ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII0344 good J KOG0187 Translation, ribosomal structure and biogenesis 40S ribosomal protein S17
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII0344 117040 116708 -111
(111 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YDR447c [J] KOG0187 40S ribosomal protein S17 174 2e-44
YML024w [J] KOG0187 40S ribosomal protein S17 172 7e-44
SPBC839.05c [J] KOG0187 40S ribosomal protein S17 130 3e-31
SPCC24B10.09 [J] KOG0187 40S ribosomal protein S17 129 5e-31
Hs4506693 [J] KOG0187 40S ribosomal protein S17 120 4e-28
CE26948 [J] KOG0187 40S ribosomal protein S17 117 3e-27
At5g04800 [J] KOG0187 40S ribosomal protein S17 113 5e-26
At2g05220 [J] KOG0187 40S ribosomal protein S17 113 5e-26
At2g04390 [J] KOG0187 40S ribosomal protein S17 113 5e-26
At3g10610 [J] KOG0187 40S ribosomal protein S17 112 6e-26
Hs18560678 [J] KOG0187 40S ribosomal protein S17 109 7e-25
Hs20554971 [J] KOG0187 40S ribosomal protein S17 108 9e-25
7294943 [J] KOG0187 40S ribosomal protein S17 105 1e-23
Hs22040880 [J] KOG0187 40S ribosomal protein S17 101 2e-22
Hs22045746 [J] KOG0187 40S ribosomal protein S17 96 8e-21
Hs18564779 [J] KOG0187 40S ribosomal protein S17 89 1e-18
ECU02g0770 [J] KOG0187 40S ribosomal protein S17 69 1e-12
Hs22049992 [J] KOG0187 40S ribosomal protein S17 55 2e-08
>YDR447c [J] KOG0187 40S ribosomal protein S17
Length = 136
Score = 174 bits (441), Expect = 2e-44
Identities = 89/111 (80%), Positives = 93/111 (83%)
Query: 1 MDFQTNKRLCDEIATIQSKRLRNKIAGYTTHLMKRIQKGPVRGISFKLQEEERERKDQYV 60
+DFQTNKRLCDEIATIQSKRLRNKIAGYTTHLMKRIQKGPVRGISFKLQEEERERKDQYV
Sbjct: 26 LDFQTNKRLCDEIATIQSKRLRNKIAGYTTHLMKRIQKGPVRGISFKLQEEERERKDQYV 85
Query: 61 PDVSALDLSHSNDVLNVDTQTAELVNSLGLKLPLXXXXXXXXXXXXXXKRN 111
P+VSALDLS SN VLNVD QT++LV SLGLKLPL KRN
Sbjct: 86 PEVSALDLSRSNGVLNVDNQTSDLVKSLGLKLPLSVINVSAQRDRRYRKRN 136
>YML024w [J] KOG0187 40S ribosomal protein S17
Length = 136
Score = 172 bits (436), Expect = 7e-44
Identities = 86/94 (91%), Positives = 90/94 (95%)
Query: 1 MDFQTNKRLCDEIATIQSKRLRNKIAGYTTHLMKRIQKGPVRGISFKLQEEERERKDQYV 60
+DFQTNKRLCDEIATIQSKRLRNKIAGYTTHLMKRIQKGPVRGISFKLQEEERERKDQYV
Sbjct: 26 LDFQTNKRLCDEIATIQSKRLRNKIAGYTTHLMKRIQKGPVRGISFKLQEEERERKDQYV 85
Query: 61 PDVSALDLSHSNDVLNVDTQTAELVNSLGLKLPL 94
P+VSALDLS SN VLNVD QT++LV SLGLKLPL
Sbjct: 86 PEVSALDLSRSNGVLNVDNQTSDLVKSLGLKLPL 119
>SPBC839.05c [J] KOG0187 40S ribosomal protein S17
Length = 131
Score = 130 bits (327), Expect = 3e-31
Identities = 65/89 (73%), Positives = 76/89 (85%), Gaps = 4/89 (4%)
Query: 1 MDFQTNKRLCDEIATIQSKRLRNKIAGYTTHLMKRIQKGPVRGISFKLQEEERERKDQYV 60
+DFQTNKR+ DE+A I SKRLRNKIAGYTTHLMKRIQ+GPVRGISFKLQEEERERKDQYV
