ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII0223 good K KOG1999 Transcription RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII0223 71352 68245 -1036
(1036 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YML010w [K] KOG1999 RNA polymerase II transcription elongation f... 1099 0.0
SPAC23C4.19 [K] KOG1999 RNA polymerase II transcription elongati... 423 e-118
Hs20149524 [K] KOG1999 RNA polymerase II transcription elongatio... 245 3e-64
7302477 [K] KOG1999 RNA polymerase II transcription elongation f... 227 8e-59
CE06145 [K] KOG1999 RNA polymerase II transcription elongation f... 211 5e-54
At2g34210 [K] KOG1999 RNA polymerase II transcription elongation... 179 2e-44
At4g08350 [K] KOG1999 RNA polymerase II transcription elongation... 164 7e-40
At5g04290 [K] KOG1999 RNA polymerase II transcription elongation... 88 6e-17
ECU11g1930 [K] KOG1999 RNA polymerase II transcription elongatio... 74 2e-12
>YML010w [K] KOG1999 RNA polymerase II transcription elongation factor
DSIF/SUPT5H/SPT5
Length = 1063
Score = 1099 bits (2842), Expect = 0.0
Identities = 573/929 (61%), Positives = 676/929 (72%), Gaps = 52/929 (5%)
Query: 127 ESYRKKQRRERNRFLXXXXXXXXXXXXXXXXXXXXLVREGFITXXXXXXXXXXX--XXXX 184
E+ K++R+ERNRFL LVREGFIT
Sbjct: 167 EAPTKRRRQERNRFLDIEAEVSDDEDEDEDEEDSELVREGFITHGDDEDDEASAPGARRD 226
Query: 185 XXLHRELDQNLQKTADEDMHKIAEDFKKRYGRDSSKDYRVQTQGGYVPQRFMLPSVDTAI 244
LHR+LDQ+L KT++ED ++A++ ++RYGR SSK YR Q GYVPQRF+LPSVDTA
Sbjct: 227 DRLHRQLDQDLNKTSEEDAQRLAKELRERYGRSSSKQYRAAAQDGYVPQRFLLPSVDTAT 286
Query: 245 IWSVRCRPGKEKELVRKLLNKKFNLDKSMGSKKLKILSIFQRDNYTGRIYIEAPKQSVIE 304
IW VRCRPGKEKEL+RKLL KKFNLD++MG KKLKILSIFQRDNYTGRIYIEAPKQSVIE
Sbjct: 287 IWGVRCRPGKEKELIRKLLKKKFNLDRAMGKKKLKILSIFQRDNYTGRIYIEAPKQSVIE 346
Query: 305 KFVNGVPDVYSNQKXXXXXXXXXXXXKPTKSDEVRLDVGSYVRIKRGIYKNDLAVIDQIS 364
KF NGVPD+Y +QK KP KSD+V L+ GSYVRIKRGIYK DLA++DQIS
Sbjct: 347 KFCNGVPDIYISQKLLIPVQELPLLLKPNKSDDVALEEGSYVRIKRGIYKGDLAMVDQIS 406
Query: 365 QNNLEALLKIVPRLDYGKNDEIDPDTNQRKAKRATFASRPPPQLFNPTMALRLDQANLFK 424
+NNLE +LKIVPRLDYGK DEIDP T QRK++R TFA R PPQLFNPTMALRLDQANL+K
Sbjct: 407 ENNLEVMLKIVPRLDYGKFDEIDPTTQQRKSRRPTFAHRAPPQLFNPTMALRLDQANLYK 466
Query: 425 RDDRHFTYRKEDYVDGYLFKSFKIQYLDTKNIQPTVEELSRFGSKEGDVDLAAIAQTMKK 484
RDDRHFTY+ EDY+DGYL+KSF+IQ+++TKNIQPTVEEL+RFGSKEG VDL +++Q++KK
Sbjct: 467 RDDRHFTYKNEDYIDGYLYKSFRIQHVETKNIQPTVEELARFGSKEGAVDLTSVSQSIKK 526
Query: 485 AQASKAMFQPGDRVEVLTGEQRGSRGVVTRSSKDVISVKLSGFSDKSLEFPIASLRKIFE 544
AQA+K FQPGDR+EVL GEQRGS+G+VTR++KD+ ++KL+GF+ LEFPI++LRKIFE
Sbjct: 527 AQAAKVTFQPGDRIEVLNGEQRGSKGIVTRTTKDIATIKLNGFT-TPLEFPISTLRKIFE 585
Query: 545 LGDHVTVIAGEHEGNAGLVLLVQNGQVTFVSDQTRENLTISANNLSKSMDSTPTSSEYAL 604
GDHVTVI GEH+G+AGLVL+V+ GQVTF+S QT +TI+ANNLSKS+D+T TSSEYAL
Sbjct: 586 PGDHVTVINGEHQGDAGLVLMVEQGQVTFMSTQTSREVTITANNLSKSIDTTATSSEYAL 645
Query: 605 HDIVELSAKNVACVIQAGHDIFKIIDDSGKVATVTKGSILAKINVARAKVAAVDGNGREI 664
HDIVELSAKNVAC+IQAGHDIFK+ID++GKV+T+TKGSIL+KIN ARA+V++VD NG EI
Sbjct: 646 HDIVELSAKNVACIIQAGHDIFKVIDETGKVSTITKGSILSKINTARARVSSVDANGNEI 705
Query: 665 KIGDVVREKIGSRREGQVLYVQNQHIFIRSKTITENAGVFVVNPMNVEAVASKENLMSSA 724
KIGD + EK+GSRREGQVLY+Q Q IF+ SK I ENAGVFVVNP NVEAVASK+N++S+
Sbjct: 706 KIGDTIVEKVGSRREGQVLYIQTQQIFVVSKKIVENAGVFVVNPSNVEAVASKDNMLSNK 765
Query: 725 LDLSKINPNIASKMGPP--QTTQQ--TRLVGRDVALNKTVRIRSAGYKGQLGIVKDVNGD 780
+DLSK+NP I SKMGPP +T QQ GR+VAL KTVRIRSAGYKGQLGIVKDVNGD
