ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactI2856    suspect: LH   S     KOG4829  Function unknown                                               Uncharacterized conserved protein

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactI2856 958239  959084 282  
         (282 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YCR016w [S] KOG4829 Uncharacterized conserved protein                 201   1e-51

>YCR016w [S] KOG4829 Uncharacterized conserved protein
          Length = 290

 Score =  201 bits (510), Expect = 1e-51
 Identities = 120/292 (41%), Positives = 173/292 (59%), Gaps = 37/292 (12%)

Query: 1   MSE-HVPAWKRFQIKKSE-----------EGNQIDDELDSLIVSTHLSNGSLSKKEKRRI 48
           MSE HVPAWKR  +K+             + N IDD  D L ++THLS G+L+KKEK+RI
Sbjct: 1   MSENHVPAWKRIALKRQTISSGDESKEKGQSNLIDD--DPLNITTHLSTGNLTKKEKKRI 58

Query: 49  IRGGNADSKSTGNKVAKKSKDRKREKLAKEDRLKKKETVLKDQLRYLIDFYTLKLEVELP 108
           I G +  S   G +V+K    +K+EKL+K+++  KK  +LKDQLRYLI+F+  K E + P
Sbjct: 59  INGESKSSTKKGKRVSKPGT-KKKEKLSKDEKNSKKNKILKDQLRYLIEFFRTKSESKFP 117

Query: 109 EAVKELPSVKENVSIISPSEELADKNVVRDVWKFSKQKQNWLIKHFVITDEIPSAFNPLL 168
             + EL SVKEN       +E ++  VV +VWKFSKQKQNWLIKHF   DEIPS +N LL
Sbjct: 118 TGILELESVKENYGDSLIKDEPSESGVV-EVWKFSKQKQNWLIKHFFNLDEIPSVYNDLL 176

Query: 169 VRYFQDLQGGSKAQLQESCLDVIEKQNKYLEQQKEEM-AKIVLGEATEASKDQEKQSAD- 226
           + YF+DLQG SK +L   C   +++ N Y+E Q+ ++ A I   +A+E    +EK+  + 
Sbjct: 177 LLYFRDLQGKSKEELISKCKGKLKQWNDYVEDQETKIKALIAEDKASEPINGEEKEEGEK 236

Query: 227 ----DESKDKDVKTEMXXXXXXXXXXTANKINEILPPSQELLERVRSMLDTW 274
               ++ K K+V+ E                 E+  P++EL++R   +L+ W
Sbjct: 237 DGNAEQGKQKEVQDEQ---------------EEVQMPNKELVQRSLKLLEIW 273


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.309    0.128    0.344 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,559,182
Number of Sequences: 60738
Number of extensions: 720917
Number of successful extensions: 4969
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4965
Number of HSP's gapped (non-prelim): 1
length of query: 282
length of database: 30,389,216
effective HSP length: 105
effective length of query: 177
effective length of database: 24,011,726
effective search space: 4250075502
effective search space used: 4250075502
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)