ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII0258 good K KOG3219 Transcription Transcription initiation factor TFIID, subunit TAF11
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII0258 84876 85925 350
(350 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YML015c [K] KOG3219 Transcription initiation factor TFIID subuni... 275 9e-74
Hs5032151 [K] KOG3219 Transcription initiation factor TFIID subu... 75 1e-13
SPAC1002.04c [K] KOG3219 Transcription initiation factor TFIID s... 75 2e-13
7297552 [K] KOG3219 Transcription initiation factor TFIID subuni... 71 2e-12
Hs17444821 [K] KOG3219 Transcription initiation factor TFIID sub... 65 1e-10
Hs20543116 [K] KOG3219 Transcription initiation factor TFIID sub... 64 4e-10
Hs20543112 [K] KOG3219 Transcription initiation factor TFIID sub... 64 4e-10
Hs22047038 [K] KOG3219 Transcription initiation factor TFIID sub... 63 7e-10
Hs22048762 [K] KOG3219 Transcription initiation factor TFIID sub... 62 1e-09
Hs20543100 [K] KOG3219 Transcription initiation factor TFIID sub... 62 1e-09
Hs20543124 [K] KOG3219 Transcription initiation factor TFIID sub... 62 1e-09
Hs22048756 [K] KOG3219 Transcription initiation factor TFIID sub... 61 3e-09
Hs20540175 [K] KOG3219 Transcription initiation factor TFIID sub... 60 4e-09
CE07258 [K] KOG3219 Transcription initiation factor TFIID subuni... 56 9e-08
CE06172 [K] KOG3219 Transcription initiation factor TFIID subuni... 53 6e-07
At4g20280 [K] KOG3219 Transcription initiation factor TFIID subu... 50 4e-06
>YML015c [K] KOG3219 Transcription initiation factor TFIID subunit TAF11
Length = 346
Score = 275 bits (702), Expect = 9e-74
Identities = 150/366 (40%), Positives = 222/366 (59%), Gaps = 36/366 (9%)
Query: 1 MSEADGPLYKLPLDTYQPSVTYASYISTKQMIDQVLNEDQEYVMWKLRNRRLAGNMKDYL 60
M+E GPL +P Y P +T A+Y STKQMIDQV++EDQ+YV WKL+N R G
Sbjct: 1 MTEPQGPLDTIPKVNYPPILTIANYFSTKQMIDQVISEDQDYVTWKLQNLRTGGT----- 55
Query: 61 DEFKNEVEHFQSMEWHRKSQSPSSFKKNHNKVTKKQSWDLNRIPPNVVFARDI------- 113
N++ + +K ++ ++ +N++P N++F +DI
Sbjct: 56 -SINNQLNKYPK------------YKYQKTRINQQDPDSINKVPENLIFPQDILQQQTQN 102
Query: 114 --YERKIKSLPRPRELDETDLKKLFMSHLDDEQMNRYEVFKRTSLAKNQIKKISGVVTNQ 171
YE + +L + + KL +++LD +Q NR+EVF RTSL K Q+KK++ V NQ
Sbjct: 103 SNYEDTNTNEDENEKLAQDEQFKLLVTNLDKDQTNRFEVFHRTSLNKTQVKKLASTVANQ 162
Query: 172 TVANNINLLLGGVGKIFVGEIVEKALDIKEKWLLGLVVNKFHERKRIGVSLKKHLKKLT- 230
T++ NI + L VGKI+ GEI+E A+ +K KWL + +F +R +IG LKK+LKKLT
Sbjct: 163 TISENIRVFLQAVGKIYAGEIIELAMIVKNKWLTSQMCIEFDKRTKIGYKLKKYLKKLTF 222
Query: 231 RLVERSDSEDSFNDINDSVQESEPESADTDDEGEIKFMKTSNNLLQSQ------NNVESV 284
++E + + +DSV E EP+ D+E + + N+LLQS+ +N + +
Sbjct: 223 SIIENQQYKQDYQ--SDSVPEDEPDFYFDDEEVDKRETTLGNSLLQSKSLQQSDHNSQDL 280
Query: 285 RKGLIKQYNILVAKFNELDVSVEKYKDSPLLPEHVHEAWRLYRIENDTLPSGQYRTQGEA 344
+ LI+QYN LV +FN+LDVS+EKY +SPLLPEH+ EAWRLYR+++DTLP+ +RTQGE
Sbjct: 281 KLQLIEQYNKLVLQFNKLDVSIEKYNNSPLLPEHIREAWRLYRLQSDTLPNAYWRTQGEG 340
Query: 345 NGLMFR 350
G MFR