Sbjct: 766 MDLSKMNPEIISKMGPPSSKTFQQPIQSRGGREVALGKTVRIRSAGYKGQLGIVKDVNGD 825
Query: 781 KATIELHSKNKHITIDKRKLTYFSHEGGEGITYDELVSRRGRTPHTRLGPSYVSAPRHMA 840
KAT+ELHSKNKHITIDK KLTY++ EGGEGITYDELV+RRGR P R+GPSYVSAPR+MA
Sbjct: 826 KATVELHSKNKHITIDKHKLTYYNREGGEGITYDELVNRRGRVPQARMGPSYVSAPRNMA 885
Query: 841 AGG--AVATNTPQQLPGGMTPGWNAFDGGKTPAV-------GQNXXXXXXXXXXXXXXXX 891
GG A A T L GGMTPGW++FDGGKTPAV G
Sbjct: 886 TGGIAAGAAATSSGLSGGMTPGWSSFDGGKTPAVNAHGGSGGGGVSSWGGASTWGGQGNG 945
Query: 892 XXXXXXXXXXXXXXXXXXXQGATSTWGGASTWGNKXXXXXXXXXXXXXXXXXXXXXXXXN 951
GATSTWGGAS WGNK +
Sbjct: 946 GASAWGGAGGGASAWGGQGTGATSTWGGASAWGNK-----------------------SS 982
Query: 952 KSSYXXXXXXXXXXXXVSAWGGSGNKSQRSKNTGGSSTWG--NNQSQHNSGERSAWGNAS 1009
+S WGG+G++S GG+STWG NN G SAWGN
Sbjct: 983 WGGASTWASGGESNGAMSTWGGTGDRSA----YGGASTWGGNNNNKSTRDGGASAWGN-- 1036
Query: 1010 QHNNSGNRSAWGNQDAR---GGGSTWGGN 1035
+ GNRSAW NQ + GG STWGG+
Sbjct: 1037 --QDDGNRSAWNNQGNKSNYGGNSTWGGH 1063
>SPAC23C4.19 [K] KOG1999 RNA polymerase II transcription elongation factor
DSIF/SUPT5H/SPT5
Length = 990
Score = 423 bits (1087), Expect = e-118
Identities = 259/689 (37%), Positives = 381/689 (54%), Gaps = 35/689 (5%)
Query: 188 HRELDQNLQKTADEDMHKIAEDFKKRYGRDSSKDYRVQTQGGYVPQRFMLPSVDTAIIWS 247
HRELD+ Q+ D ++AE+++++YGR + V VPQR +LPSV+ IW+
Sbjct: 189 HRELDRQRQELQSVDAERLAEEYREKYGRSQT----VVGDTSNVPQRLLLPSVNDPNIWA 244
Query: 248 VRCRPGKEKELVRKLLNKKFNLDKSMGSKKLKILSIFQRDNYTGRIYIEAPKQSVIEKFV 307
VRC+ GKEK++V ++ K +L + S L+I+S FQRD+ G IY+EA KQS + +
Sbjct: 245 VRCKIGKEKDIVFTIMRKAMDLQYT--SSPLEIISAFQRDSLVGYIYVEARKQSHVLDAL 302
Query: 308 NGVPDVYSNQKXXXXXXXXXXXXKPTKSDEVRLDVGSYVRIKRGIYKNDLAVIDQISQNN 367
NGV +VY+N K K V L G+YVRI+RG Y DLA +D +S+N
Sbjct: 303 NGVLNVYTNNMILVPIKEMPDLLKVQKQ-VVELLPGAYVRIRRGKYAGDLAQVDNLSENG 361
Query: 368 LEALLKIVPRLDYGKNDEIDPDTNQRKAKRATFASRPPPQLFNPTMALRLDQANLFKRDD 427
L A ++IVPR+DY KR A+RP +LFN + A + + + KR
Sbjct: 362 LTARVRIVPRIDYSDG-----------LKRKNSATRPQARLFNESEAFKSNPSKFSKRGP 410
Query: 428 RHFTYRKEDYVDGYLFKSFKIQYLDTKNIQPTVEELSRFGSKEGDVDLAAIAQTMKKAQA 487
R F + E++ DG+L K +I L T+ + PT++E+S+F D+DL+++A ++K A
Sbjct: 411 RLFLFNNEEFEDGFLVKDIRISSLITEGVNPTLDEVSKFNPNNEDLDLSSLALSVKGGHA 470
Query: 488 SKAMFQPGDRVEVLTGEQRGSRGVVTRSSKDVISVKLSGFSDKSLEFPIASLRKIFELGD 547
FQPGD VEV GEQ G GVV VI++ S L+ P LRK F GD
Sbjct: 471 E---FQPGDHVEVYVGEQTGVSGVVENVRGSVITMVSS--DGLRLDVPSRGLRKRFRHGD 525
Query: 548 HVTVIAGEHEGNAGLVLLVQNGQVTFVSDQTRENLTISANNLSKSMDSTPTSSEYALHDI 607
+V VIAG+++ + G+V+ + +VTF+SD LT+ + +L ++ + +S Y LHD+
Sbjct: 526 YVKVIAGKYKDDTGMVVRISKDEVTFLSDTLMTELTVFSRDLGEASSAQAVNSAYELHDL 585
Query: 608 VELSAKNVACVIQAGHDIFKIIDDSGKVATVTKGSILAKINVARAKVAAVDGNGREIKIG 667
V+L VAC+ D +K+ID +G V TV I + + R A D NG EI+IG
Sbjct: 586 VQLDVNTVACIFSVDRDTYKVIDQNGGVRTVLASQITMRHSNRRG--VATDRNGAEIRIG 643
Query: 668 DVVREKIGSRREGQVLYVQNQHIFIRSKTITENAGVFVVNPMNVEAVASKENLMSSALDL 727
D V+E G ++G +L++ +F+ ++ I EN GVF NV +A+K +S+ DL
Sbjct: 644 DKVKEVGGEGKQGTILHIYRAFVFLHNRDIAENNGVFSARSRNVATIAAKGARISA--DL 701
Query: 728 SKINPNIASKMGPPQTTQQTRLVGRDVALNKTVRIRSAGYKGQLGIVKDVNGDKATIELH 787
+K+NP +++ P R +GRD A+ TVRIR KG LG++KD A +ELH
Sbjct: 702 TKMNPALSNGPALPPVANLKRTIGRDKAIGATVRIRRGPMKGLLGVIKDTTDANARVELH 761
Query: 788 SKNKHITIDKRKLTYFSHEGGEGITYDELVSR-RGRTP---HTRLGPSYVS-APRHMAAG 842
+ NK +TI K L Y + + GE I+Y E + R RG P T GP+ + A
