ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII0367 good J KOG3311 Translation, ribosomal structure and biogenesis Ribosomal protein S18
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII0367 Highly similar to YML026c SP|P35271 RPS18EB
ribosomal protein S18.e.c13 {P2.224.f2.1} [INTRON]
(130 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YML026c [J] KOG3311 Ribosomal protein S18 254 2e-68
YDR450w [J] KOG3311 Ribosomal protein S18 254 2e-68
SPCC1259.01c [J] KOG3311 Ribosomal protein S18 205 1e-53
SPBC16D10.11c [J] KOG3311 Ribosomal protein S18 205 1e-53
Hs11968182 [J] KOG3311 Ribosomal protein S18 199 8e-52
7302403 [J] KOG3311 Ribosomal protein S18 192 9e-50
CE14956 [J] KOG3311 Ribosomal protein S18 191 2e-49
At4g09800 [J] KOG3311 Ribosomal protein S18 187 3e-48
At1g34030 [J] KOG3311 Ribosomal protein S18 187 3e-48
At1g22780 [J] KOG3311 Ribosomal protein S18 187 3e-48
Hs17436639 [J] KOG3311 Ribosomal protein S18 120 3e-28
ECU06g1110 [J] KOG3311 Ribosomal protein S18 111 3e-25
Hs18569198 [J] KOG3311 Ribosomal protein S18 57 8e-09
SPCC1795.07 [J] KOG3311 Ribosomal protein S18 49 2e-06
At1g77750 [J] KOG3311 Ribosomal protein S18 40 6e-04
At5g14320 [J] KOG3311 Ribosomal protein S18 40 0.001
YNL081c [J] KOG3311 Ribosomal protein S18 34 0.043
YDR129c [Z] KOG0046 Ca2+-binding actin-bundling protein (fimbrin... 32 0.28
Hs8922444 [S] KOG4659 Uncharacterized conserved protein (Rhs fam... 32 0.28
SPBC1778.06c [Z] KOG0046 Ca2+-binding actin-bundling protein (fi... 31 0.36
At5g24830 [R] KOG4197 FOG: PPR repeat 31 0.36
Hs12707562 [T] KOG3753 Circadian clock protein period 29 1.4
CE02423 [K] KOG3960 Myogenic helix-loop-helix transcription factor 29 1.4
7298275 [PT] KOG2353 L-type voltage-dependent Ca2+ channel alpha... 29 1.4
7295659 [T] KOG2269 Serine/threonine protein kinase 29 1.8
YGR186w [K] KOG2393 Transcription initiation factor IIF large su... 28 2.4
YPL129w [K] KOG3149 Transcription initiation factor IIF auxiliar... 28 4.0
Hs7524346 [F] KOG3078 Adenylate kinase 28 4.0
Hs4502013 [F] KOG3078 Adenylate kinase 28 4.0
Hs19525733 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfa... 27 5.2
7303477 [R] KOG2226 Proteins containing regions of low-complexity 27 6.9
7296698 [T] KOG0034 Ca2+/calmodulin-dependent protein phosphatas... 27 6.9
YJL034w [O] KOG0100 Molecular chaperones GRP78/BiP/KAR2 HSP70 su... 27 9.0
Hs13699824 [Z] KOG0243 Kinesin-like protein 27 9.0
At3g51090 [S] KOG3156 Uncharacterized membrane protein 27 9.0
7293764 [D] KOG1938 Protein with predicted involvement in meiosi... 27 9.0
>YML026c [J] KOG3311 Ribosomal protein S18
Length = 146
Score = 254 bits (649), Expect = 2e-68
Identities = 119/130 (91%), Positives = 127/130 (97%)
