ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII0588 check: MH A KOG0335 RNA processing and modification ATP-dependent RNA helicase
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII0588 205046 206797 584
(584 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YGL064c [A] KOG0335 ATP-dependent RNA helicase 533 e-151
At3g06980 [A] KOG0331 ATP-dependent RNA helicase 116 1e-25
YGL078c [A] KOG0331 ATP-dependent RNA helicase 113 7e-25
At5g14610 [A] KOG0331 ATP-dependent RNA helicase 111 3e-24
At3g01540 [A] KOG0331 ATP-dependent RNA helicase 110 5e-24
YNR038w [A] KOG0350 DEAD-box ATP-dependent RNA helicase 110 8e-24
7296646 [A] KOG0331 ATP-dependent RNA helicase 109 1e-23
SPBC17D1.06 [A] KOG0331 ATP-dependent RNA helicase 108 3e-23
At1g55150 [A] KOG0331 ATP-dependent RNA helicase 107 4e-23
At5g63120 [A] KOG0331 ATP-dependent RNA helicase 107 7e-23
At1g31970 [A] KOG0331 ATP-dependent RNA helicase 107 7e-23
CE26887 [A] KOG0333 U5 snRNP-like RNA helicase subunit 106 9e-23
CE24878 [A] KOG0333 U5 snRNP-like RNA helicase subunit 106 9e-23
At3g58570 [A] KOG0335 ATP-dependent RNA helicase 106 9e-23
At2g42520 [A] KOG0335 ATP-dependent RNA helicase 105 2e-22
7295314 [A] KOG0331 ATP-dependent RNA helicase 105 2e-22
7293060 [A] KOG0334 RNA helicase 105 2e-22
Hs19743937 [A] KOG0338 ATP-dependent RNA helicase 104 3e-22
7293941 [A] KOG0344 ATP-dependent RNA helicase 104 4e-22
7304081 [A] KOG0338 ATP-dependent RNA helicase 103 6e-22
CE23832 [A] KOG0341 DEAD-box protein abstrakt 102 2e-21
CE28031 [A] KOG0334 RNA helicase 101 3e-21
CE27427 [A] KOG0334 RNA helicase 101 3e-21
At2g40700 [A] KOG0348 ATP-dependent RNA helicase 101 3e-21
CE18785 [A] KOG0331 ATP-dependent RNA helicase 101 4e-21
YNL112w [A] KOG0331 ATP-dependent RNA helicase 100 6e-21
SPBP8B7.16c [A] KOG0331 ATP-dependent RNA helicase 100 6e-21
SPBC21H7.04 [A] KOG0348 ATP-dependent RNA helicase 100 6e-21
CE01341 [J] KOG0327 Translation initiation factor 4F helicase su... 100 6e-21
Hs5453840_1 [A] KOG0331 ATP-dependent RNA helicase 100 8e-21
YLL008w [A] KOG0338 ATP-dependent RNA helicase 100 1e-20
At2g33730 [A] KOG0333 U5 snRNP-like RNA helicase subunit 100 1e-20
SPCC285.03 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 99 1e-20
7299061 [A] KOG0335 ATP-dependent RNA helicase 99 1e-20
At4g09730 [A] KOG0331 ATP-dependent RNA helicase 99 2e-20
SPAC22F3.08c [A] KOG0344 ATP-dependent RNA helicase 99 2e-20
At3g06480 [A] KOG0331 ATP-dependent RNA helicase 99 2e-20
SPCC63.11 [A] KOG0333 U5 snRNP-like RNA helicase subunit 98 4e-20
Hs4759278 [A] KOG0333 U5 snRNP-like RNA helicase subunit 97 7e-20
Hs17474597 [A] KOG0333 U5 snRNP-like RNA helicase subunit 97 7e-20
ECU09g1640 [A] KOG0326 ATP-dependent RNA helicase 97 7e-20
7298459 [A] KOG0333 U5 snRNP-like RNA helicase subunit 97 7e-20
Hs11321632 [A] KOG0339 ATP-dependent RNA helicase 97 9e-20
At1g20920 [A] KOG0334 RNA helicase 97 9e-20
YDR243c [A] KOG0333 U5 snRNP-like RNA helicase subunit 96 1e-19
SPAC31A2.07c [A] KOG0337 ATP-dependent RNA helicase 96 1e-19
7298204 [A] KOG0335 ATP-dependent RNA helicase 96 1e-19
Hs15316941 [A] KOG0344 ATP-dependent RNA helicase 96 2e-19
At4g15850 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 96 2e-19
7290853 [A] KOG0331 ATP-dependent RNA helicase 96 2e-19
Hs9507237 [A] KOG0335 ATP-dependent RNA helicase 95 3e-19
At2g47330 [A] KOG0339 ATP-dependent RNA helicase 95 3e-19
7296165 [A] KOG0330 ATP-dependent RNA helicase 95 3e-19
Hs4758138 [A] KOG0331 ATP-dependent RNA helicase 95 3e-19
Hs13514813 [A] KOG0335 ATP-dependent RNA helicase 94 6e-19
7296891 [A] KOG0341 DEAD-box protein abstrakt 94 6e-19
Hs21071032 [A] KOG0341 DEAD-box protein abstrakt 94 7e-19
CE27728 [A] KOG0346 RNA helicase 93 1e-18
CE25121 [A] KOG0335 ATP-dependent RNA helicase 93 1e-18
YLR276c [A] KOG0346 RNA helicase 92 2e-18
SPBC4F6.07c [A] KOG0347 RNA helicase 92 2e-18
Hs7662318 [A] KOG0334 RNA helicase 92 3e-18
At1g77050 [A] KOG0337 ATP-dependent RNA helicase 92 3e-18
Hs13787206 [A] KOG0342 ATP-dependent RNA helicase pitchoune 91 4e-18
CE09012 [A] KOG0335 ATP-dependent RNA helicase 91 4e-18
7294064 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 91 4e-18
7291960_2 [A] KOG0337 ATP-dependent RNA helicase 91 4e-18
Hs13514809 [A] KOG0335 ATP-dependent RNA helicase 91 5e-18
CE06239 [A] KOG0344 ATP-dependent RNA helicase 91 5e-18
SPCC10H11.01 [A] KOG0334 RNA helicase 91 6e-18
Hs13514831 [A] KOG0343 RNA Helicase 91 6e-18
ECU02g0670 [A] KOG0335 ATP-dependent RNA helicase 91 6e-18
At1g72730 [J] KOG0327 Translation initiation factor 4F helicase ... 91 6e-18
SPAC1093.05 [A] KOG0343 RNA Helicase 90 8e-18
Hs4503529 [J] KOG0327 Translation initiation factor 4F helicase ... 90 8e-18
CE07736 [A] KOG0335 ATP-dependent RNA helicase 90 8e-18
YBR237w [A] KOG0334 RNA helicase 90 1e-17
Hs13129006 [A] KOG0331 ATP-dependent RNA helicase 90 1e-17
CE17559 [A] KOG0339 ATP-dependent RNA helicase 90 1e-17
At5g51280 [A] KOG0341 DEAD-box protein abstrakt 90 1e-17
At3g13920 [J] KOG0327 Translation initiation factor 4F helicase ... 90 1e-17
SPBC543.06c [A] KOG0340 ATP-dependent RNA helicase 89 1e-17
SPAC30D11.03 [A] KOG0338 ATP-dependent RNA helicase 89 1e-17
Hs22057246 [A] KOG0336 ATP-dependent RNA helicase 89 1e-17
7299006 [A] KOG0345 ATP-dependent RNA helicase 89 1e-17
CE28369 [A] KOG0335 ATP-dependent RNA helicase 89 2e-17
CE24451 [A] KOG0335 ATP-dependent RNA helicase 89 2e-17
At4g34910 [A] KOG0346 RNA helicase 89 2e-17
YDL031w [A] KOG0337 ATP-dependent RNA helicase 89 2e-17
Hs4503531 [J] KOG0327 Translation initiation factor 4F helicase ... 89 2e-17
At3g58510 [A] KOG0335 ATP-dependent RNA helicase 89 2e-17
7294797 [A] KOG0339 ATP-dependent RNA helicase 89 2e-17
At3g22310 [A] KOG0331 ATP-dependent RNA helicase 88 3e-17
CE22474 [A] KOG0336 ATP-dependent RNA helicase 88 4e-17
At1g54270 [J] KOG0327 Translation initiation factor 4F helicase ... 88 4e-17
Hs17505907 [A] KOG0348 ATP-dependent RNA helicase 87 5e-17
ECU08g1080 [A] KOG0331 ATP-dependent RNA helicase 87 9e-17
At4g33370 [A] KOG0341 DEAD-box protein abstrakt 87 9e-17
Hs13775232 [A] KOG0331 ATP-dependent RNA helicase 86 1e-16
CE26853 [A] KOG0342 ATP-dependent RNA helicase pitchoune 86 2e-16
At3g19760 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 86 2e-16
SPBC12C2.06 [A] KOG0332 ATP-dependent RNA helicase 85 3e-16
SPAC1F5.10 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1... 85 3e-16
CE29052 [A] KOG0335 ATP-dependent RNA helicase 85 3e-16
CE27030 [A] KOG0338 ATP-dependent RNA helicase 85 3e-16
CE11190 [A] KOG0347 RNA helicase 85 3e-16
7300808 [A] KOG0342 ATP-dependent RNA helicase pitchoune 85 3e-16
YMR290c [A] KOG0342 ATP-dependent RNA helicase pitchoune 84 5e-16
YFL002c [A] KOG0345 ATP-dependent RNA helicase 84 5e-16
7299019 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 84 5e-16
Hs4758140 [A] KOG0326 ATP-dependent RNA helicase 84 6e-16
At1g71370 [A] KOG0345 ATP-dependent RNA helicase 84 6e-16
ECU02g1520 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1... 84 8e-16
CE25231 [A] KOG0343 RNA Helicase 84 8e-16
At5g63630 [A] KOG0342 ATP-dependent RNA helicase pitchoune 84 8e-16
CE00337 [A] KOG0330 ATP-dependent RNA helicase 83 1e-15
7303950 [A] KOG0340 ATP-dependent RNA helicase 83 1e-15
YPL119c [A] KOG0335 ATP-dependent RNA helicase 83 1e-15
YOR204w [A] KOG0335 ATP-dependent RNA helicase 83 1e-15
YOR046c [A] KOG0332 ATP-dependent RNA helicase 83 1e-15
ECU10g0440 [A] KOG0330 ATP-dependent RNA helicase 83 1e-15
CE09901 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 83 1e-15
7293369 [A] KOG0343 RNA Helicase 83 1e-15
YKR059w [J] KOG0327 Translation initiation factor 4F helicase su... 82 2e-15
YJL138c [J] KOG0327 Translation initiation factor 4F helicase su... 82 2e-15
Hs7661920 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 82 2e-15
YJL033w [A] KOG0343 RNA Helicase 82 2e-15
YDR194c [A] KOG0342 ATP-dependent RNA helicase pitchoune 82 2e-15
YDL160c [A] KOG0326 ATP-dependent RNA helicase 82 2e-15
SPBC691.04 [A] KOG0342 ATP-dependent RNA helicase pitchoune 82 2e-15
Hs10346129 [A] KOG0336 ATP-dependent RNA helicase 82 2e-15
YDR021w [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 82 3e-15
At3g61240 [A] KOG0326 ATP-dependent RNA helicase 82 3e-15
7295505 [A] KOG0346 RNA helicase 82 3e-15
SPAC1F7.02c [A] KOG0342 ATP-dependent RNA helicase pitchoune 81 4e-15
CE00839 [A] KOG0326 ATP-dependent RNA helicase 81 4e-15
CE28485 [K] KOG4284 DEAD box protein 80 7e-15
7298989 [A] KOG0336 ATP-dependent RNA helicase 80 7e-15
At3g22330 [A] KOG0331 ATP-dependent RNA helicase 80 9e-15
SPCC1494.06c [A] KOG0346 RNA helicase 80 1e-14
At3g18600 [A] KOG0342 ATP-dependent RNA helicase pitchoune 80 1e-14
SPCC1795.11 [A] KOG0335 ATP-dependent RNA helicase 79 1e-14
CE03821 [A] KOG0345 ATP-dependent RNA helicase 79 2e-14