Sbjct: 26 LDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEEERERKDQYV 85
Query: 61 PDVSALDLSHSNDVLNVDTQTAELVNSLG 89
P+VS L++ D +NVD T +++ SLG
Sbjct: 86 PEVSELEV----DRVNVDQDTKDMLKSLG 110
>SPCC24B10.09 [J] KOG0187 40S ribosomal protein S17
Length = 132
Score = 129 bits (325), Expect = 5e-31
Identities = 64/89 (71%), Positives = 75/89 (83%), Gaps = 4/89 (4%)
Query: 1 MDFQTNKRLCDEIATIQSKRLRNKIAGYTTHLMKRIQKGPVRGISFKLQEEERERKDQYV 60
+DFQTNKR+ DE+A I SKRLRNKIAGYTTHLMKRIQ+GPVRGISFKLQEEERERKDQYV
Sbjct: 26 LDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEEERERKDQYV 85
Query: 61 PDVSALDLSHSNDVLNVDTQTAELVNSLG 89
P+VS L+ D +NVD T +++ +LG
Sbjct: 86 PEVSELE----KDKINVDQDTKDMLKALG 110
>Hs4506693 [J] KOG0187 40S ribosomal protein S17
Length = 135
Score = 120 bits (300), Expect = 4e-28
Identities = 59/87 (67%), Positives = 70/87 (79%), Gaps = 4/87 (4%)
Query: 2 DFQTNKRLCDEIATIQSKRLRNKIAGYTTHLMKRIQKGPVRGISFKLQEEERERKDQYVP 61
DF TNKR+C+EIA I SK+LRNKIAGY THLMKRIQ+GPVRGIS KLQEEERER+D YVP
Sbjct: 27 DFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVP 86
Query: 62 DVSALDLSHSNDVLNVDTQTAELVNSL 88
+VSALD +++ VD T E++ L
Sbjct: 87 EVSALD----QEIIEVDPDTKEMLKLL 109
>CE26948 [J] KOG0187 40S ribosomal protein S17
Length = 130
Score = 117 bits (293), Expect = 3e-27
Identities = 55/92 (59%), Positives = 71/92 (76%), Gaps = 1/92 (1%)
Query: 2 DFQTNKRLCDEIATIQSKRLRNKIAGYTTHLMKRIQKGPVRGISFKLQEEERERKDQYVP 61
DF NKR+CDE+A I SK LRNKIAGY THLM+RI++GPVRGIS KLQEEERER+D Y+P
Sbjct: 27 DFHNNKRVCDEVAIIGSKPLRNKIAGYITHLMRRIERGPVRGISIKLQEEERERRDNYMP 86
Query: 62 DVSALDLSHSNDVLNVDTQTAELVNSLGLKLP 93
++S +D S + VDT T++++ + G LP
Sbjct: 87 EISTVDPSQLTSI-KVDTDTSDMLKAAGFNLP 117
>At5g04800 [J] KOG0187 40S ribosomal protein S17
Length = 141
Score = 113 bits (282), Expect = 5e-26
Identities = 56/90 (62%), Positives = 71/90 (78%), Gaps = 4/90 (4%)
Query: 1 MDFQTNKRLCDEIATIQSKRLRNKIAGYTTHLMKRIQKGPVRGISFKLQEEERERKDQYV 60
+DF TNK++ +E+A I SKRLRNKIAG++THLMKRIQKGPVRGIS KLQEEERER+ +V
Sbjct: 26 LDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFV 85
Query: 61 PDVSALDLSHSNDVLNVDTQTAELVNSLGL 90
PD SA+ D + VD +T E++ SLG+
Sbjct: 86 PDESAI----KTDEIKVDKETLEMLASLGM 111
>At2g05220 [J] KOG0187 40S ribosomal protein S17
Length = 179
Score = 113 bits (282), Expect = 5e-26
Identities = 56/90 (62%), Positives = 71/90 (78%), Gaps = 4/90 (4%)
Query: 1 MDFQTNKRLCDEIATIQSKRLRNKIAGYTTHLMKRIQKGPVRGISFKLQEEERERKDQYV 60
+DF TNK++ +E+A I SKRLRNKIAG++THLMKRIQKGPVRGIS KLQEEERER+ +V
Sbjct: 65 LDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFV 124
Query: 61 PDVSALDLSHSNDVLNVDTQTAELVNSLGL 90
PD SA+ D + VD +T E++ SLG+
Sbjct: 125 PDESAI----KTDEIKVDKETLEMLASLGM 150
>At2g04390 [J] KOG0187 40S ribosomal protein S17
Length = 141
