLSPTRELASQSES 109
G DV+A A +G+GKT F I + + + + + L+++PTREL +Q+ +
Sbjct: 773 GNDVVACAHTGSGKTLAFLIPFVIKLMEEFEKDRDVTDEKPSPRLLIVAPTRELVNQTFT 832
Query: 110 VISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQ--VVSGTPGRVLDMIKRQVLNVRNCK 167
L + GG + +++ + Q ++ T GR+ D + +++ K
Sbjct: 833 TARQLTYETGLKCGLAFGGYSRNANVQHLRSFSQLNILVATMGRLQDFVNAGEVSLSKMK 892
Query: 168 ILVLDEADELLGETLGFKQQIYDIF-TKLPPTIQVVVVSATMSKDIL-EITKKFMSDPVK 225
+VLDEAD ++ ++ F +++ I + T Q V+ SA+ S+D+ + KF+ +
Sbjct: 893 YIVLDEADRMV-DSNDFGEEVSKIIGSPGERTQQTVLFSASFSEDLQSDDLPKFVKEGYT 951
Query: 226 IL-VKRDEISLDVIKQYYVDVEKEEWKFDTLCDLY--DSLTIT----------QCVIFCN 272
+L V + + + I Q + V + E K D + L D T+T + +IF N
Sbjct: 952 MLQVDKFGTANEKIDQKILPVPRTE-KRDAIYKLLGIDENTVTLLPDAPIEKQKTLIFVN 1010
Query: 273 TRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQ 332
+ K D L+ ++ S SMH QE+RD+ ++DFR GK + +++++V ARG+++
Sbjct: 1011 SVKFCDTLAALISSAGVSTISMHSYQNQEQRDRTLDDFRRGKYQCMVASNVCARGLNIAG 1070
Query: 333 ISLVINYDIPD--NLENYIHRIGRSGRFGRKGVAINFITKE 371
+ V+NYD+PD + Y++RIGR+GR G G + F+ E
Sbjct: 1071 LDHVVNYDMPDKNGFDEYVNRIGRTGRAGFTGTSTAFVDVE 1111
>ECU05g1270 [A] KOG0331 ATP-dependent RNA helicase
Length = 426
Score = 125 bits (313), Expect = 1e-28
Identities = 97/338 (28%), Positives = 174/338 (50%), Gaps = 45/338 (13%)
Query: 60 GKDVIAQAQSGTGKTATFTIGLLQAIDSKSKELQALVLSPTRELASQSESVISNLGDYLN 119
G DVI++ +G+GKT ++ + + ++S K L LV+ PTREL SQ V + L
Sbjct: 95 GVDVISE--TGSGKTLSYVLPHIHLLESGDKRL--LVIVPTRELVSQVGQVFRKFSEGL- 149
Query: 120 VTAHACTGGKALQQDIKKVSKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLG 179
+ TG +++ +VS+ V TPGR+ +++ ++ ++ + +V+DEAD L+
Sbjct: 150 LRIVEITGEVSIESQRLQVSRPFDVAISTPGRLRELL--ELKSIGGFEYVVVDEADRLMQ 207
Query: 180 ETLGFKQQIYDIFTKLPPTIQVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIK 239
+ + + I ++ P + T S +ILV + DV +
Sbjct: 208 HDI--RSDVTFILERMKPEVA----------SFFSATPFEWSGGTRILVGNVSVGRDV-E 254
Query: 240 QYYVDVEKEEWKFDTLCDLYDS---------------LTITQCVIFCNTRKKVDWLSRKL 284
++++ VEK+E K L ++ S L + + ++FCN+ + + L ++
Sbjct: 255 EFFMYVEKKE-KMQVLGEILVSCEGWLAKNMGVDRNGLEVKKIIVFCNSIRTCENLHKRF 313
Query: 285 TQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDN 344
Q + +H +ER V+ G+ VLI+TD+ RGID++ + LV+NYD+P
Sbjct: 314 RQ----LLVLHSRRTMQERKAVIEALE-GERAVLIATDLGGRGIDIKDVDLVVNYDLPRA 368
Query: 345 LENYIHRIGRSGRFGRKGVAINFITKEER---PKLKEI 379
++ Y+HR GR+GR RKG+A++ I +E+R PKLK +
Sbjct: 369 VDGYVHRCGRTGR-QRKGMALSMICREDREILPKLKRL 405
>At3g16840 [A] KOG0347 RNA helicase
Length = 833
Score = 122 bits (305), Expect = 1e-27
Identities = 109/427 (25%), Positives = 193/427 (44%), Gaps = 77/427 (18%)
Query: 23 ATFESMNLKPDLLRGIYFYGFEYPXXXXXX-XXXXXXXGKDVIAQAQSGTGKTATFTIGL 81
+ + SM L P L++ IY F+ P GKDVI A++G+GKT F + +
Sbjct: 191 SAWSSMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPI 250
Query: 82 LQAI-DSKSKE-------------------LQALVLSPTRELASQSESVISNLGDYLNVT 121
LQ + D + K L+AL+++PTRELA Q + N L+V
Sbjct: 251 LQRLLDEREKVGKLYALKGEEAQKYAADGYLRALIITPTRELALQVTEHLENAAKNLSVK 310
Query: 122 AHACTGGKALQQDIKKVSKNCQVVSGTPGRVLDMI---KRQVLNVRNCKILVLDEADELL 178
GG ++ +++ + ++V TPGR+ +++ ++ ++ + + VLDEAD ++
Sbjct: 311 VVPIVGGMFSEKQERRLKEKPEIVVATPGRLWELMSAGEKHLVELHSLSFFVLDEADRMV 370
Query: 179 GETLGFKQQIYDIFTKLPPT------------------------IQVVVVSAT--MSKDI 212
G +++ I LP T Q V SAT +S D
Sbjct: 371 ER--GHFRELQSILDLLPVTDKPNEGKTQTVKSNDTVLNVPKKKRQTFVFSATIALSSDF 428
Query: 213 LEITKKFMS----------DPVKILVK----RDEISLDVIKQYYVDVEKEEWKFDTLCD- 257
+ K+ S + +++L + RD +++ + + K E F C+
Sbjct: 429 RKKLKRGSSKSKQSSSGEVNSIEVLSERAGMRDNVAIIDLTTTSILAPKIEESF-IKCEE 487
Query: 258 ------LYDSLTI---TQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMN 308
LY L++ + ++FC + + +S L V ++ +MKQ R + ++
Sbjct: 488 KEKDAYLYYILSVHGQGRTIVFCTSVTDLRHISGLLKILGLDVCTLFSEMKQRARLKSID 547
Query: 309 DFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFI 368
FR+ + +LI+TD+ ARGID++ + +I+Y +P + E Y+HR GR+ R G +I I
Sbjct: 548 RFRASENGILIATDLVARGIDIKNVRTIIHYKLPHSAEVYVHRCGRTARAFADGCSIALI 607
Query: 369 TKEERPK 375
E K
Sbjct: 608 EPNETSK 614
>SPBC691.04 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 535
Score = 117 bits (294), Expect = 2e-26
Identities = 93/354 (26%), Positives = 172/354 (48%), Gaps = 24/354 (6%)
Query: 61 KDVIAQAQSGTGKTATFTIGLLQAIDS-----KSKELQALVLSPTRELASQSESVISNLG 115
++ + QA++GTGKT F + + + S ++ +++LSPTRELA Q L
Sbjct: 77 ENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLT 136
Query: 116 DYLNVTAHACTGGKALQQDIKKVSK-NCQVVSGTPGRVLDMIKR-QVLNVRNCKILVLDE 173
+ GG + ++ + + N ++ TPGR+ D ++ ++L + +LDE
Sbjct: 137 YGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRLEDHLQNPRILESLSTDSFILDE 196
Query: 174 ADELLGETLGFKQQIYDIFTKLPPT-IQVVVVSATMSKDILEITKKFMSDPVKI---LVK 229
AD L+ +GF + I +I + T + + SATM + + + + K+ L
Sbjct: 197 ADRLMD--MGFAESILNIHEAVTTTKTRKLCFSATMPPKVSNVFRGILGTDFKLINCLDP 254
Query: 230 RDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLTIT----QCVIFCNTRKKVDWLSRKL- 284
+ + + + Q+ ++ + ++ F + L LT + + ++F T VD++ L
Sbjct: 255 NEPPTHERVPQFVIETKLDK-VFSSSLSLLQQLTSSNPSSRIIVFLPTISMVDFVGGVLE 313
Query: 285 TQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDN 344
+H + +R + FR ++ +L +TDV ARG+D I+ V+ P N
Sbjct: 314 NHLKIPCFILHSGLTTAQRRSITESFRKCQSGILFATDVVARGMDFPNITQVVQITGPSN 373
Query: 345 LENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIESHYRIKIKPTPANLEELS 398
++YIHRIGR+GR G+ G A + ++E+P L I+ H +K A +E LS
Sbjct: 374 TDDYIHRIGRTGRAGKTGEAYLILLEQEKPFLNSIK-HLPLK----RATIEPLS 422
>At3g06980 [A] KOG0331 ATP-dependent RNA helicase
Length = 781
Score = 115 bits (287), Expect = 1e-25
Identities = 94/385 (24%), Positives = 172/385 (44%), Gaps = 42/385 (10%)
Query: 24 TFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQ 83
TF + D+++ + F+ P GK I QSG+GKT + + ++Q
Sbjct: 375 TFAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQ 434
Query: 84 AIDSKSKELQA-----------LVLSPTRELASQSESVISNLGDY----LNVTAHACTGG 128
+ + +ELQ +VL PT ELASQ V++N + + TGG
Sbjct: 435 RL--REEELQGHSKSSPGCPRVIVLVPTAELASQ---VLANCRSISKSGVPFRSMVVTGG 489
Query: 129 KALQQDIKKVSKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQI 188
+ ++ + + V+ TPGR ++ +L + N + +LDE D L G+ F+ +
Sbjct: 490 FRQRTQLENLEQGVDVLIATPGRFTYLMNEGILGLSNLRCAILDEVDILFGDD-EFEAAL 548
Query: 189 YDIFTKLPPTIQVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKE 248
++ P T Q + V+AT+ +I + D ++ R + ++++ VD +
Sbjct: 549 QNLINSSPVTAQYLFVTATLPLEIYNKLVEVFPDCEVVMGPRVHRVSNALEEFLVDCSGD 608
Query: 249 EW-----------KFDTLCDLYDSLTITQCVIFCN---TRKKVDWLSRKLT--QTNFSVS 292
+ K L + + +++ +IFCN T +KV+ + +++ + V
Sbjct: 609 DNAEKTPETAFQNKKTALLQIMEENPVSKTIIFCNKIETCRKVENIFKRVDRKERQLHVL 668
Query: 293 SMHGDMKQEERDQVMNDFRSGKAR----VLISTDVWARGIDVQQISLVINYDIPDNLENY 348
H + QE R M +F S + L+ TD +RGID + V+ +D P + Y
Sbjct: 669 PFHAALSQESRLTNMQEFTSSQPEENSLFLVCTDRASRGIDFSGVDHVVLFDFPRDPSEY 728
Query: 349 IHRIGRSGRFGR-KGVAINFITKEE 372
+ R+GR+ R R KG A F+ ++
Sbjct: 729 VRRVGRTARGARGKGKAFIFVVGKQ 753
>7290730 [A] KOG0331 ATP-dependent RNA helicase
Length = 438
Score = 112 bits (281), Expect = 7e-25
Identities = 91/378 (24%), Positives = 164/378 (43%), Gaps = 23/378 (6%)
Query: 24 TFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQ 83
+FE +L+ + G++ P GK+++ + GTGKT + + +
Sbjct: 33 SFERSGFNATILQQLEDQGYDGPTPIQAQTWSIAKEGKNIVMISGKGTGKTLGYLLPGIM 92
Query: 84 AIDSKSKELQ------ALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKK 137
+ ++ +Q L+L RE A + + + L + H G Q +
Sbjct: 93 KMHNQRGLMQHKKGPIVLILVDCREAAVMVQREVLYYTNPLELRTHCLLGNSQWQGHAE- 151
Query: 138 VSKNCQVVSGTPGRVLDMI--KRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKL 195
C ++ + GR+L MI K+ V+ + C LVLD D ++ +G + I + +L
Sbjct: 152 ----CDLLVASAGRLLQMIDNKKHVVELERCTYLVLDNIDRMID--VGLEGNICRLLCRL 205