Sbjct: 762 TGNKMVTIPKENLLY-TTKTGELISYTEFIERSRGIRPGSISTADGPNVPNWAQGARTPA 820
Query: 843 GAVATNTPQQLPGGMTPGWNAFDGGKTPA 871
A + TP G TP WN+ G KTPA
Sbjct: 821 VANGSRTPAWNTGSRTPAWNS--GSKTPA 847
>Hs20149524 [K] KOG1999 RNA polymerase II transcription elongation factor
DSIF/SUPT5H/SPT5
Length = 1087
Score = 245 bits (625), Expect = 3e-64
Identities = 213/725 (29%), Positives = 344/725 (47%), Gaps = 80/725 (11%)
Query: 193 QNLQKTADEDMHKIAEDFKKRYGRDSSKDYRVQTQGGY------VPQRFMLPSVDTAIIW 246
QNL + D+ ++ E + K+Y + S + GG + Q+ +LP V +W
Sbjct: 126 QNLWR--DQREEELGEYYMKKYAKSSVGE---TVYGGSDELSDDITQQQLLPGVKDPNLW 180
Query: 247 SVRCRPGKEK----ELVRKLLNKKFNLDKSMGSKKLKILSIFQRDNYTGRIYIEAPKQSV 302
+V+C+ G+E+ L+RK + +F L+I S+ ++ G IY+EA KQ+
Sbjct: 181 TVKCKIGEERATAISLMRKFIAYQFT------DTPLQIKSVVAPEHVKGYIYVEAYKQTH 234
Query: 303 IEKFVNGVPDV---YSNQKXXXXXXXXXXXXKPTKSDEVRLDVGSYVRIKRGIYKNDLAV 359
+++ + GV ++ Y NQ+ + L S+VR+KRGIYK+D+A
Sbjct: 235 VKQAIEGVGNLRLGYWNQQMVPIKEMTDVLK--VVKEVANLKPKSWVRLKRGIYKDDIAQ 292
Query: 360 IDQISQNNLEALLKIVPRLDYGKNDEIDPDTNQRK--AKRATFASRPPPQLFNPTMALRL 417
+D + + LK++PR+DY D I + + AKR F RPP +LF+ L
Sbjct: 293 VDYVEPSQNTISLKMIPRIDY---DRIKARMSLKDWFAKRKKF-KRPPQRLFDAEKIRSL 348
Query: 418 --DQANLFKRDDRHFTYRKEDYV-DGYLFKSFKIQYLDTKNIQPTVEELSRFGSKEGDVD 474
D A+ D + Y G+LFKSF + + T+ ++PT+ EL +F + +D
Sbjct: 349 GGDVAS----DGDFLIFEGNRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGID 404
Query: 475 LAAIAQTMKKAQASKAMFQPGDRVEVLTGEQRGSRGVVTR--SSKDVISVKLSGFSDKSL 532
L + ++ K + FQPGD VEV GE +G + +K I K D L
Sbjct: 405 LEVVTESTGKEREHN--FQPGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDM-L 461
Query: 533 EFPIASLRKIFELGDHVTVIAGEHEGNAGLVLLVQNGQVTFVSDQTRENLTISANNL--- 589
EFP LRK F++GDHV VIAG EG+ GL++ V+ V SD T L + +L
Sbjct: 462 EFPAQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLC 521
Query: 590 SKSMDSTPTSSEYALHDIVELSAKNVACVIQAGHDIFKIIDDSGKVATVTKGSILAKINV 649
S++ ++ ++V+L + V +++ + F++++ GKV TV ++ K +
Sbjct: 522 SETASGVDVGGQHEWGELVQLDPQTVGVIVRLERETFQVLNMYGKVVTVRHQAVTRKKDN 581
Query: 650 ARAKVAAVDGNGREIKIGDVVREKIG--SRREGQVLYVQNQHIFIRSKTITENAGVFVVN 707
A A+D I + D+V+ G S REG++ ++ F+ K + EN G+FV
Sbjct: 582 RFA--VALDSEQNNIHVKDIVKVIDGPHSGREGEIRHLFRSFAFLHCKKLVENGGMFVCK 639
Query: 708 PMN-VEAVASKENLMSSAL--DLSKINPNIASKMGPPQTTQQ-------------TRLVG 751
+ V A SK +++ + ++P I+S M P Q+ +R G
Sbjct: 640 TRHLVLAGGSKPRDVTNFTVGGFAPMSPRISSPMHPSAGGQRGGFGSPGGGSGGMSRGRG 699
Query: 752 R--DVALNKTVRIRSAGYKGQLGIVKDVNGDKATIELHSKNKHITIDKRKLTYFSHEGGE 809
R + + +TVRI YKG +G+VKD A +ELHS + I++D+++LT
Sbjct: 700 RRDNELIGQTVRISQGPYKGYIGVVKDATESTARVELHSTCQTISVDRQRLTTVGSRRPG 759
Query: 810 GITYDELVSRRGRTP-HTRLGPSYVSAPRHMAAGGAVATNTPQQLP--GGMTPGWNAFDG 866
G+T S GRTP + P Y S R G + P G TP DG
Sbjct: 760 GMT-----STYGRTPMYGSQTPMYGSGSRTPMYGSQTPLQDGSRTPHYGSQTP---LHDG 811
Query: 867 GKTPA 871
+TPA
Sbjct: 812 SRTPA 816
>7302477 [K] KOG1999 RNA polymerase II transcription elongation factor
DSIF/SUPT5H/SPT5
Length = 1078
Score = 227 bits (578), Expect = 8e-59
Identities = 205/730 (28%), Positives = 326/730 (44%), Gaps = 73/730 (10%)
Query: 189 RELDQNLQKTADEDMHKIAEDFKKRYGRDSSKDYRVQTQGGY-----VPQRFMLPSVDTA 243
R NL T ED +I E +K+Y D S R GG + Q+ +LP +
Sbjct: 158 RRRGTNLWDTQKED--EIEEYLRKKYA-DESIAKRHFGDGGEEMSDEITQQTLLPGIKDP 214
Query: 244 IIWSVRCRPGKEKELVRKLLNKKFNLDKSMGSKKLKILSIFQRDNYTGRIYIEAPKQSVI 303
+W V+CR G+EK L+ K + L+I SI + G IY+EA KQ+ +
