ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII0574 good J KOG3492 Translation, ribosomal structure and biogenesis Ribosome biogenesis protein NIP7
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII0574 201752 202294 181
(181 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YPL211w [J] KOG3492 Ribosome biogenesis protein NIP7 339 1e-93
SPCC320.11c [J] KOG3492 Ribosome biogenesis protein NIP7 279 1e-75
Hs7705437 [J] KOG3492 Ribosome biogenesis protein NIP7 224 4e-59
CE08687 [J] KOG3492 Ribosome biogenesis protein NIP7 210 1e-54
7301217 [J] KOG3492 Ribosome biogenesis protein NIP7 194 7e-50
ECU10g0670 [J] KOG3492 Ribosome biogenesis protein NIP7 142 3e-34
Hs17434413 [J] KOG3492 Ribosome biogenesis protein NIP7 119 2e-27
At4g15770 [J] KOG3492 Ribosome biogenesis protein NIP7 97 9e-21
>YPL211w [J] KOG3492 Ribosome biogenesis protein NIP7
Length = 181
Score = 339 bits (869), Expect = 1e-93
Identities = 162/181 (89%), Positives = 177/181 (97%)
Query: 1 MRQLTEEETKVIFEKLAGYIGRNIVYLVDNKDQPHVFRLQKDRVYYVPEHIANLATSVAR 60
MRQLTEEETKV+FEKLAGYIGRNI +LVDNK+ PHVFRLQKDRVYYVP+H+A LATSVAR
Sbjct: 1 MRQLTEEETKVVFEKLAGYIGRNISFLVDNKELPHVFRLQKDRVYYVPDHVAKLATSVAR 60
Query: 61 PNLMSLGLCMGKFTKTGKFRLHITSLSVLAQYAKYKVWIKPNGEMPFLYGNHVLKAHVGK 120
PNLMSLG+C+GKFTKTGKFRLHITSL+VLA++AKYK+WIKPNGEMPFLYGNHVLKAHVGK
Sbjct: 61 PNLMSLGICLGKFTKTGKFRLHITSLTVLAKHAKYKIWIKPNGEMPFLYGNHVLKAHVGK 120
Query: 121 MSDDIPEHAGVIVFSMHDVPLGFGVSAKSTSESRDLQPTSIVAFRQADIGEYLRDEDTLF 180
MSDDIPEHAGVIVF+M+DVPLGFGVSAKSTSESR++QPT IVAFRQADIGEYLRDEDTLF
Sbjct: 121 MSDDIPEHAGVIVFAMNDVPLGFGVSAKSTSESRNMQPTGIVAFRQADIGEYLRDEDTLF 180
Query: 181 T 181
T
Sbjct: 181 T 181
>SPCC320.11c [J] KOG3492 Ribosome biogenesis protein NIP7
Length = 180
Score = 279 bits (714), Expect = 1e-75
Identities = 129/180 (71%), Positives = 152/180 (83%)
Query: 1 MRQLTEEETKVIFEKLAGYIGRNIVYLVDNKDQPHVFRLQKDRVYYVPEHIANLATSVAR 60
MR LT EETK FEKLA YIG+NI +L+D D PH FRLQKDRVYYV E +ATSVAR
Sbjct: 1 MRPLTHEETKTFFEKLAQYIGKNITHLIDRPDDPHCFRLQKDRVYYVSERAMKMATSVAR 60
Query: 61 PNLMSLGLCMGKFTKTGKFRLHITSLSVLAQYAKYKVWIKPNGEMPFLYGNHVLKAHVGK 120
NLMSLG+C GKFTKT KFRLHIT+L +AQYA+YK+W+K NGEMPFLYGNHVLKAHVG+
Sbjct: 61 QNLMSLGICFGKFTKTNKFRLHITALDYIAQYARYKIWVKSNGEMPFLYGNHVLKAHVGR 120
Query: 121 MSDDIPEHAGVIVFSMHDVPLGFGVSAKSTSESRDLQPTSIVAFRQADIGEYLRDEDTLF 180
++DD P+H GV+++SM+D PLGFGV+A+ST E R L+PT+IVAF QAD+GEYLRDEDTLF
Sbjct: 121 ITDDTPQHQGVVIYSMNDTPLGFGVTARSTLELRRLEPTAIVAFHQADVGEYLRDEDTLF 180
>Hs7705437 [J] KOG3492 Ribosome biogenesis protein NIP7