Query: 196 PPTIQVVVVSATMSKDILEITKKFMSDPVKILVKRDE---ISLDVIKQYYVDVE---KEE 249
P Q++V S + S ++ + KF+ I V + L I+Q V K E
Sbjct: 206 RPHAQLIVSSTSWSSNLKRMANKFLGQYTAIRVGEINNIGVRLQNIRQRVEVVNGLSKVE 265
Query: 250 WKFDTLCDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMND 309
L +YD+ I V+ R+KV L + +HG +E +++D
Sbjct: 266 RLMKELTAIYDTSDIPGKVVIYVKRQKVVEELVDLIRNCVPCEGIHGGRTAQENQGIIHD 325
Query: 310 FRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSG--RFGRKGVAINF 367
F +G ++++T + + +DV I VINYD PDN++ Y+ R+ R+G + R I+F
Sbjct: 326 FGTGAYNIIVATQMTSNCLDVPGIRYVINYDFPDNIDKYVQRMSRTGCLSYNRNCEVISF 385
Query: 368 ITKEERPKLKEIESHYRI 385
T + E+ +I
Sbjct: 386 FTMANYKLVTEVVDFLKI 403
>YNR038w [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 629
Score = 112 bits (280), Expect = 1e-24
Identities = 80/345 (23%), Positives = 173/345 (49%), Gaps = 39/345 (11%)
Query: 62 DVIAQAQSGTGKTATFTIGLLQAIDSKS-KELQALVLSPTRELASQSESVISNLGDYLNV 120
D++ A +G+GKT ++I ++Q + + L+ +++ PT+ L +Q + ++ L ++
Sbjct: 229 DILVNAATGSGKTLAYSIPIVQTLFKRQINRLRCIIIVPTKLLINQVYTTLTKLTQGTSL 288
Query: 121 TAHACTGGKALQQDIKKVSK-NCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLG 179
+L+ + KK+S ++ TPGR++D + + +N++N K L++DEAD LL
Sbjct: 289 IVSIAKLENSLKDEHKKLSNLEPDILITTPGRLVDHLNMKSINLKNLKFLIIDEADRLLN 348
Query: 180 ETL-GFKQQIY-----DIFTKLPPTIQVVVVSATMSKDILEITKKFMSDPVKILVKRDEI 233
++ G+ ++ D LP + ++ SAT++ + ++ + P L + D++
Sbjct: 349 QSFQGWCPKLMSHLKTDKLDTLPGNVIKMIFSATLTTNTEKLNGLNLYKPKLFLKQTDKL 408
Query: 234 SL--DVIKQYYVDVEKEEWKFDTLCDLY-----------------------DSLTITQCV 268
+ + ++ +++ + + L LY S+ +++ +
Sbjct: 409 YQLPNKLNEFNINIPTAKSVYKPLILLYSICQFMAHSPIAAKILIFVKSNESSIRLSKLL 468
Query: 269 -IFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDF----RSGKARVLISTDV 323
+ C +R + L + L S++S++ + + E +++ +F S +LI+TD+
Sbjct: 469 QLICESRSQSSVL-KNLQNLAVSINSVNSNNSKAENKKIVANFSHHSESAGITILITTDI 527
Query: 324 WARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFI 368
+RGID+ I+ VINYD P + + Y+HR+GR+ R G A N +
Sbjct: 528 MSRGIDINDITQVINYDPPMSSQQYVHRVGRTARANELGSAYNLL 572
>SPBC21H7.04 [A] KOG0348 ATP-dependent RNA helicase
Length = 709
Score = 112 bits (280), Expect = 1e-24
Identities = 100/400 (25%), Positives = 181/400 (45%), Gaps = 74/400 (18%)
Query: 61 KDVIAQAQSGTGKTATFTIGLLQAIDSKSKELQ-------ALVLSPTRELASQSESVISN 113
KD +AQ+G+GKT + + ++Q + K L A++++PTREL Q +V +
Sbjct: 179 KDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANK 238
Query: 114 LGDYLNVTAH---ACT--GGKALQQDIKKVSKNCQVVSGTPGRVLDMIKR-QVLNVRNCK 167
L + N +H +C GG+ + + ++ K ++ GTPGR+ D ++ + L+V +
Sbjct: 239 LNN--NPLSHWIVSCNVIGGEKKKSEKARIRKGVNILIGTPGRLADHLENTEALDVSQVR 296
Query: 168 ILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVV-------------VVSATMSKDILE 214
+VLDE D L+ +GF++ + I + L ++ + SATM +
Sbjct: 297 WVVLDEGDRLMD--MGFEETLTKILSYLESQSSIIKKDLSIPSRKVTMLCSATMKDTVKR 354
Query: 215 ITKKFMSDPVKILVKRDEISLD-------VIKQYYVDVEKEEWKFDTLCDLYDS--LTIT 265
++ + D + + E + D + Q YV V + + +L L S +
Sbjct: 355 LSDSALKDALYLKSSIVEETNDGYSQAPEQLLQRYV-VVPPKLRLVSLVALLRSHVRSYK 413
Query: 266 QCVIFCNTRKKVDW-----------------LSRKLTQTNFSVSS--------------M 294
+ +IF + VD+ + K +S+ +
Sbjct: 414 KIIIFLSCSDSVDFHFEAFRCAINADEMEEAVKEKPDSEGDIISNAPALRIDGKSNVYRL 473
Query: 295 HGDMKQEERDQVMNDFRSGK---ARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHR 351
HG + Q+ R +N F S + + +L+ TDV ARG+D+ + LV+ YD P + ++Y+HR
Sbjct: 474 HGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNVDLVVQYDAPFSTDDYLHR 533
Query: 352 IGRSGRFGRKGVAINFITKEERPKLKEIESHYRIKIKPTP 391
IGR+ R G G AI F+ +E + ++S I P
Sbjct: 534 IGRTARAGHNGAAIMFLLPKESEYINLLKSSVSANILEQP 573
>YDL031w [A] KOG0337 ATP-dependent RNA helicase
Length = 995
Score = 112 bits (279), Expect = 1e-24
Identities = 98/424 (23%), Positives = 186/424 (43%), Gaps = 58/424 (13%)
Query: 24 TFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQ 83
+F S L +L I GF P +D++ A++G+GKTA F + +++
Sbjct: 138 SFPSFGLSKIVLNNIKRKGFRQPTPIQRKTIPLILQSRDIVGMARTGSGKTAAFILPMVE 197
Query: 84 AIDSKSKEL--QALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKN 141
+ S S ++ +A++LSP+RELA Q+ +V + + + TGG +L++ + N
Sbjct: 198 KLKSHSGKIGARAVILSPSRELAMQTFNVFKDFARGTELRSVLLTGGDSLEEQFGMMMTN 257
Query: 142 CQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQV 201
V+ TPGR L + L++++ + +V DEAD L +GF++Q+ ++ LP T Q
Sbjct: 258 PDVIIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLF--EMGFQEQLNELLASLPTTRQT 315
Query: 202 VVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDS 261
++ SAT+ +++ K + +PV + + + + ++ ++ + + + + L L +
Sbjct: 316 LLFSATLPNSLVDFVKAGLVNPVLVRLDAETKVSENLEMLFLSSKNADREANLLYILQEI 375
Query: 262 L-----TITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKAR 316
+ T Q N+ + D S + + ++++ N+ S KA
Sbjct: 376 IKIPLATSEQLQKLQNSNNEADSDSDDENDRQKKRRNFKKEKFRKQKMPAANELPSEKAT 435
Query: 317 VLI--------------------------STDVWARGIDVQQI-----SLVI-------N 338
+L + D AR + S+++
Sbjct: 436 ILFVPTRHHVEYISQLLRDCGYLISYIYGTLDQHARKRQLYNFRAGLTSILVVTDVAARG 495
Query: 339 YDIP--DNLENY---------IHRIGRSGRFGRKGVAINFITKEERPKLKEIESHYRIKI 387
DIP N+ NY +HR+GR+ R G KG A + + + E P L ++E KI
Sbjct: 496 VDIPMLANVINYTLPGSSKIFVHRVGRTARAGNKGWAYSIVAENELPYLLDLELFLGKKI 555
Query: 388 KPTP 391
TP
Sbjct: 556 LLTP 559
>At1g71280 [A] KOG0345 ATP-dependent RNA helicase
Length = 465
Score = 109 bits (273), Expect = 6e-24
Identities = 90/325 (27%), Positives = 153/325 (46%), Gaps = 38/325 (11%)
Query: 30 LKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQAI---- 85
L D++ + GFE KDV+ A +G+GKT F + ++ I
Sbjct: 24 LSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSN 83
Query: 86 --DSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQ 143
K ++ +++SPTREL++Q I + + + C +A +++ N
Sbjct: 84 SYPPKPHQVMGVIISPTRELSAQ----IHKVARAVRLDFAKCREVEADMNTLEEEGANLL 139
Query: 144 VVSGTPGRVLDMIKR-QVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVV 202
+ GTPGR+ DM+KR + L+ RN +IL+LDEAD LL +GF++Q+ I ++LP +
Sbjct: 140 I--GTPGRLSDMMKRMEFLDFRNLEILILDEADRLLD--MGFQKQVNYIISRLPKQRRTG 195
Query: 203 VVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSL 262
+ SAT ++ + ++ K + +P Y+ E ++ K L L
Sbjct: 196 LFSATQTQAVADLAKAGLRNP------------------YLKCEADQ-KSSQLVHLLIEN 236
Query: 263 TITQCVIFCNTRKKVDW----LSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVL 318
+ V+F T VD+ +S+ + + S HG M Q+ RD + F + VL
Sbjct: 237 KNKKLVVFFMTCACVDYWGLVISKIPSLKSISFFPTHGKMDQKGRDTALASFTEASSGVL 296
Query: 319 ISTDVWARGIDVQQISLVINYDIPD 343
+ TDV ARG+D+ I + + I D
Sbjct: 297 LCTDVAARGLDIPGIVYIRSLAIKD 321
>7296165 [A] KOG0330 ATP-dependent RNA helicase
Length = 536
Score = 109 bits (273), Expect = 6e-24
Identities = 91/339 (26%), Positives = 159/339 (46%), Gaps = 25/339 (7%)
Query: 67 AQSGTGKTATFTIGLLQAI-------DSKSKELQALVLSPTRELASQSESVISNLGDYLN 119
A++G GKT T+ + ++ + + K + L+L+P RELA+Q V L N
Sbjct: 153 AETGCGKTITYLLPIVDKLLQKEVVTERKLNTPRVLILTPGRELATQIAGVTEKLTQGTN 212
Query: 120 VTAHACTGGKALQQDIKKVSKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLG 179
+ + GG Q + + ++ T G + ++ + + + LVLDEAD LL
Sbjct: 213 LKVQSLLGGNTKQLMMNPQFEEVDILVATLGALSKLVTTGIYRMEQVRHLVLDEADTLLD 272
Query: 180 ETLGFKQQIY------DIFTKLPPTIQVVVVSATMSKDILEITKKFMS-DPVKILVKRDE 232
+T K + + K Q+++ SATM + EI K + D ++ +V
Sbjct: 273 DTFTDKLSYFLRRFPFHLVQKEDAGTQMILASATMPTNTREILHKVIDVDTIREVVSPHL 332
Query: 233 ISL-DVIKQYYVDVEKEEWKFDTLCDL--YDSLTITQCVIFCNTRKKVDWLSRKLTQTNF 289
L + Q ++ + K + + TL L +D ++F N D++S L +
Sbjct: 333 HRLMSHVTQKFLRLSKAD-RPATLLSLVKHDLAKRRPLIVFSNKSTTSDFVSIFLNNSGV 391
Query: 290 SVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYI 349
+ +++GDM + R F++G VL +TDV +RG+D + V+N+D P ++ +YI
Sbjct: 392 NCLNLNGDMLMKIRLGRFEQFQNGHCDVLSTTDVGSRGLDTTRARHVVNFDFPLHVSDYI 451
