ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII0546 good A KOG1644 RNA processing and modification U2-associated snRNP A' protein
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII0546 190619 191344 242
(242 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YPL213w [A] KOG1644 U2-associated snRNP A' protein 221 7e-58
SPBC1861.08c [A] KOG1644 U2-associated snRNP A' protein 82 5e-16
At1g09760 [A] KOG1644 U2-associated snRNP A' protein 74 1e-13
CE20974 [A] KOG1644 U2-associated snRNP A' protein 69 5e-12
7304171 [A] KOG1644 U2-associated snRNP A' protein 69 8e-12
Hs4507121 [A] KOG1644 U2-associated snRNP A' protein 66 4e-11
Hs7106437 [T] KOG0531 Protein phosphatase 1 regulatory subunit a... 57 2e-08
>YPL213w [A] KOG1644 U2-associated snRNP A' protein
Length = 238
Score = 221 bits (563), Expect = 7e-58
Identities = 115/239 (48%), Positives = 155/239 (64%), Gaps = 2/239 (0%)
Query: 3 KLSINQVLDAPSYLADHFNGEYDTDKVVILRDASIITDTTMLKQSLDRLPGDCKVLDMTN 62
K + + V+DAP Y DHFNG+Y+ DK VILRD + TD+ + SL L +LD+TN
Sbjct: 2 KFTPSIVIDAPQYYVDHFNGKYNVDKCVILRDLQLETDSESMPSSLKHLTKPTHILDLTN 61
Query: 63 NDLVMVPPLTSRRSIHTVLLGRNRIKKLDGSLLPPNVMKVSLANNEINNLADLEGLQTAP 122
NDL+M+P L+ R IHT+LLGRN I ++DG LLP NV ++L+NN I DL+ L+ AP
Sbjct: 62 NDLIMIPDLSRRDDIHTLLLGRNNIVEVDGRLLPMNVQNLTLSNNSIRRFEDLQRLRRAP 121
Query: 123 KSLKNLCLQGNDVCYLAGYRQFAISKCPQLEVLDFQKVTRKERLQDTSVPREAQQRVPDQ 182
++LKNL L GN VC+LA YR+ + P LE LDFQ VT +ER S PR+A
Sbjct: 122 RTLKNLTLIGNQVCHLANYREHVLRLVPHLETLDFQNVTAEERKSAMSFPRQADGDTLGP 181
Query: 183 RIMDSEVSGGKKRDKHMELLGTVVKKMDEKTRNEIKEQLGNATTLDEIERLESLLTGNV 241
+++ + RDK ME++ VV KM + RNE+K+QL AT+L+EI RLE LL+G V
Sbjct: 182 --VNTAIRDNGSRDKTMEIMNLVVSKMTVERRNELKKQLAEATSLEEIARLEKLLSGGV 238
>SPBC1861.08c [A] KOG1644 U2-associated snRNP A' protein
Length = 239
Score = 82.4 bits (202), Expect = 5e-16
Identities = 59/192 (30%), Positives = 96/192 (49%), Gaps = 17/192 (8%)
Query: 58 LDMTNNDLVMVPPLTSRRSIHTVLLGRNRIKKL--DGSLLPPNVMKVSLANNEINNLADL 115
+D T+ND+ + + + T+L G NRI + D + PN+ +SLA N + +ADL
Sbjct: 46 IDFTDNDIRYLGNFPRMKRLQTLLCGNNRITAIAPDIGKVLPNLKTLSLAQNHLQEIADL 105
Query: 116 EGLQTAPKSLKNLCLQGNDVCYLAGYRQFAISKCPQLEVLDFQKVTRKERLQDTSVPREA 175
+ L + P+ L NL N V YR + I + P L +LDF++V R ERL+ E
Sbjct: 106 DPLASCPQ-LTNLSCIDNPVAQKQYYRLYLIWRIPSLHILDFERVRRNERLR----AEEV 160
Query: 176 QQRVPDQRIMDSEVSGGKKR--------DKHMELLGTVVK--KMDEKTRNEIKEQLGNAT 225
++ + + S + G K R H E + + + R +IKE + NA+
Sbjct: 161 FGQIQNPTEIASSIMGVKSRVFDLAALVQSHPEANSPITTGYTLTPEEREKIKEAIKNAS 220
