ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII0467 suspect: Pn K KOG1015 Transcription Transcription regulator XNP/ATRX, DEAD-box superfamily
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII0467 158455 156632 -608
(608 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
CE17314 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box su... 58 4e-08
7295248 [S] KOG4023 Uncharacterized conserved protein 58 5e-08
At1g76820 [J] KOG1144 Translation initiation factor 5B (eIF-5B) 56 2e-07
CE24463 [B] KOG1911 Heterochromatin-associated protein HP1 and r... 52 3e-06
CE04479 [B] KOG1911 Heterochromatin-associated protein HP1 and r... 50 1e-05
>CE17314 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box superfamily
Length = 1359
Score = 58.2 bits (139), Expect = 4e-08
Identities = 63/248 (25%), Positives = 104/248 (41%), Gaps = 32/248 (12%)
Query: 120 ENEAKDGERPVSKKRKKRTKDE-DGQRSDTEDXXXXXXXXXXXXXXXSEEIGSPIAKKIT 178
+++ ++ R SKK +KR K E + SD E+ + S KK+
Sbjct: 68 DDDEEESPRKSSKKSRKRAKSESESDESDEEE----------------DRKKSKSKKKVD 111
Query: 179 TKSPIKSPH-RSLIIDKFESSDDASDETGKDDSFINFSIKKTAKPKKSEFPEANSILSDI 237
K KS R+ + E SD+ ++ K S + K+T+ E E +
Sbjct: 112 QKKKEKSKKKRTTSSSEDEDSDEEREQKSKKKS--KKTKKQTSSESSEESEEERKVKKSK 169
Query: 238 PN-EQSLKTRAEFPSVTDSSLNPSTSESTPIKKKV--------EDSKPAKTLQKVEQESV 288
N E+S+K RAE +D PS +KKK ED K K +K ++ V
Sbjct: 170 KNKEKSVKKRAETSEESDEDEKPSKKSKKGLKKKAKSESESESEDEKEVKKSKKKSKKVV 229
Query: 289 KKELPEVPATELPTLREVKKLQEQVNQSIITETGEESDTTITKAETFAKDEESEE-EVPK 347
KKE E P ++ +K + S + E+SD + E+ K ++ + V K
Sbjct: 230 KKE--SESEDEAPEKKKTEKRKRSKTSSEESSESEKSDEEEEEKESSPKPKKKKPLAVKK 287
Query: 348 SATEEQSE 355
+++E+SE
Sbjct: 288 LSSDEESE 295
>7295248 [S] KOG4023 Uncharacterized conserved protein
Length = 476
Score = 57.8 bits (138), Expect = 5e-08
Identities = 59/249 (23%), Positives = 110/249 (43%), Gaps = 36/249 (14%)
Query: 120 ENEAKDGERPVSKKRKKRTKDEDGQ-RSDTEDXXXXXXXXXXXXXXXSEEIGSPIAKKIT 178
+ EA DG+ V ++ ++ ++EDG+ + +++ +EE G ++ T
Sbjct: 129 KTEAGDGDVDVKEEAAEKAENEDGKDKENSKGEDEDADEENAEQKTETEESGDKKTEEKT 188
Query: 179 TKSPIKSPHRSLIIDKFESSDDASDETGKDDSFINFSIKKTAKPKKSEFPEANSILSDIP 238
T + ++ +S +D E S+ E+ KDD + K+ K E ++ + D
Sbjct: 189 TDAEGETQEKSEEVDTKEKSEV---ESTKDDE-----VGKSEDVKDDEDEKSEIVKDDKE 240
Query: 239 NEQSLKTRAEFPSVTDSSLNPSTSESTPIKKKVEDSKPAKTLQKVEQESVKKELPEVPAT 298
N Q +K + T +S +K K+E S+ + +++ E P+V AT
Sbjct: 241 NSQDVK-------------DDKTEKSEDVKDKLEGSEETA---ETSEDADTTEKPDVEAT 284
Query: 299 --ELPTLREVKKLQEQVNQSIITETGE---------ESDTTITKAETFAKDEESEEEVPK 347
+ T E + QE+ + E E E+DT TK KDE+ EE+ +
Sbjct: 285 NDDGDTKSEKNETQEKSEEVDAVEESEAESSKEKTEENDTKGTKVNENDKDEDVEEKTEE 344
Query: 348 SATEEQSEN 356
+ATEE +++
Sbjct: 345 NATEESADS 353
>At1g76820 [J] KOG1144 Translation initiation factor 5B (eIF-5B)
Length = 1146
Score = 55.8 bits (133), Expect = 2e-07
Identities = 59/219 (26%), Positives = 95/219 (42%), Gaps = 21/219 (9%)
Query: 132 KKRKKRTKDEDGQRSDTEDXXXXXXXXXXXXXXXSEEIGSPIAKKITTKSPIKSPHRSLI 191
KK KKR K Q+ D +D + +G+ KK K S +L+
Sbjct: 58 KKGKKRNKKGTQQQQDDDDDFADKFAVEEEVVPDNAFVGNN--KKSKGKKDGGSVSFALL 115