Sbjct: 215 NLWMVKCRIGEEKATALLLMRKYLTYLNT--DDPLQIKSIIAPEGVKGYIYLEAYKQTHV 272
Query: 304 EKFVNGVPDVYSNQ-KXXXXXXXXXXXXKPTKSDEVRLDVGSYVRIKRGIYKNDLAVIDQ 362
+ ++ V ++ + K ++V L V +VR+KRG+YK+D+A +D
Sbjct: 273 KTCIDNVGNLRMGKWKQEMVPIKEMTDVLKVVKEQVGLKVKQWVRLKRGLYKDDIAQVDY 332
Query: 363 ISQNNLEALLKIVPRLDYGK------NDEIDPDTNQRKAKRATFASRPPPQLFNPTMALR 416
+ + LK++PR+DY + + D ++RK KR RP + F+P A+R
Sbjct: 333 VDLAQNQVHLKLLPRIDYTRMRGALRTTATESDDSKRKKKR-----RPAAKPFDPE-AVR 386
Query: 417 LDQANLFKRDDRHFTYRKEDYVDGYLFKSFKIQYLDTKNIQPTVEELSRFGSKEGDVDLA 476
+ D G+L+K+F + + + ++PT+ EL RF +V+L
Sbjct: 387 AIGGEVHSDGDFLLFEGNRYSRKGFLYKNFTMSAILSDGVKPTLAELERFEESPEEVNLE 446
Query: 477 AIAQTMKKAQASKAMFQPGDRVEVLTGEQRGSRGVVTRSSKDVISV--KLSGFSDKSLEF 534
I T+K F GD VEV G+ + + +I+V K D L F
Sbjct: 447 -IMGTVKDDPTMAHSFSMGDNVEVCVGDLENLQAKIVAIDGTMITVMPKHQDLKDP-LIF 504
Query: 535 PIASLRKIFELGDHVTVIAGEHEGNAGLVLLVQNGQVTFVSDQTRENLTISANNLSKSMD 594
+ LRK F+ GDH V+AG +EG GL++ V+ +V VSD T L + +L D
Sbjct: 505 KASELRKYFKTGDHARVLAGRYEGETGLIIRVEPTRVVLVSDLTNHELEVLPRDLQLCSD 564
Query: 595 ---STPTSSEYALHDIVELSAKNVACVIQAGHDIFKIIDDSGKVATVTKGSILAKINVAR 651
++ D+V+L ++NV +++ + F ++ +GK K + L K R
Sbjct: 565 VATGVDCLGQFQWGDMVQLDSQNVGVIVRLERENFHVLGMNGK-CIECKPTALHKRKENR 623
Query: 652 AKVAAVDGNGREIKIGDVVREKIG--SRREGQVLYVQNQHIFIRSKTITENAGVFVVNPM 709
V A+D + +I+ DVV+ G + R G++ ++ F+ + TEN G+FV
Sbjct: 624 HTV-ALDADQNQIRRRDVVKVMEGPHAGRSGEIKHLYRSLAFLHCRMYTENGGIFVCKTR 682
Query: 710 NVEAVASKENLMSSA---LDLSKINPNIASKMGPPQTTQQT----------RLVGRDVAL 756
+++ + +S+A L ++P I S M P R+ L
Sbjct: 683 HLQLAGGSKTTVSNAGIVGGLGFMSPRIQSPMHPSGGRGARGGARGGRGGFRVTRDREIL 742
Query: 757 NKTVRIRSAGYKGQLGIVKDVNGDKATIELHSKNKHITIDKRKLTYFSHEGGEGITYDEL 816
KT++I YKG +GIVKD A +ELH+ + I++D+ + G EG
Sbjct: 743 GKTIKISGGPYKGAVGIVKDATESTARVELHTSCQTISVDRNHIAIVGVTGKEG-----S 797
Query: 817 VSRRGRTPHTRLGPSY-VSAPRHMAAGGAVATNTPQQLPGGMTPGWN------------A 863
VS GRTP P Y P + AAG + TP L G TP W+ +
Sbjct: 798 VSTYGRTPART--PGYGAQTPSYTAAG----SKTP--LVGSQTPNWDTDTRTPYGTMTPS 849
Query: 864 FDGGKTPAVG 873
DG TP G
Sbjct: 850 HDGSMTPRHG 859
>CE06145 [K] KOG1999 RNA polymerase II transcription elongation factor
DSIF/SUPT5H/SPT5
Length = 1208
Score = 211 bits (537), Expect = 5e-54
Identities = 199/738 (26%), Positives = 326/738 (43%), Gaps = 91/738 (12%)
Query: 196 QKTADEDMHKIAEDFKKRYGRDSSKDYRVQTQGGYVPQRFMLPSVDTAIIWSVRCRPGKE 255
Q ++++ K E+ K DS D + + LPS +W V+CR G+E
Sbjct: 137 QNMTEDEVQKYFENKYKGDKNDSQYDDEDSAMDD-ISKNSHLPSTKDPNLWIVKCRMGEE 195
Query: 256 KELVRKLLNKKFNLDKSMGSKKLKILSIFQRDNYTGRIYIEAPKQSVIEKFVNGVPDVYS 315
K + L+ K ++ + ++ +I S+ ++ G IYIEA KQS + + G +
Sbjct: 196 KLVAMHLMRKCLAVEHT--NEPFQIKSVVVKEGLKGMIYIEAFKQSHVMSAIEGFSALNQ 253
Query: 316 NQKXXXXXXXXXXXXKPTKSDEVRLDVGSYVRIKRGIYKNDLAVID--QISQNNLEALLK 373
+ K D +L +GSYVR+KR +YK+DLAV+D I+QN + LK
Sbjct: 254 FTITMVPIKDMVDVLRVVK-DIPQLKLGSYVRLKRTMYKDDLAVVDLVDIAQNRVN--LK 310
Query: 374 IVPRLDYGKND---EIDPDTNQRKAKRATFASRPPPQLFNPTMALRLDQANLFKRDDRHF 430
++PR+DY K D D N K KR RP P+LF+ + D
Sbjct: 311 LIPRVDYQKRRGAMRTDADKNY-KLKR-----RPMPKLFDQDTIKEV--GGEIVTDGDFL 362
Query: 431 TYRKEDYVDGYLFKSFKIQYLDTKNIQPTVEELSRFGSKEGDVDLAAIAQTMKKAQASKA 490
+ + G+L+K F I + ++PT+ EL +F D+ ++K +
Sbjct: 363 VFEGNHFRRGFLYKYFPINAIQADGVKPTLGELEKFQESSDDLKRELETASLKDTENP-- 420
Query: 491 MFQPGDRVEVLTGEQRGSRG-VVTRSSKDVISVKLSGFSDKSLEFPIASLRKIFELGDHV 549
F PGD VEV GE RG V+T V+ + +++ LRK F+ GDH
