ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactI2972    suspect: LH   R     KOG2979  General function prediction only                               Protein involved in DNA repair

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactI2972 991845  992612 256  
         (256 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YEL019c [R] KOG2979 Protein involved in DNA repair                    136   3e-32

>YEL019c [R] KOG2979 Protein involved in DNA repair
          Length = 267

 Score =  136 bits (342), Expect = 3e-32
 Identities = 67/251 (26%), Positives = 128/251 (50%), Gaps = 7/251 (2%)

Query: 7   LPDVLPITSKRHDILHQITLPDLSREISAAKSSIQDSVIGLLSSYPKYPTDRVDEINELE 66
           +P  +P+  K     H +   DLS         I +++  L+ S         +++ ++ 
Sbjct: 8   IPKSVPLHPKSGKYFHNLHARDLSNIYQQCYKQIDETINQLVDSTSPSTIGIEEQVADIT 67

Query: 67  SAYKDLLRMESRQKFLNSKLTEMKSKYTQQSSDAPRLNRENWDSFLNNEYNLINVRKEWI 126
           S YK L   ES     +  + ++K  + Q S   P+++   WD +   E     + + ++
Sbjct: 68  STYKLLSTYESESNSFDEHIKDLKKNFKQSSDACPQIDLSTWDKYRTGELTAPKLSELYL 127

Query: 127 KLQSEE-VEIDKKDQWLRVFCALPYIWSDPTRIIPNDPFETDAAQEEEGEDIKVEGGVVE 185
            + + E   +      L++   LPYIW+DPT +IP      D     + +D+++EGG +E
Sbjct: 128 NMPTPEPATMVNNTDTLKILKVLPYIWNDPTCVIP------DLQNPADEDDLQIEGGKIE 181

Query: 186 LTCPVSVKKFQSPMISVKCHHTIDNESLQSLFQQGKSIQCPVSGCNKTLTSRDFVPDRLM 245
           LTCP++ K +++P+IS KC+H  D + +Q+  Q   +  CP + C++ ++ RDFV D +M
Sbjct: 182 LTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIM 241

Query: 246 HIRVLISELRE 256
            +R  I++++E
Sbjct: 242 ELRCKIAKMKE 252


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.316    0.133    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,166,308
Number of Sequences: 60738
Number of extensions: 636177
Number of successful extensions: 2484
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2481
Number of HSP's gapped (non-prelim): 1
length of query: 256
length of database: 30,389,216
effective HSP length: 104
effective length of query: 152
effective length of database: 24,072,464
effective search space: 3659014528
effective search space used: 3659014528
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)