Query: 192 IDKFESSDDASDETGKDDSFINFSIKKTAKPKKSEFPEANSILSDIPNEQSLKTRAEFPS 251
D +D +E +D+ I FS +K + KKS +S+L+ I +E+S +++
Sbjct: 116 AD-----EDNREEA--EDNDITFSGRKKSSKKKS-----SSVLASIGDEESSQSK----- 158
Query: 252 VTDSSLNPSTSESTPIKKKVEDSKPAKTLQKVEQ-ESVKKELPEVPATELPTLREVKKLQ 310
T S + ES KK + +K +TLQ+ + + + EL E PA P E K
Sbjct: 159 -TSDSKSVELVESARSKKHKKKNKSGRTLQEDDDLDKLLAELGETPAAGKPASEEEKDQA 217
Query: 311 EQVNQSIITETGEESDTTITKAETFAKDEESEEEVPKSA 349
+ + + TGEE A+ K +E E+E +A
Sbjct: 218 QPEPVAPVENTGEEETVETAAAKKKKKKKEKEKEKKAAA 256
>CE24463 [B] KOG1911 Heterochromatin-associated protein HP1 and related
CHROMO domain proteins
Length = 679
Score = 52.0 bits (123), Expect = 3e-06
Identities = 66/246 (26%), Positives = 108/246 (43%), Gaps = 38/246 (15%)
Query: 127 ERPVSKKRKKRTK---DEDGQRSDTEDXXXXXXXXXXXXXXXSEEIGSPIAKKITTKSPI 183
E SKKR K++K DE+ Q SD+E EE+ + K +KSP
Sbjct: 315 EEKSSKKRSKKSKKESDEEQQASDSE-----------------EEV---VEVKKNSKSPK 354
Query: 184 KSPHRSLIIDKF-ESSDDASDET--GKDDSFIN-FSIKKTAKPKKSEFPEANSILSDIPN 239
K+P ++ + ++ ESS D +E K S IN K+++ ++ E E+ + P
Sbjct: 355 KTPKKTAVKEESEESSGDEEEEVVKKKKSSKINKRKAKESSSDEEEEVEESPKKKTKSPR 414
Query: 240 EQSLKTRAEFPSVTDSSLNPSTSE--STPIKK----KVEDSKPAKTLQKVE---QESVKK 290
+ S K+ A+ S +SS N E +P KK K KPA ++ E E ++
Sbjct: 415 KSSKKSAAKEESEEESSDNEEEEEVDYSPKKKVKSPKKSSKKPAAKVESEEPSDNEEEEE 474
Query: 291 ELPEVPATELPTLREVKKLQEQVNQSIITETGEESDTTITKAETFAKDEESEEEVPKSAT 350
E+ E P + T R+ + +S TE+ + + K + + KSA
Sbjct: 475 EVEESPIKKDKTPRKYSRKSAAKVES--TESSGNEEEEEVEESPKKKGKTPRKSSKKSAA 532
Query: 351 EEQSEN 356
E+S+N
Sbjct: 533 VEESDN 538
>CE04479 [B] KOG1911 Heterochromatin-associated protein HP1 and related
CHROMO domain proteins
Length = 374
Score = 50.1 bits (118), Expect = 1e-05
Identities = 49/183 (26%), Positives = 82/183 (44%), Gaps = 30/183 (16%)
Query: 172 PIAKKITTKSPIKSPHRSLIIDKFESSDDASDETGKDDSFINFSIKKTAKPKKSEFPEAN 231
P+ K K KSP +S +SSD+ +E K+ S KK++K K + +
Sbjct: 175 PVKKSNKKKGSKKSPKKSAKSKDDDSSDEEEEEEVKEK-----SPKKSSKSTKRAASDDD 229
Query: 232 SILSDIPNEQSLKT-RAEFPSVTDSSLNPSTSESTPIKKKVEDSKPAKTLQKVEQESVKK 290
+ ++S K+ RAE P D E KK + SK A+T + E++ V++
Sbjct: 230 EEEEPVATKKSKKSKRAETPEEEDD----EEEEVVKTPKKTKKSKRAETPE--EEDEVEE 283
Query: 291 ELPEVPATELPTLREVKKLQEQVNQSIITETGEESDTTITKAETFAKDEESEEEVPKSAT 350
E+ + P + K + +S ET +E D +DEE E+E PKS+
Sbjct: 284 EVVKTP--------KKSKSSKSPKKSKRAETSDEED----------EDEEDEKEAPKSSK 325
Query: 351 EEQ 353
+++
Sbjct: 326 KQE 328
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.307 0.128 0.349
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,656,502
Number of Sequences: 60738
Number of extensions: 1318572
Number of successful extensions: 7180
Number of sequences better than 1.0e-05: 5
Number of HSP's better than 0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 7140
Number of HSP's gapped (non-prelim): 28
length of query: 608
length of database: 30,389,216
effective HSP length: 112
effective length of query: 496
effective length of database: 23,586,560
effective search space: 11698933760
effective search space used: 11698933760
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)