ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII0539 good C KOG2873 Energy production and conversion Ubiquinol cytochrome c reductase assembly protein CBP3
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII0539 187461 188441 327
(327 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YPL215w [C] KOG2873 Ubiquinol cytochrome c reductase assembly pr... 427 e-119
SPCC4B3.17 [C] KOG2873 Ubiquinol cytochrome c reductase assembly... 141 1e-33
7295312 [C] KOG2873 Ubiquinol cytochrome c reductase assembly pr... 84 2e-16
Hs8922714 [C] KOG2873 Ubiquinol cytochrome c reductase assembly ... 75 2e-13
CE01199 [C] KOG2873 Ubiquinol cytochrome c reductase assembly pr... 64 3e-10
>YPL215w [C] KOG2873 Ubiquinol cytochrome c reductase assembly protein CBP3
Length = 335
Score = 427 bits (1097), Expect = e-119
Identities = 199/271 (73%), Positives = 236/271 (86%)
Query: 57 APEDVRTKRRELSSSKYESASYQLPKWKEALGEFVISTLNLDMDKVRAGPIAGSYYYSIC 116
AP + L+ SKYES+ Y+LPKWKEALGE VI +LDMD+VRAGP+AGSYYY IC
Sbjct: 65 APVKTAQNKIPLAHSKYESSKYELPKWKEALGELVIRAFHLDMDRVRAGPVAGSYYYKIC 124
Query: 117 KEQGLQYEDEPLSKTAKFFYEDLKLPKTFSQWYQITILHEWMLFVRMRAMPFKYGKNYQQ 176
KEQGLQYEDEPLS+TAK+FYEDLKLP+TFSQW+QIT+LHEW+LFVRMRAMPFKYG+NYQQ
Sbjct: 125 KEQGLQYEDEPLSETAKYFYEDLKLPRTFSQWFQITVLHEWILFVRMRAMPFKYGRNYQQ 184
Query: 177 KLVDRTFADIEKRLYDEMNVHSGRITDQYLKDFNSQLRGAVFAYDEGFFSGDAALASAIW 236
KLVDRTF+DIE RL++EM V+SGRI DQYLKDFN+QLRGA+FAYDEGF + D LA+A+W
Sbjct: 185 KLVDRTFSDIELRLFEEMKVNSGRIADQYLKDFNTQLRGAIFAYDEGFATDDGTLATAVW 244
Query: 237 RNLFGGKKNIDMVHLEAMVRYVRAQLYVLSKLSDREFAMGEFKFVPPDESVEILTPEQEK 296
RNLFGG+KNIDMVHLE++VRY+ +QLYVLS+LSDREFA G+FKFVPP VE LTP+QE+
Sbjct: 245 RNLFGGRKNIDMVHLESVVRYIYSQLYVLSRLSDREFATGKFKFVPPGVKVEKLTPKQEE 304
Query: 297 SLKEKVVAKYEAVDANPNALPSEKSKFSYTN 327
LK K +AKYEA+D +P LPSE+S+ SYTN
Sbjct: 305 ELKAKTIAKYEALDKDPKTLPSERSRLSYTN 335
>SPCC4B3.17 [C] KOG2873 Ubiquinol cytochrome c reductase assembly protein CBP3
Length = 283
Score = 141 bits (356), Expect = 1e-33
Identities = 66/157 (42%), Positives = 101/157 (64%), Gaps = 1/157 (0%)
Query: 133 KFFYEDLKLPKTFSQWYQITILHEWMLFVRMRAMPFKYGKNYQQKLVDRTFADIEKRLYD 192
+F+Y+ ++P TF W+QIT LH W+L R+R +P + Q L R F D+E R++
Sbjct: 124 EFWYQKCEIPMTFQSWFQITQLHLWILHTRIRGLPKNEKVAFSQALTTRFFEDMELRIHK 183
Query: 193 EMNVHSGRITDQYLKDFNSQLRGAVFAYDEGFFSGDAALASAIWRNLFGGKKNIDMVHLE 252
+ ++S RI+ YLKD Q GA+F YD+G DA LA+++WRNLF G+ ++D+V LE
Sbjct: 184 DYRINSNRISGMYLKDLFQQQTGAIFGYDQGMLGSDAVLATSVWRNLFVGRPDVDLVILE 243
Query: 253 AMVRYVRAQLYVLSKLSDREFAMGE-FKFVPPDESVE 288
+V+++R +Y LS LS +F G+ FVPP+ES +
Sbjct: 244 TIVKFIRLNVYRLSCLSTDDFINGKGVHFVPPEESAQ 280
>7295312 [C] KOG2873 Ubiquinol cytochrome c reductase assembly protein CBP3