At1g51380 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 79 2e-14
YKR024c [A] KOG0348 ATP-dependent RNA helicase 79 2e-14
YHR169w [A] KOG0340 ATP-dependent RNA helicase 79 2e-14
CE27553 [A] KOG0337 ATP-dependent RNA helicase 79 2e-14
At5g54910 [A] KOG0343 RNA Helicase 78 3e-14
YBR142w [A] KOG0347 RNA helicase 77 6e-14
At1g63250 [A] KOG0342 ATP-dependent RNA helicase pitchoune 77 6e-14
YHR065c [A] KOG0330 ATP-dependent RNA helicase 77 7e-14
Hs8922976 [A] KOG0330 ATP-dependent RNA helicase 77 7e-14
Hs20149629 [A] KOG0330 ATP-dependent RNA helicase 77 7e-14
At3g09720 [A] KOG0344 ATP-dependent RNA helicase 76 1e-13
At3g09620 [A] KOG0334 RNA helicase 76 1e-13
Hs19923595 [A] KOG0337 ATP-dependent RNA helicase 75 2e-13
At3g53110 [A] KOG0332 ATP-dependent RNA helicase 75 2e-13
Hs21327697 [A] KOG0332 ATP-dependent RNA helicase 75 3e-13
Hs13787209 [A] KOG0331 ATP-dependent RNA helicase 75 3e-13
7298752 [A] KOG0330 ATP-dependent RNA helicase 75 4e-13
SPBC24C6.02 [A] KOG0345 ATP-dependent RNA helicase 74 6e-13
At5g08610 [A] KOG0342 ATP-dependent RNA helicase pitchoune 74 6e-13
7293348 [A] KOG0348 ATP-dependent RNA helicase 74 8e-13
HsM7019399 [A] KOG0332 ATP-dependent RNA helicase 73 1e-12
At5g05450 [A] KOG0345 ATP-dependent RNA helicase 73 1e-12
At5g65900 [A] KOG0342 ATP-dependent RNA helicase pitchoune 72 2e-12
CE11402 [A] KOG0334 RNA helicase 71 5e-12
Hs8922886 [A] KOG0332 ATP-dependent RNA helicase 70 7e-12
At2g45810 [A] KOG0326 ATP-dependent RNA helicase 70 7e-12
YGL171w [A] KOG0344 ATP-dependent RNA helicase 70 9e-12
Hs6005743 [A] KOG0332 ATP-dependent RNA helicase 70 9e-12
SPAC823.08c [A] KOG0330 ATP-dependent RNA helicase 70 1e-11
7294824 [K] KOG4284 DEAD box protein 70 1e-11
CE03025 [A] KOG0329 ATP-dependent RNA helicase 69 2e-11
CE29051 [A] KOG0335 ATP-dependent RNA helicase 68 3e-11
Hs14251212 [K] KOG4284 DEAD box protein 68 4e-11
At1g16280 [A] KOG0340 ATP-dependent RNA helicase 68 4e-11
At5g62190 [A] KOG0331 ATP-dependent RNA helicase 67 7e-11
SPAC17G6.14c [A] KOG0329 ATP-dependent RNA helicase 67 1e-10
7297629 [A] KOG0326 ATP-dependent RNA helicase 65 4e-10
Hs9506931 [A] KOG0346 RNA helicase 64 6e-10
Hs20336298 [A] KOG0348 ATP-dependent RNA helicase 63 1e-09
At1g59990 [A] KOG0333 U5 snRNP-like RNA helicase subunit 63 1e-09
At2g07750 [A] KOG0342 ATP-dependent RNA helicase pitchoune 62 2e-09
7297048 [J] KOG0327 Translation initiation factor 4F helicase su... 62 2e-09
SPAC1006.07 [J] KOG0327 Translation initiation factor 4F helicas... 61 4e-09
CE27641 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 61 5e-09
CE25531 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 60 7e-09
SPBC776.09 [A] KOG0326 ATP-dependent RNA helicase 60 1e-08
At1g12770_1 [J] KOG0327 Translation initiation factor 4F helicas... 58 3e-08
Hs20551983 [A] KOG0345 ATP-dependent RNA helicase 57 6e-08
CE23814 [A] KOG0340 ATP-dependent RNA helicase 57 1e-07
7302399 [A] KOG0347 RNA helicase 56 2e-07
At3g16840 [A] KOG0347 RNA helicase 55 4e-07
YER172c [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily 54 5e-07
Hs22054507 [A] KOG0342 ATP-dependent RNA helicase pitchoune 54 5e-07
At4g16630 [A] KOG0338 ATP-dependent RNA helicase 54 5e-07
Hs17475661 [J] KOG0327 Translation initiation factor 4F helicase... 53 1e-06
CE06825 [A] KOG0335 ATP-dependent RNA helicase 53 1e-06
CE27336 [A] KOG0334 RNA helicase 53 1e-06
Hs4826686 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 52 2e-06
ECU10g1680 [A] KOG0343 RNA Helicase 52 3e-06
Hs9506609 [A] KOG0340 ATP-dependent RNA helicase 51 4e-06
CE15167 [A] KOG0335 ATP-dependent RNA helicase 51 4e-06
At5g60990 [A] KOG0330 ATP-dependent RNA helicase 51 4e-06
At4g00660 [A] KOG0326 ATP-dependent RNA helicase 51 4e-06
ECU10g0690 [A] KOG0345 ATP-dependent RNA helicase 51 6e-06
ECU07g1060 [A] KOG0344 ATP-dependent RNA helicase 50 9e-06
>YGL064c [A] KOG0335 ATP-dependent RNA helicase
Length = 561
Score = 533 bits (1373), Expect = e-151
Identities = 282/588 (47%), Positives = 390/588 (65%), Gaps = 37/588 (6%)
Query: 2 QPVFSRFPYASKSGFISLASRGYAVSRNSGSSIKSNLRSKPRADTRWNTKAKPPVKNRKS 61
+PV S P S + + R YA + S L S P + N K K K +K
Sbjct: 6 KPVIS--PQWSFPVLLKIGVRSYAGGPRTKHKGNSPLASVPTGSSNKNRKQK--AKGKKG 61
Query: 62 NGKGXXXXXXXXXXXAKPSXXXXXXXXXYGEYGKLSEGDPKILERSKRLVSKINDFSQLK 121
N K +GEYG L + ++ + +L+ KI++F QL
Sbjct: 62 NKKNDPDQAFN-----------------FGEYGGLKKDVEMNMDSTNKLIQKISNFDQLL 104
Query: 122 ILPEVRDKLMEVISSESLLNKNLLDVKYNPKENNVQEFKKHLKPSPIQTTAIYQTSKTLM 181
ILP VRD + E+IS ESL L D + EN + PSPIQT AI + SK LM
Sbjct: 105 ILPPVRDAVKEIISKESL---KLQDSRKKTSENII--------PSPIQTVAIKRISKNLM 153
Query: 182 DPQLQVRLIAAETGSGKTMAYLIPLVDYLKRTEMENPS-WETLKDKAIVRSIILLPTHEL 240
DP+LQ+ IAAETGSGKTMAYLIPL+DYLKR E+E P WETL+ ++RSIIL+PTHEL
Sbjct: 154 DPKLQIHAIAAETGSGKTMAYLIPLIDYLKRQELETPELWETLRKNVLIRSIILVPTHEL 213
Query: 241 VEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNR 300
V+QVY+TVSK + LG++++KWD +SY+ +E +K RIDI+VTTPGK+L+LF+I M+ R
Sbjct: 214 VDQVYETVSKTKTLLGLNSFKWDKATSYRDLLENIKNRIDILVTTPGKLLNLFSIRMITR 273
Query: 301 PDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFCSATIPKEFQKTITRLF 360
PD++LS+V F+V+DEADTLLD+SW+E+++S IK + N+NH++FCSATIP+EF KT+ RLF
Sbjct: 274 PDKVLSKVGFVVLDEADTLLDRSWLEETHSAIKRIPNINHLIFCSATIPQEFNKTMQRLF 333
Query: 361 PTVGVIASPNLHKINHKNQIKLINADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVI 420
PTV I +P LHK+ K+IN+ ++P+KGSK KALAQ LY+I+ D+ +PGFEKR +I
Sbjct: 334 PTVVPIMTPRLHKLPFALDFKVINSALSPFKGSKIKALAQTLYAISNDDTEPGFEKRCII 393
Query: 421 FVNEKENVPLVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTE 480
FVNEK+NVP + L ++GH+ + LTG D+ EER EKI PF+ PP+ ++ ++ +
Sbjct: 394 FVNEKKNVPEIVNLLNKKFGHNAIGLTGEDTFEERSEKIMPFLSPPRPLSEVVAQSTSPP 453
Query: 481 NTV-TMKIPNSNIVIEEIPEDNE---AFVESTLKVLVTTDVLARGINFRGCRYVVLYDIP 536
++ +IP+SNIVI ++ N A +L VLVTTD++ARG+NF+G R VVLYD+P
Sbjct: 454 TSLKKFEIPDSNIVIGKLKNTNSNGTAPSNKSLHVLVTTDLMARGLNFKGVRNVVLYDVP 513
Query: 537 NTPVDLVHRVGRTGRMNQKGSVFIITGKRVKNWVKAIPSIVSKNVSIS 584
T +DL+HRVGRT RM Q G VF++T + K+W KA+P I+ K+ +S
Sbjct: 514 KTSIDLIHRVGRTARMKQGGRVFMLTDSKTKSWAKALPKIIKKHQRLS 561
>At3g06980 [A] KOG0331 ATP-dependent RNA helicase
Length = 781
Score = 116 bits (290), Expect = 1e-25
Identities = 105/388 (27%), Positives = 173/388 (44%), Gaps = 58/388 (14%)
Query: 189 LIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTV 248
+IA ++GSGKT+AYL+P++ L+ E++ S R I+L+PT EL QV
Sbjct: 415 IIADQSGSGKTLAYLVPVIQRLREEELQGHS---KSSPGCPRVIVLVPTAELASQVLANC 471
Query: 249 SKL-EPALGMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQ 307
+ + + + G + +E L+ +D+++ TPG+ L N ++ LS
Sbjct: 472 RSISKSGVPFRSMVVTGGFRQRTQLENLEQGVDVLIATPGRFTYLMNEGILG-----LSN 526
Query: 308 VKFLVMDEADTLLDKSWVEDSYSTIKHMQNLN-HVLFCSATIPKEFQKTITRLFPTVGVI 366
++ ++DE D L E + + + + LF +AT+P E + +FP V+
Sbjct: 527 LRCAILDEVDILFGDDEFEAALQNLINSSPVTAQYLFVTATLPLEIYNKLVEVFPDCEVV 586
Query: 367 ASPNLHKINHKNQIKLI------NADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVI 420
P +H++++ + L+ NA+ P + K A L I +N + +I
Sbjct: 587 MGPRVHRVSNALEEFLVDCSGDDNAEKTPETAFQNKKTA--LLQIMEENP----VSKTII 640
Query: 421 FVNEKENVPLVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTE 480
F N+ E K+ N + +ER + PF ++ E
Sbjct: 641 FCNKIE----TCRKVEN--------IFKRVDRKERQLHVLPF-----------HAALSQE 677
Query: 481 NTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPV 540
+ +T N PE+N F LV TD +RGI+F G +VVL+D P P
Sbjct: 678 SRLT----NMQEFTSSQPEENSLF-------LVCTDRASRGIDFSGVDHVVLFDFPRDPS 726
Query: 541 DLVHRVGRTGR-MNQKGSVFI-ITGKRV 566
+ V RVGRT R KG FI + GK+V
Sbjct: 727 EYVRRVGRTARGARGKGKAFIFVVGKQV 754
>YGL078c [A] KOG0331 ATP-dependent RNA helicase
Length = 523
Score = 113 bits (283), Expect = 7e-25
Identities = 113/456 (24%), Positives = 198/456 (42%), Gaps = 76/456 (16%)
Query: 127 RDKLMEVISSESLLNKNLLDVKYNPKENNVQ-EFKKHLKPSPIQTTA--IYQTSKTLMDP 183
++ + V S L + LL Y ++++Q E K KP+PIQ A + K ++
Sbjct: 96 KENEIAVEDSLDLALRPLLSFDYLSLDSSIQAEISKFPKPTPIQAVAWPYLLSGKDVVG- 154
Query: 184 QLQVRLIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQ 243
AETGSGKT A+ +P + +L + K ++ +++ PT EL Q
Sbjct: 155 -------VAETGSGKTFAFGVPAISHLMNDQK----------KRGIQVLVISPTRELASQ 197
Query: 244 VYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDR 303
+Y + L +GM G LK + ++V TPG++L L V+
Sbjct: 198 IYDNLIVLTDKVGMQCCCVYGGVPKDEQRIQLK-KSQVVVATPGRLLDLLQEGSVD---- 252
Query: 304 ILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQ-NLNHVLFCSATIPKEFQKTITRLFPT 362
LSQV +LV+DEAD +L+K + ED + I+ + L +AT PKE ++ +
Sbjct: 253 -LSQVNYLVLDEADRMLEKGFEEDIKNIIRETDASKRQTLMFTATWPKEVRELASTFMNN 311
Query: 363 VGVIASPNLHKINHKNQIKLINADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIFV 422
++ N ++ +I I ++ +G + K +L + + + P ++V+IF
Sbjct: 312 PIKVSIGNTDQLTANKRITQI-VEVVDPRGKERK----LLELLKKYHSGPKKNEKVLIFA 366
Query: 423 NEKENVPLVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENT 482
K+ V L G++V A+ G+ S ++R + + F