Query: 1 MLNTNVDGNINVVYALTTIRGVGRRYANLVCKKADVDLHKRAGELTQEELERIVQIMQNP 60
+LNTNVDGNI +VYALTTI+GVGRRY+NLVCKKADVDLHKRAGELTQEELERIVQIMQNP
Sbjct: 17 LLNTNVDGNIKIVYALTTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERIVQIMQNP 76
Query: 61 THYKIPAWFLNRQKDVNDGKDYHSLANNLESKLRDDLERLKKIRSHRGIRHFWGLRVRGQ 120
THYKIPAWFLNRQ D+ DGKDYH+LANN+ESKLRDDLERLKKIR+HRGIRHFWGLRVRGQ
Sbjct: 77 THYKIPAWFLNRQNDITDGKDYHTLANNVESKLRDDLERLKKIRAHRGIRHFWGLRVRGQ 136
Query: 121 HTKTTGRRRA 130
HTKTTGRRRA
Sbjct: 137 HTKTTGRRRA 146
>YDR450w [J] KOG3311 Ribosomal protein S18
Length = 146
Score = 254 bits (649), Expect = 2e-68
Identities = 119/130 (91%), Positives = 127/130 (97%)
Query: 1 MLNTNVDGNINVVYALTTIRGVGRRYANLVCKKADVDLHKRAGELTQEELERIVQIMQNP 60
+LNTNVDGNI +VYALTTI+GVGRRY+NLVCKKADVDLHKRAGELTQEELERIVQIMQNP
Sbjct: 17 LLNTNVDGNIKIVYALTTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERIVQIMQNP 76
Query: 61 THYKIPAWFLNRQKDVNDGKDYHSLANNLESKLRDDLERLKKIRSHRGIRHFWGLRVRGQ 120
THYKIPAWFLNRQ D+ DGKDYH+LANN+ESKLRDDLERLKKIR+HRGIRHFWGLRVRGQ
Sbjct: 77 THYKIPAWFLNRQNDITDGKDYHTLANNVESKLRDDLERLKKIRAHRGIRHFWGLRVRGQ 136
Query: 121 HTKTTGRRRA 130
HTKTTGRRRA
Sbjct: 137 HTKTTGRRRA 146
>SPCC1259.01c [J] KOG3311 Ribosomal protein S18
Length = 152
Score = 205 bits (522), Expect = 1e-53
Identities = 94/128 (73%), Positives = 115/128 (89%)
Query: 1 MLNTNVDGNINVVYALTTIRGVGRRYANLVCKKADVDLHKRAGELTQEELERIVQIMQNP 60
+LNTNVDG + V++A+T I+GVGRRYAN+VCKKAD+D+ KRAGELT EELERIV I+QNP
Sbjct: 15 LLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELTTEELERIVTIIQNP 74
Query: 61 THYKIPAWFLNRQKDVNDGKDYHSLANNLESKLRDDLERLKKIRSHRGIRHFWGLRVRGQ 120
+ +KIP+WFLNRQKD+NDGK + LANN++SKLR+DLERLKKI++HRG+RH LRVRGQ
Sbjct: 75 SQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTHRGLRHALDLRVRGQ 134
Query: 121 HTKTTGRR 128
HTKTTGRR
Sbjct: 135 HTKTTGRR 142
>SPBC16D10.11c [J] KOG3311 Ribosomal protein S18
Length = 152
Score = 205 bits (522), Expect = 1e-53
Identities = 94/128 (73%), Positives = 115/128 (89%)
Query: 1 MLNTNVDGNINVVYALTTIRGVGRRYANLVCKKADVDLHKRAGELTQEELERIVQIMQNP 60
+LNTNVDG + V++A+T I+GVGRRYAN+VCKKAD+D+ KRAGELT EELERIV I+QNP
Sbjct: 15 LLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELTTEELERIVTIIQNP 74
Query: 61 THYKIPAWFLNRQKDVNDGKDYHSLANNLESKLRDDLERLKKIRSHRGIRHFWGLRVRGQ 120
+ +KIP+WFLNRQKD+NDGK + LANN++SKLR+DLERLKKI++HRG+RH LRVRGQ
Sbjct: 75 SQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTHRGLRHALDLRVRGQ 134
Query: 121 HTKTTGRR 128
HTKTTGRR
Sbjct: 135 HTKTTGRR 142
>Hs11968182 [J] KOG3311 Ribosomal protein S18
Length = 152
Score = 199 bits (506), Expect = 8e-52
Identities = 91/128 (71%), Positives = 111/128 (86%)
Query: 1 MLNTNVDGNINVVYALTTIRGVGRRYANLVCKKADVDLHKRAGELTQEELERIVQIMQNP 60
