ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII0580 suspect: %id U KOG2376 Intracellular trafficking, secretion, and vesicular transport Signal recognition particle, subunit Srp72
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII0580 204517 202604 -638
(638 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YPL210c [U] KOG2376 Signal recognition particle subunit Srp72 166 8e-41
At1g67680 [U] KOG2376 Signal recognition particle subunit Srp72 65 3e-10
At1g67650 [U] KOG2376 Signal recognition particle subunit Srp72 65 4e-10
>YPL210c [U] KOG2376 Signal recognition particle subunit Srp72
Length = 646
Score = 166 bits (421), Expect = 8e-41
Identities = 159/657 (24%), Positives = 282/657 (42%), Gaps = 44/657 (6%)
Query: 4 AKD-LVSLLTKLNVK-DEKVHIDAIQTKYDTL-SKTLGEEETSRAILNELLDSEQYSAII 60
AKD L +LL++LN++ + H QT L S + R L ++ ++Y +
Sbjct: 8 AKDNLTNLLSQLNIQLSQDEHSQVEQTCVKLLDSGCENPADVFRRCLVAVIQQDKYQKAL 67
Query: 61 KAHRKIPVLFSPSATAKPNSFSAYEQYACYKVGKEKKFASDSDVSLIGDELMSLETLTDS 120
+K F F+ + Y YK+ +F + + D L+ +S
Sbjct: 68 HYLKK----FKHIDDKYGRKFALEKLYIFYKLNMPDEFNTLYTAIITDDLDTVLKKDIES 123
Query: 121 QRQLLHIYAQNLLXXXXXXXAYEVYQKLLAIPH-ELDNTAELACNKEAALSEIPELVGNV 179
R +LH+ AQ A+++YQ L + + D+ EL+CN+ LS EL+
Sbjct: 124 LRGILHVRAQYCYKNGLYQEAFKIYQHLASHNEKDQDSQIELSCNERVPLSVATELMNRS 183
Query: 180 TLDKEFD--TYDISFNKACQLCSIRNHEAALEYAERAFNLAQEDDAAVEDLRAIKLQISY 237
L D +YD+ FN++ + S+ ++ A+E E+A A ++ D+ IKLQ+S+
Sbjct: 184 PLVTPMDESSYDLLFNESFIMASVGKYDKAIELLEKALQGAT-NEGYQNDINTIKLQLSF 242
Query: 238 IHQVLGHKEEAKSLLKEIVENSADQNDLNTVLAKANLKSYVSISKFKDNLPLLLRELDTP 297
+ Q++G ++K +LK +++ + + ++ + NL ++V SK+ N LLLREL+
Sbjct: 243 VLQMVGKTAQSKEILKGLLQELKADSPFS-LICQNNLNAFVDFSKYNTNFNLLLRELNVE 301
Query: 298 TL-TGKHXXXXXXXXXXXXXNIELLKVFSNNKAGKNKTSVHSIANKFYTENVGNVLYEPY 356
L T N+ L++F+N K ++ + +K Y++ V NV E Y
Sbjct: 302 KLNTFNLQTFTHEQWSNIQRNVLFLRLFNNVKIHSQESLLSRTFDK-YSKLVDNVTLESY 360
Query: 357 ENQADALCKKLDRSAKAEIKNEQKLLIQTLVCVQVLVKAGNLDKALVVAEKVWNHFPMEE 416
+ QA L ++ + ++ L+ +Q+L+ + A+ + E N
Sbjct: 361 KTQAKKLYHHTTKTILSGTDGSTIGIL--LLTIQLLIIEKEWENAIRIGELFLNESWKSS 418
Query: 417 LSKY---KRILSYVLLNLYD--ATNXXXXXXXXXXXXXXXYSEQVLEEDVSFWEFIAFKF 471
K+ + I+ Y+L LY N ++E++ FW+ + F+
Sbjct: 419 FEKFNDSQAIVCYILFELYKIKGRNNSKSVLLKKLGSVRVQLSGKIQENIPFWKHVGFEL 478
Query: 472 LEQGQTQKAERIFRALA--AKDNNSASAKYIAKADASDLGDYXXXXXXXXXXXXXXXXSL 529
L G ++++ + R ++ +K + + +D+ D+ L
Sbjct: 479 LSMGNAKESKALLREISNFSKGDADVLVDRVVSSDSLDIAQ------GIDLVRDIDIDKL 532
Query: 530 LNAGISVFENGKSKS-----SVIKSTXXXXXXXXXXXXXXXNF----DESKKLDPERWLP 580
+ G+ E+ +S S ++ F D SK DPERWLP
Sbjct: 533 IQLGVKPLESSAKRSKNTAVSKVQKRKVLELKKKRKIKRLEKFLQGRDTSKLPDPERWLP 592
Query: 581 LKERSTYRVSKKNISGKNTQGFKASKASEAKLDITXXXXXXXXXXXTSNAKSKNSRK 637
