ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII0565 suspect: LH J KOG3928 Translation, ribosomal structure and biogenesis Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactII0565  199157 197853 -435 
         (435 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YGL129c [J] KOG3928 Mitochondrial ribosome small subunit compone...   395   e-110
SPBC29A3.15c [J] KOG3928 Mitochondrial ribosome small subunit co...    83   9e-16

>YGL129c [J] KOG3928 Mitochondrial ribosome small subunit component mediator
           of apoptosis DAP3
          Length = 488

 Score =  395 bits (1014), Expect = e-110
 Identities = 200/402 (49%), Positives = 283/402 (69%), Gaps = 4/402 (0%)

Query: 35  AAAKRITPGSMYKRWQPAVATANLHKNATFVDLPMFNPNNISAA--DVHSFSEQQLQFLY 92
           ++AKR+TPGS+YK W     TA L + A  + LP+FN ++IS     V S+S +Q + L+
Sbjct: 84  SSAKRVTPGSLYKNWTNTTHTAQLQQTAVPLALPIFNFDDISKTLNKVVSYSNKQYKSLH 143

Query: 93  RLGSFKQNQFNELFTRPISLVRDSTTRKLYEALRKSENKKLVLTGEPGVGKSTLLAQLHA 152
            LGSFK++QFNELF +P+ LVR+  T    + L     KK ++TGEPGVGK+ LL+Q HA
Sbjct: 144 HLGSFKKSQFNELFQKPVCLVREDATNSFLKKLVSHPVKKFIITGEPGVGKTVLLSQAHA 203

Query: 153 HALENKGLVLTVSNSELLTNGRNDFFLDEDR--YIQPMYIKNLLTKFVKSNKKELLQSIK 210
           +A+++K +++ +S  EL  NGRNDF  D+D   +IQPMY+K L+ K +K+N   LL+SI+
Sbjct: 204 YAVDSKQIIINISYPELFLNGRNDFSYDDDLKLFIQPMYLKKLIRKILKANDPALLKSIE 263

Query: 211 LSKDYKLVHSGGKDLSVKRNVNLSAGKSTLYDLLSVKAPSRHRGAVFDAFIKELTNQTDH 270
           LSKDYK  ++  K+ SVK  V L+  K+T+ DLLSV     +RG +  A I EL+ Q+  
Sbjct: 264 LSKDYKFSNANPKNASVKPFVTLNKTKNTVLDLLSVMTHPHNRGKLMKAIIDELSVQSKV 323

Query: 271 PVYFTVDNFSHLLTTPFTAYKDTSNKNIHILKFQVGQSIFDLVSGDLQFAAKDSCVVLAT 330
           P+ FTVDNFS +LTT ++AY++T NK I+ L  Q+G+ + D++SG+ +FA  +S  +LA 
Sbjct: 324 PIMFTVDNFSKVLTTAYSAYRNTENKQIYSLDLQMGKLMMDIISGETKFANGESSTILAI 383

Query: 331 SGLDRTNRTLSIGLQKLPHDPYLTRYHYEQILAEKLLKGKVQEFEVTKLNKDEVAKLMEF 390
           SG+DRTN+TL + L K+P DPY+TRYHYE    E L KG V EFEV KLNK EV +L+++
Sbjct: 384 SGVDRTNKTLPVALGKIPVDPYVTRYHYEPKFVELLQKGNVTEFEVPKLNKQEVNELIDY 443

Query: 391 YQKAGIVLDKDLQNKTFEQLTEEKYFLSGNGNPRELLKSITL 432
           Y+++ ++LDKD+  K +E L +EKYFLSGNGNPRELLKS+ L
Sbjct: 444 YKQSNVLLDKDITGKKWENLIDEKYFLSGNGNPRELLKSLVL 485


>SPBC29A3.15c [J] KOG3928 Mitochondrial ribosome small subunit component mediator
           of apoptosis DAP3
          Length = 476

 Score = 82.8 bits (203), Expect = 9e-16
 Identities = 97/377 (25%), Positives = 167/377 (43%), Gaps = 42/377 (11%)

Query: 68  PMFNPNNISAADVHSFSEQQLQFLYRLGSFKQNQFNELFTRPISLVRDSTTRKLYEALRK 127
           P  + ++ S   +    E+ L  L   G+ ++ + +  F    SL+    T +L   L++
Sbjct: 126 PHMSWSSKSEGKMFKIPEELLNKLNGFGALEKQKKSFSFFTSASLLHRKITTELVNVLQR 185

Query: 128 SENK-----KLVLTGEPGVGKSTLLAQLHAHALENKG-LVLTVSNSELLTNGRNDFFLDE 181
           S+++     + +L G PG G+S  L Q    AL     +VL V N E   N  + +  DE
Sbjct: 186 SKDQGTKDGRFLLDGAPGSGRSIALIQAELFALSQPNFIVLPVHNCEGWVNSTSSYGYDE 245

Query: 182 D--RYIQPMYIKNLLTKFVKSNKKELLQSIKLSKDYKLVHSGGKDLSVKRNVNLSAGKST 239
               ++QP  IK  LT  +K+N  + L+ +K  + ++L+          +N  + AG   
Sbjct: 246 QLKLWVQPDLIKGFLTSVMKTN-SDKLKKLKTFESHELL----------QNECIPAGTDL 294

Query: 240 LYDLLSVKAPSRHRGAVFDAFIKELTNQT----DHPVYFTVDNFSHLLTTPFTAYKDTSN 295
           L  L  + A S    ++ + F++EL N T    +  V   +DN S  + +  T YKD  N
Sbjct: 295 LSFLHKLIASSNAPKSL-EIFLQELNNNTKSNSNMKVLLVIDNIS--ILSVVTKYKDKKN 351

Query: 296 KNIHILKFQVGQSIFDLVSGDLQFAAKDSCVVLATSGLDRTNR-TLSIGLQKLPHDPYLT 354
             +    F     +F  +SG L F      V+ ATS   R +  +L I L     +PY +
Sbjct: 352 NFLPPKDFYFINLLFKYISGSLTF--NRGTVLAATSSQPRVSTPSLDIALGVAHRNPYKS 409

Query: 355 RYHYEQILAEKLLKGKVQEFEVTKLNKDEVAKLMEFYQKAGIVLDKDLQNKTFEQLTEEK 414
               ++ + + L    +   E   L  DE  ++ME+   + + L+K + N        + 
Sbjct: 410 S---DETILDSLQSVHILNMEPYTL--DESRRMMEYLVSSNVCLEK-VDNYL------QN 457

Query: 415 YFLSGNGNPRELLKSIT 431
           + LSG GNPR+   + T
Sbjct: 458 HVLSG-GNPRKFFDACT 473


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.318    0.134    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,053,905
Number of Sequences: 60738
Number of extensions: 1004504
Number of successful extensions: 3982
Number of sequences better than 1.0e-05: 2
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3977
Number of HSP's gapped (non-prelim): 2
length of query: 435
length of database: 30,389,216
effective HSP length: 109
effective length of query: 326
effective length of database: 23,768,774
effective search space: 7748620324
effective search space used: 7748620324
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)