ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII0131 suspect: Pn OJ KOG2590 Posttranslational modification, protein turnover, chaperones RNA-binding protein LARP/SRO9 and related La domain proteins
r_klactII0131 suspect: Pn OJ KOG2590 Translation, ribosomal structure and biogenesis RNA-binding protein LARP/SRO9 and related La domain proteins
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII0131 39267 39890 208
(208 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
Hs22049862 [OJ] KOG2590 RNA-binding protein LARP/SRO9 and relate... 54 2e-07
CE28950 [OJ] KOG2590 RNA-binding protein LARP/SRO9 and related L... 52 4e-07
SPAC1527.03 [OJ] KOG2590 RNA-binding protein LARP/SRO9 and relat... 50 2e-06
YCL037c [OJ] KOG2590 RNA-binding protein LARP/SRO9 and related L... 49 5e-06
Hs8922390 [OJ] KOG2590 RNA-binding protein LARP/SRO9 and related... 49 5e-06
7301667 [OJ] KOG2590 RNA-binding protein LARP/SRO9 and related L... 48 8e-06
>Hs22049862 [OJ] KOG2590 RNA-binding protein LARP/SRO9 and related La domain
proteins
Length = 891
Score = 53.5 bits (127), Expect = 2e-07
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 9/86 (10%)
Query: 120 VNKQILFYFSANNLLRDIYLRSLMSKDGYLSISIFSEFPRIKTLLPKLALVEQRTKVLKN 179
+ +QI +YFS +NL RD +LR M DG+L I++ + F R++ L ++L+
Sbjct: 202 IKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLI--------- 252
Query: 180 AFRLSEPDIFEISGSRVRLRDSWQRW 205
L + + EI +VR R+ ++W
Sbjct: 253 FAALKDSKVVEIVDEKVRRREEPEKW 278
>CE28950 [OJ] KOG2590 RNA-binding protein LARP/SRO9 and related La domain
proteins
Length = 1109
Score = 52.4 bits (124), Expect = 4e-07
Identities = 23/58 (39%), Positives = 37/58 (63%)
Query: 118 EDVNKQILFYFSANNLLRDIYLRSLMSKDGYLSISIFSEFPRIKTLLPKLALVEQRTK 175
E V KQI +YFS NL +D +LR M +GYL +++ + FPR+++L +L+ + K
Sbjct: 522 EYVRKQIEYYFSEENLQKDFFLRRKMGPEGYLPVALIASFPRVRSLTEDYSLILEALK 579
>SPAC1527.03 [OJ] KOG2590 RNA-binding protein LARP/SRO9 and related La domain
proteins
Length = 475
Score = 50.1 bits (118), Expect = 2e-06
Identities = 27/91 (29%), Positives = 47/91 (50%), Gaps = 8/91 (8%)
Query: 120 VNKQILFYFSANNLLRDIYLRSLMSKDGYLSISIFSEFPRIKTLLPKLALVEQRTK---V 176
+ Q+ +YFS NL +D++LR M +GY+ ++ + F RIK+ L L+ K +
Sbjct: 329 LTSQLEYYFSIENLCKDMFLRKHMDDEGYVPLAFLASFNRIKSFSTDLNLLHAACKASDI 388
Query: 177 LKNAFRLSEPDIFEISGSRVRLRDSWQRWIV 207
+ A L P +VR +++W WI+
Sbjct: 389 IDVAIDLQSP-----MSIKVRRKETWSPWIL 414
>YCL037c [OJ] KOG2590 RNA-binding protein LARP/SRO9 and related La domain
proteins
Length = 466
Score = 48.9 bits (115), Expect = 5e-06
Identities = 22/52 (42%), Positives = 35/52 (67%)
Query: 109 PLAGIVKEIEDVNKQILFYFSANNLLRDIYLRSLMSKDGYLSISIFSEFPRI 160
P+ ++ I ++ +QI +YFS NL D YLRS +SKDG+ +S+ S+F R+
Sbjct: 286 PVQPVLMAINNIARQIEYYFSEENLTVDNYLRSKLSKDGFAPLSLISKFYRV 337
>Hs8922390 [OJ] KOG2590 RNA-binding protein LARP/SRO9 and related La domain
proteins
Length = 328
Score = 48.9 bits (115), Expect = 5e-06
Identities = 23/58 (39%), Positives = 35/58 (59%)
Query: 118 EDVNKQILFYFSANNLLRDIYLRSLMSKDGYLSISIFSEFPRIKTLLPKLALVEQRTK 175
E + +QI +YFS NL RD +LR M + G+L IS+ + F R++ L L L+ + K
Sbjct: 23 EYIKRQIEYYFSVENLERDFFLRGKMDEQGFLPISLIAGFQRVQALTTNLNLILEALK 80
>7301667 [OJ] KOG2590 RNA-binding protein LARP/SRO9 and related La domain
proteins
Length = 1184
Score = 48.1 bits (113), Expect = 8e-06
Identities = 28/89 (31%), Positives = 49/89 (54%), Gaps = 10/89 (11%)
Query: 118 EDVNKQILFYFSANNLLRDIYLRSLMSKDGYLSISIFSEFPRIKTLLPKLALVEQRTKVL 177
E + KQ+ +YFS +NL D +LR M +GY+ +++ + F R+ L +A V+
Sbjct: 475 EAIKKQVEYYFSVDNLTGDFFLRRKMDPEGYIPVTLIASFHRVLALTTDVA-------VI 527
Query: 178 KNAFRLSEP-DIFEISGSRVRLRDSWQRW 205
NA + S+ ++FE G +VR + + W
Sbjct: 528 VNAIKESDKLELFE--GYKVRTKTTPTTW 554
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.321 0.140 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,327,609
Number of Sequences: 60738
Number of extensions: 490443
Number of successful extensions: 1123
Number of sequences better than 1.0e-05: 6
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1118
Number of HSP's gapped (non-prelim): 7
length of query: 208
length of database: 30,389,216
effective HSP length: 102
effective length of query: 106
effective length of database: 24,193,940
effective search space: 2564557640
effective search space used: 2564557640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)