Query: 350 HRIGRSGRFGR--KGVAINFITKEERPKLKEIESHYRIK 386
HR GR GR G K + N I+ +EI+ RI+
Sbjct: 452 HRCGRIGRVGNMDKALVTNLISSR-----REIDVVQRIE 485
>SPCC1494.06c [A] KOG0346 RNA helicase
Length = 595
Score = 108 bits (269), Expect = 2e-23
Identities = 89/313 (28%), Positives = 145/313 (45%), Gaps = 23/313 (7%)
Query: 24 TFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQ 83
TF NL P L R I+ FE P GKD++AQA++G+GKTA + I +L+
Sbjct: 15 TFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILE 74
Query: 84 ------AIDSKSKELQALVLSPTRELASQSESVISNLG-------DYLNVTAHAC-TGGK 129
ID + + AL+L PTRELA Q +V+ L ++NV ++ T +
Sbjct: 75 LLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQR 134
Query: 130 ALQQDIKKVSKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIY 189
L D+ +V TP R + + VL + K LV+DEAD +L + G+ + +
Sbjct: 135 PLLLDLP------DIVIATPSRCVVHVASGVLPLDKLKFLVIDEADLML--SFGYNEDMK 186
Query: 190 DIFTKLPPTIQVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEE 249
+ LP Q ++SAT+SK+I + K +P + VK E S + QY V +++
Sbjct: 187 TLSRSLPRGTQSFLMSATLSKNIASLQKLVCRNPFILAVKDKEAS-GKLTQYVVKCSEQD 245
Query: 250 WKFDTLCDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMND 309
L L + +IF N + L L Q ++ ++ R ++
Sbjct: 246 KFLLAYILLKLRLIKGKILIFVNEINRCYRLKLFLEQFGLKSLVLNSELPVNSRLHILEQ 305
Query: 310 FRSGKARVLISTD 322
+ G +++I+TD
Sbjct: 306 YNKGLYQIIIATD 318
Score = 56.2 bits (134), Expect = 8e-08
Identities = 21/44 (47%), Positives = 35/44 (78%)
Query: 325 ARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFI 368
ARG+D + ++ V+N+D+P N ++YIHRIGR+ R G+ G A++F+
Sbjct: 387 ARGLDFENVACVLNFDMPSNTKSYIHRIGRTARAGKPGTAMSFV 430
>7294064 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 687
Score = 107 bits (266), Expect = 4e-23
Identities = 95/386 (24%), Positives = 174/386 (44%), Gaps = 69/386 (17%)
Query: 61 KDVIAQAQSGTGKTATFTIGLLQAIDSKSK-ELQALVLSPTRELASQSESVISNLGDYLN 119
+D+ A +G+GKT F I ++Q + + +++ALV+ P ELA Q VIS L
Sbjct: 184 RDICVSAPTGSGKTLAFAIPIVQLLSQRVDCKVRALVVLPVAELALQVYRVISELCSKTE 243
Query: 120 VTAHACTGGKALQQDIKKVSKN--------CQVVSGTPGRVLDMIKR-QVLNVRNCKILV 170
+ + L+ + +K+ + +V TPGR++D + + +++ K LV
Sbjct: 244 LEVCLLSKQHKLEDEQEKLVEQYKGKYYSKADIVVTTPGRLVDHLHATKGFCLKSLKFLV 303
Query: 171 LDEADELLGETLGFKQQIYDIFTKLPPTIQVVVV------------------------SA 206
+DEAD ++ F+ +Y + + + T ++ SA
Sbjct: 304 IDEADRIMDAV--FQNWLYHLDSHVKETTDQLLAGTQAPLCYAELQASFGKQPHKLLFSA 361
Query: 207 TMSKDILEITKKFMSDP------VKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYD 260
T+S+D ++ + P + + V +D + D + ++ T +L +
Sbjct: 362 TLSQDPEKLQDLRLFQPRLFATVLTMPVLKDATEEGADTEALTDPGQFVGRYTTPAELTE 421
Query: 261 SLTITQC-----VIFCNTRKKVDWLSRKLTQTNFS--------------------VSSMH 295
+T+ +F +K W R L TN S VS +
Sbjct: 422 QYCVTELRLKPLTVFALV-EKYKW-KRFLCFTNSSDQATRLTFVLKVLFQKYSTKVSELS 479
Query: 296 GDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRS 355
G++ + R++ + DF +GK LI +D ARGIDV + +V++Y+ P ++ YIHR+GR+
Sbjct: 480 GNLSAKVRNERLRDFAAGKINGLICSDALARGIDVADVDVVLSYETPRHITTYIHRVGRT 539
Query: 356 GRFGRKGVAINFITKEERPKLKEIES 381
R GRKG A+ +T+++ K+I S
Sbjct: 540 ARAGRKGTAVTVLTEQDMTLFKKILS 565
>Hs9966805 [A] KOG0347 RNA helicase
Length = 859
Score = 106 bits (265), Expect = 5e-23
Identities = 89/341 (26%), Positives = 160/341 (46%), Gaps = 43/341 (12%)
Query: 78 TIGLLQAIDSKS--------KELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGK 129
T L Q +D KS + L LVL+PTRELA Q + I + + + GG
Sbjct: 366 TGNLKQELDDKSATCKAYPKRPLLGLVLTPTRELAVQVKQHIDAVARFTGIKTAILVGGM 425
Query: 130 ALQQDIKKVSKNCQVVSGTPGRVLDMIKRQ---VLNVRNCKILVLDEADELL-----GET 181
+ Q+ + +++ ++V TPGR+ ++IK + + N+R + LV+DEAD ++ E
Sbjct: 426 STQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVDEADRMVEKGHFAEL 485
Query: 182 LGFKQQIYDIFTKLPPTIQVVVVSATMSK-----------------------DILEITKK 218
+ + D ++ P Q +V SAT++ D+L
Sbjct: 486 SQLLEMLND--SQYNPKRQTLVFSATLTLVHQAPARILHKKHTKKMDKTAKLDLLMQKIG 543
Query: 219 FMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLTITQCVIFCNTRKKVD 278
P I + R+E +++ + + + E +E F L + ++F N+ +
Sbjct: 544 MRGKPKVIDLTRNEATVETLTETKIHCETDEKDFYLYYFLMQYPG--RSLVFANSISCIK 601
Query: 279 WLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVIN 338
LS L + ++H M Q++R + + F + VL++TDV ARG+D+ ++ VI+
Sbjct: 602 RLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIH 661
Query: 339 YDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEI 379
Y +P E Y+HR GR+ R +G+++ I E+ K+I
Sbjct: 662 YQVPRTSEIYVHRSGRTARATNEGLSLMLIGPEDVINFKKI 702
>CE11190 [A] KOG0347 RNA helicase
Length = 746
Score = 106 bits (264), Expect = 7e-23
Identities = 104/399 (26%), Positives = 175/399 (43%), Gaps = 48/399 (12%)
Query: 21 VSATFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGK-DVIAQAQSGTGKTATFTI 79
+SA + L ++L I GF P + DV+ A++G+GKT F I
Sbjct: 153 ISAWKQFYFLPNEVLEAIEQMGFSEPTEIQSAVLPAAVRDRQDVLGAAETGSGKTLAFGI 212
Query: 80 GLLQAIDSKSKELQ-----------ALVLSPTRELASQSESVISNLGDYLNVTAHACTGG 128
L+ + S + Q AL+++PTREL Q I+ L + A + GG
Sbjct: 213 PLVARLLESSDDSQETESTEVRGPRALIVAPTRELVIQIMKHINALISTTQLIATSIVGG 272
Query: 129 KALQQDIKKVSKNC-QVVSGTPGRVLDMIKRQ-----VLNVRNCKILVLDEADELLGETL 182
A + + +S+ +V TPGR+ M++ + ++ K LV+DE D ++ E
Sbjct: 273 LAQVKQERIISQQRPDIVVATPGRLWAMMQEAETGEFLAEWKDLKCLVVDETDRMVEE-- 330
Query: 183 GFKQQIYDIFTKL-----PPTIQVVVVSATMS----KDILEITKKF---MSDPVKILVKR 230
G+ ++ I K+ +Q +V SAT++ +D+ E KK +S KI
Sbjct: 331 GYFAELTHILNKIHEESEKEKLQTLVFSATLTFAKAQDVAEEEKKKAKELSSQQKIQRLI 390
Query: 231 DEISLDVIKQYYVDVEKEEWKFDTLCD--------LYDSLTIT--------QCVIFCNTR 274
L K +D+ ++ L + L ++ + ++F N+
Sbjct: 391 KLTGLRENKHKVIDLTRQMGTAGCLVEARINCGNLLEKDTSLVYLLTRYPGRTIVFVNSI 450
Query: 275 KKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQIS 334
L L N +H M Q++R + + F K VL++TDV ARG+D+Q I
Sbjct: 451 DAARRLYSVLKSVNIDPMILHAKMIQKQRLKNLEKFSESKNAVLLATDVAARGLDIQGID 510
Query: 335 LVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEER 373
VI+Y +P +E YIHR GR+ R +G+ + + R
Sbjct: 511 HVIHYQVPKKVEIYIHRSGRTARASHRGLTVVLVDPPSR 549
>YKR024c [A] KOG0348 ATP-dependent RNA helicase
Length = 742
Score = 103 bits (257), Expect = 4e-22
Identities = 99/402 (24%), Positives = 176/402 (43%), Gaps = 85/402 (21%)
Query: 62 DVIAQAQSGTGKTATFTIGLLQAIDSKSKELQ------ALVLSPTRELASQSESVISNLG 115
D AQ+G+GKT ++ + ++ I + + ALV++PTRELASQ V S L
Sbjct: 186 DFFIHAQTGSGKTLSYLLPIISTILNMDTHVDRTSGAFALVIAPTRELASQIYHVCSTLV 245
Query: 116 DYLNVTAHACT-GGKALQQDIKKVSKNCQVVSGTPGRVLD------MIKRQVLNVRNCKI 168
+ GG+ + + ++ K C + GTPGRVLD +IK Q+ ++ +
Sbjct: 246 SCCHYLVPCLLIGGERKKSEKARLRKGCNFIIGTPGRVLDHLQNTKVIKEQL--SQSLRY 303
Query: 169 LVLDEADELLGETLGFKQQIYDI-------------FTKLPPTIQVVVVSATMSKDILEI 215
+VLDE D+L+ LGF + I +I F KLP + ++ SAT++ + +
Sbjct: 304 IVLDEGDKLM--ELGFDETISEIIKIVHDIPINSEKFPKLPHKLVHMLCSATLTDGVNRL 361
Query: 216 TKKFMSDPVKILVKRDEISLDVIK------QYYVDVEKEEWKFDTLCDLYDSLT------ 263
+ D K++ + D++ + + + + TL +++T
Sbjct: 362 RNVALKD-YKLISNGTKKDSDIVTVAPDQLLQRITIVPPKLRLVTLAATLNNITKDFIAS 420
Query: 264 -----ITQCVIFCNTRKKVDW------------------LSRKLTQTN-----FS----- 290
+ ++F + V++ R LT+ N FS
Sbjct: 421 GQQSKTLRTIVFVSCSDSVEFHYDAFSGSDGHHKNLTGDSVRLLTKGNTMFPCFSDSRDP 480
Query: 291 ---VSSMHGDMKQEERDQVM------NDFRSGKARVLISTDVWARGIDVQQISLVINYDI 341
+ +HG + Q+ R + N+ GK ++ TDV +RG+D+ + VI D
Sbjct: 481 DVVIYKLHGSLSQQMRTSTLQHFARDNEATKGKHLIMFCTDVASRGLDLPHVGSVIELDP 540
Query: 342 PDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIESHY 383
P +E+++HR+GR+ R G KG ++ F+ E K + Y
Sbjct: 541 PFAVEDHLHRVGRTARAGEKGESLLFLLPGEEEKYMDYIQPY 582
>YBR142w [A] KOG0347 RNA helicase
Length = 773
Score = 103 bits (256), Expect = 6e-22
Identities = 105/419 (25%), Positives = 180/419 (42%), Gaps = 74/419 (17%)
Query: 26 ESMNLKP---DLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLL 82