Sbjct: 341 QGSMFR 346
>Hs5032151 [K] KOG3219 Transcription initiation factor TFIID subunit TAF11
Length = 211
Score = 75.5 bits (184), Expect = 1e-13
Identities = 35/94 (37%), Positives = 64/94 (67%), Gaps = 6/94 (6%)
Query: 112 DIYERKIKSLPRPRELDETDLKKL--FMSHLDDEQMNRYEVFKRTSLAKNQIKKISGVVT 169
D E+K K +++DE +++K+ +S +EQ+NRYE+++R++ K IK++ +T
Sbjct: 87 DTKEKKEKK----QKVDEDEIQKMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQSIT 142
Query: 170 NQTVANNINLLLGGVGKIFVGEIVEKALDIKEKW 203
+V+ N+ + + G+ K+FVGE+VE+ALD+ EKW
Sbjct: 143 GTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKW 176
>SPAC1002.04c [K] KOG3219 Transcription initiation factor TFIID subunit TAF11
Length = 199
Score = 74.7 bits (182), Expect = 2e-13
Identities = 36/85 (42%), Positives = 56/85 (65%), Gaps = 4/85 (4%)
Query: 123 RPRELDETDLKKLFMSHL----DDEQMNRYEVFKRTSLAKNQIKKISGVVTNQTVANNIN 178
+P E D+ +KL +L D+EQM RYEVF+R +L K +KK++ + NQ+V N+
Sbjct: 79 KPGETDDEANEKLRTKYLLESFDEEQMQRYEVFRRANLNKTNVKKLANQILNQSVTPNVA 138
Query: 179 LLLGGVGKIFVGEIVEKALDIKEKW 203
+++ G K+FVGEIVE A I+++W
Sbjct: 139 IVISGFSKVFVGEIVELARKIQDQW 163
>7297552 [K] KOG3219 Transcription initiation factor TFIID subunit TAF11
Length = 196
Score = 71.2 bits (173), Expect = 2e-12
Identities = 40/138 (28%), Positives = 77/138 (54%), Gaps = 4/138 (2%)
Query: 66 EVEHFQSMEWHRKSQSPSSFKKNHNKVTKKQSWDLNRIPPNVVFARDIYERKIKSLPRPR 125
+++ FQS RK S + ++ K D + N D E K L +
Sbjct: 22 DLKFFQSASGERKDSDTSDPGNDADRDGKDADGDNDN--KNTDGDGDSGEPAHKKLKTKK 79
Query: 126 ELDETDLKKL--FMSHLDDEQMNRYEVFKRTSLAKNQIKKISGVVTNQTVANNINLLLGG 183
EL+E + +++ +S+ +EQ++RYE+++R++ K +K++ +T +V+ N+ + + G
Sbjct: 80 ELEEEERERMQVLVSNFTEEQLDRYEMYRRSAFPKAAVKRLMQTITGCSVSQNVVIAMSG 139
Query: 184 VGKIFVGEIVEKALDIKE 201
+ K+FVGE+VE+ALD+ E
Sbjct: 140 IAKVFVGEVVEEALDVME 157
>Hs17444821 [K] KOG3219 Transcription initiation factor TFIID subunit TAF11
Length = 183
Score = 65.1 bits (157), Expect = 1e-10
Identities = 43/156 (27%), Positives = 77/156 (48%), Gaps = 11/156 (7%)
Query: 50 RRLAGNMKDYLDE-FKNEVEHFQSMEWHRKSQSPSSFKKNHNKVTKKQSWDLNRIPPNVV 108
R L G+ KD + E +E + E +S+ + N+ + PP
Sbjct: 3 RDLKGSKKDGIPEDLDGNLEEPRDQEGELRSEDVMDLTEGDNEASASA-------PPAA- 54
Query: 109 FARDIYERKIKSLPRPR-ELDETDLKKLFMSHLDDEQMNRYEVFKRTSLAKNQIKKISGV 167
R + K K +P + +E +S + +EQ++RYEV +R++ K I +
Sbjct: 55 -KRRKTDTKGKKERKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPKACIAGLMRS 113
Query: 168 VTNQTVANNINLLLGGVGKIFVGEIVEKALDIKEKW 203
+T ++V+ N+ + + G+ K+FVGE+VE+ALD+ E W
Sbjct: 114 ITGRSVSENVAIAMAGIAKVFVGEVVEEALDVCEMW 149
>Hs20543116 [K] KOG3219 Transcription initiation factor TFIID subunit TAF11
Length = 183
Score = 63.5 bits (153), Expect = 4e-10
Identities = 38/155 (24%), Positives = 74/155 (47%), Gaps = 9/155 (5%)
Query: 50 RRLAGNMKDYLDE-FKNEVEHFQSMEWHRKSQSPSSFKKNHNKVTKKQSWDLNRIPPNVV 108
R L G+ KD + E +E + E +S+ + ++ + P
Sbjct: 3 RGLKGSKKDGIPEDLDGNLEEPRDQEGELRSEDVMDLTEGDSEASASA--------PPAA 54
Query: 109 FARDIYERKIKSLPRPRELDETDLKKLFMSHLDDEQMNRYEVFKRTSLAKNQIKKISGVV 168