Length = 259
Score = 84.3 bits (207), Expect = 2e-16
Identities = 46/142 (32%), Positives = 75/142 (52%), Gaps = 5/142 (3%)
Query: 135 FYEDLKLPKTFSQWYQITILHEWMLFVRMRAMPFKYGKN---YQQKLVDRTFADIEKRLY 191
F+ D LP TF+ W+ +T LH W+L +R A + G++ + +V+ + D+ R
Sbjct: 104 FFRDFNLPNTFNSWFLVTELHVWLLLMRSMAEGSETGEDGRFLRNCIVEAMWGDVNTRA- 162
Query: 192 DEMNVHSGRITDQYLKDFNSQLRGAVFAYDEGFFSGDAALASAIWRNLFGGKKNIDMVHL 251
++ H+ T Q ++ + Q + A+ AYDEG S D LA A+WR F + D +
Sbjct: 163 KKLGAHNPSRTRQQIETLSEQFQAALIAYDEGIMSDDRVLACALWRRFFEMNCD-DYAQI 221
Query: 252 EAMVRYVRAQLYVLSKLSDREF 273
E +V+YVR Q +L L +F
Sbjct: 222 ERLVKYVRQQASMLDSLPRDQF 243
>Hs8922714 [C] KOG2873 Ubiquinol cytochrome c reductase assembly protein CBP3
Length = 299
Score = 74.7 bits (182), Expect = 2e-13
Identities = 49/151 (32%), Positives = 77/151 (50%), Gaps = 19/151 (12%)
Query: 140 KLPKTFSQWYQITILHEWMLFVRMRAMPFKYGKNYQQKLVDRTFADIEKRLYDEMNVHSG 199
++P TF+ W+ IT+LH WM VRM+ + GK + +V + D+++R G
Sbjct: 138 QMPDTFNSWFLITLLHVWMCLVRMK-QEGRSGKYMCRIIVHFMWEDVQQR---------G 187
Query: 200 RI--TDQYLKDFN-----SQLRGAVFAYDEGFFSGDAALASAIWRNLFGGKKNIDMVHLE 252
R+ + Y+ N + A+ YDEG S D LA+A+WR F +K D HLE
Sbjct: 188 RVMGVNPYILKKNMILMTNHFYAAILGYDEGILSDDHGLAAALWRTFF-NRKCEDPRHLE 246
Query: 253 AMVRYVRAQLYVLSKLSDREFAM-GEFKFVP 282
+V YVR Q+ L ++ + + GE + P
Sbjct: 247 LLVEYVRKQIQYLDSMNGEDLLLTGEVSWRP 277
>CE01199 [C] KOG2873 Ubiquinol cytochrome c reductase assembly protein CBP3
Length = 190
Score = 63.9 bits (154), Expect = 3e-10
Identities = 46/138 (33%), Positives = 76/138 (54%), Gaps = 19/138 (13%)
Query: 136 YEDLKLPKTF------SQWYQITILHEWMLFVRMRAMPFKYGKNY---QQKLVDRTFADI 186
Y+ KL + F S WY++T++H WM+ +R+ + F GK Y Q+ L+ + DI
Sbjct: 31 YDFAKLCEAFGLGDYMSSWYKLTLMHTWMVLMRLHS-EFD-GKAYMRLQRGLLSTMWLDI 88
Query: 187 EKRL---YDEMN-VHSGRITDQYLKDFNSQLRGAVFAYDEGFFSGDAALASAIWRNLFGG 242
+ RL E+N + +G+ +++ + Q F YDEGF D LA AIWR L+
Sbjct: 89 DNRLGIVSKELNQIMTGQNDMKHMHGLHLQ---TFFEYDEGFLHDDRVLAGAIWRCLYMN 145
Query: 243 KKNIDMVHLEAMVRYVRA 260
++ +D +HL +V Y+R+
Sbjct: 146 RE-VDPIHLLKVVTYMRS 162
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.317 0.133 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,065,215
Number of Sequences: 60738
Number of extensions: 720240
Number of successful extensions: 1776
Number of sequences better than 1.0e-05: 5
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1770
Number of HSP's gapped (non-prelim): 5
length of query: 327
length of database: 30,389,216
effective HSP length: 107
effective length of query: 220
effective length of database: 23,890,250
effective search space: 5255855000
effective search space used: 5255855000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)