E NL P +L+ + F P G DV+ +A +G+GKT + I ++
Sbjct: 171 EWTNLAPLSMTILQSLQNLNFLRPTEIQKKSIPVIMQGVDVMGKASTGSGKTLAYGIPIV 230
Query: 83 QAIDS----KSKELQALVLSPTRELASQSESVISNLGDYLNVTAH----ACTGGKALQ-- 132
+ + S K+K+ +L+ +PTRELA Q + + + + + + TGG ++Q
Sbjct: 231 EKLISNFSQKNKKPISLIFTPTRELAHQVTDHLKKICEPVLAKSQYSILSLTGGLSIQKQ 290
Query: 133 QDIKKVSKNCQVVSGTPGRVLDMIKRQ---VLNVRNCKILVLDEADELL--GETLGFKQQ 187
Q + K + Q+V TPGR L+++++ + L+LDEAD LL G F++
Sbjct: 291 QRLLKYDNSGQIVIATPGRFLELLEKDNTLIKRFSKVNTLILDEADRLLQDGHFDEFEKI 350
Query: 188 IYDIFTKLPPTI----------QVVVVSATMSKDILEITKKFMSDPVKIL-VKRDEISLD 236
I + + Q ++ SAT S D+ + K S VK K +E L+
Sbjct: 351 IKHLLVERRKNRENSEGSSKIWQTLIFSATFSIDLFD--KLSSSRQVKDRRFKNNEDELN 408
Query: 237 VIKQYYVD---------------------------VEKEEWKFDTLCDLYDSLTITQCVI 269
+ Q+ + +E + D C + ++ +I
Sbjct: 409 AVIQHLMSKIHFNSKPVIIDTNPESKVSSQIKESLIECPPLERDLYCYYFLTMFPGTTLI 468
Query: 270 FCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKAR------------- 316
FCN V L+ L +H M Q+ R + + F+ A+
Sbjct: 469 FCNAIDSVKKLTVYLNNLGIPAFQIHSSMTQKNRLKSLERFKQQSAKQKTINHSNPDSVQ 528
Query: 317 ---VLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEE 372
VLI++DV ARG+D+ + VI+Y +P + + YIHR GR+ R G +GV+ + +E
Sbjct: 529 LSTVLIASDVAARGLDIPGVQHVIHYHLPRSTDIYIHRSGRTARAGSEGVSAMICSPQE 587
>Hs22057430 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 166
Score = 102 bits (255), Expect = 8e-22
Identities = 53/115 (46%), Positives = 70/115 (60%)
Query: 24 TFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQ 83
+F+ MNL LLRGIY YG E P G VIAQAQSG GK ATF I +LQ
Sbjct: 17 SFDDMNLSESLLRGIYAYGLEKPSAIQQRAILPCIKGYHVIAQAQSGAGKMATFAILILQ 76
Query: 84 AIDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKV 138
I+ K QAL+L+PT+ELA Q + V+ LGDY+ + HAC G ++ +++K+
Sbjct: 77 QIELDLKATQALLLAPTQELAQQIQKVVMALGDYMGASCHACIRGTNMRAEVQKL 131
>At5g19210 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 430
Score = 102 bits (255), Expect = 8e-22
Identities = 89/352 (25%), Positives = 159/352 (44%), Gaps = 41/352 (11%)
Query: 64 IAQAQSGTGKTATFTIGLLQAIDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAH 123
+ Q G+GKT T+ + + I+ + +QA+++ PTREL Q V L +
Sbjct: 75 LRQICQGSGKTLTYLLLIFSLINPQRSSVQAVIVVPTRELGMQVTKVARMLAAKSEIDVK 134
Query: 124 ACT------GGKALQQDIKKVSKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADEL 177
CT GG + ++ ++ T + M+++ + + + ++LV+DE D L
Sbjct: 135 GCTVMALLDGGTLRRHKSWLKAEPPAILVATVASLCHMLEKHIFRIDSVRVLVVDEVDFL 194
Query: 178 L--GETLGFKQQIYDIFTKLPPTIQVVVVSATMSKDILEITKKFMSDPVKIL-VKRDEIS 234
+ +G +++ F+ Q V SA++ + K F+ D ++ KRD +
Sbjct: 195 FYSSKQVGSVRKLLTSFSSCDKR-QTVFASASIPQH-----KHFVHDCIQQKWTKRDVVH 248
Query: 235 LDV---------IKQYYVDVEKEEWKFDTLCDLYDSLTITQCVIFCNTRKKVD------- 278
+ V + +V EK K L L +S +IF + +
Sbjct: 249 VHVSAIMPMPLCLLHRFVMCEKTN-KHQVLLALLESDAPESAIIFVGEQSEKSKKAGNDP 307
Query: 279 --WLSRKLTQTNFSVSS----MHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQ 332
L + +T++ S + GDM R + + R G +L+STD+ ARGID+ +
Sbjct: 308 STTLLMEFLKTSYKGSLEILLLEGDMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDLPE 367
Query: 333 ISLVINYDIPDNLENYIHRIGRSGR---FGRKGVAINFITKEERPKLKEIES 381
+ + N+D+P + +Y+HR GR+GR RK + N IT EER L+ E+
Sbjct: 368 TTHIFNFDLPQTVTDYLHRAGRAGRKPFSDRKCIVANLITSEERFVLQRYEN 419
>Hs20551983 [A] KOG0345 ATP-dependent RNA helicase
Length = 325
Score = 102 bits (253), Expect = 1e-21
Identities = 81/304 (26%), Positives = 151/304 (49%), Gaps = 26/304 (8%)
Query: 30 LKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQAIDSKS 89
L P +L + GF Y KDV A+A +G+GKT F I +L+ + +
Sbjct: 16 LHPQVLGALRELGFPYMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIPILEILLRRE 75
Query: 90 KELQ-----ALVLSPTRELASQSESVISNLGDYL-NVTAHACTGGKALQQDIKKV-SKNC 142
++L+ A++++PTRELA Q + V+S+ + + GG+ +D+++ +
Sbjct: 76 EKLKKSQVGAIIITPTRELAIQIDEVLSHFTKHFPEFSQILWIGGRNPGEDVERFKQQGG 135
Query: 143 QVVSGTPGRVLDMIKRQVLN------VRNCKILVLDEADELLGETLGFKQQIYDIFTKLP 196
++ TPGR+ DM +R+ VR+ +LVLDEAD LL +GF+ I I LP
Sbjct: 136 NIIVATPGRLEDMFRRKAEGLDLASCVRSLDVLVLDEADRLL--DMGFEASINTILEFLP 193
Query: 197 PTIQVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDV-------IKQYYVDVEKEE 249
+ + SAT ++++ + + + +PV++ VK ++ ++ YY+ V K +
Sbjct: 194 KQRRTGLFSATQTQEVENLVRAGLRNPVRVSVKEKGVAASSAQKTPSRLENYYM-VCKAD 252
Query: 250 WKFDTLCDLYDSLTITQCVIFCNTRKKVDWLSRKL--TQTNFSVSSMHGDMKQEERDQVM 307
KF+ L + + ++F +T V++ + L + +HG MK +R+++
Sbjct: 253 EKFNQLVHFLRNHKQEKHLVFFSTCACVEYYGKALEVLVKGVKIMCIHGKMKY-KRNKIF 311
Query: 308 NDFR 311
+FR
Sbjct: 312 MEFR 315
>At4g09730 [A] KOG0331 ATP-dependent RNA helicase
Length = 496
Score = 101 bits (251), Expect = 2e-21
Identities = 84/359 (23%), Positives = 160/359 (44%), Gaps = 29/359 (8%)
Query: 25 FESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQA 84
F+ + L +++ + E P K V+ + +G+GKT + + ++Q
Sbjct: 114 FQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIVQV 173
Query: 85 IDSKSKELQA-------------LVLSPTRELASQSESVISNLGDYLNVTAHAC--TGGK 129
+ +E +A +VL PTREL+ Q + DY + + +GG
Sbjct: 174 LSELMREDEANLGKKTKPRRPRTVVLCPTRELSEQ----VCLHQDYHHARFRSILVSGGS 229
Query: 130 ALQQDIKKVSKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIY 189
++ ++ +V GTPGR+L I+ + + LVLDEAD + GF +I
Sbjct: 230 RIRPQEDSLNNAIDMVVGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFDR--GFGPEIR 287
Query: 190 DIFTKLPPTIQVVVVSATMSKDILEITKKFMS-DPVKILVKRDEISLDVIKQYYVDVEKE 248
L I+VV + + ++F + ++ +I+ + ++ +
Sbjct: 288 KFLAPLNQHIKVVNEIVSFQAVQKLVDEEFQGIEHLRTSTLHKKIA--NARHDFIKLSGG 345
Query: 249 EWKFDTLCDLYDSLTI--TQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQV 306
E K + L + + ++ ++FCNT + L++ S + HG++ E+R +
Sbjct: 346 EDKLEALLQVLEPSLAKGSKVMVFCNTLNSSRAVDHYLSENQISTVNYHGEVPAEQRVEN 405
Query: 307 MNDFR--SGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGV 363
+ F+ G L+ TD+ ARG+D+ + V+ +D P N +Y+HR GR+ R G KG+
Sbjct: 406 LKKFKDEEGDCPTLVCTDLAARGLDL-DVDHVVMFDFPKNSIDYLHRTGRTARMGAKGL 463
>At4g15850 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 474
Score = 97.4 bits (241), Expect = 3e-20
Identities = 86/374 (22%), Positives = 163/374 (42%), Gaps = 62/374 (16%)
Query: 61 KDVIAQAQSGTGKTATFTIGLLQAIDSKSKE-LQALVLSPTRELASQSESVISNLGDYLN 119
+D+ + +G+GKT ++ + ++Q + S+ L+ALV+ PTR+LA Q + V + +
Sbjct: 25 RDICVNSPTGSGKTLSYALPIVQLLASRPVRCLRALVVLPTRDLALQVKDVFDAIAPAVG 84
Query: 120 VTAHACTGGKALQQDIKKVSKNCQVVSG---------------------TPGRVLDMIKR 158
++ + G ++ +I ++ K ++ +G TPGR++D I
Sbjct: 85 LSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPDDLSQNLESAVDILVATPGRLMDHINN 144
Query: 159 -QVLNVRNCKILVLDEADELLGE------------TLGFKQQIYDIFTKLPPT----IQV 201
+ + + + LV+DE D LL E T ++ FT P+ +Q
Sbjct: 145 TKGFTLEHLRYLVVDETDRLLREAYQSWLPTVLQLTQTSDDSLFPSFTPFVPSAFGSLQT 204
Query: 202 V--------------------VVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQY 241
V V+SAT+++D ++ + + P+ + L +
Sbjct: 205 VRRQSVERGFKGKPYPRLVKMVLSATLTQDPSKLIQLDLHHPLFMTTGGSRYRLPEKLEC 264
Query: 242 YVDVEKEEWKFDTLCDLYDSLTITQCVIFCNTRKKVDWLSRKLT---QTNFSVSSMHGDM 298
+ + K L L S +C+IF ++ + L + L G +
Sbjct: 265 LRLICETGMKPVYLVALLKSWEGEKCIIFTSSVETTRRLCKLLNFFGDPKIKAKEYSGGL 324
Query: 299 KQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRF 358
Q R + + FR G +VL+++D RG+DV+ ++ VINYD+P + +IHR GR+ R
Sbjct: 325 NQSLRSKELKAFRKGDIQVLVASDALTRGMDVKGVTNVINYDMPPFAKTFIHRAGRTARA 384
Query: 359 GRKGVAINFITKEE 372
G+ G ++ E
Sbjct: 385 GQAGRCFTLLSNHE 398
>CE00456 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 696
Score = 97.1 bits (240), Expect = 4e-20
Identities = 87/353 (24%), Positives = 170/353 (47%), Gaps = 41/353 (11%)
Query: 61 KDVIAQAQSGTGKTATFTIGLLQAIDSK-SKELQALVLSPTRELASQSESVISNLGDYLN 119
+DV A +G+GKT + + +L A+ SK SK LQA++L P + L +Q D