Query: 226 TLDEIERLESLL 237
++ EI RLE++L
Sbjct: 221 SIAEINRLEAML 232
>At1g09760 [A] KOG1644 U2-associated snRNP A' protein
Length = 249
Score = 74.3 bits (181), Expect = 1e-13
Identities = 54/184 (29%), Positives = 97/184 (52%), Gaps = 9/184 (4%)
Query: 58 LDMTNNDLVMVPPLTSRRSIHTVLLGRNRIKKLDGSL--LPPNVMKVSLANNEINNLADL 115
+D+++N++V + + T+L+ NRI +++ +L P + + L NN + NL ++
Sbjct: 47 IDLSDNEIVKLENFPYLNRLGTLLINNNRITRINPNLGEFLPKLHSLVLTNNRLVNLVEI 106
Query: 116 EGLQTAPKSLKNLCLQGNDVCYLAGYRQFAISKCPQLEVLDFQKVTRKERLQDTSV--PR 173
+ L + PK L+ L L N++ A YR + I K L VLDF K+ KER + S+ +
Sbjct: 107 DPLASIPK-LQYLSLLDNNITKKANYRLYVIHKLKSLRVLDFIKIKAKERAEAASLFSSK 165
Query: 174 EAQQRVPDQRIMDSEVSGGKKRDKHMELLGTVVKKMDEKTRNEIKEQLGNATTLDEIERL 233
EA++ V +++ EV + ++ E V ++ IK + N+ T++EI RL
Sbjct: 166 EAEEEV--KKVSREEVKKVSETAENPETPKVVAPTAEQIL--AIKAAIINSQTIEEIARL 221
Query: 234 ESLL 237
E L
Sbjct: 222 EQAL 225
>CE20974 [A] KOG1644 U2-associated snRNP A' protein
Length = 253
Score = 69.3 bits (168), Expect = 5e-12
Identities = 50/183 (27%), Positives = 88/183 (47%), Gaps = 3/183 (1%)
Query: 57 VLDMTNNDLVMVPPLTSRRSIHTVLLGRNRIKKL--DGSLLPPNVMKVSLANNEINNLAD 114
V+D+T+ND+ + + ++T+ L NRI + D + PN+ ++L NN I L D
Sbjct: 46 VIDLTDNDIRKLDNFPTFSRLNTLYLHNNRINYIAPDIATKLPNLKTLALTNNNICELGD 105
Query: 115 LEGLQTAPKSLKNLCLQGNDVCYLAGYRQFAISKCPQLEVLDFQKVTRKERLQDTSVPRE 174
+E L K L+ + GN + + YR + I K P + V+DF +V ER + +
Sbjct: 106 IEPLAEC-KKLEYVTFIGNPITHKDNYRMYMIYKLPTVRVIDFNRVRLTEREAAKKMFKG 164
Query: 175 AQQRVPDQRIMDSEVSGGKKRDKHMELLGTVVKKMDEKTRNEIKEQLGNATTLDEIERLE 234
+ I S + + E ++ ++ R +IKE + NA +L E+ L+
Sbjct: 165 KSGKKARDAIQKSVHTEDPSEIEPNENSSGGGARLTDEDREKIKEAIKNAKSLSEVNYLQ 224
Query: 235 SLL 237
S+L
Sbjct: 225 SIL 227
>7304171 [A] KOG1644 U2-associated snRNP A' protein
Length = 265
Score = 68.6 bits (166), Expect = 8e-12
Identities = 55/193 (28%), Positives = 91/193 (46%), Gaps = 20/193 (10%)
Query: 58 LDMTNNDLVMVPPLTSRRSIHTVLLGRNRIKKLDGSL--LPPNVMKVSLANNEINNLADL 115
+D+++NDL + L + +LL NRI ++ L PN+ + L N + L+DL
Sbjct: 47 IDLSDNDLRKLDNLPHLPRLKCLLLNNNRILRISEGLEEAVPNLGSIILTGNNLQELSDL 106
Query: 116 EGLQTAPKSLKNLCLQGNDVCYLAGYRQFAISKCPQLEVLDFQKVTRKER---------L 166
E L K L+ +CL N V YR++ K PQL +LDF+K+ +K+R
Sbjct: 107 EPLVGFTK-LETICLLINPVSTKPNYREYMAYKFPQLRLLDFRKIKQKDRQAAQEFFRTK 165
Query: 167 QDTSVPRE--AQQRVPDQRIMDSEVSGGKKRDKHMELLGTVVKKMDEKTRNEIKEQLGNA 224
Q V +E + ++ + +E GK R L + + I+E + A
Sbjct: 166 QGKDVLKEISRKSKMSAAAAIAAEAGNGKGRGSEGGRLA------NPQDMQRIREAIKRA 219