R + ++ K + +E +S + +EQ++RYEV +R++ + +I + +
Sbjct: 55 KRRKTHTKRKKERKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARIAGLMRSI 114
Query: 169 TNQTVANNINLLLGGVGKIFVGEIVEKALDIKEKW 203
T +V+ N + + G+ K+FVGE+VE+ALD+ E W
Sbjct: 115 TGSSVSENAAIAMAGIAKVFVGEVVEEALDMCEMW 149
>Hs20543112 [K] KOG3219 Transcription initiation factor TFIID subunit TAF11
Length = 198
Score = 63.5 bits (153), Expect = 4e-10
Identities = 27/78 (34%), Positives = 49/78 (62%)
Query: 126 ELDETDLKKLFMSHLDDEQMNRYEVFKRTSLAKNQIKKISGVVTNQTVANNINLLLGGVG 185
+ +E S + +EQ++RYEV +R++ K +I + +T ++V+ N + + G+
Sbjct: 87 DAEEAQRMTTLFSAMSEEQLSRYEVCRRSAFPKARIAALMQSITGRSVSENTAIAMAGIA 146
Query: 186 KIFVGEIVEKALDIKEKW 203
K+FVGE+VE+ALD+ E W
Sbjct: 147 KVFVGEVVEEALDVCEMW 164
>Hs22047038 [K] KOG3219 Transcription initiation factor TFIID subunit TAF11
Length = 197
Score = 62.8 bits (151), Expect = 7e-10
Identities = 36/126 (28%), Positives = 64/126 (50%)
Query: 126 ELDETDLKKLFMSHLDDEQMNRYEVFKRTSLAKNQIKKISGVVTNQTVANNINLLLGGVG 185
+ +E +S + +EQ++RYEV +R++ + ++ + +T +V+ N + + G+
Sbjct: 72 DAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIA 131
Query: 186 KIFVGEIVEKALDIKEKWLLGLVVNKFHERKRIGVSLKKHLKKLTRLVERSDSEDSFNDI 245
K+FVGE+VE+ALD+ E W + H R+ + K L T E S S +
Sbjct: 132 KLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPPTATAEESCSRPTARGQ 191
Query: 246 NDSVQE 251
VQE
Sbjct: 192 GLFVQE 197
>Hs22048762 [K] KOG3219 Transcription initiation factor TFIID subunit TAF11
Length = 199
Score = 62.4 bits (150), Expect = 1e-09
Identities = 25/78 (32%), Positives = 49/78 (62%)
Query: 126 ELDETDLKKLFMSHLDDEQMNRYEVFKRTSLAKNQIKKISGVVTNQTVANNINLLLGGVG 185
+ +E +S + +EQ++RYEV +R++ + ++ + +T +V+ N + + G+
Sbjct: 88 DAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIA 147
Query: 186 KIFVGEIVEKALDIKEKW 203
K+FVGE+VE+ALD+ E W
Sbjct: 148 KLFVGEVVEEALDVCEMW 165
>Hs20543100 [K] KOG3219 Transcription initiation factor TFIID subunit TAF11
Length = 183
Score = 62.4 bits (150), Expect = 1e-09
Identities = 25/78 (32%), Positives = 49/78 (62%)
Query: 126 ELDETDLKKLFMSHLDDEQMNRYEVFKRTSLAKNQIKKISGVVTNQTVANNINLLLGGVG 185
+ +E +S + +EQ++RYEV +R++ + ++ + +T +V+ N + + G+
Sbjct: 72 DAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIA 131
Query: 186 KIFVGEIVEKALDIKEKW 203
K+FVGE+VE+ALD+ E W
Sbjct: 132 KLFVGEVVEEALDVCEMW 149
>Hs20543124 [K] KOG3219 Transcription initiation factor TFIID subunit TAF11
Length = 183
Score = 62.0 bits (149), Expect = 1e-09
Identities = 25/78 (32%), Positives = 49/78 (62%)
Query: 126 ELDETDLKKLFMSHLDDEQMNRYEVFKRTSLAKNQIKKISGVVTNQTVANNINLLLGGVG 185
+ +E +S + +EQ++RYEV +R++ + ++ + +T +V+ N + + G+
Sbjct: 72 DAEEAHRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIA 131
Query: 186 KIFVGEIVEKALDIKEKW 203
K+FVGE+VE+ALD+ E W
Sbjct: 132 KLFVGEVVEEALDVCEMW 149
>Hs22048756 [K] KOG3219 Transcription initiation factor TFIID subunit TAF11
Length = 197
Score = 60.8 bits (146), Expect = 3e-09
