ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactI3147    suspect: LH   C     KOG0538  Energy production and conversion                               Glycolate oxidase

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactI3147 1054345  1054755 137  
         (137 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YML054c_2 [C] KOG0538 Glycolate oxidase                                68   3e-12

>YML054c_2 [C] KOG0538 Glycolate oxidase
          Length = 390

 Score = 68.2 bits (165), Expect = 3e-12
 Identities = 51/154 (33%), Positives = 72/154 (46%), Gaps = 29/154 (18%)

Query: 2   QMVPKQNSYSHEEFFPHVPDD-QNHWLQYHFDTQEEL-DNLENWVKKAGTMPSVKGLFFN 59
           QM+    S S EE     P D Q  W Q + ++  ++ D+L   V+K G    VK LF  
Sbjct: 104 QMISTLASCSPEEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLG----VKALFVT 159

Query: 60  VDLNDIGNREKDSRQR-----------------ASQAGSEYLNEMTDNKFGTHPKITWKT 102
           VD   +G REKD + +                  SQ  S  L++  D      P +TWK 
Sbjct: 160 VDAPSLGQREKDMKLKFSNTKAGPKAMKKTNVEESQGASRALSKFID------PSLTWKD 213

Query: 103 IDRVMQNTALPIGLKGVQRGEDVVLAVGLDIHHV 136
           I+ + + T LPI +KGVQR EDV+ A  + +  V
Sbjct: 214 IEELKKKTKLPIVIKGVQRTEDVIKAAEIGVSGV 247


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.317    0.134    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,078,420
Number of Sequences: 60738
Number of extensions: 372555
Number of successful extensions: 887
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 886
Number of HSP's gapped (non-prelim): 1
length of query: 137
length of database: 30,389,216
effective HSP length: 95
effective length of query: 42
effective length of database: 24,619,106
effective search space: 1034002452
effective search space used: 1034002452
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)