ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII0238 normal A KOG0106 RNA processing and modification Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily)
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII0238 77439 78464 342
(342 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YDR432w [A] KOG0106 Alternative splicing factor SRp55/B52/SRp75 ... 221 9e-58
SPAC16.02c [A] KOG0106 Alternative splicing factor SRp55/B52/SRp... 78 2e-14
YCL011c [R] KOG0118 FOG: RRM domain 52 2e-06
>YDR432w [A] KOG0106 Alternative splicing factor SRp55/B52/SRp75 (RRM
superfamily)
Length = 414
Score = 221 bits (564), Expect = 9e-58
Identities = 106/162 (65%), Positives = 129/162 (79%)
Query: 48 ELSDTRLFVKPFPPDVTDAEMKEIFEPFGALKEIKILNGXXXXXXXXXXXXXXXIQNVAG 107
ELS+TRLFV+PFP DV ++E+ EIF PFG +KE+KILNG I+ V G
Sbjct: 121 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEEVHG 180
Query: 108 KMFADYPLEVVFSKKLKPRFRVIIRNLPEGCAWQELKDLARDNQLETTFSSVNTRDFDGT 167
K FA+ PLEVV+SK R+R+ ++NLPEGC+WQ+LKDLAR+N LETTFSSVNTRDFDGT
Sbjct: 181 KSFANQPLEVVYSKLPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGT 240
Query: 168 GALEFPTEEILQEAIEKLNNIEFRGSVLAVEKDENPPPIRSS 209
GALEFP+EEIL EA+E+LNNIEFRGSV+ VE+D+NPPPIR S
Sbjct: 241 GALEFPSEEILVEALERLNNIEFRGSVITVERDDNPPPIRRS 282
>SPAC16.02c [A] KOG0106 Alternative splicing factor SRp55/B52/SRp75 (RRM
superfamily)
Length = 365
Score = 78.2 bits (191), Expect = 2e-14
Identities = 51/171 (29%), Positives = 81/171 (46%), Gaps = 21/171 (12%)
Query: 49 LSDTRLFVKPFPPDVTDAEMKEIFEPFGALKEIKILNGXXXXXXXXXXXXXXXIQNVAGK 108
+S+TRLFV PP T +M + F+ +G + + K++NG + + GK
Sbjct: 1 MSETRLFVGRIPPQATREDMMDFFKGYGQILDCKLMNGFGFVEVEDARDARDIVNDFQGK 60
Query: 109 MFADYPL----------------EVVFSKKLKPR---FRVIIRNLPEGCAWQELKDLARD 149
F + E SK +PR FR+I+ NL E +WQ+LKD+ R
Sbjct: 61 EFMGSRIVVEPARGERRRRENFRESAASKYPRPRRTGFRLIVENLSEDVSWQDLKDVMR- 119
Query: 150 NQLETTFSSVNTRDFDGTGALEFPTEEILQEAIEKLNNIEFRGSVLAVEKD 200
E TF+ + R+ G G +EF TEE ++ A+ LN +G + + +D
Sbjct: 120 KAGEPTFTDAH-RENPGAGVVEFSTEEDMRNALTSLNGEVIKGQAVTLRED 169
>YCL011c [R] KOG0118 FOG: RRM domain
Length = 427
Score = 51.6 bits (122), Expect = 2e-06
Identities = 47/177 (26%), Positives = 71/177 (39%), Gaps = 32/177 (18%)
Query: 51 DTRLFVKPFPPDVTDAEMKEIFEPFGALKEIKILN------GXXXXXXXXXXXXXXXIQN 104
+ +FV+ D T ++KE+F G + E I+ G I
Sbjct: 121 ENSIFVRNLTFDCTPEDLKELFGTVGEVVEADIITSKGHHRGMGTVEFTKNESVQDAISK 180
Query: 105 VAGKMFADYPLEV-----------VFSKK-----LKPRFRVIIRNLPEGCAWQELKDLAR 148
G +F D L V FSKK + F V I NLP WQ LKD+ +
Sbjct: 181 FDGALFMDRKLMVRQDNPPPEAAKEFSKKATREEIDNGFEVFIINLPYSMNWQSLKDMFK 240
Query: 149 D------NQLETTFSSVNTRDFDGTGALEFPTEEILQEAIEKLNNIEFRGSVLAVEK 199
+ +E F+ + G G++ +PTE+ + AI+ N +E G VL V +
Sbjct: 241 ECGHVLRADVELDFNGFSR----GFGSVIYPTEDEMIRAIDTFNGMEVEGRVLEVRE 293
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.315 0.136 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,648,375
Number of Sequences: 60738
Number of extensions: 459274
Number of successful extensions: 1423
Number of sequences better than 1.0e-05: 3
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1417
Number of HSP's gapped (non-prelim): 6
length of query: 342
length of database: 30,389,216
effective HSP length: 107
effective length of query: 235
effective length of database: 23,890,250
effective search space: 5614208750
effective search space used: 5614208750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)