Query: 225 TTLDEIERLESLL 237
++L E+ERL +L
Sbjct: 220 SSLAEVERLSQIL 232
>Hs4507121 [A] KOG1644 U2-associated snRNP A' protein
Length = 255
Score = 66.2 bits (160), Expect = 4e-11
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 14/186 (7%)
Query: 58 LDMTNNDLVMVPPLTSRRSIHTVLLGRNRIKKLDGSL--LPPNVMKVSLANNEINNLADL 115
+D ++N++ + R + T+L+ NRI ++ L P + ++ L NN + L DL
Sbjct: 47 IDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDL 106
Query: 116 EGLQTAPKSLKNLCLQGNDVCYLAGYRQFAISKCPQLEVLDFQKVTRKERLQDTSVPREA 175
+ L + KSL L + N V YR + I K PQ+ VLDFQKV KER +EA
Sbjct: 107 DPLASL-KSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER-------QEA 158
Query: 176 QQRVPDQR--IMDSEVSGGKKRDKHMELLGTVVKKMDEKTRN--EIKEQLGNATTLDEIE 231
++ +R + +++ K L T K+ + IK + NA+TL E+E
Sbjct: 159 EKMFKGKRGAQLAKDIARRSKTFNPGAGLPTDKKRGGPSPGDVEAIKNAIANASTLAEVE 218
Query: 232 RLESLL 237
RL+ LL
Sbjct: 219 RLKGLL 224
>Hs7106437 [T] KOG0531 Protein phosphatase 1 regulatory subunit and related
proteins
Length = 463
Score = 57.0 bits (136), Expect = 2e-08
Identities = 53/201 (26%), Positives = 91/201 (44%), Gaps = 15/201 (7%)
Query: 21 NGEYDTDKVVILRDASIITDTTMLKQSLDRLPGDCKVLDMTNNDLVMVPPLTSRRSIHTV 80
N E++ + L + S+ + +D+ D K+L + NN + + ++ + + +
Sbjct: 12 NAEHNDCVIFSLEELSLHQQEIERLEHIDKWCRDLKILYLQNNLIGKIENVSKLKKLEYL 71
Query: 81 LLGRNRIKKLDGSLLPPNVMKVSLANNEINNLADLEGLQTAPKSLKNLCLQGNDVCYLAG 140
L N I+K++ + K+ L N I L+ ++ LQ LK L L GN
Sbjct: 72 NLALNNIEKIENLEGCEELAKLDLTVNFIGELSSIKNLQHNIH-LKELFLMGNPCASFDH 130
Query: 141 YRQFAISKCPQLEVLDFQKVTRKER---LQDTSVPREAQQRVPDQRIMDSEVSGGKKRDK 197
YR+F ++ PQL+ LD +++ ER LQD S V + +I + E KR K
Sbjct: 131 YREFVVATLPQLKWLDGKEIEPSERIKALQDYS--------VIEPQIREQEKDHCLKRAK 182
Query: 198 HMELLGTVVKKMDEKTRNEIK 218
E +K E+ +NE K
Sbjct: 183 LKE---EAQRKHQEEDKNEDK 200
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.315 0.134 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,968,182
Number of Sequences: 60738
Number of extensions: 568514
Number of successful extensions: 2061
Number of sequences better than 1.0e-05: 7
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2044
Number of HSP's gapped (non-prelim): 9
length of query: 242
length of database: 30,389,216
effective HSP length: 103
effective length of query: 139
effective length of database: 24,133,202
effective search space: 3354515078
effective search space used: 3354515078
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)