ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII0162 good K KOG3168 Transcription U1 snRNP component
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII0162 49098 48526 -191
(191 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YER029c [K] KOG3168 U1 snRNP component 130 1e-30
SPAC26A3.08 [K] KOG3168 U1 snRNP component 82 4e-16
At5g44500 [K] KOG3168 U1 snRNP component 82 4e-16
At4g20440 [K] KOG3168 U1 snRNP component 79 3e-15
Hs4507135 [K] KOG3168 U1 snRNP component 70 2e-12
Hs4507125 [K] KOG3168 U1 snRNP component 69 3e-12
7297695 [K] KOG3168 U1 snRNP component 69 5e-12
CE14704 [K] KOG3168 U1 snRNP component 66 3e-11
>YER029c [K] KOG3168 U1 snRNP component
Length = 196
Score = 130 bits (326), Expect = 1e-30
Identities = 77/197 (39%), Positives = 110/197 (55%), Gaps = 8/197 (4%)
Query: 1 MSQVEVKKKETKLSDLIDYRIRVATHDGRVYIGQLMAFDAYMNLVMGDCVEERMPHKQII 60
MS+++V ++L++LIDY++RV T DGRVYIGQLMAFD +MNLV+ +C+EER+P Q+
Sbjct: 1 MSKIQVAHS-SRLANLIDYKLRVLTQDGRVYIGQLMAFDKHMNLVLNECIEERVPKTQLD 59
Query: 61 EV---LKSGGNLSSNVQVERRTFGLIILRGEHVLSTSVESPPQLSKKERIEVQXXXXXXX 117
++ S + N++VE+R GL ILRGE +LST VE P LSKKER+
Sbjct: 60 KLRPRKDSKDGTTLNIKVEKRVLGLTILRGEQILSTVVEDKPLLSKKERLVRDKKEKKQA 119
Query: 118 XXXXXXRQGKTSNKMXXXXXXXXXXXXXXXXXXRVTKPS---HKPINTNSGA-PSRFNSN 173
R+ K + +PS + N N GA SRFN+
Sbjct: 120 QKQTKLRKEKEKKPGKIAKPNTANAKHTSSNSREIAQPSSSRYNGGNDNIGANRSRFNNE 179
Query: 174 SQVRPSRFQAPPGFKKR 190
+ + +FQ PPGFK++
Sbjct: 180 APPQTRKFQPPPGFKRK 196
>SPAC26A3.08 [K] KOG3168 U1 snRNP component
Length = 147
Score = 82.0 bits (201), Expect = 4e-16
Identities = 41/96 (42%), Positives = 60/96 (61%), Gaps = 8/96 (8%)
Query: 11 TKLSDLIDYRIRVATHDGRVYIGQLMAFDAYMNLVMGDCVEERMPHKQIIEVLKSGGNLS 70
TK+ L+++ + V T DGR ++GQL+AFD +MNLV+ DC E R KQ + S
Sbjct: 4 TKMVSLLNHSLNVTTKDGRTFVGQLLAFDGFMNLVLSDCQEYRHIKKQNVP--------S 55
Query: 71 SNVQVERRTFGLIILRGEHVLSTSVESPPQLSKKER 106
++V E+R GL+ILRGE ++S SV+ PP + R
Sbjct: 56 NSVYEEKRMLGLVILRGEFIVSLSVQGPPPMDPSMR 91
>At5g44500 [K] KOG3168 U1 snRNP component
Length = 254
Score = 82.0 bits (201), Expect = 4e-16
Identities = 44/92 (47%), Positives = 60/92 (64%), Gaps = 8/92 (8%)
Query: 9 KETKLSDLIDYRIRVATHDGRVYIGQLMAFDAYMNLVMGDCVEERMPHKQIIEVLKSGGN 68
K +K+ I+YR+RV DGR IG+ MAFD +MNLV+GDC E R ++ + GN
Sbjct: 5 KSSKMLQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFR-------KLPPAKGN 57
Query: 69 LSSNVQ-VERRTFGLIILRGEHVLSTSVESPP 99
+N + ERRT GL++LRGE V+S +VE PP
Sbjct: 58 KKTNEEREERRTLGLVLLRGEEVISMTVEGPP 89
>At4g20440 [K] KOG3168 U1 snRNP component
Length = 257
Score = 79.3 bits (194), Expect = 3e-15
Identities = 40/91 (43%), Positives = 58/91 (62%), Gaps = 7/91 (7%)
Query: 9 KETKLSDLIDYRIRVATHDGRVYIGQLMAFDAYMNLVMGDCVEERMPHKQIIEVLKSGGN 68
K +K+ I+YR+RV DGR +G+ MAFD +MNLV+GDC E R ++ + G