Sbjct: 260 RDVAIAAPTGSGKTICYVLPVLAAVGSKPSKILQAVILVPVQTLVAQIVDEFKRWNDESG 319
Query: 120 VT-AHACTGGKALQQDIKKVSKNC-QVVSGTPGRVLDMIKRQV---LNVRNCKILVLDEA 174
V + +G +++ ++++ + V+ TP R++ + ++ +++ + L++DEA
Sbjct: 320 VAKVVSLSGANDFEKEARQLASDPPNVIVATPARLVQHLTSKIPPPIDLSKLRFLIVDEA 379
Query: 175 D-----------ELLGETLGFKQQIYDI--FTKLPPTIQVVVVSATMSKDILEI------ 215
D +L+ G +++ + + Q +V+SAT+SKD+ E+
Sbjct: 380 DRMGKLMREEWLDLVEFLCGGMERVACLKDIIRQRRAPQKIVLSATLSKDVEELHLWNLF 439
Query: 216 -------TKKFMSDPVKILVKRDEIS--LDVIKQYYVDVEKEEWKFDTLCDLYDSLT--- 263
T + D + + D +S L + + + KF L +Y +T
Sbjct: 440 KPRLFSATAVSVKDITSGIPQVDHVSGRLALPSSISHRLVVTDPKFHPLA-VYQQITRNK 498
Query: 264 ITQCVIFCN---TRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLIS 320
+ +IF N + ++ + ++L + F V + + R +++ F + RVLI
Sbjct: 499 FNRTLIFVNEVSSSNRLAHVLKELCKDQFEVDYFTAQLFGKRRYKMLEKFNKNENRVLIC 558
Query: 321 TDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEER 373
+DV ARG D+ ++ VINY++P + + ++HR GR+GR G+ G I+ KE +
Sbjct: 559 SDVLARGTDLNKVDCVINYNLPADDKLFVHRAGRTGRAGQDGYVISVGDKESK 611
>7302399 [A] KOG0347 RNA helicase
Length = 813
Score = 96.3 bits (238), Expect = 7e-20
Identities = 80/313 (25%), Positives = 139/313 (43%), Gaps = 32/313 (10%)
Query: 92 LQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQVVSGTPGR 151
L LVL+PTRELA Q ++ + Y + A GG A+ + + + + +V TPGR
Sbjct: 341 LYGLVLTPTRELAVQVKNHLVAAAKYTGIRVAAIFGGLAVAKQERVLRQCPDIVVATPGR 400
Query: 152 VLDMI---KRQVLNVRNCKILVLDEADELLG----ETLGFKQQIYDIFTKLPPTIQVVVV 204
+ ++ R + + + LV+DE D ++ E L ++ + + Q V
Sbjct: 401 LWELYAQGNRHLGKIEDVSFLVIDETDRMVEKGHFEELRSLLKVLNSDEQKKHQRQNFVY 460
Query: 205 SAT----------MSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDT 254
SAT M K + KF+ V ++ L + + VD+ + T
Sbjct: 461 SATLTLVHDLPDHMQKRNVGKRPKFVKQTVDQKIESLIEELGISQPKIVDITSSQQTAQT 520
Query: 255 LCDLYDSLTIT---------------QCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMK 299
L + I + ++FCN+ V L+ + + +H +M
Sbjct: 521 LTESRLLCPIDHKDYHLYYFIQRHPGRTIVFCNSIDCVKRLATLFGLLDCNPLPLHANMI 580
Query: 300 QEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFG 359
Q++R + + FR +LI+TDV ARG+D+ + VI+Y +P ENY+HR GR+ R
Sbjct: 581 QKQRLKNLERFRDSPTGLLIATDVAARGLDIPNVEHVIHYQVPRTSENYVHRSGRTARAN 640
Query: 360 RKGVAINFITKEE 372
+ G+ + F+ E
Sbjct: 641 KHGITVMFMEPGE 653
>Hs20555745 [A] KOG0326 ATP-dependent RNA helicase
Length = 325
Score = 93.2 bits (230), Expect = 6e-19
Identities = 95/373 (25%), Positives = 150/373 (39%), Gaps = 114/373 (30%)
Query: 24 TFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQ 83
T ++N K LL I+ G++ P G+D++A+A++GTGK++ I LL+
Sbjct: 50 TIIALNHKRRLLMRIFEMGWKKPSPFQEESIPIALSGRDILARAKNGTGKSSAHDIPLLK 109
Query: 84 AIDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQ 143
+D K +Q +V+ PT GG ALQ VS+ C
Sbjct: 110 RLDLKKDTIQTIVIVPT--------------------------GGPALQ-----VSQICI 138
Query: 144 VVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVVV 203
VS G V ++ N D++L +L T+ +V+
Sbjct: 139 QVSKHMGGVKVVMTTGGTN----------SGDDVL---------------RLDDTVHMVI 173
Query: 204 VSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLT 263
+ IL + KK ++ I QYY V + + K L L+ L
Sbjct: 174 AAPGR---ILNLIKKGVAKD--------------ITQYYAYVTEHQ-KVHGLTTLFSRLQ 215
Query: 264 ITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDV 323
+ Q +IF N ++V+W + K++Q
Sbjct: 216 LNQMIIFFNCSQRVEWPA-KISQL------------------------------------ 238
Query: 324 WARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIESHY 383
GID+Q +++VIN+D E Y+ IGR G FG G+AIN IT + LK IE
Sbjct: 239 ---GIDIQAVNVVINFDFSKLEETYLRHIGRPGHFGHFGLAINLITYGDHFNLKGIEEQL 295
Query: 384 RIKIKPTPANLEE 396
+IKP P+N+++
Sbjct: 296 GKEIKPIPSNIDK 308
>Hs18595975 [A] KOG0335 ATP-dependent RNA helicase
Length = 468
Score = 92.4 bits (228), Expect = 1e-18
Identities = 75/263 (28%), Positives = 127/263 (47%), Gaps = 32/263 (12%)
Query: 123 HACT--GGKALQQDIKKVSKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGE 180
H C G + Q I+ + C ++ TPG ++D+++R + + CK LVLDEAD +L
Sbjct: 218 HPCVVYGDADIGQQIQVLEHGCHLLVATPGGLVDLMERGKIGLDFCKYLVLDEADRML-- 275
Query: 181 TLGFKQQIYDIFTK----LPPTIQVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLD 236
+GF QI+ I + L +++ SAT +I + + F+ + + + V R + +
Sbjct: 276 DMGFGPQIHLILEQDTMPLKGIHHIMMFSATFPNEIQMLARDFLDEYIFLAVGRVGSTSE 335
Query: 237 VIKQYYVDVEKEEWKFDTLCDLY-----DSLTITQCVIFCNTRKKVDWLSRKLTQTNFSV 291
I Q V VE+ + K L DL DSLT+ +F T+K D L L +
Sbjct: 336 TITQEVVWVEEPD-KRSFLLDLLNAPGKDSLTL----VFVETKKGEDSLENFLYHEVYPC 390
Query: 292 SSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQI-------SLVINYDIPDN 344
+S+HGD Q +R+ G + VL+ + + G + N+D+P +
Sbjct: 391 TSIHGDQSQRDRE-------GGPSSVLLGENPNSSGYSCGSMKTRHFKCETCFNFDLPSD 443
Query: 345 LENYIHRIGRSGRFGRKGVAINF 367
+E Y+ IG +G G +G+A +F
Sbjct: 444 IEEYVPCIGCTGCVGIQGLATSF 466
>ECU06g1250 [A] KOG0337 ATP-dependent RNA helicase
Length = 465
Score = 90.5 bits (223), Expect = 4e-18
Identities = 89/348 (25%), Positives = 153/348 (43%), Gaps = 58/348 (16%)
Query: 24 TFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLLQ 83
+F++M L LLR I + G P + ++ ++G+GKT + I +Q
Sbjct: 11 SFKTMGLDYRLLRNILYEG---PTPIQRKTIPLILERRSLMGVGRTGSGKTLCYLIPAIQ 67
Query: 84 AIDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQ 143
S K LV+ PT+EL Q+ V+ K L + I++ K +
Sbjct: 68 RAISGEK---TLVIVPTKELVIQARRVL-----------------KRLARGIEEAWKLIE 107
Query: 144 VVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTI--QV 201
+ TPG++ M + +LV+DE D +L E + +F ++ ++ Q
Sbjct: 108 IC--TPGKIEGM---------SADMLVVDEIDRILEEP-----SLKSVFDRINESLSCQK 151
Query: 202 VVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDS 261
V SAT+ L + K++ I+ + +K ++ + E K L + D
Sbjct: 152 VFFSATLPDHPLNM---------KVVEIETRIN-ETVKHFFFYIPSES-KEAALLRILDK 200
Query: 262 LTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLIST 321
T ++F T+ V+ L L + NF ++ M E R DF + K +L+ T
Sbjct: 201 TRKT--IVFAATKYAVELLLEILNKNNFESRGIYSSMDDEARRANFRDFNTSKFSILVVT 258
Query: 322 DVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFIT 369
DV ARG+D+ + V+NYD+ D ++HR+ GR GV +F+T
Sbjct: 259 DVAARGLDIPYLDTVVNYDLCDE-RTFLHRV---GRVRGMGVQYSFVT 302
>Hs17459025 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 202
Score = 89.4 bits (220), Expect = 9e-18
Identities = 70/251 (27%), Positives = 107/251 (41%), Gaps = 105/251 (41%)
Query: 127 GGKALQQDIKKVSKNC-QVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFK 185
GG + +++K+ ++ GTPG V DM+ + L+ + KI VLD+ADE+L + GF+
Sbjct: 56 GGTHVCAEVQKLQMEAPHIIGGTPGPVCDMLNWRYLSPKYIKIFVLDKADEML--SCGFR 113
Query: 186 QQIYDIFTKLPPTIQVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDV 245
QIY D+ ++ ++
Sbjct: 114 DQIY----------------------------------------------DIFQKLNNNI 127
Query: 246 EKEEWKFDTLCDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQ 305
EWK DTL DL+++LT+TQ
Sbjct: 128 LFAEWKQDTLYDLHETLTVTQ--------------------------------------- 148
Query: 306 VMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAI 365
A V I+T +++SL+I+YD+P N ENYIHRIGR G+FGRKGVAI
Sbjct: 149 ---------AGVFINTR--------RKVSLLIDYDLPTNRENYIHRIGRGGQFGRKGVAI 191
Query: 366 NFITKEERPKL 376
+ +T+E++ L
Sbjct: 192 SMVTEEDKRTL 202
>ECU07g1060 [A] KOG0344 ATP-dependent RNA helicase
Length = 416
Score = 88.6 bits (218), Expect = 1e-17
Identities = 96/351 (27%), Positives = 155/351 (43%), Gaps = 52/351 (14%)
Query: 62 DVIAQAQSGTGKTATFTIGLLQAIDSKS---------KELQALVLSPTRELASQSESVIS 112
+VI QA +G+GKT ++ + L++ +S K L V RE+ + V+
Sbjct: 64 NVIVQAFTGSGKTLSYCLPLVEMARGRSLFGAILVPGKPLVRQVYRVVREIKHEGLKVVG 123
Query: 113 NLGDYL-NVTAHACTGGKALQQDI---------KKVSKNCQVVSGTPGRVLDMIKRQVLN 162
GD + G+ +Q+ I + + + +V+ GTP VL ++
Sbjct: 124 VYGDGREDFLVEEGEKGELVQKAIDDKMRERIAESLRASARVLIGTPRSVLGLMSMS--E 181