Sbjct: 367 LYKKEAARVERNL-KYNGYNVAAIHGDLSQQQRTQALNEF-------------------- 405
Query: 483 VTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDL 542
K SN+ L+ TDV ARG++ + V+ P T D
Sbjct: 406 ---KSGKSNL-------------------LLATDVAARGLDIPNVKTVINLTFPLTVEDY 443
Query: 543 VHRVGRTGRMNQKGSVFIITGKRVKNWVKAIPSIVS 578
VHR+GRTGR Q G+ + ++ K+ + ++++
Sbjct: 444 VHRIGRTGRAGQTGTAHTLFTEQEKHLAGGLVNVLN 479
>At5g14610 [A] KOG0331 ATP-dependent RNA helicase
Length = 713
Score = 111 bits (277), Expect = 3e-24
Identities = 106/399 (26%), Positives = 164/399 (40%), Gaps = 72/399 (18%)
Query: 165 PSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETLK 224
PSPIQ Q+ M + V + A+TGSGKT+ YLIP +L+R ++ T+
Sbjct: 252 PSPIQA----QSWPIAMQNRDIVAI--AKTGSGKTLGYLIPGFMHLQRIHNDSRMGPTI- 304
Query: 225 DKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRIDIMVT 284
++L PT EL Q+ K + + G+ ++ ++ +DI+V
Sbjct: 305 -------LVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVA 357
Query: 285 TPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFC 344
TPG++ + + ++ L QV +LV+DEAD +LD + + + L
Sbjct: 358 TPGRLNDILEMKRIS-----LHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMY 412
Query: 345 SATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQIKLINADMAPYKGSKTKALAQILYS 404
+AT PKE +K L + N+ ++ I +AP + K L QIL S
Sbjct: 413 TATWPKEVRKIAADLLVNPAQVNIGNVDELVANKSITQTIEVLAPME--KHSRLEQILRS 470
Query: 405 INRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSVEERLEKIKPFMD 464
+PG +++IF + K +A L +G A+ G+ S ER + + F
Sbjct: 471 -----QEPG--SKIIIFCSTKRMCDQLARNLTRTFG--AAAIHGDKSQAERDDVLNQFR- 520
Query: 465 PPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINF 524
VLV TDV ARG++
Sbjct: 521 -----------------------------------------SGRTPVLVATDVAARGLDV 539
Query: 525 RGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKGSVFIITG 563
+ R VV YD PN D VHR+GRTGR G + G
Sbjct: 540 KDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFG 578
>At3g01540 [A] KOG0331 ATP-dependent RNA helicase
Length = 619
Score = 110 bits (276), Expect = 5e-24
Identities = 101/372 (27%), Positives = 154/372 (41%), Gaps = 66/372 (17%)
Query: 192 AETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSKL 251
A+TGSGKT+ YLIP +L+R ++ T+ ++L PT EL Q+ + K
Sbjct: 202 AKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTI--------LVLSPTRELATQIQEEAVKF 253
Query: 252 EPALGMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQVKFL 311
+ + G+ + L+ DI+V TPG++ + + ++ L Q+ +L
Sbjct: 254 GRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRIS-----LRQISYL 308
Query: 312 VMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFCSATIPKEFQKTITRLFPTVGVIASPNL 371
V+DEAD +LD + +K + L +AT PK +K L + N+
Sbjct: 309 VLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNV 368
Query: 372 HKINHKNQIKLINADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIFVNEKENVPLV 431
++ I +AP + K + L QIL S +PG +V+IF + K +
Sbjct: 369 DELVANKSITQHIEVVAPME--KQRRLEQILRS-----QEPG--SKVIIFCSTKRMCDQL 419
Query: 432 ATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSN 491
L Q+G A+ G+ S ER N
Sbjct: 420 TRNLTRQFG--AAAIHGDKSQPER----------------------------------DN 443
Query: 492 IVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGR 551
++ F VLV TDV ARG++ + R VV YD PN D VHR+GRTGR
Sbjct: 444 VL--------NQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGR 495
Query: 552 MNQKGSVFIITG 563
G F G
Sbjct: 496 AGATGQAFTFFG 507
>YNR038w [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 629
Score = 110 bits (274), Expect = 8e-24
Identities = 105/383 (27%), Positives = 176/383 (45%), Gaps = 56/383 (14%)
Query: 189 LIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTV 248
L+ A TGSGKT+AY IP+V L + ++ +R II++PT L+ QVY T+
Sbjct: 231 LVNAATGSGKTLAYSIPIVQTLFKRQINR-----------LRCIIIVPTKLLINQVYTTL 279
Query: 249 SKLEPALGMHTYKWDAGSSYKGFVEALKG-RIDIMVTTPGKILSLFNISMVNRPDRILSQ 307
+KL + +S K + L DI++TTPG+++ N+ +N L
Sbjct: 280 TKLTQGTSLIVSIAKLENSLKDEHKKLSNLEPDILITTPGRLVDHLNMKSIN-----LKN 334
Query: 308 VKFLVMDEADTLLDKSWVEDSYSTIKHMQ---------NLNHVLFCSATIPKEFQKT--I 356
+KFL++DEAD LL++S+ + H++ N+ ++F SAT+ +K +
Sbjct: 335 LKFLIIDEADRLLNQSFQGWCPKLMSHLKTDKLDTLPGNVIKMIF-SATLTTNTEKLNGL 393
Query: 357 TRLFPTVGVIASPNLHKINHKNQIKLINADMAPYKGSKTKALAQILYSINRDNIDPGFEK 416
P + + + L+++ +K IN P S K L +LYSI +
Sbjct: 394 NLYKPKLFLKQTDKLYQLPNKLNEFNINI---PTAKSVYKPLI-LLYSICQFMAHSPIAA 449
Query: 417 RVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEK 476
+++IFV E+ + +KL + SV + L+ + +
Sbjct: 450 KILIFVKSNES-SIRLSKLLQL----ICESRSQSSVLKNLQNL--------------AVS 490
Query: 477 VTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIP 536
+ + N+ K N IV A + +L+TTD+++RGI+ V+ YD P
Sbjct: 491 INSVNSNNSKAENKKIVANFSHHSESAGIT----ILITTDIMSRGIDINDITQVINYDPP 546
Query: 537 NTPVDLVHRVGRTGRMNQKGSVF 559
+ VHRVGRT R N+ GS +
Sbjct: 547 MSSQQYVHRVGRTARANELGSAY 569
>7296646 [A] KOG0331 ATP-dependent RNA helicase
Length = 577
Score = 109 bits (272), Expect = 1e-23
Identities = 94/386 (24%), Positives = 161/386 (41%), Gaps = 61/386 (15%)
Query: 192 AETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSKL 251
A+TGSGKT+ Y++P + ++ + D I +++L PT EL +Q+ Q ++
Sbjct: 183 AKTGSGKTLGYILPAIVHINNQQPLQRG-----DGPI--ALVLAPTRELAQQIQQVATEF 235
Query: 252 EPALGMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQVKFL 311
+ + G+ G + L+ +I++ TPG+++ + N L + +L
Sbjct: 236 GSSSYVRNTCVFGGAPKGGQMRDLQRGCEIVIATPGRLIDFLSAGSTN-----LKRCTYL 290
Query: 312 VMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFCSATIPKEFQKTITRLFPTVGVIASPNL 371
V+DEAD +LD + + ++ L SAT PKE ++ I +L
Sbjct: 291 VLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVKQLAEDFLGNYIQINIGSL 350
Query: 372 HKINHKNQIKLINADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIFVNEKENVPLV 431
+ N ++++ K K K L +Y + PG +++IFV K V +
Sbjct: 351 ELSANHNIRQVVDVCDEFSKEEKLKTLLSDIYDTSE---SPG---KIIIFVETKRRVDNL 404
Query: 432 ATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSN 491
+ +G A+ G+ S ER +
Sbjct: 405 -VRFIRSFGVRCGAIHGDKSQSER-----------------------------------D 428
Query: 492 IVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGR 551
V+ E F +LV TDV ARG++ G +YV+ +D P D +HR+GRTGR
Sbjct: 429 FVLRE-------FRSGKSNILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGR 481
Query: 552 MNQKGSVFIITGKRVKNWVKAIPSIV 577
N KG+ F K KA+ ++
Sbjct: 482 SNTKGTSFAFFTKNNAKQAKALVDVL 507
>SPBC17D1.06 [A] KOG0331 ATP-dependent RNA helicase
Length = 578
Score = 108 bits (269), Expect = 3e-23
Identities = 122/433 (28%), Positives = 182/433 (41%), Gaps = 86/433 (19%)
Query: 135 SSESLL---NKNLLDVKYNPKENNVQEFKKHLKPSPIQTTAIYQTSKTLMDPQLQVRLIA 191
SSE+LL + LDV +E K + +P+PIQ T L+ + V +
Sbjct: 159 SSENLLPILQFDELDVSAKLREG----LKNYKEPTPIQAA----TWPYLLAGRDVVGI-- 208
Query: 192 AETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSKL 251
AETGSGKT+A+ IP + YL +K++ R +++ PT EL Q Y+ ++ L
Sbjct: 209 AETGSGKTVAFGIPALQYLNGLS---------DNKSVPRVLVVSPTRELAIQTYENLNSL 259
Query: 252 EPALGMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQVKFL 311
+ G+ A K +++ TPG++L L N ++ SQV +L
Sbjct: 260 IQGTNLKAVVVYGGAPKSEQARAAKNA-SVIIGTPGRLLDLINDGSID-----CSQVGYL 313
Query: 312 VMDEADTLLDKSWVEDSYSTIKH-----MQNLNHVLFCSATIPKEFQKTITRLF--PTVG 364
V+DEAD +LD + +D + I H +F SAT P+ + P
Sbjct: 314 VLDEADRMLDTGFEQDIRNIISHTPDPTRNGSRQTVFFSATWPESVRALAATFLKDPVKI 373
Query: 365 VIASPNLHKINHKNQIKLINADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIFVNE 424
I S L + QI I D SK + L +L + G + +++IFV
Sbjct: 374 TIGSDELAASQNITQIVEILDD----PRSKERMLDNLL---RKHLSSGGKDDKILIFVLY 426
Query: 425 KENVPLVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVT 484
K+ V LA +Y +VV + G+ S RL+ + F KS K
Sbjct: 427 KKEAARVEGTLARKY--NVVGIHGDMSQGARLQALNDF----------KSGK-------- 466
Query: 485 MKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVH 544
VLV TDV ARG++ + V+ P T D VH
Sbjct: 467 ------------------------CPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVH 502
Query: 545 RVGRTGRMNQKGS 557
R+GRTGR N KG+
Sbjct: 503 RIGRTGRANTKGT 515
>At1g55150 [A] KOG0331 ATP-dependent RNA helicase
Length = 501
Score = 107 bits (268), Expect = 4e-23
Identities = 97/390 (24%), Positives = 167/390 (41%), Gaps = 69/390 (17%)
Query: 192 AETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSKL 251
AETGSGKT++YL+P + ++ M D IV ++L PT EL Q+ Q SK
Sbjct: 143 AETGSGKTLSYLLPAIVHVNAQPMLAHG-----DGPIV--LVLAPTRELAVQIQQEASKF 195
Query: 252 EPALGMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQVKFL 311
+ + T G V L+ ++I++ TPG+++ + + N L +V +L
Sbjct: 196 GSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMESNNTN-----LRRVTYL 250
Query: 312 VMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFCSATIPKEFQKTITRLF--PTVGVIASP 369
V+DEAD +LD + + H++ L+ SAT PKE ++ + P +I S
Sbjct: 251 VLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWSATWPKEVEQLSKKFLYNPYKVIIGSS 310
Query: 370 NLHKINHKNQIKLINADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIFVNEKENVP 429
