ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactII0289   suspect: LH   O     KOG2603  Posttranslational modification, protein turnover, chaperones   Oligosaccharyltransferase, gamma subunit

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactII0289  96846 95851 -332 
         (332 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YML019w [O] KOG2603 Oligosaccharyltransferase gamma subunit           211   2e-54

>YML019w [O] KOG2603 Oligosaccharyltransferase gamma subunit
          Length = 332

 Score =  211 bits (536), Expect = 2e-54
 Identities = 117/326 (35%), Positives = 178/326 (53%), Gaps = 6/326 (1%)

Query: 3   LWLLAFILGLLCHSTNASSLSIEEVSQYRDQDGIVIVNDDNYERFGKGLREFYSVVFITS 62
           +WL A I      ST  +S +I+++ Q +D  G++ V  DNY    +G+  ++++++IT 
Sbjct: 10  IWL-AIIFHKFQKSTATASHNIDDILQLKDDTGVITVTADNYPLLSRGVPGYFNILYITM 68

Query: 63  DKPNSGGETCDLCKEFEPNMRSVSRSILNQLPKDQSDRIVFFKVDLAYNPIFLKEFQVTK 122
              NS G +C LC +FE    +V+  I +Q P+  +   +FF VD+   P  +K+ ++  
Sbjct: 69  RGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLN---LFFTVDVNEVPQLVKDLKLQN 125

Query: 123 IPFCLVYPPQLEVGADGQDFGWKHSVFYQYVIRKENMKQPIHFGDFLAKILNVFISIDER 182
           +P  +VYPP  E     Q F WK S FYQY +  EN +  + FGDFLAKILN+ I++ + 
Sbjct: 126 VPHLVVYPPA-ESNKQSQ-FEWKTSPFYQYSLVPENAENTLQFGDFLAKILNISITVPQA 183

Query: 183 FEYDKFIQAFCLXXXXXXXXXXXILPLIENKPRFFLGCXXXXXXXXXXXGYNFTSIKHIP 242
           F   +F+  F             ILP + NK + F              GY F  +  IP
Sbjct: 184 FNVQEFVYYFVACMVVFIFIKKVILPKVTNKWKLFSMILSLGILLPSITGYKFVEMNAIP 243

Query: 243 FIAQDDKGQIMWFSGGSHYQFGIEVLTISLLYTVLGGLTVALCMVQFSKRLKKVQKCVLV 302
           FIA+D K +IM+FSGGS +QFGIE+ ++SL+Y V+  L+V L  V     + +  + +L 
Sbjct: 244 FIARDAKNRIMYFSGGSGWQFGIEIFSVSLMYIVMSALSVLLIYVPKISCVSEKMRGLLS 303

Query: 303 MIIAASLFYIYMYFLSIIKIKYPGYP 328
             +A  LFY + YF+S   IK PGYP
Sbjct: 304 SFLACVLFYFFSYFISCYLIKNPGYP 329


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.328    0.146    0.449 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,118,737
Number of Sequences: 60738
Number of extensions: 758177
Number of successful extensions: 2029
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2024
Number of HSP's gapped (non-prelim): 1
length of query: 332
length of database: 30,389,216
effective HSP length: 107
effective length of query: 225
effective length of database: 23,890,250
effective search space: 5375306250
effective search space used: 5375306250
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)