L++RSTYR KK K TQG +K SE LDI+ T N K KN +K
Sbjct: 593 LRDRSTYRPKKKQQGAKQTQGGAMNKKSEQALDIS------KKGKPTVNKKPKNKKK 643
>At1g67680 [U] KOG2376 Signal recognition particle subunit Srp72
Length = 664
Score = 65.1 bits (157), Expect = 3e-10
Identities = 142/664 (21%), Positives = 244/664 (36%), Gaps = 79/664 (11%)
Query: 15 NVKDEKVHIDAIQTKYDTLSKTLGEEETSRAILNELLDSEQYSAIIKAHRKIPVLFSP-- 72
++KD K +A++ LS +E+ R + L+ +++ + KI S
Sbjct: 30 HIKDTKYE-EAVKVADQVLSIVPTDEDAIRCKVVALIKDDKFDDYLIKDVKINGALSVIN 88
Query: 73 SATAKPNSFSAYEQYACYKVGKEKKFASDSDVSLIGDELMSLETLTDSQRQLLHIYAQNL 132
S P ++ Y Y+V K D +L+ L LE TD+ L + AQ L
Sbjct: 89 SFQKLPIDLGFHKAYCLYRVNK-------LDEALVC--LKGLERDTDT----LVLEAQIL 135
Query: 133 LXXXXXXXAYEVYQKLLAIPHE-LDNTAELACNKEAALSEIPELVGNVTLDKEFDTYDIS 191
+VYQKL E L+ S++ + + ++ + K +++++
Sbjct: 136 YRLGKADACVDVYQKLTKSQIETLEVNLVAGLISAGKASQVQKTLESLKI-KPTSSFELA 194
Query: 192 FNKACQLCSIRNHEAALEYAERAFNLAQE----DDAAVED------LRAIKLQISYIHQV 241
+N AC L N+ A + A + QE DD A+ D L I +Q++Y+ Q+
Sbjct: 195 YNTACSLIENNNYADAEQLLLTARRIGQETLNDDDIALTDEEIEIELAPIAVQLAYVQQI 254
Query: 242 LGHKEEAKSLLKEIVE-NSADQNDLNTVLAK-ANLKSYVSIS---------KFKDNLPLL 290
LG +E+ S + ++ N AD+ L + LK + IS K KD+
Sbjct: 255 LGQTQESTSSYVDFIKRNLADEPSLAVAVNNLVALKGFKDISDGLRKFDLLKDKDSQTFQ 314
Query: 291 LRELDTPTLTGKHXXXXXXXXXXXXXNIELLKVFSNNKAGKNKTSVHSIANKFYTENVGN 350
L + L+ KH +L + NK + + ++ F +
Sbjct: 315 LSQALDAKLSQKHKEAIYAN--------RVLLLLHANKMDQARELCAALPGMFPESIIPT 366
Query: 351 VLYEPYENQADALCKKLDRSAKAEIKNEQKLLIQTLVCVQVLVKAGNLDKALVVAEKVWN 410
+L QA L ++ +++AKAE +LL Q K L +A + A
Sbjct: 367 LL------QAAVLVRE-NKAAKAE-----ELLGQCAEKFPEKSKLVLLARAQIAASASHP 414
Query: 411 HFPMEELSKYKRILSY-----VLLNLYDATNXXXXXXXXXXXXXXXYSEQVLEED---VS 462
H E LSK I ++ L + +S + E V
Sbjct: 415 HVAAESLSKIPDIQHLPATVATIVALKERAGDNDGAAAVLDSAIKWWSNSMTESSKLRVL 474
Query: 463 FWEFIAFKFLEQGQTQKAERIFRALAAKDNNSASA-----KYIAKADASDLGDYXXXXXX 517
E AFK L GQ ++A R++ + K++NS A +A+ + Y
Sbjct: 475 MPEAAAFK-LRHGQEEEASRLYEEI-VKNHNSTDALVGLVTTLARVNVEKAESYEKQLKP 532
Query: 518 XXXXXXXXXXSLLNA-GISVFENGKSKSSVIK-STXXXXXXXXXXXXXXXNFDESK---K 572
L G E + SS + FD +
Sbjct: 533 LPGLKAVDVDKLEKTYGAKPIEGAAASSSQEEVKKEKAKRKRKRKPKYPKGFDPANPGPP 592
Query: 573 LDPERWLPLKERSTYRVSKKNISGKNTQGFKASKASEAKLDITXXXXXXXXXXXTSNAKS 632
DPERWLP +ERS+Y+ +K+ +G + + + + NA +
Sbjct: 593 PDPERWLPRRERSSYKPKRKDKRAAQIRGSQGAVTKDKQEAAPSTSKSNQVASSKGNAPA 652
Query: 633 KNSR 636
+S+
Sbjct: 653 PSSK 656
>At1g67650 [U] KOG2376 Signal recognition particle subunit Srp72
Length = 651
Score = 64.7 bits (156), Expect = 4e-10
Identities = 143/671 (21%), Positives = 249/671 (36%), Gaps = 82/671 (12%)
Query: 5 KDLVSLLTKLNVKDEKVHIDAIQTKYDTLSKTLGEEETSRAILNELLDSEQYSAIIKAHR 64