Score = 113 bits (282), Expect = 5e-26
Identities = 56/90 (62%), Positives = 71/90 (78%), Gaps = 4/90 (4%)
Query: 1 MDFQTNKRLCDEIATIQSKRLRNKIAGYTTHLMKRIQKGPVRGISFKLQEEERERKDQYV 60
+DF TNK++ +E+A I SKRLRNKIAG++THLMKRIQKGPVRGIS KLQEEERER+ +V
Sbjct: 26 LDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFV 85
Query: 61 PDVSALDLSHSNDVLNVDTQTAELVNSLGL 90
PD SA+ D + VD +T E++ SLG+
Sbjct: 86 PDESAI----KTDEIKVDKETLEMLASLGM 111
>At3g10610 [J] KOG0187 40S ribosomal protein S17
Length = 140
Score = 112 bits (281), Expect = 6e-26
Identities = 56/90 (62%), Positives = 72/90 (79%), Gaps = 4/90 (4%)
Query: 1 MDFQTNKRLCDEIATIQSKRLRNKIAGYTTHLMKRIQKGPVRGISFKLQEEERERKDQYV 60
+DF TNK++ +E+A I SKRLRNKIAG++THLMKRIQKGPVRGIS KLQEEERER+ +V
Sbjct: 26 LDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFV 85
Query: 61 PDVSALDLSHSNDVLNVDTQTAELVNSLGL 90
PD SA+ + D + VD +T E++ SLG+
Sbjct: 86 PDESAIKI----DDVKVDKETLEMLASLGM 111
>Hs18560678 [J] KOG0187 40S ribosomal protein S17
Length = 135
Score = 109 bits (272), Expect = 7e-25
Identities = 55/87 (63%), Positives = 66/87 (75%), Gaps = 4/87 (4%)
Query: 2 DFQTNKRLCDEIATIQSKRLRNKIAGYTTHLMKRIQKGPVRGISFKLQEEERERKDQYVP 61
DF TNKR+C+EIA I SK+L NKIAGY THLMKRIQ+GP RGIS LQEEERER+D YV
Sbjct: 27 DFHTNKRVCEEIAIIPSKKLCNKIAGYVTHLMKRIQRGPGRGISINLQEEERERRDNYVS 86
Query: 62 DVSALDLSHSNDVLNVDTQTAELVNSL 88
+VSALD +++ VD T E++ L
Sbjct: 87 EVSALD----QEIIEVDPDTKEMLKLL 109
>Hs20554971 [J] KOG0187 40S ribosomal protein S17
Length = 135
Score = 108 bits (271), Expect = 9e-25
Identities = 53/87 (60%), Positives = 65/87 (73%), Gaps = 4/87 (4%)
Query: 2 DFQTNKRLCDEIATIQSKRLRNKIAGYTTHLMKRIQKGPVRGISFKLQEEERERKDQYVP 61
DF TNK +C EIA I SK+L NK AGY THLMK+IQ+GPVRGIS KLQEE RER+D YVP
Sbjct: 27 DFHTNKHMCKEIAIIPSKKLHNKTAGYVTHLMKQIQRGPVRGISIKLQEEVRERRDNYVP 86
Query: 62 DVSALDLSHSNDVLNVDTQTAELVNSL 88
++SALD +++ VD T E++ L
Sbjct: 87 EISALD----QEIIEVDPDTKEMLKLL 109
>7294943 [J] KOG0187 40S ribosomal protein S17
Length = 131
Score = 105 bits (262), Expect = 1e-23
Identities = 52/88 (59%), Positives = 65/88 (73%), Gaps = 4/88 (4%)
Query: 1 MDFQTNKRLCDEIATIQSKRLRNKIAGYTTHLMKRIQKGPVRGISFKLQEEERERKDQYV 60
+DF TNKR+C+E+A I +K LRNKIAGY THLM R++ VRGIS KLQEEERER+D YV
Sbjct: 26 LDFHTNKRICEEVAIIPTKPLRNKIAGYVTHLMGRLRHSQVRGISIKLQEEERERRDNYV 85
Query: 61 PDVSALDLSHSNDVLNVDTQTAELVNSL 88
P VSAL+ D++ VD T E++ L
Sbjct: 86 PAVSALE----QDIIEVDADTKEMLKLL 109
>Hs22040880 [J] KOG0187 40S ribosomal protein S17
Length = 218
Score = 101 bits (251), Expect = 2e-22
Identities = 53/87 (60%), Positives = 63/87 (71%), Gaps = 5/87 (5%)
Query: 2 DFQTNKRLCDEIATIQSKRLRNKIAGYTTHLMKRIQKGPVRGISFKLQEEERERKDQYVP 61
DF TNK +C EIA I SK+LRNKI GY HLMKRI+KGPVRGIS KLQEEERE +D YVP