+LNTN+DG + +A+T I+GVGRRYA++V +KAD+DL KRAGELT++E+ER++ IMQNP
Sbjct: 15 VLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNP 74
Query: 61 THYKIPAWFLNRQKDVNDGKDYHSLANNLESKLRDDLERLKKIRSHRGIRHFWGLRVRGQ 120
YKIP WFLNRQKDV DGK LAN L++KLR+DLERLKKIR+HRG+RHFWGLRVRGQ
Sbjct: 75 RQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQ 134
Query: 121 HTKTTGRR 128
HTKTTGRR
Sbjct: 135 HTKTTGRR 142
>7302403 [J] KOG3311 Ribosomal protein S18
Length = 152
Score = 192 bits (488), Expect = 9e-50
Identities = 88/128 (68%), Positives = 109/128 (84%)
Query: 1 MLNTNVDGNINVVYALTTIRGVGRRYANLVCKKADVDLHKRAGELTQEELERIVQIMQNP 60
++NTN+DG V A+T I+GVGRRY+N+V KKADVDL KRAGE T+EE++++V I+ NP
Sbjct: 15 IMNTNIDGKRKVGIAMTAIKGVGRRYSNIVLKKADVDLTKRAGECTEEEVDKVVTIISNP 74
Query: 61 THYKIPAWFLNRQKDVNDGKDYHSLANNLESKLRDDLERLKKIRSHRGIRHFWGLRVRGQ 120
YK+P WFLNRQKD+ DGK + ++NL+SKLRDDLERLKKIRSHRG+RH+WGLRVRGQ
Sbjct: 75 LQYKVPNWFLNRQKDIIDGKYWQLTSSNLDSKLRDDLERLKKIRSHRGLRHYWGLRVRGQ 134
Query: 121 HTKTTGRR 128
HTKTTGRR
Sbjct: 135 HTKTTGRR 142
>CE14956 [J] KOG3311 Ribosomal protein S18
Length = 154
Score = 191 bits (485), Expect = 2e-49
Identities = 86/128 (67%), Positives = 110/128 (85%)
Query: 1 MLNTNVDGNINVVYALTTIRGVGRRYANLVCKKADVDLHKRAGELTQEELERIVQIMQNP 60
++NTN+DGN V YALT I+GVGRR+A + C+KADVD++KRAGELT+E+ ++IV IMQNP
Sbjct: 15 VMNTNIDGNRKVPYALTAIKGVGRRFAFVCCRKADVDVNKRAGELTEEDFDKIVTIMQNP 74
Query: 61 THYKIPAWFLNRQKDVNDGKDYHSLANNLESKLRDDLERLKKIRSHRGIRHFWGLRVRGQ 120
+ YKIP WFLNRQKD+ DGK L+ +++KLR+DLER+KKIR HRG+RH+WGLRVRGQ
Sbjct: 75 SQYKIPNWFLNRQKDIKDGKTGQLLSTAVDNKLREDLERMKKIRLHRGLRHYWGLRVRGQ 134
Query: 121 HTKTTGRR 128
HTKTTGR+
Sbjct: 135 HTKTTGRK 142
>At4g09800 [J] KOG3311 Ribosomal protein S18
Length = 152
Score = 187 bits (475), Expect = 3e-48
Identities = 85/128 (66%), Positives = 108/128 (83%)
Query: 1 MLNTNVDGNINVVYALTTIRGVGRRYANLVCKKADVDLHKRAGELTQEELERIVQIMQNP 60
+LNTNVDG +++ALT+I+G+GRR AN+VCKKADVD++KRAGEL+ E++ ++ I+ NP
Sbjct: 15 VLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNLMTIVANP 74
Query: 61 THYKIPAWFLNRQKDVNDGKDYHSLANNLESKLRDDLERLKKIRSHRGIRHFWGLRVRGQ 120
+KIP WFLNRQKD DGK ++N L+ KLRDDLERLKKIR+HRG+RH+WGLRVRGQ
Sbjct: 75 RQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 134
Query: 121 HTKTTGRR 128
HTKTTGRR
Sbjct: 135 HTKTTGRR 142
>At1g34030 [J] KOG3311 Ribosomal protein S18
Length = 237
Score = 187 bits (475), Expect = 3e-48
Identities = 85/128 (66%), Positives = 108/128 (83%)
Query: 1 MLNTNVDGNINVVYALTTIRGVGRRYANLVCKKADVDLHKRAGELTQEELERIVQIMQNP 60
+LNTNVDG +++ALT+I+G+GRR AN+VCKKADVD++KRAGEL+ E++ ++ I+ NP
Sbjct: 28 VLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNLMTIVANP 87
Query: 61 THYKIPAWFLNRQKDVNDGKDYHSLANNLESKLRDDLERLKKIRSHRGIRHFWGLRVRGQ 120