Length = 180
Score = 224 bits (572), Expect = 4e-59
Identities = 107/179 (59%), Positives = 136/179 (75%)
Query: 1 MRQLTEEETKVIFEKLAGYIGRNIVYLVDNKDQPHVFRLQKDRVYYVPEHIANLATSVAR 60
MR LTEEET+V+FEK+A YIG N+ LVD D + FRL DRVYYV E I LA +++
Sbjct: 1 MRPLTEEETRVMFEKIAKYIGENLQLLVDRPDGTYCFRLHNDRVYYVSEKIMKLAANISG 60
Query: 61 PNLMSLGLCMGKFTKTGKFRLHITSLSVLAQYAKYKVWIKPNGEMPFLYGNHVLKAHVGK 120
L+SLG C GKFTKT KFRLH+T+L LA YAKYKVWIKP E FLYGNHVLK+ +G+
Sbjct: 61 DKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWIKPGAEQSFLYGNHVLKSGLGR 120
Query: 121 MSDDIPEHAGVIVFSMHDVPLGFGVSAKSTSESRDLQPTSIVAFRQADIGEYLRDEDTL 179
++++ ++ GV+V+SM D+PLGFGV+AKST + R + P +IV F QADIGEY+R E+TL
Sbjct: 121 ITENTSQYQGVVVYSMADIPLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEYVRHEETL 179
>CE08687 [J] KOG3492 Ribosome biogenesis protein NIP7
Length = 180
Score = 210 bits (534), Expect = 1e-54
Identities = 98/179 (54%), Positives = 129/179 (71%)
Query: 1 MRQLTEEETKVIFEKLAGYIGRNIVYLVDNKDQPHVFRLQKDRVYYVPEHIANLATSVAR 60
MR LTEEET ++F KLA +IG N+ L+D D + FR K+RVYY E++ A +AR
Sbjct: 1 MRPLTEEETSLVFAKLASFIGDNVSMLIDRNDGDYCFRNHKERVYYCSENLMRQAACIAR 60
Query: 61 PNLMSLGLCMGKFTKTGKFRLHITSLSVLAQYAKYKVWIKPNGEMPFLYGNHVLKAHVGK 120
L+S G C+GKFTK+ KF L IT+L LA YAK+KVW+KPN E FLYGN++LK+ + +
Sbjct: 61 EPLLSFGTCLGKFTKSKKFHLQITALDYLAPYAKFKVWLKPNAEQQFLYGNNILKSGIAR 120
Query: 121 MSDDIPEHAGVIVFSMHDVPLGFGVSAKSTSESRDLQPTSIVAFRQADIGEYLRDEDTL 179
M+D P HAG++V+SM DVPLGFGVSAK TS+S+ PT++V Q D+GEYLR+E L
Sbjct: 121 MTDGTPTHAGIVVYSMTDVPLGFGVSAKGTSDSKRADPTALVVLHQCDLGEYLRNESHL 179
>7301217 [J] KOG3492 Ribosome biogenesis protein NIP7
Length = 180
Score = 194 bits (492), Expect = 7e-50
Identities = 88/180 (48%), Positives = 128/180 (70%)
Query: 1 MRQLTEEETKVIFEKLAGYIGRNIVYLVDNKDQPHVFRLQKDRVYYVPEHIANLATSVAR 60
M++L++E K++FE L+ YIG N+ +L+D D + FR KDRVYYV E I L+
Sbjct: 1 MKRLSDERAKILFEHLSKYIGTNVKHLIDRPDGTYCFREHKDRVYYVSERILKLSECFGY 60
Query: 61 PNLMSLGLCMGKFTKTGKFRLHITSLSVLAQYAKYKVWIKPNGEMPFLYGNHVLKAHVGK 120
L+ +G C GKF+KT K + HIT+L LA YA+YKVW+KP+ E FLYGNH+ K +G+
Sbjct: 61 KQLVCVGTCFGKFSKTNKLKFHITALYYLAPYAQYKVWVKPSFEQQFLYGNHIPKTGLGR 120
Query: 121 MSDDIPEHAGVIVFSMHDVPLGFGVSAKSTSESRDLQPTSIVAFRQADIGEYLRDEDTLF 180
++++ ++ GV+V+SM+D+PLGFGV A+ST++ + P + V F Q+DIGEY+R EDTLF
Sbjct: 121 ITENAGQYQGVVVYSMNDLPLGFGVLARSTTDCKTADPMTTVCFHQSDIGEYIRAEDTLF 180
>ECU10g0670 [J] KOG3492 Ribosome biogenesis protein NIP7
Length = 176
Score = 142 bits (357), Expect = 3e-34
Identities = 72/176 (40%), Positives = 114/176 (63%), Gaps = 3/176 (1%)