Sbjct: 421 -FVPGDIVEVKAGELVNLRGKVMTVDGTKVVMMPDQEDLKEAITLNAHELRKYFKEGDHA 479
Query: 550 TVIAGEHEGNAGLVLLVQNGQVTFVSDQTRENLTISANNLSKSMDST---PTSSEYALHD 606
VI+G +EG+ GL++ V++ +SD E L + +L D T + ++ HD
Sbjct: 480 KVISGRYEGHTGLIVRVKDSTAIVLSDLGMEELKVRVRDLQLCADVTTGVDSLGQFQYHD 539
Query: 607 IVELS-AKNVACVIQAGHDIFKIIDDSGKVATVTKGSILAKINVARAKVAAVDGNGREIK 665
+V+L NV +++ + ++++ G V + +I+AK +V AKV +D I+
Sbjct: 540 LVQLDHTGNVGVIVRLEKEHLEVLNMHGVVNRIKPQAIIAKKDVRFAKV--LDSQNNSIE 597
Query: 666 IGDVVREKIGSRRE---------GQVLYVQNQHIFIRSKTITENAGVFVVNPMNVEAVAS 716
D+V+ G + G+VLY +F+ S+ +T+N GV V P + +
Sbjct: 598 AKDLVKVIGGPNAKERETDEDPVGEVLYAFRGTVFVYSRKVTKNGGVLVCKPKQLILQGA 657
Query: 717 KENLMSSALD-LSKINPNIASK-----MGP--PQT------------------------- 743
K+ + + ++ NP + + M P PQ
Sbjct: 658 KKTTSTPMVSRMASPNPMASPRHSSGGMTPRSPQDGMSSRGSSGGQTPRQGGGGGRGGHF 717
Query: 744 -TQQTRLVGRDVAL-NKTVRIRSAGYKGQLGIVKDVNGDKATIELHSKNKHITIDKRKLT 801
T + V RD+ L K VRI KG GIV+D D +ELH++ + I++D+ ++
Sbjct: 718 GTANQQKVRRDLTLIGKNVRIIKGPMKGHFGIVRDATEDTVRVELHTQCRTISVDRARVM 777
Query: 802 YFSHEG-----GEGITYDELVSRRGRTPHTRLGPSYVSAPRHMAAGGAVATNTPQQLPGG 856
G G G ++ +TP G P + + TP + G
Sbjct: 778 VVGDTGITAGSGGGSSF----YSSSKTPMRDSG----KTPMYGSKTPMYGAQTP--MYGS 827
Query: 857 MTPGWNAFDGGKTPAVGQ 874
MTP A+DGG+TPA G+
Sbjct: 828 MTP---AYDGGRTPAYGE 842
>At2g34210 [K] KOG1999 RNA polymerase II transcription elongation factor
DSIF/SUPT5H/SPT5
Length = 990
Score = 179 bits (455), Expect = 2e-44
Identities = 180/701 (25%), Positives = 310/701 (43%), Gaps = 62/701 (8%)
Query: 196 QKTADEDMHKIAEDFKKRYGRDSSKDYRVQTQGGYVPQRFMLPSVDTAIIWSVRCRPGKE 255
++ DE + E +Y +D DY + V Q+ +LPSV +W V+C G+E
Sbjct: 126 EEDVDELEKRTLERLSTKYAKD---DYELDDVND-VDQQALLPSVRDPKLWLVKCAIGRE 181
Query: 256 KELVRKLLNKKFNLDKSMGSKKLKILSIFQRDNYTGRIYIEAPKQSVIEKFVNGVPDVYS 315
+E+ L+ K + + KI S D+ +YIEA ++ +++ + G+ ++Y+
Sbjct: 182 REVAVCLMQKIVDR-----GSEFKIRSAIALDHLQNYVYIEADMEAHVKEAIKGMRNIYA 236
Query: 316 NQKXXXXXXXXXXXXKPTKSDEVRLDVGSYVRIKRGIYKNDLAVIDQISQNNLEALLKIV 375
NQK +S + L S+VR+K GIYK DLA + + +K++
Sbjct: 237 NQKILLVPIKEMTAVLSVESKAIDLSRDSWVRMKLGIYKGDLAQVVDVDNVRKRVTVKLI 296
Query: 376 PRLD-YGKNDEIDPDTNQRKAKRATFASRPPPQLFNPTMALRLDQANLFKRDDRHFTYRK 434
PR+D ++++ N +K A PPP+ N A L +RD Y +
Sbjct: 297 PRIDLQALANKLEGTENVKKK-----AFAPPPRFMNIDEARELHIRVEHRRDPMTGDYFE 351
Query: 435 ED----YVDGYLFKSFKIQYLDTKNIQPTVEELSRFGSKEGDVDLAAIAQTMKKAQASKA 490
+ DG+L+K + + +N+ PT +EL RF + ++ + ++ A K
Sbjct: 352 NIGGMLFKDGFLYKKVSTKSIAAQNVTPTFDELERFKRPNENGEIDFVDESTLFANRKKG 411
Query: 491 MFQPGDRVEVLTGEQRGSRGVVTRSSKDVISVKLSGFSDKSLEFPIA----SLRKIFELG 546
F GD V V+ G+ + +G + + ++ + ++ K L PIA L K FE G
Sbjct: 412 HFMKGDAVIVIKGDLKNLKGWIEKVDEENVLIR---SEMKDLPNPIAVNGRELCKYFEPG 468
Query: 547 DHVTVIAGEHEGNAGLVLLVQNGQVTFVSDQTRENLTISANNLSKSMDST---PTSSEYA 603
+ V V++G HEG G+++ V + +SD T+E++ + A++++KS + T +Y
Sbjct: 469 NFVKVVSGIHEGGTGMIVKVDQHMLIILSDTTKEHICVFADHVAKSAEVTKGVTKIGDYE 528
Query: 604 LHDIVELSAKNVACVIQAGHD---IFKIIDDSGKVATVTKGSILAKINVARAKVAAVDGN 660
LHD+V LS + +++ + I K + DS +V+ V I KI K+ D
Sbjct: 529 LHDLVILSDFSFGVILKLDSEAIQILKGVPDSSEVSIVKASEIKYKI---WKKINVQDRY 585
Query: 661 GREIKIGDVVR--EKIGSRREGQVLYVQNQHIFIRSKTITENAGVFVVNPMNVEAVASKE 718
+ + DVVR E ++G V+ + +FI + E+ G F+ + V +
Sbjct: 586 KNVVAVKDVVRVIEGPSKGKQGPVVQIYKGVLFIHDRHNLEHTG-FICTRCS-SCVLAGG 643
Query: 719 NLMSSALDLSKINPNIASKMGPPQTTQQTRLVGR-----DVALNKTVRIRSAGYKGQLGI 773