+KIP WFLNRQKD DGK ++N L+ KLRDDLERLKKIR+HRG+RH+WGLRVRGQ
Sbjct: 88 RQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 147
Query: 121 HTKTTGRR 128
HTKTTGRR
Sbjct: 148 HTKTTGRR 155
>At1g22780 [J] KOG3311 Ribosomal protein S18
Length = 152
Score = 187 bits (475), Expect = 3e-48
Identities = 85/128 (66%), Positives = 108/128 (83%)
Query: 1 MLNTNVDGNINVVYALTTIRGVGRRYANLVCKKADVDLHKRAGELTQEELERIVQIMQNP 60
+LNTNVDG +++ALT+I+G+GRR AN+VCKKADVD++KRAGEL+ E++ ++ I+ NP
Sbjct: 15 VLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNLMTIVANP 74
Query: 61 THYKIPAWFLNRQKDVNDGKDYHSLANNLESKLRDDLERLKKIRSHRGIRHFWGLRVRGQ 120
+KIP WFLNRQKD DGK ++N L+ KLRDDLERLKKIR+HRG+RH+WGLRVRGQ
Sbjct: 75 RQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 134
Query: 121 HTKTTGRR 128
HTKTTGRR
Sbjct: 135 HTKTTGRR 142
>Hs17436639 [J] KOG3311 Ribosomal protein S18
Length = 112
Score = 120 bits (302), Expect = 3e-28
Identities = 54/98 (55%), Positives = 75/98 (76%)
Query: 1 MLNTNVDGNINVVYALTTIRGVGRRYANLVCKKADVDLHKRAGELTQEELERIVQIMQNP 60
+ TN+D + +A+T I+GVG+RYA++V +KAD+DL R GELT++E+E ++ +MQNP
Sbjct: 15 VFKTNIDEWCKITFAITAIKGVGQRYAHVVLRKADIDLTSRVGELTEDEVECVITMMQNP 74
Query: 61 THYKIPAWFLNRQKDVNDGKDYHSLANNLESKLRDDLE 98
YKIP WFLNRQKDV DGK +LAN L++KL +DLE
Sbjct: 75 HQYKIPGWFLNRQKDVKDGKYSQALANGLDNKLHEDLE 112
>ECU06g1110 [J] KOG3311 Ribosomal protein S18
Length = 153
Score = 111 bits (277), Expect = 3e-25
Identities = 55/126 (43%), Positives = 80/126 (62%)
Query: 3 NTNVDGNINVVYALTTIRGVGRRYANLVCKKADVDLHKRAGELTQEELERIVQIMQNPTH 62
NTN+DG + +ALT IRG+G R A +CK+ +DL KRAGE+ ++E++RI + +P
Sbjct: 18 NTNIDGTKRIPFALTKIRGIGIRIATAICKRLGIDLRKRAGEMGEDEMKRISDAILDPAS 77
Query: 63 YKIPAWFLNRQKDVNDGKDYHSLANNLESKLRDDLERLKKIRSHRGIRHFWGLRVRGQHT 122
IP ++N Q+D+ DG H + L++ LR +ER KK + R R GL+VRGQ T
Sbjct: 78 VGIPESYMNHQRDIIDGTTSHLIGTRLDADLRMMIERGKKNKRIRAYRLDVGLKVRGQRT 137
Query: 123 KTTGRR 128
K+ GRR
Sbjct: 138 KSNGRR 143
>Hs18569198 [J] KOG3311 Ribosomal protein S18
Length = 139
Score = 56.6 bits (135), Expect = 8e-09
Identities = 27/45 (60%), Positives = 34/45 (75%)
Query: 73 QKDVNDGKDYHSLANNLESKLRDDLERLKKIRSHRGIRHFWGLRV 117
QKD G LAN+L++KLR+DLE+LKKI + RG+ HFWGLRV
Sbjct: 95 QKDGKAGNYSQVLANDLDNKLREDLEQLKKIPACRGLHHFWGLRV 139
>SPCC1795.07 [J] KOG3311 Ribosomal protein S18
Length = 151
Score = 48.5 bits (114), Expect = 2e-06
Identities = 34/127 (26%), Positives = 54/127 (41%), Gaps = 23/127 (18%)
Query: 1 MLNTNVDGNINVVYALTTIRGVGRRYANLVCKKADVDLHKRAGELTQEELERIVQIMQNP 60
+L V+ + V +AL + G+G A +C K R ELT +L + Q++
Sbjct: 4 ILGVAVNDDKPVRFALLSFYGIGHAKAEEICAKLSFHNTLRVRELTNVQLTTLSQLLSGM 63
Query: 61 THYKIPAWFLNRQKDVNDGKDYHSLANNLESKLRDDLERLKKIRSHRGIRHFWGLRVRGQ 120