+L QI + ++ Y L + D +D R+++F++ K+
Sbjct: 311 DLKANRAIRQIVDVISESQKYNK---------LVKLLEDIMD---GSRILVFLDTKKGCD 358
Query: 430 LVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPN 489
+ T+ G +++ G+ S ER
Sbjct: 359 QI-TRQLRMDGWPALSIHGDKSQAER---------------------------------- 383
Query: 490 SNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRT 549
+ V+ E F ++ TDV ARG++ + +YV+ YD P + D VHR+GRT
Sbjct: 384 -DWVLSE-------FRSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRT 435
Query: 550 GRMNQKGSVFIITGKRVKNWVKAIPSIVSK 579
GR KG+ + + K + +I+ +
Sbjct: 436 GRAGAKGTAYTFFTVANARFAKELTNILQE 465
>At5g63120 [A] KOG0331 ATP-dependent RNA helicase
Length = 564
Score = 107 bits (266), Expect = 7e-23
Identities = 99/371 (26%), Positives = 155/371 (41%), Gaps = 71/371 (19%)
Query: 192 AETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSKL 251
AETGSGKT+AYL+P + ++ D IV +IL PT EL Q+ + K
Sbjct: 182 AETGSGKTLAYLLPALVHVSAQPRLGQD-----DGPIV--LILAPTRELAVQIQEESRKF 234
Query: 252 EPALGMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQVKFL 311
G+ + G+ + L+ ++I++ TPG+++ + N L +V +L
Sbjct: 235 GLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLECQHTN-----LKRVTYL 289
Query: 312 VMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFCSATIPKEFQKTITRLF---PTVGVIAS 368
V+DEAD +LD + + ++ L SAT P+E + T+ R F P +I S
Sbjct: 290 VLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPREVE-TLARQFLRDPYKAIIGS 348
Query: 369 PNLHKINHKNQIKLINADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIFVNEKENV 428
+L NQ+ I P K ++ L + L +++IFV K
Sbjct: 349 TDLKANQSINQV--IEIVPTPEKYNRLLTLLKQLMD----------GSKILIFVETKRGC 396
Query: 429 PLVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIP 488
V T+ G +A+ G+ + ER ++V E
Sbjct: 397 DQV-TRQLRMDGWPALAIHGDKTQSER-------------------DRVLAE-------- 428
Query: 489 NSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGR 548
F ++ TDV ARG++ + + VV YD PNT D +HR+GR
Sbjct: 429 ---------------FKSGRSPIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGR 473
Query: 549 TGRMNQKGSVF 559
TGR KG F
Sbjct: 474 TGRAGAKGMAF 484
>At1g31970 [A] KOG0331 ATP-dependent RNA helicase
Length = 537
Score = 107 bits (266), Expect = 7e-23
Identities = 113/470 (24%), Positives = 197/470 (41%), Gaps = 85/470 (18%)
Query: 105 ERSKRLVSKINDFSQLKILPEVRDKLMEVISSES------LLNKNLLDVKY--------- 149
++ ++ K ++ ++ K +PE + + ++ ES + K + + KY
Sbjct: 62 KKKRKREEKESEKNKKKDVPEKKLEAEDLGEGESEQQKVVVTGKGVEEAKYAALKTFAES 121
Query: 150 NPKENNVQEFKKHLKPSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDY 209
N EN + K KPSPIQ+ T L+D + + + A+TGSGKT+A+ IP + +
Sbjct: 122 NLPENVLDCCKTFEKPSPIQS----HTWPFLLDGRDLIGI--AKTGSGKTLAFGIPAIMH 175
Query: 210 LKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYK 269
+ + +N K ++L PT EL Q+ + + G+ + GSS
Sbjct: 176 VLK---KNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKG 232
Query: 270 GFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSY 329
+ A++ +DI++ TPG++ L +++ LS V F+V+DEAD +LD + E
Sbjct: 233 PQISAIRSGVDIVIGTPGRLRDLIESNVLR-----LSDVSFVVLDEADRMLDMGFEEPVR 287
Query: 330 STIKHMQNLNHVLFCSATIPKEFQKTITRLF---PTVGVIASPNLHKINHKNQIKLINAD 386
+ + + ++ SAT P + K P +I S +L + QI + +
Sbjct: 288 FILSNTNKVRQMVMFSATWPLDVHKLAQEFMDPNPIKVIIGSVDLAANHDVMQIIEVLDE 347
Query: 387 MAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVAL 446
A + + L +L ++ + RV++F K + + Q G V++
Sbjct: 348 RA-----RDQRLIALLEKYHKSQ-----KNRVLVFALYKVEAERL-ERFLQQRGWKAVSI 396
Query: 447 TGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVE 506
GN + ER + F E
Sbjct: 397 HGNKAQSERTRSL------------------------------------------SLFKE 414
Query: 507 STLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKG 556
+ +LV TDV ARG++ V+ Y P T D VHR+GRTGR +KG
Sbjct: 415 GSCPLLVATDVAARGLDIPDVEVVINYTFPLTTEDYVHRIGRTGRAGKKG 464
>CE26887 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 730
Score = 106 bits (265), Expect = 9e-23
Identities = 98/415 (23%), Positives = 182/415 (43%), Gaps = 84/415 (20%)
Query: 162 HLKPSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRT-EMENPSW 220
+L+P+PIQ AI + Q + + AETGSGKT A+L+PL+ ++ +ME
Sbjct: 321 YLEPTPIQRQAIP------IGLQNRDVIGVAETGSGKTAAFLLPLLVWITSLPKMERQEH 374
Query: 221 ETLKDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRID 280
L AI I+ PT EL +Q+ + +K LG+ T G+S + L+ ++
Sbjct: 375 RDLGPYAI----IMAPTRELAQQIEEETNKFGKLLGIKTVSVIGGASREDQGMKLRMGVE 430
Query: 281 IMVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLN- 339
+++ TPG++L + + +L+Q ++++DEAD +LD + D +++M + N
Sbjct: 431 VVIATPGRLLDVLENRYL-----LLNQCTYVILDEADRMLDMGFEPDVQKVLEYMPDTNM 485
Query: 340 ----------HVLFCSATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQIKLINADMAP 389
L + +++++T+ +F A L + + + +++ A
Sbjct: 486 KKDTDEFDNEEALMKGFSTREKYRQTV--MFTATMSSAIERLAR-QYLRRPAVVHIGSA- 541
Query: 390 YKGSKTKALAQILYSINRDN--------IDPGFEKRVVIFVNEKENVPLVATKLANQYGH 441
G T+ + Q++Y + D ++ F+ ++IFVN+K+ +++ L + G
Sbjct: 542 --GKPTERVEQVVYMVPEDRKRKKLVEVLESQFQPPIIIFVNQKKGADMLSKGL-TKLGF 598
Query: 442 DVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDN 501
L G ++R +
Sbjct: 599 KPTVLHGGKGQDQREYAL------------------------------------------ 616
Query: 502 EAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKG 556
+A E T +LV TDV RGI+ + V+ YD+ + D HR+GRTGR + G
Sbjct: 617 QALKEGTSDILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTHRIGRTGRAGKHG 671
>CE24878 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 769
Score = 106 bits (265), Expect = 9e-23
Identities = 98/415 (23%), Positives = 182/415 (43%), Gaps = 84/415 (20%)
Query: 162 HLKPSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRT-EMENPSW 220
+L+P+PIQ AI + Q + + AETGSGKT A+L+PL+ ++ +ME
Sbjct: 321 YLEPTPIQRQAIP------IGLQNRDVIGVAETGSGKTAAFLLPLLVWITSLPKMERQEH 374
Query: 221 ETLKDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRID 280
L AI I+ PT EL +Q+ + +K LG+ T G+S + L+ ++
Sbjct: 375 RDLGPYAI----IMAPTRELAQQIEEETNKFGKLLGIKTVSVIGGASREDQGMKLRMGVE 430
Query: 281 IMVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLN- 339
+++ TPG++L + + +L+Q ++++DEAD +LD + D +++M + N
Sbjct: 431 VVIATPGRLLDVLENRYL-----LLNQCTYVILDEADRMLDMGFEPDVQKVLEYMPDTNM 485
Query: 340 ----------HVLFCSATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQIKLINADMAP 389
L + +++++T+ +F A L + + + +++ A
Sbjct: 486 KKDTDEFDNEEALMKGFSTREKYRQTV--MFTATMSSAIERLAR-QYLRRPAVVHIGSA- 541
Query: 390 YKGSKTKALAQILYSINRDN--------IDPGFEKRVVIFVNEKENVPLVATKLANQYGH 441
G T+ + Q++Y + D ++ F+ ++IFVN+K+ +++ L + G
Sbjct: 542 --GKPTERVEQVVYMVPEDRKRKKLVEVLESQFQPPIIIFVNQKKGADMLSKGL-TKLGF 598
Query: 442 DVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDN 501
L G ++R +
Sbjct: 599 KPTVLHGGKGQDQREYAL------------------------------------------ 616
Query: 502 EAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKG 556
+A E T +LV TDV RGI+ + V+ YD+ + D HR+GRTGR + G
Sbjct: 617 QALKEGTSDILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTHRIGRTGRAGKHG 671
>At3g58570 [A] KOG0335 ATP-dependent RNA helicase
Length = 646
Score = 106 bits (265), Expect = 9e-23
Identities = 102/403 (25%), Positives = 167/403 (41%), Gaps = 71/403 (17%)
Query: 161 KHLKPSPIQTTAI--YQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVD-YLKRTEMEN 217
K++KP+P+Q AI + LM A+TGSGKT A+ P++ +K +E
Sbjct: 165 KYVKPTPVQRNAIPILAAGRDLM--------ACAQTGSGKTAAFCFPIISGIMKDQHIER 216
Query: 218 PSWETLKDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKG 277
P ++IL PT EL Q++ K G+ G+ + L+
Sbjct: 217 PRGVR---GVYPLAVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQIRELER 273
Query: 278 RIDIMVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQ- 336
+DI+V TPG++ L V+ L V+FL +DEAD +LD + ++ M
Sbjct: 274 GVDILVATPGRLNDLLERGRVS-----LQMVRFLALDEADRMLDMGFEPQIRKIVQQMDM 328
Query: 337 ---NLNHVLFCSATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQIKLINADMAPYKGS 393
+ + SAT P+E Q+ + +A + ++ + + + +
Sbjct: 329 PPPGVRQTMLFSATFPREIQRLASDFLSNYIFLA---VGRVGSSTDLIVQRVEFV-HDSD 384
Query: 394 KTKALAQILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSVE 453
K L +L++ R+N + G + ++FV K+ G DS+E
Sbjct: 385 KRSHLMDLLHA-QRENGNQGKQALTLVFVETKK---------------------GADSLE 422
Query: 454 ERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLV 513
L I F TT ++ E V ++ +F +LV
Sbjct: 423 NWL-CINGF-----PATTIHGDRSQQEREVALR----------------SFKTGRTPILV 460
Query: 514 TTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKG 556
TDV ARG++ +VV +D+PN D VHR+GRTGR G
Sbjct: 461 ATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNSG 503
>At2g42520 [A] KOG0335 ATP-dependent RNA helicase
Length = 633
Score = 105 bits (262), Expect = 2e-22
Identities = 100/401 (24%), Positives = 168/401 (40%), Gaps = 67/401 (16%)
Query: 161 KHLKPSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVD-YLKRTEMENPS 219
K++KP+P+Q AI L++ + + A+TGSGKT A+ P++ +K ++ P
Sbjct: 178 KYVKPTPVQRHAI----PILLEGR--DLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPR 231
