ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactII0514   suspect: HSP  R     KOG1674  General function prediction only                               Cyclin

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactII0514  176585  178165 527  
         (527 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YGL134w [R] KOG1674 Cyclin                                             93   1e-18
YPL219w [R] KOG1674 Cyclin                                             80   1e-14
At3g05330 [R] KOG1674 Cyclin                                           50   6e-06

>YGL134w [R] KOG1674 Cyclin
          Length = 433

 Score = 92.8 bits (229), Expect = 1e-18
 Identities = 47/94 (50%), Positives = 62/94 (65%), Gaps = 2/94 (2%)

Query: 392 FQMKSAPTLSISQYLDRIESKCSFPPIIYLTASFLLVTYCDIKFDTGSGKFHLENPITES 451
           F MKS PTLS + +L RI+ KC + P +YL A+FL+ T    +   G+    L+  + E 
Sbjct: 300 FYMKSKPTLSSADFLKRIQDKCEYQPTVYLVATFLIDTLFLTR--DGNNILQLKLNLQEK 357

Query: 452 MTHRLLIAFIRLAAKLLEDHVHSHSYFSKVCGIS 485
             HR++IA +RL+ KLLED VHSH YFSKVCGIS
Sbjct: 358 EVHRMIIAAVRLSTKLLEDFVHSHEYFSKVCGIS 391


>YPL219w [R] KOG1674 Cyclin
          Length = 492

 Score = 79.7 bits (195), Expect = 1e-14
 Identities = 41/94 (43%), Positives = 59/94 (62%), Gaps = 1/94 (1%)

Query: 392 FQMKSAPTLSISQYLDRIESKCSFPPIIYLTASFLLVTYCDIKFDTGSGKFHLENPITES 451
           F MK+ P+LS   ++DRI++KC F  ++YL A++LL     +  D   G   L+  + E 
Sbjct: 356 FVMKNPPSLSFRDFIDRIQNKCMFGAVVYLGATYLLQLVF-LTRDEMDGPIKLKAKLQED 414

Query: 452 MTHRLLIAFIRLAAKLLEDHVHSHSYFSKVCGIS 485
             HR++I+ IR+A KLLED VHS +Y  KV GIS
Sbjct: 415 QAHRIIISTIRIATKLLEDFVHSQNYICKVFGIS 448


>At3g05330 [R] KOG1674 Cyclin
          Length = 588

 Score = 50.4 bits (119), Expect = 6e-06
 Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 5/95 (5%)

Query: 391 IFQMKSAPTLSISQYLDRIESKCSFPPIIYLTASFLLVTYCDIKFDTGSGKFHLENPITE 450
           +F    AP+LSI +Y +RI       P+ ++ A   ++ Y      T + +      +T 
Sbjct: 440 MFHGSKAPSLSIYRYTERIHRYAQCSPVCFVAAFAYILRYLQRPEATSTAR-----RLTS 494

Query: 451 SMTHRLLIAFIRLAAKLLEDHVHSHSYFSKVCGIS 485
              HRLLI  + +AAK LE   ++++Y++K+ G+S
Sbjct: 495 LNVHRLLITSLLVAAKFLERQCYNNAYYAKIGGVS 529


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.314    0.132    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,520,325
Number of Sequences: 60738
Number of extensions: 920396
Number of successful extensions: 1878
Number of sequences better than 1.0e-05: 3
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1871
Number of HSP's gapped (non-prelim): 6
length of query: 527
length of database: 30,389,216
effective HSP length: 111
effective length of query: 416
effective length of database: 23,647,298
effective search space: 9837275968
effective search space used: 9837275968
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)