T + +L + D+ RL IR +RG+RH GL V GQ
Sbjct: 64 T-----------------------IEGDLRRQRNADISRLVNIRCYRGMRHVNGLPVNGQ 100
Query: 121 HTKTTGR 127
+T+T +
Sbjct: 101 NTRTNAK 107
>At1g77750 [J] KOG3311 Ribosomal protein S18
Length = 154
Score = 40.4 bits (93), Expect = 6e-04
Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 24/127 (18%)
Query: 3 NTNVDGNINVVYALTTIRGVGRRYANLVCKKADVDLHKRAGELTQEELERIVQIMQNPTH 62
N V N + L + G+GRR ++ V + +K A +LT +EL
Sbjct: 36 NAEVPNNKPLKTGLQEVYGIGRRKSHQVLCHLGIT-NKLARDLTGKELI----------- 83
Query: 63 YKIPAWFLNRQKDVNDGKDYHSLANNLESKLRDDLERLKKIRSHRGIRHFWGLRVRGQHT 122
D+ + H + L ++ +++RL ++ +RG RH GL RGQ T
Sbjct: 84 ------------DLREEVGQHQHGDELRRRVGSEIQRLVEVDCYRGSRHRHGLPCRGQRT 131
Query: 123 KTTGRRR 129
T R +
Sbjct: 132 STNARTK 138
>At5g14320 [J] KOG3311 Ribosomal protein S18
Length = 197
Score = 39.7 bits (91), Expect = 0.001
Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 21/128 (16%)
Query: 6 VDGNINVVYALTTIRGVGRRYANLVCKKADVDLHKRAGELTQEELERIVQIMQNPTHYKI 65
+ N + Y+L I G+GR A + ++ +K ++ +EEL + + + Y I
Sbjct: 68 IPANKRIEYSLQYIHGIGRTRARQILVDLQME-NKITKDMAEEEL---IILRDEVSKYMI 123
Query: 66 PA--WFLNRQK----DVNDGKDYHSLANNLESKLRDDLERLKKIRSHRGIRHFWGLRVRG 119
F+N DV + +++LA ++RLK+I+ +RG+RH GL RG
Sbjct: 124 EGDLAFVNELLICVVDVVQRR-FNALA----------IKRLKEIQCYRGVRHIQGLPCRG 172
Query: 120 QHTKTTGR 127
Q TK R
Sbjct: 173 QRTKNNCR 180
>YNL081c [J] KOG3311 Ribosomal protein S18
Length = 143
Score = 34.3 bits (77), Expect = 0.043
Identities = 23/107 (21%), Positives = 44/107 (40%), Gaps = 23/107 (21%)
Query: 21 GVGRRYANLVCKKADVDLHKRAGELTQEELERIVQIMQNPTHYKIPAWFLNRQKDVNDGK 80
G+G+ A +C K R +L++ ++ I + T
Sbjct: 26 GIGKTTAEKICSKLGFYPWMRMHQLSEPQIMSIASELSTMT------------------- 66
Query: 81 DYHSLANNLESKLRDDLERLKKIRSHRGIRHFWGLRVRGQHTKTTGR 127
+ + + ++D++ +KI S+ G+RH L VRGQHT+ +
Sbjct: 67 ----IEGDARAIVKDNIALKRKIGSYSGMRHTLHLPVRGQHTRNNAK 109
>YDR129c [Z] KOG0046 Ca2+-binding actin-bundling protein (fimbrin/plastin)
EF-Hand protein superfamily
Length = 642
Score = 31.6 bits (70), Expect = 0.28
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 14/74 (18%)
Query: 33 KADVDLHKRAGELTQEELERIVQIMQNPTHYKIPAWF-------------LNRQKDVNDG 79
K D+ LH L +++ E + Q ++ P + WF N KDV+DG
Sbjct: 262 KIDIKLHPELYRLLEDD-ETLEQFLRLPPEQILLRWFNYHLKQANWNRRVTNFSKDVSDG 320
Query: 80 KDYHSLANNLESKL 93
++Y L N L+ L
Sbjct: 321 ENYTILLNQLDPAL 334
>Hs8922444 [S] KOG4659 Uncharacterized conserved protein (Rhs family)
Length = 1045
Score = 31.6 bits (70), Expect = 0.28
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 9 NINVVYALTTIRGVGRRYANLVCKKADVDLHKRAGELTQEELERIVQIMQNPTHYKIPAW 68
N+ V + T + G RR+A++ + + LH R G EE RI++ Q AW
Sbjct: 922 NVTVSQSTTVVNGRTRRFADVEMQFGALALHVRYGMTLDEEKARILE--QARQRALARAW 979