Query: 220 WETLKDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRI 279
++IL PT EL Q++ K G+ G+ + L+ +
Sbjct: 232 GSRT---VYPLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELERGV 288
Query: 280 DIMVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHM---- 335
DI+V TPG++ L + V+ + ++FL +DEAD +LD + ++ M
Sbjct: 289 DILVATPGRLNDLLERARVS-----MQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPP 343
Query: 336 QNLNHVLFCSATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQIKLINADMAPYKGSKT 395
+ + L SAT P+E Q+ +A + ++ + + + K
Sbjct: 344 RGVRQTLLFSATFPREIQRLAADFLANYIFLA---VGRVGSSTDLIVQRVEFV-LDSDKR 399
Query: 396 KALAQILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSVEER 455
L +L++ R+N G + ++FV K G DS+E
Sbjct: 400 SHLMDLLHA-QRENGIQGKQALTLVFVETKR---------------------GADSLENW 437
Query: 456 LEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTT 515
L I F T+ ++ E V +K AF +LV T
Sbjct: 438 L-CINGF-----PATSIHGDRTQQEREVALK----------------AFKSGRTPILVAT 475
Query: 516 DVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKG 556
DV ARG++ +VV +D+PN D VHR+GRTGR + G
Sbjct: 476 DVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSG 516
>7295314 [A] KOG0331 ATP-dependent RNA helicase
Length = 811
Score = 105 bits (261), Expect = 2e-22
Identities = 96/374 (25%), Positives = 167/374 (43%), Gaps = 71/374 (18%)
Query: 192 AETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSKL 251
A+TGSGKT+AY++P V ++ P E D I +++L PT EL +Q+ Q +
Sbjct: 194 AQTGSGKTLAYVLPAVVHINN----QPRLER-GDGPI--ALVLAPTRELAQQIQQVAIEF 246
Query: 252 EPALGMHTYKWDA---GSSYKGF-VEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQ 307
G +T+ + G + KG L+ ++I++ TPG++ I + R L +
Sbjct: 247 ----GSNTHVRNTCIFGGAPKGQQARDLERGVEIVIATPGRL-----IDFLERGTTSLKR 297
Query: 308 VKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFCSATIPKEFQKTITRLFPTVGVIA 367
+LV+DEAD +LD + ++ ++ VL SAT PKE ++ +
Sbjct: 298 CTYLVLDEADRMLDMGFEPQIRKIMQQIRPDRQVLMWSATWPKEVRQLAEEFLNNYIQVN 357
Query: 368 SPNLHKINHKNQIKLINADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIFVNEKEN 427
+L + N +++++ + K L ++L I+ +N E + +IFV K+
Sbjct: 358 IGSLSLSANHNILQIVD---VCDENEKLMKLIKLLTDISAEN-----ETKTIIFVETKKR 409
Query: 428 VPLVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKI 487
V + ++ Q G A+ G+ S +ER
Sbjct: 410 VDEITRNISRQ-GWRACAIHGDKSQQER-------------------------------- 436
Query: 488 PNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVG 547
+ V+ +F +LV TDV ARG++ ++V+ YD P+ D VHR+G
Sbjct: 437 ---DFVL-------SSFRNGRHSILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIG 486
Query: 548 RTGRMNQKGSVFII 561
RTGR N G+ + +
Sbjct: 487 RTGRSNNTGTAYTL 500
>7293060 [A] KOG0334 RNA helicase
Length = 1224
Score = 105 bits (261), Expect = 2e-22
Identities = 102/400 (25%), Positives = 178/400 (44%), Gaps = 77/400 (19%)
Query: 164 KPSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETL 223
KP+PIQ AI +M + + + A+TGSGKT+A+++P+ ++ ++ PS E
Sbjct: 532 KPTPIQCQAI----PAIMSGRDLIGI--AKTGSGKTLAFILPMFRHI----LDQPSMED- 580
Query: 224 KDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRIDIMV 283
D AI +II+ PT EL Q+ + + K +LG+ G+ + LK +I+V
Sbjct: 581 GDGAI--AIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKRGAEIIV 638
Query: 284 TTPGKILSLF--NISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHV 341
TPG+++ + N V L +V ++V+DEAD + D + I +++
Sbjct: 639 CTPGRMIDMLAANSGRVTN----LRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQT 694
Query: 342 LFCSATIPKEFQKTITRLF--PTVGVIASPNLHKINHKNQIKLINADMAPYKGSKTKALA 399
+ SAT P++ + R+ P ++ ++ + + ++N D +K + +
Sbjct: 695 VMFSATFPRQMEALARRILKKPIEVIVGGRSVVCKEVEQHVVILNDDAKFFKLLELLGIY 754
Query: 400 QILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSVEERLEKI 459
Q SI ++FV+++EN ++ L + + ++L G +R I
Sbjct: 755 QEAGSI-------------IVFVDKQENADILLRDLM-KASYPCMSLHGGIDQFDRDSTI 800
Query: 460 KPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLA 519
F KS KV ++L+ T V A
Sbjct: 801 IDF----------KSGKV--------------------------------RLLIATSVAA 818
Query: 520 RGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKGSVF 559
RG++ + VV YD+PN D VHR GRTGR +KGS +
Sbjct: 819 RGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAY 858
>Hs19743937 [A] KOG0338 ATP-dependent RNA helicase
Length = 796
Score = 104 bits (260), Expect = 3e-22
Identities = 97/397 (24%), Positives = 162/397 (40%), Gaps = 95/397 (23%)
Query: 192 AETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSKL 251
A TG+GKT A+ +P+++ L + P + R ++L+PT EL QV+ +L
Sbjct: 262 AATGTGKTAAFALPVLERLIYKPRQAP---------VTRVLVLVPTRELGIQVHSVTRQL 312
Query: 252 EPALGMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQVKFL 311
+ T G K AL+ DI++ TPG+++ + N P LS ++ L
Sbjct: 313 AQFCNITTCLAVGGLDVKSQEAALRAAPDILIATPGRLID----HLHNCPSFHLSSIEVL 368
Query: 312 VMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFCSATIPKEFQKTITRLFPTVGVIASPNL 371
++DEAD +LD+ + E I+ + + SAT+ E + +L
Sbjct: 369 ILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEVK----------------DL 412
Query: 372 HKINHKNQIKLI---NADMAPY------------KGSKTKALAQILYSINRDNIDPGFEK 416
++ KN +++ N D+AP+ +G + +A +L F
Sbjct: 413 ASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRT--------FTD 464
Query: 417 RVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEK 476
V++F K+ + L G V L GN S +RLE ++ F D
Sbjct: 465 HVMLFTQTKKQAHRMHI-LLGLMGLQVGELHGNLSQTQRLEALRRFKD------------ 511
Query: 477 VTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIP 536
+ +LV TDV ARG++ G + V+ + +P
Sbjct: 512 ------------------------------EQIDILVATDVAARGLDIEGVKTVINFTMP 541
Query: 537 NTPVDLVHRVGRTGRMNQKGSVFIITGKRVKNWVKAI 573
NT VHRVGRT R + G + G+ + +K I
Sbjct: 542 NTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEI 578
>7293941 [A] KOG0344 ATP-dependent RNA helicase
Length = 594
Score = 104 bits (259), Expect = 4e-22
Identities = 106/399 (26%), Positives = 172/399 (42%), Gaps = 83/399 (20%)
Query: 165 PSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETLK 224
P+PIQ A+ L+ Q + + A TGSGKT+A+L P+++ L+ +
Sbjct: 142 PTPIQMQAL----PVLL--QRRALMACAPTGSGKTLAFLTPIINGLRAHKTTG------- 188
Query: 225 DKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEA-LKGRIDIMV 283
+R+++L PT EL +Q+Y+ ++L G+ T+ S K A K R DI+V
Sbjct: 189 ----LRALVLAPTRELAQQIYRECAELTRETGLRTHFISKVSEAKQKHGAECKQRYDILV 244
Query: 284 TTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLD------KSWVEDSYSTIKHMQN 337
+TP ++ L P LS V++ V+DEAD L++ K ++D Y+ +
Sbjct: 245 STPNRVRFLL---QQEPPLLDLSHVEWFVLDEADRLMEEGQNNFKEQLDDIYAACSNPTK 301
Query: 338 LNHVLFCSATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQIKLINADMAPYKGSKTKA 397
V F SAT K R + I + Q +L+ + GS+
Sbjct: 302 C--VAFFSATYTVPVAKWALRHLKNLVRITIGVQNSATETVQQELL------FVGSEGGK 353
Query: 398 LAQILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSVEERLE 457
L I RD + G + V++FV KE + +L G +V + S +R
Sbjct: 354 LVAI-----RDLVRQGLQPPVLVFVQSKERAKQLFEELLYD-GINVDVIHAERSQHQR-- 405
Query: 458 KIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDV 517
+N V +AF E ++ VL+ T++
Sbjct: 406 ----------------------DNCV------------------KAFREGSIWVLICTEL 425
Query: 518 LARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKG 556
+ RGI+F+G V+ YD P T + +HR+GRTGR + G
Sbjct: 426 MGRGIDFKGVNLVINYDFPPTTISYIHRIGRTGRAGRPG 464
>7304081 [A] KOG0338 ATP-dependent RNA helicase
Length = 782
Score = 103 bits (258), Expect = 6e-22
Identities = 96/384 (25%), Positives = 157/384 (40%), Gaps = 68/384 (17%)
Query: 192 AETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSKL 251
A TG+GKT AY++P ++ L + L +KAI R ++L+PT EL QVYQ +L
Sbjct: 201 AATGTGKTAAYMLPTLERLL--------YRPLNNKAITRVLVLVPTRELGAQVYQVTKQL 252
Query: 252 EPALGMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQVKFL 311
+ G K L+ DI++ TPG+++ + N P L ++ L
Sbjct: 253 CQFTTIDVGLAIGGLDVKAQEAVLRQNPDIVIATPGRLID----HIKNTPSFTLDSIEVL 308
Query: 312 VMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFCSATIPKEFQK-TITRLFPTVGVIASPN 370
++DEAD +LD+ + E I + SAT+ ++ + L + V + N
Sbjct: 309 ILDEADRMLDEYFAEQMKEIINSCCKTRQTMLFSATMSEQVKDLAAVSLDKPIKVFVNNN 368
Query: 371 LH-KINHKNQIKLINADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIFVNEKENVP 429
N + + I D +G + LA ++ F ++FV K+
Sbjct: 369 QQVAFNLRQEFIRIREDK---EGDREPILASLICRT--------FHDHCMVFVQTKKQAH 417
Query: 430 LVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPN 489
+ L G L GN + ++RLE +K F
Sbjct: 418 RLHI-LLGLLGVRAGELHGNLTQQQRLESLKKFK-------------------------- 450
Query: 490 SNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRT 549
E + VL+ TDV ARG++ G + V+ + +P T +HRVGRT
Sbjct: 451 ----------------EEQIDVLIATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRT 494
Query: 550 GRMNQKGSVFIITGKRVKNWVKAI 573
R + G + G++ + VK I
Sbjct: 495 ARAGRAGISVSLAGEKERKIVKDI 518
>CE23832 [A] KOG0341 DEAD-box protein abstrakt
Length = 630
Score = 102 bits (254), Expect = 2e-21
