ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactII0544   suspect: LH   HK    KOG2598  Coenzyme transport and metabolism                              Phosphomethylpyrimidine kinase
r_klactII0544   suspect: LH   HK    KOG2598  Transcription                                                  Phosphomethylpyrimidine kinase

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactII0544  190221 188674 -516 
         (516 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g22940 [HK] KOG2598 Phosphomethylpyrimidine kinase                 115   1e-25

>At1g22940 [HK] KOG2598 Phosphomethylpyrimidine kinase
          Length = 525

 Score =  115 bits (289), Expect = 1e-25
 Identities = 80/203 (39%), Positives = 115/203 (56%), Gaps = 22/203 (10%)

Query: 8   DYTLYLVTDSTMLPE-GKTLLFQVEQGLKNGVTMVQLREKDTDAKTFVAEALAVKKICDS 66
           D  LY VTDS M  +  ++++  ++  ++ G T++QLR        F+ EA A   IC S
Sbjct: 318 DLFLYAVTDSRMNKKWNRSIVDALKAAIEGGATIIQLRFDH-----FLEEAKACIDICRS 372

Query: 67  FNVPLIINDRVDVALAIDASGIHVGQEDIPIPMVRKLVGPDKIVGWSVGKVEEVDRLAEW 126
             V L+INDR+D+ALA DA G+HVGQ D+P+ +VR L+GPDKI+G S    E+  +   W
Sbjct: 373 HGVSLLINDRIDIALACDADGVHVGQSDMPVDLVRSLLGPDKIIGVSCKTPEQAHQ--AW 430

Query: 127 GPDMIDYIGVGTVFETQTKKDIKKIPMGPEGVSRILTRLEEKKCDWIRTVAIGGLHPDNI 186
             D  DYIG G VF T TK + + I  G +G+  +       +   +  VAIGG+   N 
Sbjct: 431 -KDGADYIGSGGVFPTNTKANNRTI--GLDGLKEVC------EASKLPVVAIGGIGISNA 481

Query: 187 GRVLFQAQALNGKRSVDGISIVS 209
           G V+ Q  A N K    G+++VS
Sbjct: 482 GSVM-QIDAPNLK----GVAVVS 499


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.317    0.135    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,509,180
Number of Sequences: 60738
Number of extensions: 1192850
Number of successful extensions: 2800
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2799
Number of HSP's gapped (non-prelim): 1
length of query: 516
length of database: 30,389,216
effective HSP length: 111
effective length of query: 405
effective length of database: 23,647,298
effective search space: 9577155690
effective search space used: 9577155690
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)