Query: 69 FLNRQKDVNDGKD 81
+Q+ V DG++
Sbjct: 980 AREQQR-VRDGEE 991
>SPBC1778.06c [Z] KOG0046 Ca2+-binding actin-bundling protein (fimbrin/plastin)
EF-Hand protein superfamily
Length = 614
Score = 31.2 bits (69), Expect = 0.36
Identities = 22/74 (29%), Positives = 33/74 (43%), Gaps = 14/74 (18%)
Query: 33 KADVDLHKRAGELTQEELERIVQIMQNPTHYKIPAWF-------------LNRQKDVNDG 79
K D+ LH L +E+ E + Q ++ P + WF N KDV+DG
Sbjct: 236 KIDITLHPELYRLLEED-ETLDQFLRLPPEKILLRWFNYHLKAANWPRTVSNFSKDVSDG 294
Query: 80 KDYHSLANNLESKL 93
++Y L N L +L
Sbjct: 295 ENYTVLLNQLAPEL 308
>At5g24830 [R] KOG4197 FOG: PPR repeat
Length = 593
Score = 31.2 bits (69), Expect = 0.36
Identities = 21/71 (29%), Positives = 35/71 (48%), Gaps = 1/71 (1%)
Query: 34 ADVDLHKRAGELTQEELERIVQIMQNPTHYKIPAWFLNRQKDVNDGKDYHSLANNLESKL 93
A + + R E+ +ER I N +H WF + QKD + +D ++ N L+ L
Sbjct: 37 APIFTNLRDFEMRLSCIERPPSISGNHSHLCTEKWFSD-QKDYDQKEDPEAIFNVLDYIL 95
Query: 94 RDDLERLKKIR 104
+ L+RL +R
Sbjct: 96 KSSLDRLASLR 106
>Hs12707562 [T] KOG3753 Circadian clock protein period
Length = 1255
Score = 29.3 bits (64), Expect = 1.4
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 39 HKRAGELTQEELERIVQ-IMQNPTHYKIPAWFLNRQKDVNDGKDYHSLANNLESKLRDDL 97
HK EE E ++ ++Q+P W L D + Y + NLE+ L++D
Sbjct: 1113 HKAKMNTGMEESEHFIKCVLQDPI------WLLMADADSSVMMTYQLPSRNLEAVLKEDR 1166
Query: 98 ERLKKIR 104
E+LK ++
Sbjct: 1167 EKLKLLQ 1173
>CE02423 [K] KOG3960 Myogenic helix-loop-helix transcription factor
Length = 324
Score = 29.3 bits (64), Expect = 1.4
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 75 DVNDGKDYHSLANNLESKLRDDLERLKKI 103
D +D +D+H L N ++ + R+ L+RL +I
Sbjct: 264 DSDDDRDHHKLGNAVDLRRRNSLDRLSRI 292
>7298275 [PT] KOG2353 L-type voltage-dependent Ca2+ channel alpha2/delta
subunit
Length = 2172
Score = 29.3 bits (64), Expect = 1.4
Identities = 17/80 (21%), Positives = 36/80 (44%), Gaps = 10/80 (12%)
Query: 32 KKADVDLHKRAGELTQEELERIVQIMQNPTHYKIPAWFLNRQKDVNDGKDYHSLANNLES 91
KK ++ KR ++ ++++ HYK + N + D + N+ S
Sbjct: 2075 KKVSREIQKRNSDVKEDKIH----------HYKADKFIKNPKNGNQDSHIPKPILNSARS 2124
Query: 92 KLRDDLERLKKIRSHRGIRH 111
K++D +L I+ + G++H
Sbjct: 2125 KIKDVPLKLSAIKVNGGLKH 2144
>7295659 [T] KOG2269 Serine/threonine protein kinase
Length = 603
Score = 28.9 bits (63), Expect = 1.8
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 12/76 (15%)
Query: 34 ADVDLHKRAGELTQEELERIVQIMQNPTHYKIPAW-----------FLNRQKDVNDGKDY 82
AD+ + A +L +EL+R + ++ P P W + Q D D +DY
Sbjct: 18 ADIMSEQYAHKLHDKELQRHTEKLKRPDEQIAPVWGSQASSPPAPNAQSIQSDAEDWEDY 77
Query: 83 HSLANNLESKLRDDLE 98
+L N+ E + +D++
Sbjct: 78 SALLND-EGNVAEDIQ 92
>YGR186w [K] KOG2393 Transcription initiation factor IIF large subunit
(RAP74)
Length = 735