Identities = 94/380 (24%), Positives = 165/380 (42%), Gaps = 71/380 (18%)
Query: 192 AETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSKL 251
A TGSGKTM +++PLV + EM+ P + + I++P+ EL Q++ + ++
Sbjct: 234 ASTGSGKTMTFVLPLVMFCLEQEMKLPFMRSEGPFGL----IIVPSRELARQIFDLIIEM 289
Query: 252 EPALGMHTY-KWDAGSSYKGF-----VEALKGRIDIMVTTPGKILSLFNISMVNRPDRIL 305
ALG + AG G + ++ I I+V TPG++ + ++N L
Sbjct: 290 FDALGKAGLPEMRAGLCIGGVPIGEQAKDVRDGIHIVVATPGRLSDMLTKKIIN-----L 344
Query: 306 SQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFCSATIPKEFQKTITRLFPTVGV 365
++LV+DEAD +LD + ++ S + L SAT+P++ Q F
Sbjct: 345 EVCRYLVLDEADRMLDMGFEDEIKSIFYFFKAQRQTLLFSATMPRKIQ------FFAKSA 398
Query: 366 IASPNLHKINHKNQIKLINADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIFVNEK 425
+ P + + L + S+ K L ++L + + + +V+IF +K
Sbjct: 399 LVKPIVVNVGRAGAASLNVLQELEFVRSENK-LVRVLECLQKTS------PKVLIFAEKK 451
Query: 426 ENVPLVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTM 485
+V + L + G +V ++ G +R I+ F RK+EK
Sbjct: 452 VDVDNIYEYLLVK-GVEVASIHGGKDQSDRHAGIEAF---------RKNEK--------- 492
Query: 486 KIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHR 545
VLV TDV ++G++F+G +V+ +D+P + VHR
Sbjct: 493 ------------------------DVLVATDVASKGLDFQGIEHVINFDMPEDIENYVHR 528
Query: 546 VGRTGRMNQKGSVFIITGKR 565
+GRTGR +KG K+
Sbjct: 529 IGRTGRSGRKGLATTFINKK 548
>CE28031 [A] KOG0334 RNA helicase
Length = 747
Score = 101 bits (252), Expect = 3e-21
Identities = 107/413 (25%), Positives = 171/413 (40%), Gaps = 74/413 (17%)
Query: 150 NPKENNVQEFKKHLKPSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDY 209
N K NV + ++ KP+ IQ AI ++M + + + A+TGSGKT+A+L+P+ +
Sbjct: 312 NLKMMNVLKKFEYSKPTSIQAQAI----PSIMSGRDVIGI--AKTGSGKTLAFLLPMFRH 365
Query: 210 LKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYK 269
+ ++ P E D I ++IL PT EL Q Y+ +K LG+ G
Sbjct: 366 I----LDQPELEE-GDGPI--AVILAPTRELAMQTYKEANKFAKPLGLKVACTYGGVGIS 418
Query: 270 GFVEALKGRIDIMVTTPGKILSLF--NISMVNRPDRILSQVKFLVMDEADTLLDKSWVED 327
+ LK +I+V TPG+++ + N V L +V +LV+DEAD + DK +
Sbjct: 419 EQIADLKRGAEIVVCTPGRMIDVLAANSGKVTN----LRRVTYLVLDEADRMFDKGFEPQ 474
Query: 328 SYSTIKHMQNLNHVLFCSATIPKEFQKTITR-LFPTVGVIASPNLHKINHKNQIKLINAD 386
+ +++ + SAT P+ + + L V ++ + Q +I A+
Sbjct: 475 IMKVVNNIRPDKQTVLFSATFPRHMEALARKVLDKPVEILVGGKSVVCSDITQNAVICAE 534
Query: 387 MAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVAL 446
K K L + Y E ++FV+++E + +L + V L
Sbjct: 535 --HQKFLKLLELLGMYYE----------EGSSIVFVDKQEKADDIVDQLMRTGYNSVAPL 582
Query: 447 TGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVE 506
G +R I F
Sbjct: 583 HGGIDQHDRDSSIADFK------------------------------------------T 600
Query: 507 STLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKGSVF 559
+KVLV T V ARG++ + VV YD PN D VHRVGRTGR +KG +
Sbjct: 601 GVIKVLVATSVAARGLDVKNLILVVNYDCPNHYEDYVHRVGRTGRAGRKGYAY 653
>CE27427 [A] KOG0334 RNA helicase
Length = 970
Score = 101 bits (252), Expect = 3e-21
Identities = 107/413 (25%), Positives = 171/413 (40%), Gaps = 74/413 (17%)
Query: 150 NPKENNVQEFKKHLKPSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDY 209
N K NV + ++ KP+ IQ AI ++M + + + A+TGSGKT+A+L+P+ +
Sbjct: 312 NLKMMNVLKKFEYSKPTSIQAQAI----PSIMSGRDVIGI--AKTGSGKTLAFLLPMFRH 365
Query: 210 LKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYK 269
+ ++ P E D I ++IL PT EL Q Y+ +K LG+ G
Sbjct: 366 I----LDQPELEE-GDGPI--AVILAPTRELAMQTYKEANKFAKPLGLKVACTYGGVGIS 418
Query: 270 GFVEALKGRIDIMVTTPGKILSLF--NISMVNRPDRILSQVKFLVMDEADTLLDKSWVED 327
+ LK +I+V TPG+++ + N V L +V +LV+DEAD + DK +
Sbjct: 419 EQIADLKRGAEIVVCTPGRMIDVLAANSGKVTN----LRRVTYLVLDEADRMFDKGFEPQ 474
Query: 328 SYSTIKHMQNLNHVLFCSATIPKEFQKTITR-LFPTVGVIASPNLHKINHKNQIKLINAD 386
+ +++ + SAT P+ + + L V ++ + Q +I A+
Sbjct: 475 IMKVVNNIRPDKQTVLFSATFPRHMEALARKVLDKPVEILVGGKSVVCSDITQNAVICAE 534
Query: 387 MAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVAL 446
K K L + Y E ++FV+++E + +L + V L
Sbjct: 535 --HQKFLKLLELLGMYYE----------EGSSIVFVDKQEKADDIVDQLMRTGYNSVAPL 582
Query: 447 TGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVE 506
G +R I F
Sbjct: 583 HGGIDQHDRDSSIADFK------------------------------------------T 600
Query: 507 STLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKGSVF 559
+KVLV T V ARG++ + VV YD PN D VHRVGRTGR +KG +
Sbjct: 601 GVIKVLVATSVAARGLDVKNLILVVNYDCPNHYEDYVHRVGRTGRAGRKGYAY 653
>At2g40700 [A] KOG0348 ATP-dependent RNA helicase
Length = 609
Score = 101 bits (252), Expect = 3e-21
Identities = 108/410 (26%), Positives = 181/410 (43%), Gaps = 67/410 (16%)
Query: 189 LIAAETGSGKTMAYLIPLVDYLK-RTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQT 247
L+ A TG+GKT+AYL PL+ +L+ + + S T +++++PT EL QVY+T
Sbjct: 71 LVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTF-------ALVIVPTRELCLQVYET 123
Query: 248 VSKLEPALGMHTYKWDA-----GSSYKGFVEA-LKGRIDIMVTTPGKILSLFNISMVNRP 301
+ KL +H + W G K +A L+ I I++ TPG++L + N
Sbjct: 124 LEKL-----LHRFHWIVPGYVMGGEKKAKEKARLRKGISILIATPGRLLD----HLKNTA 174
Query: 302 DRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHM-QNLNHVLFCSATIPKEFQKTITRLF 360
+ +++++ DEAD++L+ + ++ IK + N +PK QK L
Sbjct: 175 SFVHKNLRWVIFDEADSILELGYGKEIEQIIKLLGSGQNEQGEEDDIVPKGIQKQNLLLS 234
Query: 361 PTVGVIASPNLHKINHKNQIKLINADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVI 420
T+ K+N ++ L + M +K L Q L SI + +VI
Sbjct: 235 ATLN-------DKVNDLAKLSLDDPVMIGLDNTK---LQQNL-SIESPAAPDSDAEDMVI 283
Query: 421 FVNEKENVPL-----VATKLANQY-----GHDVVAL--------------------TGND 450
VN+ N PL + ++L +Y G +VAL + D
Sbjct: 284 HVNKSAN-PLSEDYGIPSQLVQRYLRVPCGARLVALLSVLKNLFEREASQKVVVFFSTRD 342
Query: 451 SVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLK 510
+V+ + F PP T + K T ++ + ++ E+ F
Sbjct: 343 AVDFHYSLLSEFQWPPNSETEEEGTKELFLKCKTFRL-HGSMEQEDRRSAFGTFKTEKQA 401
Query: 511 VLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKGSVFI 560
VL++TDV ARG++F R ++ YD P + VHRVGRT R+ +KG +
Sbjct: 402 VLLSTDVAARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARIGEKGEALL 451
>CE18785 [A] KOG0331 ATP-dependent RNA helicase
Length = 561
Score = 101 bits (251), Expect = 4e-21
Identities = 89/369 (24%), Positives = 158/369 (42%), Gaps = 65/369 (17%)
Query: 192 AETGSGKTMAYLIP-LVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSK 250
A+TGSGKT+A+++P LV K+ + + ++LLPT EL +QV +
Sbjct: 173 AKTGSGKTLAFMLPALVHITKQAHRQRGEGPAV--------LVLLPTRELAQQVQEVSID 224
Query: 251 LEPALGMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQVKF 310
+LG+ G+S L+ +DI+V TPG++L + N + + +
Sbjct: 225 FCHSLGLKMTCLFGGASKGPQARDLERGVDIVVATPGRLLDFLDNGTTN-----MKKCSY 279
Query: 311 LVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFCSATIPKEFQKTITRLFPTVGVIASPN 370
LV+DEAD +LD + I ++ L SAT PKE + + + +
Sbjct: 280 LVLDEADRMLDMGFEPQIKKIIGQIRPDRQTLMFSATWPKEVRALASDFQKDAAFLNVGS 339
Query: 371 LHKINHKNQIKLINADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIFVNEKENVPL 430
L + N +++ D+ + K + + + +N+ E + +IFV K
Sbjct: 340 LELAANHNITQVV--DILEEHAKQAKLMELLNHIMNQK------ECKTIIFVETKRKADE 391
Query: 431 VATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNS 490
+ T+ + G + + G+ + ER
Sbjct: 392 L-TRAMRRDGWPTLCIHGDKNQGER----------------------------------- 415
Query: 491 NIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTG 550
+ V++E F +++ TDV ARG++ ++V+ YD PN D VHR+GRTG
Sbjct: 416 DWVLQE-------FKAGKTPIMLATDVAARGLDVDDIKFVINYDYPNNSEDYVHRIGRTG 468
Query: 551 RMNQKGSVF 559
R ++KG+ +
Sbjct: 469 RSDKKGTAY 477
>YNL112w [A] KOG0331 ATP-dependent RNA helicase
Length = 546
Score = 100 bits (249), Expect = 6e-21
Identities = 95/368 (25%), Positives = 153/368 (40%), Gaps = 67/368 (18%)
Query: 192 AETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSKL 251
A TGSGKT++Y +P + ++ + P D IV ++L PT EL Q+ SK
Sbjct: 157 AATGSGKTLSYCLPGIVHINAQPLLAPG-----DGPIV--LVLAPTRELAVQIQTECSKF 209
Query: 252 EPALGMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQVKFL 311
+ + G + L +I++ TPG+++ + I N L +V +L
Sbjct: 210 GHSSRIRNTCVYGGVPKSQQIRDLSRGSEIVIATPGRLIDMLEIGKTN-----LKRVTYL 264
Query: 312 VMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFCSATIPKEFQKTITRLF--PTVGVIASP 369
V+DEAD +LD + + ++ L SAT PKE ++ P + S
Sbjct: 265 VLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLAADYLNDPIQVQVGSL 324
Query: 370 NLHKINHKNQIKLINADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIFVNEKENVP 429
L ++ QI + +D K L + L + ++DN E + +IF + K
Sbjct: 325 ELSASHNITQIVEVVSDF-----EKRDRLNKYLETASQDN-----EYKTLIFASTKRMCD 374
Query: 430 LVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPN 489
+ TK + G +A+ G+ ER
Sbjct: 375 DI-TKYLREDGWPALAIHGDKDQRER---------------------------------- 399
Query: 490 SNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRT 549
+ V++E F ++V TDV ARGI+ +G YV+ YD+P D VHR+GRT
Sbjct: 400 -DWVLQE-------FRNGRSPIMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRT 451
Query: 550 GRMNQKGS 557
GR G+
Sbjct: 452 GRAGATGT 459
>SPBP8B7.16c [A] KOG0331 ATP-dependent RNA helicase