Query: 163 VRNCKILVLDEADELLG-ETLGFKQQIYDIFTKLPPTIQVVVVSATMSKDILEITKKFMS 221
+RN LV+DEAD L+ ET+G I + I + SATM++ + E+
Sbjct: 182 IRNVTHLVIDEADLLINPETVGVFASILSVIEM--EDIHISCFSATMNEYVSEVI----- 234
Query: 222 DPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLTITQCVIFCNTRKKVDWLS 281
+ VK + K +S +I +V + K +L + + +IF K + LS
Sbjct: 235 ETVKSITKIRVVSKRLIDHEFVFGTSRKIKHLSLLQIIADGIESPTLIFVKDEKTGEALS 294
Query: 282 RKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDI 341
L + S+++ + QE +V++ FR K L +TD +RGID I VINYD+
Sbjct: 295 MLLGK-----SAVYRE-DQEGSGEVLDGFRLKKIWYLFTTDSLSRGIDFYNIRSVINYDL 348
Query: 342 PDNLENYIHRIGRSGR---------------FGRKGVAINFITK--EERPK 375
P ++HRIGR R FGR GV F+ + E PK
Sbjct: 349 PSTKTQFVHRIGRINRNCQGQKIYTIYSSEDFGRIGVVAEFLEENGHEVPK 399
>Hs22054507 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 729
Score = 85.9 bits (211), Expect = 1e-16
Identities = 69/299 (23%), Positives = 132/299 (44%), Gaps = 47/299 (15%)
Query: 60 GKDVIAQAQSGTGKTATFTIGLLQAIDSKSKELQALVLSPTRELASQSESVISNLGDYLN 119
G+D++A A++G+ T+ L ++ +LSPTRELA Q + +
Sbjct: 406 GRDLLAAAKTGS---VELTVKLKFMPTNRPG---VFILSPTRELAMQ---IFGGANTHHM 456
Query: 120 VTAHACTGGKALQQDIKKVSKNCQVVSGTPGRVLDMIKRQV-LNVRNCKILVLDEADELL 178
T GG + +K++ ++ TPG +LD ++ +N + LV+DEAD +L
Sbjct: 457 HTYGLIMGGDNTSAEAQKLANGINIIVATPGHLLDYMQNTPGFMYKNLQYLVIDEADRIL 516
Query: 179 GETLGFKQQIYDIFTKLPPTIQVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVI 238
+GF++++ I LP +++SAT ++ + D +I +K+ I
Sbjct: 517 D--VGFEEELKQIIKLLPTCRHTMLLSATQTRKV--------EDLARISLKKGAIKNRKR 566
Query: 239 KQYYVDVEKEEWKFDTLCDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDM 298
K ++F ++ V + L + + ++HG
Sbjct: 567 K---------------------------IMVFFSSSMSVKYHYELLNYMDLPILAIHGKQ 599
Query: 299 KQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGR 357
KQ + F + +L+ DV ARG+D+ ++ ++ +D D+ + YIHR+ R+ R
Sbjct: 600 KQNKGTTTFFQFCKADSGILLCMDVAARGLDIPEVDWIVQHDPLDDPKEYIHRVSRTAR 658
>7293348 [A] KOG0348 ATP-dependent RNA helicase
Length = 975
Score = 85.9 bits (211), Expect = 1e-16
Identities = 67/233 (28%), Positives = 111/233 (46%), Gaps = 37/233 (15%)
Query: 168 ILVLDEADELLGE-------TLGFKQQIYDIFTKLPPTIQVVVVSATMSKDILEITKKF- 219
I L E D+ LGE L + + + +PP +++V +S+ ++K++ K+F
Sbjct: 570 IEALLEVDDGLGEYQEDVTGVLSIPENLQLSYVVVPPKLRLVALSSLLAKEVDASPKQFK 629
Query: 220 ----MSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLTITQCVIFCNTRK 275
MS + D ++ + + + +D E E+ K D+ D + + Q + F
Sbjct: 630 AIVFMSTTEMVNFHHDMLN-EALTRRVLDEEDEQEKGDSDDD--GDIPLLQGLRFFK--- 683
Query: 276 KVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISL 335
+HG M Q ER V FR + VL++TDV RGIDV I L
Sbjct: 684 ------------------LHGSMTQTERQGVFRGFRDCASCVLLATDVVGRGIDVPDIKL 725
Query: 336 VINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIESHYRIKIK 388
V+ Y P +++HR+GR+ R GRKG A+ F+T E ++ +E RI+I+
Sbjct: 726 VVQYTPPQTTADFVHRVGRTARAGRKGRAVLFLTPSEAQFVRHLEKK-RIRIQ 777
Score = 79.3 bits (194), Expect = 9e-15
Identities = 49/186 (26%), Positives = 99/186 (52%), Gaps = 21/186 (11%)
Query: 60 GKDVIAQAQSGTGKTATFTIGLLQAIDSKSKELQ------ALVLSPTRELASQSESVISN 113
GKDV+ ++Q+G+GKT + + L++ + + +Q ALV+ PTREL Q+ +I
Sbjct: 365 GKDVLVRSQTGSGKTLAYALPLVELLQKQQPRIQRKDGVLALVIVPTRELVMQTYELIQK 424
Query: 114 L-GDYLNVTAHACTGGKALQQDIKKVSKNCQVVSGTPGRVLD-MIKRQVLNVRNCKILVL 171
L Y + + GG++ + + ++ K ++ GTPGR++D ++ + + L+L
Sbjct: 425 LVKPYTWIVPGSLLGGESRKSEKARLRKGINILIGTPGRLVDHLLHTASFKLTKLQFLIL 484
Query: 172 DEADELLGETLGFKQQIYDIFTKLP-----------PTIQVVVVSATMSKDILEITKKFM 220
DEAD LL LG+++ + + + P +Q +++SAT++ + ++ +
Sbjct: 485 DEADRLL--ELGYERDVKQLVEAIDKQRAECEDKELPQLQRMLLSATLTSQVQQLAGLTL 542
Query: 221 SDPVKI 226
+P+ I
Sbjct: 543 KNPLYI 548
>CE29051 [A] KOG0335 ATP-dependent RNA helicase
Length = 1016
Score = 84.0 bits (206), Expect = 4e-16
Identities = 75/282 (26%), Positives = 137/282 (47%), Gaps = 29/282 (10%)
Query: 60 GKDVIAQAQSGTGKTATFTIGLL----------QAIDSKSKELQALVLSPTRELASQSES 109
G DV+A A +G+GKT F I + + + + + L+++PTREL +Q+ +
Sbjct: 736 GDDVVACAHTGSGKTLAFLIPFVIKLMEEFEKDRDVTDEKPSPRLLIVAPTRELVNQTFT 795
Query: 110 VISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQ--VVSGTPGRVLDMIKRQVLNVRNCK 167
L + GG + +++ + Q ++ T GR+ D + +++ K
Sbjct: 796 TARQLTYETGLKCGLAFGGYSRNANVQHLRSFSQLNILVATMGRLQDFVNAGEVSLSKMK 855
Query: 168 ILVLDEADELLGETLGFKQQIYDIF-TKLPPTIQVVVVSATMSKDIL-EITKKFMSDPVK 225
+VLDEAD ++ +++ F +++ I + T Q V+ SA+ S+D+ + KF+ +
Sbjct: 856 YIVLDEADRMV-DSIDFGEEVSKIIGSPGERTQQTVLFSASFSEDLQSDDLPKFVKEGYT 914
Query: 226 IL-VKRDEISLDVIKQYYVDVEKEEWKFDTLCDLY--DSLTIT----------QCVIFCN 272
+L V + + + I Q + V + E K D + L D T+T + +IF N
Sbjct: 915 MLQVDKFGTANEKIDQKILPVPRTE-KRDAIYKLLGIDENTVTLLPDAPIEKQKTLIFVN 973
Query: 273 TRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGK 314
+ K D L+ ++ S SMH QE+RD+ ++DFR GK
Sbjct: 974 SVKFCDTLAALISSAGVSTISMHSYQNQEQRDRTLDDFRRGK 1015
>Hs20336298 [A] KOG0348 ATP-dependent RNA helicase
Length = 585
Score = 82.8 bits (203), Expect = 8e-16
Identities = 81/324 (25%), Positives = 144/324 (44%), Gaps = 68/324 (20%)
Query: 60 GKDVIAQAQSGTGKTATFTIGLLQAIDSKSKELQ------ALVLSPTRELASQS-ESVIS 112
G+D + ++Q+G+GKT + I ++Q++ + ++Q ALVL PTRELA QS ++V
Sbjct: 268 GRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPYALVLVPTRELALQSFDTVQK 327
Query: 113 NLGDYLNVTAHACTGGKALQQDIKKVSKNCQVVSGTPGRVLDMIK-RQVLNVRNCKILVL 171
L + + GG+ + + ++ K ++ TPGR++D IK + ++ + LV
Sbjct: 328 LLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIKSTKNIHFSRLRWLVF 387
Query: 172 DEADELLGETLGFKQQIYDIFTKLPPTIQV---VVVSATMSKDILEITKKFMSDPVKILV 228
DEAD +L LGF++ I I + Q V++SAT+++ + + + DPV I V
Sbjct: 388 DEADRIL--DLGFEKDITVILNAVNAECQKRQNVLLSATLTEGVTRLADISLHDPVSISV 445
Query: 229 -------------------------KRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLT 263
K D ++ + +V V + + L +
Sbjct: 446 LDKSHDQLNPKDKAVQEVCPPPAGDKLDSFAIPESLKQHVTVVPSKLRLVCLA----AFI 501
Query: 264 ITQC--------VIFCNTRKKVDWLSRKLTQTNFSVSS------------------MHGD 297
+ +C V+F ++ + V++ QT S S +HG
Sbjct: 502 LQKCKFEEDQKMVVFFSSCELVEFHYSLFLQTLLSSSGAPASGQLPSASMRLKFLRLHGG 561
Query: 298 MKQEERDQVMNDFRSGKARVLIST 321
M+QEER V +F + VL+ T
Sbjct: 562 MEQEERTAVFQEFSHSRRGVLLCT 585
>Hs9506609 [A] KOG0340 ATP-dependent RNA helicase
Length = 257
Score = 80.9 bits (198), Expect = 3e-15
Identities = 66/256 (25%), Positives = 112/256 (42%), Gaps = 5/256 (1%)
Query: 23 ATFESMNLKPDLLRGIYFYGFEYPXXXXXXXXXXXXXGKDVIAQAQSGTGKTATFTIGLL 82
A F + L L+ G + P G+D + A++G+GKTA F + +L
Sbjct: 2 AGFAELGLSSWLVEQCRQLGLKKPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPIL 61
Query: 83 QAIDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNC 142
Q + + LVL+PTRELA Q LG L + GG + ++S+
Sbjct: 62 QKLSEDPYGIFCLVLTPTRELAYQIAERFRVLGKPLGLKDCIIVGGMDMVAQALELSRKP 121
Query: 143 QVVSGTPGRVLDMIK-RQVLNVRNCKILVLDEADELLGE-TLGFKQQIYDIFTKLPPTIQ 200
VV TPGR+ D ++ +++ + LV+DEAD LL + F + I +P Q
Sbjct: 122 HVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARRQ 181
Query: 201 VVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVE---KEEWKFDTLCD 257
++ SAT++ + E+ + P + +++ + Q Y+ V K+ + +
Sbjct: 182 TLLFSATLTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKVKDAYLVHLIQR 241
Query: 258 LYDSLTITQCVIFCNT 273
D +IF NT
Sbjct: 242 FQDEHEDWSIIIFTNT 257
>ECU07g1130 [L] KOG0351 ATP-dependent DNA helicase
Length = 766
Score = 72.8 bits (177), Expect = 8e-13
Identities = 77/328 (23%), Positives = 138/328 (41%), Gaps = 22/328 (6%)
Query: 60 GKDVIAQAQSGTGKTATFTIGLL--QAIDSKSKELQALVLSPTRELASQSESVI---SNL 114
GKDV +G GK+ + + L I L +LV R L + + SNL
Sbjct: 252 GKDVFVLMPTGGGKSICYQLPALVYDGITIVVSPLLSLVQDQIRNLLQKGILALPINSNL 311
Query: 115 GDYLNVTAHACTGGKALQQDIKKVSKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEA 174