Sbjct: 5 KSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFR-------KLPPAKGK 57
Query: 69 LSSNVQVERRTFGLIILRGEHVLSTSVESPP 99
+ + +RRT GL++LRGE V+S +VE PP
Sbjct: 58 KINEEREDRRTLGLVLLRGEEVISMTVEGPP 88
>Hs4507135 [K] KOG3168 U1 snRNP component
Length = 240
Score = 69.7 bits (169), Expect = 2e-12
Identities = 36/91 (39%), Positives = 53/91 (57%), Gaps = 9/91 (9%)
Query: 9 KETKLSDLIDYRIRVATHDGRVYIGQLMAFDAYMNLVMGDCVEERMPHKQIIEVLKSGGN 68
K +K+ IDYR+R DGR++IG AFD +MNL++ DC E R + N
Sbjct: 5 KSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPK---------N 55
Query: 69 LSSNVQVERRTFGLIILRGEHVLSTSVESPP 99
+ E+R GL++LRGE+++S +VE PP
Sbjct: 56 AKQPEREEKRVLGLVLLRGENLVSMTVEGPP 86
>Hs4507125 [K] KOG3168 U1 snRNP component
Length = 231
Score = 69.3 bits (168), Expect = 3e-12
Identities = 36/91 (39%), Positives = 53/91 (57%), Gaps = 9/91 (9%)
Query: 9 KETKLSDLIDYRIRVATHDGRVYIGQLMAFDAYMNLVMGDCVEERMPHKQIIEVLKSGGN 68
K +K+ IDYR+R DGR++IG AFD +MNL++ DC E R + N
Sbjct: 5 KSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPK---------N 55
Query: 69 LSSNVQVERRTFGLIILRGEHVLSTSVESPP 99
+ E+R GL++LRGE+++S +VE PP
Sbjct: 56 SKQAEREEKRVLGLVLLRGENLVSMTVEGPP 86
>7297695 [K] KOG3168 U1 snRNP component
Length = 199
Score = 68.6 bits (166), Expect = 5e-12
Identities = 33/91 (36%), Positives = 51/91 (55%), Gaps = 9/91 (9%)
Query: 9 KETKLSDLIDYRIRVATHDGRVYIGQLMAFDAYMNLVMGDCVEERMPHKQIIEVLKSGGN 68
K K+ ++YR+R+ D R +IG AFD +MNL++GDC E R + N
Sbjct: 5 KNNKMIQHLNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIRSK---------N 55
Query: 69 LSSNVQVERRTFGLIILRGEHVLSTSVESPP 99
+ E+R G ++LRGE+++S +VE PP
Sbjct: 56 SKVPEREEKRVLGFVLLRGENIVSLTVEGPP 86
>CE14704 [K] KOG3168 U1 snRNP component
Length = 160
Score = 65.9 bits (159), Expect = 3e-11
Identities = 33/91 (36%), Positives = 55/91 (60%), Gaps = 9/91 (9%)
Query: 9 KETKLSDLIDYRIRVATHDGRVYIGQLMAFDAYMNLVMGDCVEERMPHKQIIEVLKSGGN 68
K K+ ++YR+++ DGR +IG AFD +MN+++ +C E H+QI K+G
Sbjct: 5 KNNKMMAHLNYRMKIILQDGRTFIGFFKAFDKHMNILLAECEE----HRQIKP--KAGKK 58
Query: 69 LSSNVQVERRTFGLIILRGEHVLSTSVESPP 99
E+R GL+++RGEH++S +V+ PP
Sbjct: 59 TDGE---EKRILGLVLVRGEHIVSMTVDGPP 86
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.315 0.131 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,256,286
Number of Sequences: 60738
Number of extensions: 306663
Number of successful extensions: 795
Number of sequences better than 1.0e-05: 8
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 779
Number of HSP's gapped (non-prelim): 8
length of query: 191
length of database: 30,389,216
effective HSP length: 100
effective length of query: 91
effective length of database: 24,315,416
effective search space: 2212702856
effective search space used: 2212702856
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)