Sbjct: 111 DFYTNKCVC-EIAIILSKKLRNKIVGYVKHLMKRIRKGPVRGISIKLQEEERENRDNYVP 169
Query: 62 DVSALDLSHSNDVLNVDTQTAELVNSL 88
++S LD + + VD T E++ L
Sbjct: 170 EISVLD----QETVEVDPDTKEMLELL 192
>Hs22045746 [J] KOG0187 40S ribosomal protein S17
Length = 222
Score = 95.9 bits (237), Expect = 8e-21
Identities = 47/68 (69%), Positives = 57/68 (83%), Gaps = 2/68 (2%)
Query: 2 DFQTNKRLCDEIATIQSKRLRNKIAGYTTHLMKRIQKG--PVRGISFKLQEEERERKDQY 59
DF T+KR+C+EIA I S++L NKIAGY HL+K IQ+G PVRGIS KLQEEERE++D Y
Sbjct: 27 DFHTDKRVCEEIAIIPSEKLHNKIAGYVMHLVKWIQRGKIPVRGISIKLQEEEREKRDNY 86
Query: 60 VPDVSALD 67
VP+VSALD
Sbjct: 87 VPEVSALD 94
>Hs18564779 [J] KOG0187 40S ribosomal protein S17
Length = 109
Score = 89.0 bits (219), Expect = 1e-18
Identities = 45/84 (53%), Positives = 58/84 (68%), Gaps = 4/84 (4%)
Query: 5 TNKRLCDEIATIQSKRLRNKIAGYTTHLMKRIQKGPVRGISFKLQEEERERKDQYVPDVS 64
T +C+EI I SK+L N+ AG THL +IQ+GPVRGIS KLQEEE+ER+D YVP VS
Sbjct: 4 TQTSVCEEIPIILSKKLHNRRAGCVTHLTNQIQRGPVRGISIKLQEEEKERRDNYVPKVS 63
Query: 65 ALDLSHSNDVLNVDTQTAELVNSL 88
ALD +++ VD T E++ L
Sbjct: 64 ALD----QEIIEVDPDTKEMLKLL 83
>ECU02g0770 [J] KOG0187 40S ribosomal protein S17
Length = 120
Score = 68.9 bits (167), Expect = 1e-12
Identities = 36/87 (41%), Positives = 51/87 (58%), Gaps = 4/87 (4%)
Query: 3 FQTNKRLCDEIATIQSKRLRNKIAGYTTHLMKRIQKGPVRGISFKLQEEERERKDQYVPD 62
F N + ++A +QSK+L+N+IAGY T L K+I KG + K EEERERK+ +P
Sbjct: 28 FDHNLLVVQDVAVVQSKKLKNEIAGYLTSLYKKILKGTYNKVYIKSHEEERERKENVIPK 87
Query: 63 VSALDLSHSNDVLNVDTQTAELVNSLG 89
S LD+ D + VD T E++ G
Sbjct: 88 ESMLDV----DCVEVDDVTMEMIKRYG 110
>Hs22049992 [J] KOG0187 40S ribosomal protein S17
Length = 121
Score = 55.1 bits (131), Expect = 2e-08
Identities = 36/92 (39%), Positives = 48/92 (52%), Gaps = 10/92 (10%)
Query: 2 DFQTNKRLCDEIATIQSKRLRNKIAGYTTHLMKRIQKGPVRGISFKLQEEERERKDQYVP 61
DF +K +C EI S+ L +KIAGY THLMK I +G +S +R + YVP
Sbjct: 27 DFYMSKYVCKEITITSSRELCSKIAGYVTHLMKEI-RGSDSQVSPSSCRRKRRDRSNYVP 85
Query: 62 DVSALDLSHSNDVLNVDTQTAELVNSLGLKLP 93
+ S LD ++ VD T E+ LKLP
Sbjct: 86 EGSVLD----QEITEVDAGTKEM-----LKLP 108
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.316 0.133 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,209,766
Number of Sequences: 60738
Number of extensions: 177690
Number of successful extensions: 604
Number of sequences better than 1.0e-05: 18
Number of HSP's better than 0.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 583
Number of HSP's gapped (non-prelim): 18
length of query: 111
length of database: 30,389,216
effective HSP length: 87
effective length of query: 24
effective length of database: 25,105,010
effective search space: 602520240
effective search space used: 602520240
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)