GG L I K+ + G D++ V R K V+DEA
Sbjct: 312 SRAERDLVFQVLGGDEL---ICKIFYVTPELIAKSGHFHDVLSGLVCRGR-LKRFVIDEA 367
Query: 175 DELLGETLGFKQQIYDIFTKLP--PTIQVVVVSATMSK----DILEITKKFMSDPVKILV 228
+ F+ ++ + P++ ++ ++AT ++ DILE + K+
Sbjct: 368 HCVSQWGHDFRPDYKELGSMRARYPSVPIIALTATATQKVEMDILENLGIRGCETFKMSF 427
Query: 229 KRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTN 288
R + +Y V + + D + +I+C ++K+ + +S KL +
Sbjct: 428 NRSNL------RYEVRAKTSTVELDIASFVQTHFPDCCGIIYCTSKKECEMISEKLGKY- 480
Query: 289 FSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENY 348
+ H + + ER+ V + G+ +V+++T + GID + + VI+Y IP +LE Y
Sbjct: 481 MGTAFYHAGLSKNERNSVQEKWNRGEFKVIVATIAFGMGIDKKDVRFVIHYCIPKSLEGY 540
Query: 349 IHRIGRSGRFGRKGVAINFITKEERPKL 376
GR+GR G + V + F T ++ K+
Sbjct: 541 YQETGRAGRDGLESVCVLFYTYGDKKKI 568
>SPAC212.11 [L] KOG0351 ATP-dependent DNA helicase
Length = 1887
Score = 72.0 bits (175), Expect = 1e-12
Identities = 37/111 (33%), Positives = 65/111 (58%), Gaps = 6/111 (5%)
Query: 266 QCVIFCNTRKKVDWLSRKLTQTNF----SVSSMHGDMKQEERDQVMNDFRS--GKARVLI 319
+ +IFC T+K V+++ R+L Q++ V+ GD+ EER + FR+ GK R++I
Sbjct: 1417 RAIIFCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMI 1476
Query: 320 STDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITK 370
+T + GI+ + LV++Y +P + +Y+ GR+GR G+ +A F K
Sbjct: 1477 ATKAFGLGINYMGVRLVVHYGLPASSMDYVQETGRAGRDGKYAIAALFYEK 1527
>Hs22063157 [A] KOG0329 ATP-dependent RNA helicase
Length = 186
Score = 71.2 bits (173), Expect = 2e-12
Identities = 50/190 (26%), Positives = 92/190 (48%), Gaps = 49/190 (25%)
Query: 206 ATMSKDILEITKKFMSDPVKILVKRD-EISLDVIKQYYVDVE--KEEWKFDTLCDLYDSL 262
AT+SK+I + KFM DPV+I V + ++ L ++QYY+ ++ ++ WK DL + L
Sbjct: 29 ATLSKEIRPVCHKFMQDPVEIFVDNEMKLMLHGLQQYYMKLKDNQKNWK---RYDLLNVL 85
Query: 263 TITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTD 322
Q +IF +K +R R A++L
Sbjct: 86 EFNQVMIF---------------------------LKSVQR-------RIASAQLL---- 107
Query: 323 VWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPK-LKEIES 381
G+D++++++ NYD+P++ + Y+H + R+ RFG K +AI F++ E K L +++
Sbjct: 108 ----GMDIERVNIAFNYDMPEDSDTYLHWVARASRFGTKSLAITFVSDENDAKILNDMQD 163
Query: 382 HYRIKIKPTP 391
+ + P
Sbjct: 164 RFEVNRSDLP 173
>At1g27880 [L] KOG0351 ATP-dependent DNA helicase
Length = 941
Score = 70.5 bits (171), Expect = 4e-12
Identities = 31/116 (26%), Positives = 60/116 (51%)
Query: 264 ITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDV 323
I +++C + + D +S+ L N + H + ++R ++ F S K RV+++T
Sbjct: 505 IRSIIVYCKFQYETDMISKYLRDNNINAKGYHSGLPAKDRVRIQESFCSNKIRVVVATVA 564
Query: 324 WARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEI 379
+ G+D + VI++ +P ++E Y+ IGR+GR GR F + KL+ +
Sbjct: 565 FGMGLDKGDVGAVIHFSVPGSMEEYVQEIGRAGRDGRLSYCHLFYDNDTYLKLRSL 620
>7299503 [L] KOG0351 ATP-dependent DNA helicase
Length = 1487
Score = 68.6 bits (166), Expect = 2e-11
Identities = 73/350 (20%), Positives = 144/350 (40%), Gaps = 58/350 (16%)
Query: 60 GKDVIAQAQSGTGKTATFTIG--LLQAIDSKSKELQALVLSPTRELASQSESVISNLGDY 117
G D +G GK+ + + L + + L++L+ +LAS
Sbjct: 752 GNDCFVLMPTGGGKSLCYQLPAILTEGVTIVISPLKSLIFDQINKLAS------------ 799
Query: 118 LNVTAHACTGGK------ALQQDIKKVSKNCQVVSGTPGRVLDMIKRQ----VLNVRN-C 166
L++ A + +G + A+ +D++ +++ TP ++ + Q LN N
Sbjct: 800 LDICAKSLSGEQKMADVMAIYRDLESQPPMVKLLYVTPEKISSSARFQDTLDTLNSNNYI 859
Query: 167 KILVLDEAD--ELLGETLGFKQQIYDIFTKLPPTIQVVVVSATMSKDI---------LEI 215
V+DEA G + + K P + + ++AT + + L+
Sbjct: 860 SRFVIDEAHCVSQWGHDFRPDYKKLGVLKKRFPNVPTIALTATATPRVRLDILAQLNLKN 919
Query: 216 TKKFMSD------PVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLTITQCVI 269
K F+S ++L K+ +LD I +Y + + F +I
Sbjct: 920 CKWFLSSFNRSNLRYRVLPKKGVSTLDDISRY---IRSKPQHFSG-------------II 963
Query: 270 FCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGID 329
+C +RK+ D S+K+ + S H + +R+ D+ +GK RV+ +T + GID
Sbjct: 964 YCLSRKECDETSKKMCKDGVRAVSYHAGLTDTDRESRQKDWLTGKMRVICATVAFGMGID 1023
Query: 330 VQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEI 379
+ V++Y +P ++E Y GR+GR G I + + ++K++
Sbjct: 1024 KPDVRFVLHYSLPKSIEGYYQEAGRAGRDGDVADCILYYNYSDMLRIKKM 1073
>Hs22044561 [A] KOG0331 ATP-dependent RNA helicase
Length = 964
Score = 68.2 bits (165), Expect = 2e-11
Identities = 43/150 (28%), Positives = 77/150 (50%), Gaps = 4/150 (2%)
Query: 225 KILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLTITQ--CVIFCNTRKKVDWLSR 282
K+L K E++ V K + K + + D+ + ++ +IFC TRK V ++
Sbjct: 525 KLLNKARELANQVAKDFKDKTRKLSMRPAVIGDVLQVYSGSEGRAIIFCETRKNVTEMAM 584
Query: 283 KLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIP 342
+ +HGD+ Q +R+ + FR +VL++T+V A + + ++ LVI + P
Sbjct: 585 N-PHIKQNAQCLHGDIAQSQREITLKGFREDSFKVLVATNVAAHSLHIPEVDLVIQHSPP 643
Query: 343 DNLENYIHRIGRSGRFGRKGVAINFITKEE 372
++E IHR G +GR G +G FI +E+
Sbjct: 644 QDVEARIHRSGCTGRAG-QGFVYVFINQEK 672
>CE06825 [A] KOG0335 ATP-dependent RNA helicase
Length = 528
Score = 66.6 bits (161), Expect = 6e-11
Identities = 80/346 (23%), Positives = 149/346 (42%), Gaps = 44/346 (12%)
Query: 60 GKDVIAQAQSGTGKTATFTIGLLQAI--DSKSKELQALVLSPTRELASQSESVISNLGDY 117
G+ ++ +A +G GKT F I ++A + +S + SP+ + + + +++ L +
Sbjct: 130 GRGLVVEAPTGIGKTYAFLIPAIEAALKNRQSNCFEYTKPSPSILIMASTSALVDQLFNR 189
Query: 118 LN-VTAHACTGGKALQQDIK--KVSKN-------CQVVSGTPGRVLDMIKRQVLNVRNCK 167
+ C +DIK K+ N C + T G++ I+ + + N K
Sbjct: 190 CELILGLQCMDNVEPIRDIKIDKLVANHPFTKGQCDIAFCTIGKLKATIECGDVCLDNLK 249
Query: 168 ILVLDEADELLGETLGFKQQIYDIFTKLPP----TIQVVVVSATMSKD--------ILEI 215
++LDEAD+++ + F I I +L +Q SAT +K+ +L++
Sbjct: 250 TIILDEADKMI-DNCAFGPDINWILDQLKEENLENLQSCFFSATYNKNANGTIALTVLQM 308
Query: 216 TKKFMSDPVKILV---KRDEISLDVIKQYYV---DVEKEEW--KFDTLCDLYDS-LTITQ 266
DP +++ I+ V++ D+ W K + L D L T
Sbjct: 309 RMLGEDDPWSVIICPRMSGYITQRVVRVGRGRPNDIRSHPWVIKMGIIRKLIDDDLKETG 368
Query: 267 C----------VIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKAR 316
C IFC T ++V ++ L Q ++ + + + ++ +ND K
Sbjct: 369 CSKDGPYNETIAIFCETVQRVTQVTMALRQLGYNFKPVCSMITKNQQLVTVNDLEFRKIH 428
Query: 317 VLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKG 362
++ T++ ARGIDV + I ++ + + Y HRIGR GR G G
Sbjct: 429 GVVCTNILARGIDVSSVKHTIIMEMSADFDTYKHRIGRVGRDGCGG 474
>Hs20482355 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 99
Score = 65.5 bits (158), Expect = 1e-10
Identities = 34/66 (51%), Positives = 45/66 (67%), Gaps = 7/66 (10%)
Query: 329 DVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIESHYRIKIK 388
DVQQ+SLVINYD+ N EN IHRIGR GVAINF+T+E++ L +IE+ Y ++
Sbjct: 37 DVQQVSLVINYDLTTNNENCIHRIGR-------GVAINFVTEEDKIILHDIETFYNNTVE 89
Query: 389 PTPANL 394
P N+
Sbjct: 90 EMPMNV 95
>At1g59990 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 581
Score = 65.5 bits (158), Expect = 1e-10
Identities = 42/145 (28%), Positives = 75/145 (50%), Gaps = 5/145 (3%)
Query: 238 IKQYYVDVEKEEWKFDTLCDLYDSLTIT---QCVIFCNTRKKVDWLSRKLTQTNFSVSSM 294
+KQ +V+V + + D L + + T + ++F NT + V+ ++ L + +
Sbjct: 396 LKQKWVEVTVDS-QVDALIEAVKNNNNTNTERTMVFANTVEAVEAVADILEKASIQCYRY 454
Query: 295 HGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGR 354
H + K +ER ++ DFR V + TD ARG+DV +S VI D + +++HRIGR
Sbjct: 455 HKNHKLDERANILADFRE-TGGVFVCTDAAARGVDVPNVSHVIQADFASSAVDFLHRIGR 513
Query: 355 SGRFGRKGVAINFITKEERPKLKEI 379
+ R G+ G + T+ R ++ I
Sbjct: 514 TARAGQYGTVTSLYTEANRDLVEAI 538
>YMR190c [L] KOG0351 ATP-dependent DNA helicase
Length = 1447
Score = 64.3 bits (155), Expect = 3e-10
Identities = 66/320 (20%), Positives = 137/320 (42%), Gaps = 17/320 (5%)
Query: 60 GKDVIAQAQSGTGKTATFTIGLLQAIDSKSKELQALVLSPTRELASQSESVISNLGDYLN 119
GKDV +G GK+ + + + + S +V+SP L + N +
Sbjct: 693 GKDVFVLMPTGGGKSLCYQLPAV--VKSGKTHGTTIVISPLISLMQDQVEHLLNKNIKAS 750
Query: 120 VTAHACTGGKALQQDIKKVSKNCQVVSGTPGRVL--DMIKRQVLNVR---NCKILVLDEA 174