N + AL + MG GR D + V+IR +KG G
Sbjct: 644 NFKTPALVPPSPRRFQRADMGYNPGAGGRHQGGRGRRGDDHLVGTYVKIRLGPFKGYSGR 703
Query: 774 VKDVNGDKATIELHSKNKHITIDKRKLTYFSHEGGEGITYDELVSRRGRTPHTRLGPSYV 833
+ +V +EL +K I KL +F + +T D +V+ TP +G
Sbjct: 704 LVEVKDKLVRVELEAK-----IVTGKL-HFERKAISDMT-DNVVA----TPQYNMGS--- 749
Query: 834 SAPRHMAAGGAVATNTPQQLPGGMTPGWNAFDGGKTPAVGQ 874
P H + TP + G TP DG +TP G+
Sbjct: 750 QTPMHPSRTPLHPCMTPMR-HSGATP---IHDGMRTPMRGR 786
>At4g08350 [K] KOG1999 RNA polymerase II transcription elongation factor
DSIF/SUPT5H/SPT5
Length = 1054
Score = 164 bits (415), Expect = 7e-40
Identities = 157/631 (24%), Positives = 273/631 (42%), Gaps = 76/631 (12%)
Query: 200 DEDMHKIAEDFKKRYGRDSSKDYRVQTQGGYVPQRFMLPSVDTAIIWSVRCRPGKEKELV 259
DED+ + ++R+ ++Y + V Q+ +LPSV +W V+C G+E+E+
Sbjct: 141 DEDVEDLERRIQERFSSRHHEEY--DEEATEVEQQALLPSVRDPKLWMVKCAIGREREVA 198
Query: 260 RKLLNKKFNLDKSMGSKKLKILSIFQRDNYTGRIYIEAPKQSVIEKFVNGVPDVYSNQKX 319
L+ K + L+I S+ D+ IY+EA K++ +++ + G+ ++Y+NQK
Sbjct: 199 VCLMQKFIDRGAD-----LQIRSVVALDHLKNFIYVEADKEAHVKEAIKGMRNIYANQKI 253
Query: 320 XXXXXXXXXXXKPTKSDEVRLDVGSYVRIKRGIYKNDLAVIDQISQNNLEALLKIVPRLD 379
+S + L ++VR+K G YK DLA + + +K++PR+D
Sbjct: 254 LLVPIREMTDVLSVESKAIDLSRDTWVRMKIGTYKGDLAKVVDVDNVRQRVTVKLIPRID 313
Query: 380 -YGKNDEIDPDTNQRKAKRATFASRPPPQLFNPTMALRLDQA-NLFKRDDRHFTYRKEDY 437
++D + +K+ F PPP+ N +D+A L R +R + DY
Sbjct: 314 LQALASKLD---GREVSKKKAFV--PPPRFMN------IDEARELHIRVERRRDHMTGDY 362
Query: 438 V---------DGYLFKSFKIQYLDTKNIQPTVEELSRFG--SKEGDVDLAAIAQTMKKAQ 486
DG+ +K ++ + +N+ PT +EL +F S+ G+ D ++ A
Sbjct: 363 FENIGGMLFKDGFHYKQVSLKSITVQNVTPTFDELEKFNKPSENGEGDFGGLSTLF--AN 420
Query: 487 ASKAMFQPGDRVEVLTGEQRGSRGVVTRSSKDVISVKLSGFSDKSLEFPIA----SLRKI 542
K F GD V V+ G+ + +G V + ++ + ++ K L P+A L K
Sbjct: 421 RKKGHFMKGDAVIVIKGDLKNLKGWVEKVDEENVLIR---SEVKGLPDPLAVNERELCKY 477
Query: 543 FELGDHVTVIAGEHEGNAGLVLLVQNGQVTFVSDQTRENLTISANNLSKSMDSTPTSSEY 602
FE G+HV V++G HEG G+V+ V V +D E+ S+ +Y
Sbjct: 478 FEPGNHVKVVSGTHEGATGMVVKVDQ-HVRVFADHVVES--------SEVTTGVTKIGDY 528
Query: 603 ALHDIVELSAKNVACVIQAGHDIFKI---IDDSGKVATVTKGSILAKINVARAKVAAVDG 659
LHD+V L + +I+ ++ F++ + D +VA V I K+ K+ D
Sbjct: 529 ELHDLVLLDNLSFGVIIRLENEAFQVLKGVPDRPEVALVKLREIKCKL---EKKINVQDR 585
Query: 660 NGREIKIGDVVR--EKIGSRREGQVLYVQNQHIFIRSKTITENAGVFVVNPMNVEAV-AS 716
I + D VR E ++G V ++ +FI + E+AG + V S
Sbjct: 586 YKNVIAVKDDVRVIEGPSKGKQGPVKHIYKGVLFIYDRHHLEHAGFICAKCTSCIVVGGS 645
Query: 717 KENLMSSALDLSKINPNIASKMGPPQTTQQ------------------TRLVGRDVALNK 758
+ + D N + P + + R G D L
Sbjct: 646 RSGANRNGGDSLSRYGNFKAPAPVPSSPGRFQRGRGGGYNNSGGRHGGGRGRGDDSLLGT 705
Query: 759 TVRIRSAGYKGQLGIVKDVNGDKATIELHSK 789
TV+IR +KG G V +V G+ +EL K
Sbjct: 706 TVKIRLGPFKGYRGPVVEVKGNSVRVELEMK 736
>At5g04290 [K] KOG1999 RNA polymerase II transcription elongation factor
DSIF/SUPT5H/SPT5
Length = 1493
Score = 88.2 bits (217), Expect = 6e-17
Identities = 142/641 (22%), Positives = 244/641 (37%), Gaps = 131/641 (20%)
Query: 200 DEDMHKIAEDFKK------RYGRDSSKDYRVQTQGGYVPQRFMLPSVDTAIIWSVRCRPG 253
+E+ +I E+ K RY D KD + + P+ IW V+C G
Sbjct: 105 EEEFDRIMEERYKPGSGFLRYADDDIKDA--------IEMDALAPTSKDPPIWKVKCAIG 156
Query: 254 KEKELVRKLLNKKFNLDKSMGSKKLKILSIFQRDNYTGRIYIEAPKQSVIEKFVNGVPDV 313
+E+ V L++K L K KL+I+S+F D+ G I+IEA K+ + + + +
Sbjct: 157 RERRSVFCLMHKFVELRKI--GTKLEIISVFSVDHVKGFIFIEADKEHDVLEACKSLVGI 214