Score = 28.5 bits (62), Expect = 2.4
Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 1 MLNTNVDGNINVVYALTTIRGVGR-RYANLVCKKADVDLHKRAGELTQEELERIVQIMQN 59
+L+ DG+ ++ A + R +YA L +A+ + K++GE+ + ++ + I
Sbjct: 375 LLSVEDDGSFTMIPADKVYKFTARNKYATLTIDEAEKRMDKKSGEVPRWLMKHLDNIGTT 434
Query: 60 PTHY-----KIPAWFLNRQKDVNDGKDYHSLANNLESKLRDDLE 98
T Y K+ A + D +D D + + + + DD E
Sbjct: 435 TTRYDRTRRKLKAVADQQAMDEDDRDDNSEVELDYDEEFADDEE 478
>YPL129w [K] KOG3149 Transcription initiation factor IIF auxiliary subunit
Length = 244
Score = 27.7 bits (60), Expect = 4.0
Identities = 22/70 (31%), Positives = 35/70 (49%), Gaps = 5/70 (7%)
Query: 33 KADVDLHKRAGELTQEELERIVQIMQNPTHYKIPAWFLNRQKDVNDGK---DYHSLANNL 89
K VDL K A LT+ + +V ++Q T K P +N +V +G+ D +SL L
Sbjct: 174 KGSVDLEKLAFGLTKLNEDDLVGVVQMVTDNKTPE--MNVTNNVEEGEFIIDLYSLPEGL 231
Query: 90 ESKLRDDLER 99
L D +++
Sbjct: 232 LKSLWDYVKK 241
>Hs7524346 [F] KOG3078 Adenylate kinase
Length = 232
Score = 27.7 bits (60), Expect = 4.0
Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
Query: 41 RAGELTQEELERIVQIMQNPTHYKIPAWFLNRQKD-----VNDGKDYHSLANNLESKLRD 95
R E+ + +E+ + + + + IP L R+ G+ YH N + ++D
Sbjct: 106 RQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHPKSGRSYHEEFNPPKEPMKD 165
Query: 96 DLERLKKIRSHRGIRHFWGLRVRGQHTKTT 125
D+ IR +R++ HT+TT
Sbjct: 166 DITGEPLIRRSDDNEKALKIRLQAYHTQTT 195
>Hs4502013 [F] KOG3078 Adenylate kinase
Length = 239
Score = 27.7 bits (60), Expect = 4.0
Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
Query: 41 RAGELTQEELERIVQIMQNPTHYKIPAWFLNRQKD-----VNDGKDYHSLANNLESKLRD 95
R E+ + +E+ + + + + IP L R+ G+ YH N + ++D
Sbjct: 106 RQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHPKSGRSYHEEFNPPKEPMKD 165
Query: 96 DLERLKKIRSHRGIRHFWGLRVRGQHTKTT 125
D+ IR +R++ HT+TT
Sbjct: 166 DITGEPLIRRSDDNEKALKIRLQAYHTQTT 195
>Hs19525733 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfamily
Length = 1101
Score = 27.3 bits (59), Expect = 5.2
Identities = 16/48 (33%), Positives = 27/48 (55%), Gaps = 1/48 (2%)
Query: 9 NINVVYALTTIRGVGRRYANLVCKKADVDLHKRAGELTQEELERIVQI 56
N N + TI + RR A + A + LH++A L QEE+E ++++
Sbjct: 1040 NANPEVLVRTIDHLSRRQAKQIVSSAKMLLHEKAEAL-QEEVEELLRL 1086
>7303477 [R] KOG2226 Proteins containing regions of low-complexity
Length = 837
Score = 26.9 bits (58), Expect = 6.9
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 7/96 (7%)
Query: 7 DGNINVVYALTTIRGVGRRYANLVCKKADV----DLHKRAGELTQEELERIVQIMQNPTH 62
DGN N+VY + R V ANL A + K G+ L R+ Q
Sbjct: 529 DGNSNLVYTIIRKRHVFHAMANLPTDMAGIAKCLSGRKTGGKF---NLPRVPQRRTPAVS 585
Query: 63 YKIPAWFLNRQKDVNDGKDYHSLANNLESKLRDDLE 98
++P+ + + + D + N E K +DLE
Sbjct: 586 QELPSAHVPEEYNEEDEDEDEEEIINEEPKAEEDLE 621