+ + T + Q ++ +V +P + + KR + + +V+DEA
Sbjct: 751 MFSSRGTAEQRRQTFNLFINGLLDLVYISPEMISASEQCKRAISRLYADGKLARIVVDEA 810
Query: 175 DELLGETLGFKQQIYDI--FTKLPPTIQVVVVSATMSKDI-LEITKKF-MSDPVKILVKR 230
+ F+ ++ F + P I ++ ++AT S+ + ++I + +PV +
Sbjct: 811 HCVSNWGHDFRPDYKELKFFKREYPDIPMIALTATASEQVRMDIIHNLELKEPVFLKQSF 870
Query: 231 DEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLTITQC-VIFCNTRKKVDWLSRKLTQTNF 289
+ +L YY +K + +CD S Q +I+C+++K + S ++ +
Sbjct: 871 NRTNL-----YYEVNKKTKNTIFEICDAVKSRFKNQTGIIYCHSKKSCEQTSAQMQRNGI 925
Query: 290 SVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYI 349
+ H M+ +ER V +++ + +V+ +T + GID + V ++ +P LE Y
Sbjct: 926 KCAYYHAGMEPDERLSVQKAWQADEIQVICATVAFGMGIDKPDVRFVYHFTVPRTLEGYY 985
Query: 350 HRIGRSGRFGRKGVAINFIT 369
GR+GR G I + +
Sbjct: 986 QETGRAGRDGNYSYCITYFS 1005
>At1g10930 [L] KOG0351 ATP-dependent DNA helicase
Length = 665
Score = 63.9 bits (154), Expect = 4e-10
Identities = 74/344 (21%), Positives = 146/344 (41%), Gaps = 27/344 (7%)
Query: 60 GKDVIAQAQSGTGKTATFTIGLLQAIDSKSKELQALVLSPTRELASQSESVISNLGDYLN 119
G DV +G GK+ T+ + L LV+SP L S + I NL N
Sbjct: 139 GSDVFVLMPTGGGKSLTYQLPALICGGI------TLVISP---LVSLIQDQIMNLLQ-AN 188
Query: 120 VTAHACTGGKA------LQQDIKKVSKNCQVVSGTPGRVL--DMIKRQVLNVRNCKIL-- 169
+ A + + G + Q++ +++ TP +V D + R + N+ + +L
Sbjct: 189 IPAASLSAGMEWAEQLKIFQELNSEHSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLAR 248
Query: 170 -VLDEAD--ELLGETLGFKQQIYDIFTKLPPTIQVVVVSATMSKDILEITKKFMSDPVKI 226
V+DEA G Q I + P I V+ ++AT + + E + + V
Sbjct: 249 FVIDEAHCVSQWGHDFRPDYQSLGILKQKFPNIPVLALTATATASVKEDVVQALG-LVNC 307
Query: 227 LVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLTITQC-VIFCNTRKKVDWLSRKLT 285
+V R + + +Y V K + + + +C +I+C +R + +S +L
Sbjct: 308 VVFRQSFNRPNL--WYSVVPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVSERLQ 365
Query: 286 QTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNL 345
+ + HG M+ E+R + + + ++ +T + GI+ + VI++ +P ++
Sbjct: 366 EFGHKAAFYHGSMEPEQRAFIQTQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSI 425
Query: 346 ENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIESHYRIKIKP 389
E Y GR+GR G++ + + + ++K + S + P
Sbjct: 426 EGYHQECGRAGRDGQRSSCVLYYGYGDYIRVKHMISQGGVDQSP 469
>SPAC2G11.12 [L] KOG0351 ATP-dependent DNA helicase
Length = 1328
Score = 63.5 bits (153), Expect = 5e-10
Identities = 72/342 (21%), Positives = 148/342 (43%), Gaps = 39/342 (11%)
Query: 60 GKDVIAQAQSGTGKTATFTIGLLQAIDSKSKELQALVLSPTRELASQSESVISNLGDYLN 119
GKDV +G GK+ + + + I+ + LV+SP L S + + +L LN
Sbjct: 534 GKDVFILMPTGGGKSLCYQLPAV--IEGGASRGVTLVISP---LLSLMQDQLDHLRK-LN 587
Query: 120 VTAHACTGGKALQQDIKKVS----KNCQVV-----------SGTPGRVLDMIKRQVLNVR 164
+ + +G + + + +S KN V +G RVL + + L R
Sbjct: 588 IPSLPLSGEQPADERRQVISFLMAKNVLVKLLYVTPEGLASNGAITRVLKSLYERKLLAR 647
Query: 165 NCKILVLDEADELLGETLGFKQQ------IYDIFTKLPPTIQVVVVSATMSKDILEITKK 218
+V+DEA + F+ + D + +P + + KDI+ +
Sbjct: 648 ----IVIDEAHCVSHWGHDFRPDYKQLGLLRDRYQGIPFMALTATANEIVKKDIINTLRM 703
Query: 219 FMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLTITQCVIFCNTRKKVD 278
+K R + ++ + D+ E ++F + L++S +I+C +R +
Sbjct: 704 ENCLELKSSFNRPNLFYEIKPKK--DLYTELYRFISNGHLHES-----GIIYCLSRTSCE 756
Query: 279 WLSRKLTQT-NFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVI 337
++ KL H +++ ER ++ N+++SG +++++T + G+D + VI
Sbjct: 757 QVAAKLRNDYGLKAWHYHAGLEKVERQRIQNEWQSGSYKIIVATIAFGMGVDKGDVRFVI 816
Query: 338 NYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEI 379
++ P +LE Y GR+GR G+ I F + ++ +++
Sbjct: 817 HHSFPKSLEGYYQETGRAGRDGKPAHCIMFYSYKDHVTFQKL 858
>Hs20479405 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 111
Score = 62.8 bits (151), Expect = 9e-10
Identities = 28/57 (49%), Positives = 39/57 (68%)
Query: 341 IPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEIESHYRIKIKPTPANLEEL 397
+P + ENYIHRI R G FGRKGVAIN +T+E++ + IE+ Y I+ P N+ +L
Sbjct: 54 LPAHRENYIHRISRDGWFGRKGVAINMVTEEDKGTFQNIENFYNTSIEEIPLNVPDL 110
>Hs22045464 [A] KOG0343 RNA Helicase
Length = 597
Score = 61.2 bits (147), Expect = 3e-09
Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 8/140 (5%)
Query: 265 TQCVIFCNTRKKVDWLSRKLTQT-------NFSVSSMHGDMKQEERDQVMNDFRSGKARV 317
T I N KK L TQT S+ + +Q R +V N+F +A V
Sbjct: 176 TMNAIIENLPKKRQTLLFSATQTISVKDLARLSLKNTEYVWQQMRRMEVYNEFVRKRAAV 235
Query: 318 LISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLK 377
L ++DV ARG+D ++ + +D P++ YIHR GR+ R+ G A+ + E+ ++
Sbjct: 236 LFASDVAARGLDFPAVNWALQFDCPEDANTYIHRAGRTARYKEDGEALLILLASEKAIVQ 295
Query: 378 EIESHYRIKIKPTPANLEEL 397
++ ++ IK N E+L
Sbjct: 296 QL-LQKKVPIKEIKINPEKL 314
>At4g35740_2 [L] KOG0351 ATP-dependent DNA helicase
Length = 625
Score = 61.2 bits (147), Expect = 3e-09
Identities = 28/110 (25%), Positives = 62/110 (55%)
Query: 268 VIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARG 327
+I+C R D LS L+ S ++ H + + R V++D+ S K +++++T + G
Sbjct: 176 IIYCLERTTCDDLSVHLSSIGISSAAYHAGLNSKMRSTVLDDWLSSKKQIIVATVAFGMG 235
Query: 328 IDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLK 377
ID + + +V +++IP ++E++ GR+GR ++ + ++R K++
Sbjct: 236 IDKKDVRMVCHFNIPKSMESFYQESGRAGRDQLPSRSVLYYGVDDRKKME 285
>Hs4557365 [L] KOG0351 ATP-dependent DNA helicase
Length = 1417
Score = 59.7 bits (143), Expect = 7e-09
Identities = 65/303 (21%), Positives = 130/303 (42%), Gaps = 27/303 (8%)
Query: 95 LVLSPTRELASQSESVISNLGDYLNVTAHACTGGKA------LQQDIKKVSKNCQVVSGT 148
+V+SP R L +++L ++ A TG K + + K +++ T
Sbjct: 711 VVISPLRSLIVDQVQKLTSL----DIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVT 766
Query: 149 PGRVL--DMIKRQVLNVRNCKIL---VLDEADELLGETLGFKQQI--YDIFTKLPPTIQV 201
P ++ + + + N+ K+L V+DEA + F+Q ++ + P++ V
Sbjct: 767 PEKICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPV 826
Query: 202 VVVSAT----MSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCD 257
+ ++AT + KDIL K + R + K Y + + ++ FD L
Sbjct: 827 MALTATANPRVQKDILTQLKILRPQVFSMSFNRHNL-----KYYVLPKKPKKVAFDCLEW 881
Query: 258 LYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDF-RSGKAR 316
+ +I+C +R++ D ++ L + + + H + RD+V + +
Sbjct: 882 IRKHHPYDSGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQ 941
Query: 317 VLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKL 376
V+ +T + GID + VI+ +P ++E Y GR+GR G + F T + +L
Sbjct: 942 VICATIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRL 1001
Query: 377 KEI 379
K +
Sbjct: 1002 KRL 1004
>7300752 [R] KOG0354 DEAD-box like helicase
Length = 1383
Score = 59.7 bits (143), Expect = 7e-09
Identities = 37/129 (28%), Positives = 71/129 (54%), Gaps = 16/129 (12%)
Query: 265 TQCVIFCNTRKKVDWLSRKLTQ------------TNFSVSSMHGDMKQEERDQVMNDFRS 312
++ ++FC R+ V + R L Q +V + + + Q+++ Q+M DFRS
Sbjct: 433 SRAIVFCEYRESVMLIHRLLLQHRPVLRPRCFVGQGSTVGASYA-LTQKQQLQIMTDFRS 491
Query: 313 GKARVLISTDVWARGIDVQQISLVINYDI-PDNLENYIHRIGRSGRFGRKGVAINFITK- 370
G + VL++T + G+DV ++ +++ +DI N +I RIGR+GR + G + +T+
Sbjct: 492 GTSNVLVATSIGEEGLDVGEVEMIVCFDICSTNPTRFIQRIGRTGR-KKNGEVVMLVTEG 550
Query: 371 EERPKLKEI 379
E+ LK++
Sbjct: 551 REQQVLKDV 559
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.319 0.136 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,981,112
Number of Sequences: 60738
Number of extensions: 829039
Number of successful extensions: 3628
Number of sequences better than 1.0e-05: 262
Number of HSP's better than 0.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2635
Number of HSP's gapped (non-prelim): 335
length of query: 398
length of database: 30,389,216
effective HSP length: 108
effective length of query: 290
effective length of database: 23,829,512
effective search space: 6910558480
effective search space used: 6910558480
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)