+DL + L K ++KD K +A++ LS +E+ R + L+ +++ +
Sbjct: 17 EDLFTSLHK-HIKDTKYE-EAVKVADQVLSIVPTDEDAIRCKVVALIKDDKFDDYLIKDV 74
Query: 65 KIPVLFSPSATAKPNSFSAYEQYACYKVGKEKKFASDSDVSLIGDELMSLETLTDSQRQL 124
KI S + P ++ Y Y+ K + + L+ L+ L + L
Sbjct: 75 KINGALSV-INSFPIDLGFHKAYCLYRENK------------LDEALVCLKGLERESKTL 121
Query: 125 LHIYAQNLLXXXXXXXAYEVYQKLLAIPHELDNTAELACNKEAAL---SEIPELVGNVTL 181
L + AQ L +VYQKL +L + N AAL + +++ ++ +
Sbjct: 122 L-LEAQILNCLGKVDACVDVYQKLNKSGIKL-----IEVNLVAALIRAGKASQVLESLKI 175
Query: 182 DKEFDTYDISFNKACQLCSIRNHEAALEYAERAFNLAQE--------DDAAVEDLRAIKL 233
+ TY +++N AC L N+ A + A + QE DD L I +
Sbjct: 176 -RPTTTYQLAYNTACSLIENSNYVDAEQLLLTAMRIGQETLTEGDYSDDYIETQLAPISV 234
Query: 234 QISYIHQVLGHKEEAKSLLKEIVE-NSADQNDLNTVLAKANLKSYVSIS---------KF 283
Q++Y+ QVLG +E+KS +I++ N AD++ V LK IS K
Sbjct: 235 QLAYVQQVLGQTQESKSSYVDIIKRNLADESLALAVNNLVALKGSKDISDGLRKFDLLKD 294
Query: 284 KDNLPLLLRELDTPTLTGKHXXXXXXXXXXXXXNIELLKVFSNNKAGKNKTSVHSIANKF 343
KD+ L + L+ KH +L + NK + + ++ F
Sbjct: 295 KDSQNFQLSQELDAKLSHKHKEAIYAN--------RVLLLLHANKMDQARELCATLPGMF 346
Query: 344 YTENVGNVLYEPYENQADALCKKLDRSAKAEIKNEQKLLIQTLVCVQVLVKAGNLDKALV 403
+ +L QA L ++ +++AKAE +LL Q K L +A +
Sbjct: 347 PESVIPTLL------QAAVLVRE-NKAAKAE-----ELLGQCAENFPEKSKLVLLARAQI 394
Query: 404 VAEKVWNHFPMEELSKYKRILSY-----VLLNLYDATNXXXXXXXXXXXXXXXYSEQVLE 458
A H E LSK I ++ L + +S+ + +
Sbjct: 395 AASASHPHVAAESLSKIPDIQHLPATVATIVALRERAGDNDGATAVLDSAIRWWSDSMTD 454
Query: 459 ED---VSFWEFIAFKFLEQGQTQKAERIFRALAAKDNNSASA-----KYIAKADASDLGD 510
+ + AFK L GQ ++A R++ + K++NS A +A+ +
Sbjct: 455 SNMLRILMPVAAAFK-LRHGQEEEASRLYEEI-VKNHNSTDALVGLVTTLARVNVEKAEA 512
Query: 511 YXXXXXXXXXXXXXXXXSL-LNAGISVFENGKSKSSVIKSTXXXXXXXXXXXXXXXNFD- 568
Y +L +G E + S + FD
Sbjct: 513 YEKQLKPLPGLKAVDVDNLEKTSGAKPIEGISAASLSQEEVKKEKVKRKRKPKYPKGFDL 572
Query: 569 --ESKKLDPERWLPLKERSTYRVSKKNISGKNTQGFKASKASEAKLDITXXXXXXXXXXX 626
DPERWLP +ERS+YR +K+ +G + + + +
Sbjct: 573 ENSGPTPDPERWLPRRERSSYRPKRKDKRAAQIRGSQGALTKVKQEEAPSTSKSKQAAIS 632
Query: 627 TSNAKSKNSRK 637
+NA +S K
Sbjct: 633 KANAAGPSSSK 643
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.312 0.128 0.344
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,495,505
Number of Sequences: 60738
Number of extensions: 1141553
Number of successful extensions: 2666
Number of sequences better than 1.0e-05: 3
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2657
Number of HSP's gapped (non-prelim): 6
length of query: 638
length of database: 30,389,216
effective HSP length: 113
effective length of query: 525
effective length of database: 23,525,822
effective search space: 12351056550
effective search space used: 12351056550
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)