>7296698 [T] KOG0034 Ca2+/calmodulin-dependent protein phosphatase
(calcineurin subunit B) EF-Hand superfamily protein
Length = 189
Score = 26.9 bits (58), Expect = 6.9
Identities = 20/67 (29%), Positives = 31/67 (45%), Gaps = 8/67 (11%)
Query: 43 GELTQEELERIVQIMQNPTHYKIPAWFLNRQKD--------VNDGKDYHSLANNLESKLR 94
G L++E+L RI ++ NP +I F D +N + L +N +SKL
Sbjct: 44 GTLSREDLMRIPELAINPLCERIVHSFFAESNDDRVNFRQFMNVLAHFRPLRDNKQSKLN 103
Query: 95 DDLERLK 101
E+LK
Sbjct: 104 SREEKLK 110
>YJL034w [O] KOG0100 Molecular chaperones GRP78/BiP/KAR2 HSP70 superfamily
Length = 682
Score = 26.6 bits (57), Expect = 9.0
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 32 KKADVDLHKRAGELTQEELERIVQIMQN--PTHYKIPAWFLNRQKDVNDGKDYHSLANNL 89
K + + G LTQEE++R+V+ + I A +R K N HSL N +
Sbjct: 540 KSESITITNDKGRLTQEEIDRMVEEAEKFASEDASIKAKVESRNKLENYA---HSLKNQV 596
Query: 90 ESKLRDDLERLKK 102
L + LE K
Sbjct: 597 NGDLGEKLEEEDK 609
>Hs13699824 [Z] KOG0243 Kinesin-like protein
Length = 1056
Score = 26.6 bits (57), Expect = 9.0
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Query: 17 TTIRGVGRRYANLVCKKADVDLHKRAGEL--TQEELERIVQIMQNPTHYKIPAWFLNRQK 74
T ++ V Y + + LH A +L T EE + V + + K N +
Sbjct: 471 TKLQLVKEEYITSALESTEEKLHDAASKLLNTVEETTKDVSGLHSKLDRKKAVDQHNAEA 530
Query: 75 DVNDGKDYHSLANNLESKLRDDLERLK 101
GK+ +SL NN+E ++D + K
Sbjct: 531 QDIFGKNLNSLFNNMEELIKDGSSKQK 557
>At3g51090 [S] KOG3156 Uncharacterized membrane protein
Length = 263
Score = 26.6 bits (57), Expect = 9.0
Identities = 12/35 (34%), Positives = 21/35 (59%), Gaps = 1/35 (2%)
Query: 73 QKDVNDGKDYH-SLANNLESKLRDDLERLKKIRSH 106
+ ++N D+H SL + KLR+D+ER++ H
Sbjct: 138 KSEINSSLDHHFSLLQHENEKLRNDIERIRSDIRH 172
>7293764 [D] KOG1938 Protein with predicted involvement in meiosis (GSG1)
Length = 1218
Score = 26.6 bits (57), Expect = 9.0
Identities = 23/73 (31%), Positives = 33/73 (44%), Gaps = 6/73 (8%)
Query: 29 LVCKKADVDLHKRAGELTQEELERIVQIMQNPTHYKIPAWFLNRQKDVNDGKDYHSLANN 88
LV AD + + A +L Q VQ MQ+ T K+P WF + + +N H +
Sbjct: 150 LVLSSADPQIVETAHKLGQR-----VQQMQSITPQKLPKWF-HPTEVLNSYVVLHEASQG 203
Query: 89 LESKLRDDLERLK 101
SK + E LK
Sbjct: 204 DLSKAQQGFELLK 216
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.321 0.137 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,621,063
Number of Sequences: 60738
Number of extensions: 294329
Number of successful extensions: 972
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 949
Number of HSP's gapped (non-prelim): 36
length of query: 130
length of database: 30,389,216
effective HSP length: 94
effective length of query: 36
effective length of database: 24,679,844
effective search space: 888474384
effective search space used: 888474384
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)