Query: 314 YSNQKXXXXXXXXXXXXKPTKSDEVRLDVGSYVRIKRGIYKNDLAVIDQISQNNLEALLK 373
Y+ + K + ++ G++ R+K G YK DLA I +S +AL+K
Sbjct: 215 YATRMVLLPKAETPNLLTVQKKTK-KVSEGTWARVKNGKYKGDLAQIVAVSDTRNKALIK 273
Query: 374 IVPRLD-------YGKNDEIDPDTNQRKAKRATFASRPPPQLFNPTMALRLDQANLFKRD 426
++PR+D YG + Q A R +S + F P + +R D+
Sbjct: 274 LIPRIDIQALTQKYGGG--VTVQKGQTPAPRLISSSE--LEEFRPLIQVRRDR------- 322
Query: 427 DRHFTYRKEDYV---DGYLFKSFKIQYLDTKNIQPTVEELSRF----GSKEGDVDLAAIA 479
D T+ D + DGYL+K + + + + PT +EL +F + GDV+ +
Sbjct: 323 DTGITFEHLDSLMLKDGYLYKKVSLDSISSWGVIPTKDELLKFTPVDRKETGDVEWISEI 382
Query: 480 QTMKKAQASKAMFQPGDRVEVLTGEQ----RGSRGVVTRSSKDVISVKLSGFSDKSLEFP 535
++ + + G + E G + G +G +R K S S L
Sbjct: 383 YGEERKKKILPTCREGGKGEGSGGGKGEGSGGGKGEGSRGGKGEGSSDFKSESSYELYNL 442
Query: 536 IASLRKIFELGDHVTVIAGEHEGNAGLVLLVQ--NGQVTFVSDQTRENLTISANNLSKSM 593
+ RK F L I G + G +L + +G V +T+ K M
Sbjct: 443 VCFSRKDFGL------IVGVDDKGDGYKVLKEGIDGPVV---------VTVG----KKEM 483
Query: 594 DSTPTSSEYALHDIVELSAKNVACVIQAGHDIFKIIDDSGKVATVTKGSILAKINVARAK 653
+ P S++ ++L+ K ++ +D+ KI +KG K V R
Sbjct: 484 QNGPFDSKFT---ALDLNKKQISV-----NDVVKI----------SKGPSEGKQGVVRQV 525
Query: 654 VAAVDGNGREIKIGDVVREKIGSRREGQVLYVQNQHIFIRSKTITENAGVFVVNPMNVEA 713
+ IF+ ++ EN G F + E
Sbjct: 526 YRGI--------------------------------IFLYDESEEENGGYFCCKSQSCEK 553
Query: 714 V---ASKENLMSSALDLSKINPNIASKMGP--PQTTQQTRL---------VGRDVALNKT 759
V + N + D + ++S P P+ Q R +G ++ +
Sbjct: 554 VKLFTEESNEKTGGFDGTAFEDFVSSPKSPLSPEKEWQPRERYNSSNQGDIGSTYSIGQK 613
Query: 760 VRIRSAGYKGQLGIVKDVNGDKATIELHSKNKHITIDKRKL 800
+RIR KG L V + T++L S++K T+ L
Sbjct: 614 LRIRVGPLKGYLCRVIALRYSDVTVKLDSQHKIFTVKSEHL 654
Score = 57.4 bits (137), Expect = 1e-07
Identities = 31/82 (37%), Positives = 40/82 (47%), Gaps = 16/82 (19%)
Query: 969 SAWG-----GSGNKSQRSKNTGGSSTWGNNQSQHNSGERSAWGNASQ---------HNNS 1014
S+WG G G+ + GG S+WG SG SAWG ++ N+S
Sbjct: 1227 SSWGKQSDAGGGSSWGKQDGGGGGSSWGKQDGGGGSG--SAWGKQNETSNGSSWGKQNDS 1284
Query: 1015 GNRSAWGNQDARGGGSTWGGNN 1036
G S+WG QD GGGS+WG N
Sbjct: 1285 GGGSSWGKQDGGGGGSSWGKQN 1306
Score = 54.7 bits (130), Expect = 7e-07
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 11/70 (15%)
Query: 969 SAWG-----GSGNKSQRSKNTGGSSTWGNNQSQHNSGERSAWGNASQHNNSGNRSAWGNQ 1023
S+WG G G+ + + GG S+WG + ++G S+WG Q++ SG S+WG Q
Sbjct: 1130 SSWGKQDGDGGGSSWGKENDAGGGSSWG----KQDNGVGSSWGK--QNDGSGGGSSWGKQ 1183
Query: 1024 DARGGGSTWG 1033
+ GGGS+WG
Sbjct: 1184 NDAGGGSSWG 1193
Score = 53.5 bits (127), Expect = 2e-06
Identities = 38/138 (27%), Positives = 52/138 (37%), Gaps = 19/138 (13%)
Query: 912 GATSTWG------GASTWGNKXXXXXXXXXXXXXXXXXXXXXXXXNKSSYXXXXXXXXXX 965
G S+WG G S+WG + N +
Sbjct: 1139 GGGSSWGKENDAGGGSSWGKQDNGVGSSWGKQNDGSGGGSSWGKQNDAGGGSSWGKQDSG 1198
Query: 966 XXVSAWG------GSGNKSQRSKNTGGSSTWGNNQSQHNSGERSAWGNASQHNNSGNRSA 1019
S+WG SG+ + NT G S+WG Q ++G S+WG + + G S+
Sbjct: 1199 GDGSSWGKQDGGGDSGSAWGKQNNTSGGSSWGK---QSDAGGGSSWG---KQDGGGGGSS 1252
Query: 1020 WGNQDARGG-GSTWGGNN 1036
WG QD GG GS WG N
Sbjct: 1253 WGKQDGGGGSGSAWGKQN 1270
Score = 52.0 bits (123), Expect = 5e-06
Identities = 25/62 (40%), Positives = 36/62 (57%), Gaps = 6/62 (9%)
Query: 972 GGSGNKSQRSKNTGGSSTWGNNQSQHNSGERSAWGNASQHNNSGNRSAWGNQDARGGGST 1031
GGSG+ + T S+WG Q++SG S+WG + + G S+WG Q+ GGGS+
Sbjct: 1260 GGSGSAWGKQNETSNGSSWGK---QNDSGGGSSWG---KQDGGGGGSSWGKQNDGGGGSS 1313
Query: 1032 WG 1033
WG
Sbjct: 1314 WG 1315
