ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactI3016    suspect: LH   J     KOG3301  Translation, ribosomal structure and biogenesis                Ribosomal protein S4

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactI3016 1008568 1007123 -482 
         (482 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AtCh025 [J] KOG3301 Ribosomal protein S4                               52   2e-06

>AtCh025 [J] KOG3301 Ribosomal protein S4
          Length = 201

 Score = 52.0 bits (123), Expect = 2e-06
 Identities = 37/118 (31%), Positives = 59/118 (49%), Gaps = 16/118 (13%)

Query: 39  KTLYQQKWTSKQETRAYHGEHLTESRWQSVFEPQLNSVAQLDASLRGGDIEPTPILLQTY 98
           K+ Y+ +   KQ+ R ++G          + E QL    ++    +G   +   +LLQ  
Sbjct: 41  KSQYRIRLEEKQKLRFHYG----------LTEHQLLKYVRIAGKAKGSTGQ---VLLQ-- 85

Query: 99  AVLEKRLDFALFRAMFASSVRQARQFILHGNVHVNGVKITSPGYALKAGDVFNVRPEK 156
            +LE RLD  LFR   A ++ QARQ + HG++ VNG  +  P Y  K  D+  V+ E+
Sbjct: 86  -LLEMRLDNILFRLGMALTIPQARQLVNHGHILVNGRIVDIPSYRCKPRDIITVKDEQ 142


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.318    0.134    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,220,044
Number of Sequences: 60738
Number of extensions: 1287454
Number of successful extensions: 3531
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3531
Number of HSP's gapped (non-prelim): 1
length of query: 482
length of database: 30,389,216
effective HSP length: 110
effective length of query: 372
effective length of database: 23,708,036
effective search space: 8819389392
effective search space used: 8819389392
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)