Identities = 25/78 (32%), Positives = 49/78 (62%)
Query: 126 ELDETDLKKLFMSHLDDEQMNRYEVFKRTSLAKNQIKKISGVVTNQTVANNINLLLGGVG 185
+ +E +S + +EQ++RYEV ++ + K + ++ +T ++V N+ + + G+
Sbjct: 87 DAEEAQRMTTLLSAMSEEQLSRYEVCRQLAFPKALVARLMWSITGRSVPENMAIAMAGIA 146
Query: 186 KIFVGEIVEKALDIKEKW 203
K+FVGE+VE+ALD+ E W
Sbjct: 147 KVFVGEVVEEALDMCEMW 164
>Hs20540175 [K] KOG3219 Transcription initiation factor TFIID subunit TAF11
Length = 183
Score = 60.5 bits (145), Expect = 4e-09
Identities = 25/78 (32%), Positives = 48/78 (61%)
Query: 126 ELDETDLKKLFMSHLDDEQMNRYEVFKRTSLAKNQIKKISGVVTNQTVANNINLLLGGVG 185
+ +E +S + +EQ+ RYEV ++++ K +I + +T +V+ N+ + + G+
Sbjct: 72 DAEEAQRMTTLLSAMSEEQLARYEVCRQSAFPKARIAALMQSITGSSVSENVAIAMAGIA 131
Query: 186 KIFVGEIVEKALDIKEKW 203
K+ VGE+VE+ALD+ E W
Sbjct: 132 KVLVGEVVEEALDVCEMW 149
>CE07258 [K] KOG3219 Transcription initiation factor TFIID subunit TAF11
Length = 345
Score = 55.8 bits (133), Expect = 9e-08
Identities = 28/79 (35%), Positives = 50/79 (62%), Gaps = 5/79 (6%)
Query: 128 DETDLKKL----FMSHLDDEQMNRYEVFKRTSLAKNQIKK-ISGVVTNQTVANNINLLLG 182
+E +L +L +S+ EQ+ RYE ++R+S K+ I++ IS V ++ + +
Sbjct: 227 EENELSRLKTQVLLSNFSQEQLERYESYRRSSFQKSTIRRLISQYTGGVNVGQSVVIAIA 286
Query: 183 GVGKIFVGEIVEKALDIKE 201
G+ K+FVGE+VE+ALDI++
Sbjct: 287 GLAKVFVGEVVEEALDIRD 305
>CE06172 [K] KOG3219 Transcription initiation factor TFIID subunit TAF11
Length = 327
Score = 53.1 bits (126), Expect = 6e-07
Identities = 27/88 (30%), Positives = 53/88 (59%), Gaps = 8/88 (9%)
Query: 122 PRPRELDETDLKKLFM-------SHLDDEQMNRYEVFKRTSLAKNQIKKISGVVTNQT-V 173
P R++ E + K++ + ++ EQ+ RYEV++++S K+ IK++ T +
Sbjct: 203 PTKRQILEQEEKEIILLKNQVLVANFSQEQIERYEVYRKSSFKKSTIKRLINEFTGGIDL 262
Query: 174 ANNINLLLGGVGKIFVGEIVEKALDIKE 201
+++ + G+ K+ VGEIVE+ALDI++
Sbjct: 263 GKKVDIAVAGLAKVLVGEIVEEALDIRD 290
>At4g20280 [K] KOG3219 Transcription initiation factor TFIID subunit TAF11
Length = 210
Score = 50.4 bits (119), Expect = 4e-06
Identities = 27/76 (35%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 124 PRELDETDLKKL--FMSHLDDEQMNRYEVFKRTSLAKNQIKK-ISGVVTNQTVANNINLL 180
P D + K+ +S ++QM+RYE F+R++L + Q+KK + GV +Q + + ++
Sbjct: 94 PTSSDPAKMAKMQTILSQFTEDQMSRYESFRRSALQRPQMKKLLIGVTGSQKIGMPMIIV 153
Query: 181 LGGVGKIFVGEIVEKA 196
G+ K+FVGE+VE A
Sbjct: 154 ACGIAKMFVGELVETA 169
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.314 0.132 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,851,836
Number of Sequences: 60738
Number of extensions: 971936
Number of successful extensions: 3623
Number of sequences better than 1.0e-05: 16
Number of HSP's better than 0.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3601
Number of HSP's gapped (non-prelim): 18
length of query: 350
length of database: 30,389,216
effective HSP length: 107
effective length of query: 243
effective length of database: 23,890,250
effective search space: 5805330750
effective search space used: 5805330750
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)