Length = 550
Score = 100 bits (249), Expect = 6e-21
Identities = 99/391 (25%), Positives = 163/391 (41%), Gaps = 73/391 (18%)
Query: 194 TGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSKLEP 253
TGSGKT++Y +P + ++ + +P D IV ++L PT EL Q+ Q +K
Sbjct: 168 TGSGKTLSYCLPAIVHINAQPLLSPG-----DGPIV--LVLAPTRELAVQIQQECTKFGK 220
Query: 254 ALGMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQVKFLVM 313
+ + G + L ++I + TPG++L + + + N L +V +LV+
Sbjct: 221 SSRIRNTCVYGGVPRGPQIRDLIRGVEICIATPGRLLDMLDSNKTN-----LRRVTYLVL 275
Query: 314 DEADTLLDKSWVEDSYSTIKHMQNLNHVLFCSATIPKEFQKTI-----TRLFPTVGVIAS 368
DEAD +LD + + ++ + SAT PKE Q+ + TVG +
Sbjct: 276 DEADRMLDMGFEPQIRKIVDQIRPDRQTVMFSATWPKEVQRLARDYLNDYIQVTVGSLDL 335
Query: 369 PNLHKINHKNQIKLINADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIFVNEKENV 428
H I ++ D A + K + ++L +RDN +V+IF K V
Sbjct: 336 AASHNIKQIVEV----VDNADKRARLGKDIEEVLK--DRDN-------KVLIFTGTK-RV 381
Query: 429 PLVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIP 488
T+ Q G +A+ G+ + +ER + F T K P
Sbjct: 382 ADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFR--------------------TGKSP 421
Query: 489 NSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGR 548
++V TDV +RGI+ +G +V YD P D VHR+GR
Sbjct: 422 ----------------------IMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGR 459
Query: 549 TGRMNQKGSVFIITGKRVKNWVKAIPSIVSK 579
TGR KG+ + + + SI+S+
Sbjct: 460 TGRAGAKGTAYTYFTSDNAKQARELVSILSE 490
>SPBC21H7.04 [A] KOG0348 ATP-dependent RNA helicase
Length = 709
Score = 100 bits (249), Expect = 6e-21
Identities = 103/437 (23%), Positives = 191/437 (43%), Gaps = 49/437 (11%)
Query: 165 PSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETLK 224
P+ IQ+ + L++ + I A+TGSGKT+AYL+P+V L R +N T
Sbjct: 162 PTAIQSCCL----PALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLP-KNLHTRT-- 214
Query: 225 DKAIVRSIILLPTHELVEQVYQTVSKLEPALGMH---TYKWDAGSSYKGFVEALKGRIDI 281
+ + ++I+ PT EL +Q+Y +KL H + G K ++ ++I
Sbjct: 215 --SGIYAVIMAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVNI 272
Query: 282 MVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHV 341
++ TPG++ + N +SQV+++V+DE D L+D + E + ++++ + +
Sbjct: 273 LIGTPGRLAD----HLENTEALDVSQVRWVVLDEGDRLMDMGFEETLTKILSYLESQSSI 328
Query: 342 LFCSATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQIKLINADMAPYKGSKTKALAQI 401
+ +IP + +T L L K+ + L ++ + ++A Q+
Sbjct: 329 IKKDLSIPS---RKVTMLCSATMKDTVKRLSDSALKDALYLKSSIVEETNDGYSQAPEQL 385
Query: 402 LYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLAN--QYGHDVVALTGNDSVEERLEKI 459
L +R V+ + V LVA ++ Y ++ L+ +DSV+ E
Sbjct: 386 L-------------QRYVVVPPKLRLVSLVALLRSHVRSYKKIIIFLSCSDSVDFHFEAF 432
Query: 460 KPFMDPPKKMTTRK----SEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLK----- 510
+ ++ + K SE N ++I + V ++ STL
Sbjct: 433 RCAINADEMEEAVKEKPDSEGDIISNAPALRIDGKSNVYRLHGSLSQQIRTSTLNLFSSS 492
Query: 511 ------VLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKGSVFIITGK 564
+L+ TDV ARG++ VV YD P + D +HR+GRT R G+ +
Sbjct: 493 EDSGSHILLCTDVAARGLDLPNVDLVVQYDAPFSTDDYLHRIGRTARAGHNGAAIMFLLP 552
Query: 565 RVKNWVKAIPSIVSKNV 581
+ ++ + S VS N+
Sbjct: 553 KESEYINLLKSSVSANI 569
>CE01341 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 402
Score = 100 bits (249), Expect = 6e-21
Identities = 101/422 (23%), Positives = 176/422 (40%), Gaps = 85/422 (20%)
Query: 164 KPSPIQTTAIYQ--TSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRTEMENPSWE 221
KPS IQ AI T K + + A++G+GKT + + + L+R + E+P
Sbjct: 51 KPSAIQKRAIVPCTTGKDV--------IAQAQSGTGKTATFSVSI---LQRIDHEDPH-- 97
Query: 222 TLKDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRIDI 281
V+++++ PT EL +Q+ + +S L L ++ G+S + L+ I +
Sbjct: 98 -------VQALVMAPTRELAQQIQKVMSALGEYLNVNILPCIGGTSVRDDQRKLEAGIHV 150
Query: 282 MVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHV 341
+V TPG++ M+NR S++K V+DEAD +L + + + Y + M V
Sbjct: 151 VVGTPGRVGD-----MINRNALDTSRIKMFVLDEADEMLSRGFKDQIYEVFRSMPQDVQV 205
Query: 342 LFCSATIPKEFQKTITRLFPT-VGVIASPNLHKINHKNQIKLINADMAPYKGSKTKALAQ 400
+ SAT+P E R + ++ + + Q IN + K L
Sbjct: 206 VLLSATMPSEVLDVTNRFMRNPIRILVKKDELTLEGIRQF-YINVQKDEW---KFDCLCD 261
Query: 401 ILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLA-NQYGHDVVALTGNDSVEERLEKI 459
+ +N + VIF N + V + K+ NQ+ V L G+
Sbjct: 262 LYNVVN--------VTQAVIFCNTRRKVDTLTEKMTENQF--TVSCLHGD---------- 301
Query: 460 KPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLA 519
MD ++ T + F + +VL+TTD+LA
Sbjct: 302 ---MDQAERDTIMRE-----------------------------FRSGSSRVLITTDILA 329
Query: 520 RGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKGSVFIITGKRVKNWVKAIPSIVSK 579
RGI+ + V+ YD+P+ + +HR+GR+GR +KG + +K I S +
Sbjct: 330 RGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTENDARQLKEIESYYTT 389
Query: 580 NV 581
+
Sbjct: 390 QI 391
>Hs5453840_1 [A] KOG0331 ATP-dependent RNA helicase
Length = 469
Score = 100 bits (248), Expect = 8e-21
Identities = 91/368 (24%), Positives = 152/368 (40%), Gaps = 63/368 (17%)
Query: 192 AETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSKL 251
A+TGSGKT+AYL+P + ++ P E D I ++L PT EL +QV Q
Sbjct: 136 AQTGSGKTLAYLLPAIVHINH----QPYLER-GDGPIC--LVLAPTRELAQQVQQVADDY 188
Query: 252 EPALGMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQVKFL 311
+ + G+ + L+ ++I + TPG+++ N L + +L
Sbjct: 189 GKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTN-----LRRCTYL 243
Query: 312 VMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFCSATIPKEFQKTITRLFPTVGVIASPNL 371
V+DEAD +LD + + ++ L SAT PKE ++ I NL
Sbjct: 244 VLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNL 303
Query: 372 HKINHKNQIKLINADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIFVNEKENVPLV 431
+ N +++++ M K K L Q++ I + E + +IFV K +
Sbjct: 304 ELSANHNILQIVDVCMESEKDHK---LIQLMEEIMAEK-----ENKTIIFVETKRRCDDL 355
Query: 432 ATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSN 491
T+ + G + + G+ S ER +
Sbjct: 356 -TRRMRRDGWPAMCIHGDKSQPER-----------------------------------D 379
Query: 492 IVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGR 551
V+ E F +L+ TDV +RG++ ++V+ YD PN+ D VHR+GRT R
Sbjct: 380 WVLNE-------FRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTAR 432
Query: 552 MNQKGSVF 559
KG+ +
Sbjct: 433 STNKGTAY 440
>YLL008w [A] KOG0338 ATP-dependent RNA helicase
Length = 752
Score = 99.8 bits (247), Expect = 1e-20
Identities = 107/427 (25%), Positives = 190/427 (44%), Gaps = 74/427 (17%)
Query: 162 HLKPSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRTEMENPSWE 221
++KPSPIQ+ I L+ + + A TGSGKT A++IP+++ L + P+
Sbjct: 251 YVKPSPIQSATI---PIALLGKDI---IAGAVTGSGKTAAFMIPIIERL----LYKPA-- 298
Query: 222 TLKDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGS-SYKGFVEALKGRID 280
A R I+LLPT EL QV ++ + T+ G + + + LK R D
Sbjct: 299 ---KIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRPD 355
Query: 281 IMVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNH 340
I++ TPG+ + + N + V+ LVMDEAD +L++ + ++ + + +
Sbjct: 356 IVIATPGRFID----HIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQ 411
Query: 341 VLFCSATIPKEFQKTIT-RLFPTVGVIASPNLHKINHKNQIKLINADMAPYKGSKTKALA 399
L SAT+ + + ++ L V ++ P K KL + K K
Sbjct: 412 NLLFSATMNSKIKSLVSLSLKKPVRIMIDP-----PKKAATKLTQEFVRIRKRDHLK--P 464
Query: 400 QILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSVEERLEKI 459
+L+++ R +DP +KR+V+FV KE + + G V L G+ + E+RL+ +
Sbjct: 465 ALLFNLIR-KLDPTGQKRIVVFVARKETAHRLRI-IMGLLGMSVGELHGSLTQEQRLDSV 522
Query: 460 KPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLA 519
F + +++P VL+ TD+ +
Sbjct: 523 NKFKN--------------------LEVP----------------------VLICTDLAS 540
Query: 520 RGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKGS--VFIITGKRVKNWVKAIPSIV 577
RG++ V+ YD+P + +HRVGRT R ++G F+ + ++ V+A V
Sbjct: 541 RGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRSIVRAAIKSV 600
Query: 578 SKNVSIS 584
+N S++
Sbjct: 601 EENKSLT 607
>At2g33730 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 733
Score = 99.8 bits (247), Expect = 1e-20
Identities = 100/401 (24%), Positives = 161/401 (39%), Gaps = 69/401 (17%)
Query: 164 KPSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETL 223
KPSPIQ AI + Q + + AETGSGKT A+++P++ Y+ R + ET
Sbjct: 335 KPSPIQMAAIP------LGLQQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETE 388
Query: 224 KDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRIDIMV 283
A+V + PT EL +Q+ + K LG G S + + +I++
Sbjct: 389 GPYAVV----MAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQGLKITQGCEIVI 444
Query: 284 TTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLF 343
TPG++ I + R +L+Q ++V+DEAD ++D + + M + N L
Sbjct: 445 ATPGRL-----IDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPSSN--LK 497
Query: 344 CSATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQIKLINADMAPYKGSKTKALAQILY 403
+ +K I R P + ++ K + + G T ++Q +