Query: 1 MRQLTEEETKVIFEKLAGYIGRNIVYLVDNKDQPHVFRLQKDRVYYVPEHIANLATSVAR 60
MR L EE K + +KL +IG N+ ++ +D+ L RV + E + + ++R
Sbjct: 1 MRDLKPEEEKEVLKKLRFFIGDNVHRILSGEDR---LFLHNQRVMILSERMRAATSMISR 57
Query: 61 PNLMSLGLCMGKFTKTGKFRLHITSLSVLAQYAKYKVWIKPNGEMPFLYGNHVLKAHVGK 120
NL +G +GKFTK+G FRL + SL++L+++A +KVWIK + EM ++YGN+ LK+HV +
Sbjct: 58 KNLGMVGTVIGKFTKSGSFRLGVASLNLLSRWAIHKVWIKNSAEMNYVYGNNALKSHVFR 117
Query: 121 MSDDIPEHAGVIVFSMHDVPLGFGVSAKSTSESRDLQPTSIVAFRQADIGEYLRDE 176
+S+ IP ++GV VF+ HDVPLGFG++A S + ++ RQ+D GEY+R+E
Sbjct: 118 ISEGIPINSGVFVFNQHDVPLGFGITALSPQGYSAAKGHALAILRQSDTGEYVRNE 173
>Hs17434413 [J] KOG3492 Ribosome biogenesis protein NIP7
Length = 133
Score = 119 bits (299), Expect = 2e-27
Identities = 71/179 (39%), Positives = 90/179 (49%), Gaps = 47/179 (26%)
Query: 1 MRQLTEEETKVIFEKLAGYIGRNIVYLVDNKDQPHVFRLQKDRVYYVPEHIANLATSVAR 60
MR LTEEET V+FEK+ YI N+ L+D D+ + F L DRV YV E I L +++
Sbjct: 1 MRPLTEEETHVMFEKIVKYIRENLQLLLDRPDRTYCFWLHNDRVDYVSEKIVKLDANISG 60
Query: 61 PNLMSLGLCMGKFTKTGKFRLHITSLSVLAQYAKYKVWIKPNGEMPFLYGNHVLKAHVGK 120
L+SLG C GK TKT KFR
Sbjct: 61 DKLVSLGTCFGKVTKTHKFRF--------------------------------------- 81
Query: 121 MSDDIPEHAGVIVFSMHDVPLGFGVSAKSTSESRDLQPTSIVAFRQADIGEYLRDEDTL 179
GV+V+SM D+PLGFGV+AKST + R + P +IV QADIGEY + E+TL
Sbjct: 82 --------TGVVVYSMADIPLGFGVAAKSTQDCRKVDPMAIVVLHQADIGEYAQHEETL 132
>At4g15770 [J] KOG3492 Ribosome biogenesis protein NIP7
Length = 75
Score = 97.4 bits (241), Expect = 9e-21
Identities = 47/75 (62%), Positives = 55/75 (72%)
Query: 105 MPFLYGNHVLKAHVGKMSDDIPEHAGVIVFSMHDVPLGFGVSAKSTSESRDLQPTSIVAF 164
M FLYGNHVLK +G+++D I GV+VFSM DVPLGFG++AKST + R L P IV
Sbjct: 1 MSFLYGNHVLKGGLGRITDSIVPGDGVVVFSMSDVPLGFGIAAKSTQDCRKLDPNGIVVL 60
Query: 165 RQADIGEYLRDEDTL 179
QADIGEYLR ED L
Sbjct: 61 HQADIGEYLRGEDDL 75
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.321 0.138 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,579,757
Number of Sequences: 60738
Number of extensions: 425163
Number of successful extensions: 883
Number of sequences better than 1.0e-05: 8
Number of HSP's better than 0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 874
Number of HSP's gapped (non-prelim): 9
length of query: 181
length of database: 30,389,216
effective HSP length: 100
effective length of query: 81
effective length of database: 24,315,416
effective search space: 1969548696
effective search space used: 1969548696
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)