Score = 51.6 bits (122), Expect = 6e-06
Identities = 29/73 (39%), Positives = 35/73 (47%), Gaps = 10/73 (13%)
Query: 969 SAWGGSGNKSQRSK-----NTGGSSTWGNNQSQHNSGERSAWGNASQHNNSGNRSAWGNQ 1023
SAWG N S S + GG S+WG Q G S+WG Q G+ SAWG Q
Sbjct: 1215 SAWGKQNNTSGGSSWGKQSDAGGGSSWGK---QDGGGGGSSWGK--QDGGGGSGSAWGKQ 1269
Query: 1024 DARGGGSTWGGNN 1036
+ GS+WG N
Sbjct: 1270 NETSNGSSWGKQN 1282
>ECU11g1930 [K] KOG1999 RNA polymerase II transcription elongation factor
DSIF/SUPT5H/SPT5
Length = 571
Score = 73.6 bits (179), Expect = 2e-12
Identities = 88/390 (22%), Positives = 159/390 (40%), Gaps = 76/390 (19%)
Query: 202 DMHKIAEDFKKRYGR-DSSKDYRVQTQGGYVPQRFMLPSVDTAIIWSVRCRPGKEKELVR 260
D K+ ++ +++Y ++ +T + Q ++P + ++ VR + G E+E++
Sbjct: 38 DWTKLTQELEEKYASIPEDEEIEEETVEHGIKQANLVPKNTSPRLFIVRVKRGSEREILM 97
Query: 261 KLLNKKFNLDKSMGSKKLKILSIFQRDNYTGRIYIEA-PKQSVIEKFVNGVPDVYSNQKX 319
+++ + + SI +D G +Y+EA KQ V++ + + +
Sbjct: 98 RIIE----------NDPKNVFSIICKDGLKGYLYVEAFQKQHVVD----ALESLRGVSRS 143
Query: 320 XXXXXXXXXXXKPTKSDEVRLDVGSYVRIKRGIYKNDLAVIDQISQNNLEALLKIVPRLD 379
+ E R+ G + RI+ G YKNDLA I I + ++ +PR+D
Sbjct: 144 RVSVVPQKEMIEAMTYHEQRI-CGEWGRIRNGKYKNDLAKI--IESDGEMVRIRTIPRID 200
Query: 380 YGKNDEIDPDTNQRKAKRATFASRPPPQLFNPTMALRLDQANLFKRDDRHFTYRKEDYVD 439
K +LFNP ++ K ++ Y+++ YVD
Sbjct: 201 GEK------------------------KLFNPE---NFKSGSVIK-SRGYYIYKRDTYVD 232
Query: 440 GYLFKSFKIQYLDTKNIQPTVEELSRFGSKEGDVDLAAIAQTMKKAQASKAMFQPGDRVE 499
G+L K +D +++PT EEL F GD+V
Sbjct: 233 GFLEKDVLKNSIDF-DVEPTFEELEEF--------------------HQACPISVGDKVR 271
Query: 500 VLTGEQRGSRGVVTRSSKDVISVKLSGFSDKSLEFPIASLRKIFELGDHVTVIAGEHEGN 559
V GE G +GVV RS I+V S D E + L K F+LG+ V+ ++G
Sbjct: 272 VTRGELIGMKGVV-RSISGTIAVVES--RDGKFEVQSSGLVKHFDLGETVS-----YKGE 323
Query: 560 AGLVLLVQNGQVTFVSDQTRENLTISANNL 589
G+V+ ++ + E L +S ++L
Sbjct: 324 NGVVVKIEGKDCIVATRDFTEELKVSIDDL 353
Score = 51.2 bits (121), Expect = 8e-06
Identities = 49/224 (21%), Positives = 99/224 (43%), Gaps = 44/224 (19%)
Query: 609 ELSAKNVACVIQAGHDIFKIIDDSGKVATVTKGSILAKINVARA---KVAAVDG-NGR-E 663
EL + AC I G + VT+G ++ V R+ +A V+ +G+ E
Sbjct: 254 ELEEFHQACPISVGDKV-----------RVTRGELIGMKGVVRSISGTIAVVESRDGKFE 302
Query: 664 IKIGDVVR-----EKIGSRRE-GQVLYVQNQHIFIRSKTITENAGVFVVNPMNVEAVASK 717
++ +V+ E + + E G V+ ++ + + ++ TE V + + + +
Sbjct: 303 VQSSGLVKHFDLGETVSYKGENGVVVKIEGKDCIVATRDFTEELKVSI-DDLKAPVTVNL 361
Query: 718 ENLMSSALDLSKINPNIASKMGPPQTTQQTRLVGRDVALNKTVRIRSAGYKGQLGIVKDV 777
+N ++ L+ K+ RD +NK V+I+ YKG G+VK+V
Sbjct: 362 QNEKTNELERKKVR--------------------RDPLINKEVQIQCGEYKGHGGVVKEV 401
Query: 778 NGDKATIELHSKNKHITIDKRKLTYFSHEG-GEGITYDELVSRR 820
+ + I+L+S K +T++K ++ EG + + Y E + +
Sbjct: 402 DRNICRIQLNSNMKFVTVEKSRIAVLGREGLSKPLRYSEAIGSK 445
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.312 0.130 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,471,566
Number of Sequences: 60738
Number of extensions: 2055370
Number of successful extensions: 6222
Number of sequences better than 1.0e-05: 9
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 6053
Number of HSP's gapped (non-prelim): 53
length of query: 1036
length of database: 30,389,216
effective HSP length: 117
effective length of query: 919
effective length of database: 23,282,870
effective search space: 21396957530
effective search space used: 21396957530
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)