Sbjct: 498 PENEEEELDEKKIYRTTYMFSATMPPGVERLARKYLRNPVVVTIGT-AGKTTDLISQHVI 556
Query: 404 SINRDN--------IDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSVEER 455
+ +D EK ++FVN K+N +A L ++ G+ V L G S E+R
Sbjct: 557 MMKESEKFFRLQKLLDELGEKTAIVFVNTKKNCDSIAKNL-DKAGYRVTTLHGGKSQEQR 615
Query: 456 LEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTT 515
+ E F VLV T
Sbjct: 616 EISL------------------------------------------EGFRAKRYNVLVAT 633
Query: 516 DVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKG 556
DV+ RGI+ +V+ YD+P HR+GRTGR + G
Sbjct: 634 DVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAGKSG 674
>SPCC285.03 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 604
Score = 99.4 bits (246), Expect = 1e-20
Identities = 94/394 (23%), Positives = 172/394 (42%), Gaps = 63/394 (15%)
Query: 190 IAAETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVS 249
++A TGSGKT++Y+IP+V L + +R ++++PT EL QV +T
Sbjct: 178 VSAATGSGKTLSYVIPIVQCLSHRTVPR-----------LRCVVIVPTRELTVQVAKTFE 226
Query: 250 KLEPALGMHTYKWDAGSSYKGFVEALKG-----RIDIMVTTPGKILSLFNISMVNRPDRI 304
G+ W S + L G RID++V+TPG+++ + N
Sbjct: 227 YYMSGAGLQVCAWTGQKSLRHETYQLNGDENECRIDVLVSTPGRLVD----HIRNDESFS 282
Query: 305 LSQVKFLVMDEADTLLDKS---WVEDSYSTIKH---MQNLNHVLFCSATIPKEFQKTITR 358
L ++++V+DEAD LLD+S WV+ I H +QN +++L I F I
Sbjct: 283 LQHLRYMVIDEADRLLDQSFQDWVDTVMMEISHPKCLQNKSNILDLDQNISPTFLPDIDT 342
Query: 359 LF------PTVGVIASPNLH---------KINHKNQIKLINADMAPYKGSKTKALAQILY 403
L P ++ S L K+++ + + N DM G + + A +
Sbjct: 343 LLPYRLPSPLQKLVFSATLTRDPSKIASLKLHNPRLVLVQNKDMEVDDGGEIEDDAIVF- 401
Query: 404 SINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYG-HDVVALTGNDSVEERLEKIKPF 462
++ P ++ V +EK P++ L + +++ ++ RL ++
Sbjct: 402 -----SVPPTLQEYHVSVSSEK---PILLYHLIHSKNLTNILCFVKSNEAAARLHRLLEL 453
Query: 463 MDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGI 522
+ + + + + S++ +E + F L +LV +D++ARGI
Sbjct: 454 IHE------------SLNQSFSCGLFTSSLSRDERKKIISRFATGDLNLLVCSDLMARGI 501
Query: 523 NFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKG 556
+ + V+ YD P + VHR+GRT R ++G
Sbjct: 502 DVANTQNVINYDPPLSVRSYVHRIGRTARAGREG 535
>7299061 [A] KOG0335 ATP-dependent RNA helicase
Length = 798
Score = 99.4 bits (246), Expect = 1e-20
Identities = 104/418 (24%), Positives = 171/418 (40%), Gaps = 83/418 (19%)
Query: 154 NNVQEFKKHLKPSPIQTTAI--YQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLK 211
NNV ++ KP+P+Q AI + LM A+TGSGKT A+L+P+++ +
Sbjct: 308 NNVA-LARYDKPTPVQKHAIPIIINGRDLM--------ACAQTGSGKTAAFLVPILNQMY 358
Query: 212 RTEMENPSWET---LKDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSY 268
P T + K ++L PT EL Q+++ K M G++
Sbjct: 359 ELGHVPPPQSTRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNT 418
Query: 269 KGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDS 328
+ L ++V TPG++ M+ R L ++FLV+DEAD +LD + E
Sbjct: 419 SEQMRELDRGCHLIVATPGRL-----EDMITRGKVGLENIRFLVLDEADRMLDMGF-EPQ 472
Query: 329 YSTIKHMQNL-----NHVLFCSATIPKEFQKTIT-----RLFPTVGVIASPNLHKINHKN 378
I N+ L SAT PK+ Q+ + +F VG + S + +
Sbjct: 473 IRRIVEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSEN------ 526
Query: 379 QIKLINADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQ 438
+ + Y+ K L +L SI RD + + +IFV K+ + + Q
Sbjct: 527 ---ITQTILWVYEPDKRSYLLDLLSSI-RDGPEYTKDSLTLIFVETKKGADSL-EEFLYQ 581
Query: 439 YGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIP 498
H V ++ G+ + +ER E ++
Sbjct: 582 CNHPVTSIHGDRTQKEREEALR-------------------------------------- 603
Query: 499 EDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKG 556
F +LV T V ARG++ ++V+ +D+P+ + VHR+GRTGRM G
Sbjct: 604 ----CFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLG 657
>At4g09730 [A] KOG0331 ATP-dependent RNA helicase
Length = 496
Score = 99.0 bits (245), Expect = 2e-20
Identities = 101/380 (26%), Positives = 162/380 (42%), Gaps = 82/380 (21%)
Query: 189 LIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDK-AIVRSIILLPTHELVEQVYQT 247
++ + TGSGKT+AYL+P+V L E+ + K K R+++L PT EL EQV
Sbjct: 153 VLGSHTGSGKTLAYLLPIVQVLSELMREDEANLGKKTKPRRPRTVVLCPTRELSEQV--C 210
Query: 248 VSKLEPALGMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQ 307
+ + + GS + ++L ID++V TPG+IL + + +
Sbjct: 211 LHQDYHHARFRSILVSGGSRIRPQEDSLNNAIDMVVGTPGRIL-----QHIEEGNMVYGD 265
Query: 308 VKFLVMDEADTLLDKSWVEDSYSTI----KHMQNLNHVLFCSATIPKEFQKTITRLFPTV 363
+ +LV+DEADT+ D+ + + + +H++ +N ++ A QK + F +
Sbjct: 266 IAYLVLDEADTMFDRGFGPEIRKFLAPLNQHIKVVNEIVSFQAV-----QKLVDEEFQGI 320
Query: 364 GVIASPNLHKINHKNQIKLINA--DMAPYKG--SKTKALAQILYSINRDNIDPGFEK--R 417
+ + LHK K+ NA D G K +AL Q+L +P K +
Sbjct: 321 EHLRTSTLHK-------KIANARHDFIKLSGGEDKLEALLQVL--------EPSLAKGSK 365
Query: 418 VVIFVNEKENVPLVATKLA-NQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEK 476
V++F N + V L+ NQ V G E+R+E +K F D
Sbjct: 366 VMVFCNTLNSSRAVDHYLSENQI--STVNYHGEVPAEQRVENLKKFKDE----------- 412
Query: 477 VTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIP 536
E LV TD+ ARG++ +VV++D P
Sbjct: 413 -----------------------------EGDCPTLVCTDLAARGLDL-DVDHVVMFDFP 442
Query: 537 NTPVDLVHRVGRTGRMNQKG 556
+D +HR GRT RM KG
Sbjct: 443 KNSIDYLHRTGRTARMGAKG 462
>SPAC22F3.08c [A] KOG0344 ATP-dependent RNA helicase
Length = 481
Score = 98.6 bits (244), Expect = 2e-20
Identities = 108/410 (26%), Positives = 166/410 (40%), Gaps = 98/410 (23%)
Query: 189 LIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTV 248
L A TGSGKT+AYL P+ L++ ++ P R+II+ PT EL EQ+Y+
Sbjct: 87 LACAPTGSGKTIAYLFPI---LQKLQLHVPGG--------YRAIIVAPTRELCEQIYRQA 135
Query: 249 SKLEPALGMHTYKWD-AGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQ 307
KL + + + + L+ + D+ + TP +++ + +
Sbjct: 136 EKLSFGTSLKIIELSKSNEKIQEKAPKLREKYDMCIGTPMRLVQAIQTGL------SFEK 189
Query: 308 VKFLVMDEADTLLDKSWVE--DSYSTIKHMQNLNHVLFCSATIP---KEFQKTITRLFPT 362
V+F VMDEAD L + ++E D + N+ LF SATIP +E K +T
Sbjct: 190 VEFFVMDEADRLFEPGFIEQTDHILSACTSSNICKSLF-SATIPSRVEELAKVVT--VDP 246
Query: 363 VGVIASPNLHKINHKNQIKLINADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIFV 422
+ +I + +Q L + GS T + + I+ + P RVVIFV
Sbjct: 247 IRIIVGLKDAATDSIDQRLL-------FVGSDTSKIVILRQMISNGELKP----RVVIFV 295
Query: 423 NEKENVPLVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENT 482
+ E + T+L H V + G +R E + F RK E
Sbjct: 296 QDIERAKALYTELLFDEIH-VGVIHGELPQAKREEALAKF---------RKGE------- 338
Query: 483 VTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDL 542
+ VL+ TD+LARGI+F G + V+ +D P +
Sbjct: 339 --------------------------IWVLIATDLLARGIDFHGVKMVINFDFPQSVHSY 372
Query: 543 VHRVGRTGRMNQKG------------------SVFIITGKRVKNWVKAIP 574
+HR+GRTGR G V +G V NWV A+P
Sbjct: 373 IHRIGRTGRAGNTGQAVTFFTKEDGEYIKLIAGVMRSSGCEVPNWVMALP 422
>At3g06480 [A] KOG0331 ATP-dependent RNA helicase
Length = 1088
Score = 98.6 bits (244), Expect = 2e-20
Identities = 124/533 (23%), Positives = 206/533 (38%), Gaps = 77/533 (14%)
Query: 30 SGSSIKSNLRSKPRADTRWNTKAKPPVKNRKSNGKGXXXXXXXXXXXAKPSXXXXXXXXX 89
S ++ ++NL+S+P D+ N + + PV+ + +
Sbjct: 322 SNNTYENNLQSRPGNDSYVNMRMEVPVRGAQPLHPAAMPKDIRISGGPPTNADPAMGQTG 381
Query: 90 YGEYGKLSEGDP-KILERSKRLVSKINDFSQLKILPEVRDKLMEVISSESLLNKNLLDVK 148
+G YG P K L R + S D L + R + + E++ +
Sbjct: 382 HGTYGHAGPAFPNKSLVRPHFVTSP--DVPHLSPVEIYRKQHEVTTTGENIPAPYITFES 439
Query: 149 YNPKENNVQEFKKHLKPSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVD 208
++E PSP A QT + + V + A+TGSGKT+ YLIP
Sbjct: 440 SGLPPEILRELLSAGFPSPTPIQA--QTWPIALQSRDIVAI--AKTGSGKTLGYLIPAFI 495
Query: 209 YLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSY 268
L+ ++ + T+ +IL PT EL Q+ + + + G+
Sbjct: 496 LLRHCRNDSRNGPTV--------LILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPK 547
Query: 269 KGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDS 328
++ L+ DI+V TPG++ + + M++ QV LV+DEAD +LD +
Sbjct: 548 GPQLKELERGADIVVATPGRLNDILEMKMID-----FQQVSLLVLDEADRMLDMGFEPQI 602
Query: 329 YSTIKHMQNLNHVLFCSATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQIKLIN--AD 386
+ + L +AT PKE +K + L N+ +++ K I +
Sbjct: 603 RKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNP---VQVNIGRVDELAANKAITQYVE 659
Query: 387 MAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVAL 446
+ P + K + L QIL S R + +V+IF + K +A + +G V +
Sbjct: 660 VVP-QMEKERRLEQILRSQERGS-------KVIIFCSTKRLCDHLARSVGRHFG--AVVI 709
Query: 447 TGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVE 506
G+ + ER + F +S K
Sbjct: 710 HGDKTQGERDWVLNQF----------RSGKSC---------------------------- 731
Query: 507 STLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKGSVF 559
VL+ TDV ARG++ + R V+ YD P D VHR+GRTGR G F
Sbjct: 732 ----VLIATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAF 780
>SPCC63.11 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 662
Score = 97.8 bits (242), Expect = 4e-20
Identities = 98/393 (24%), Positives = 155/393 (38%), Gaps = 85/393 (21%)
Query: 192 AETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSKL 251
AETGSGKT A++IPL+ + + S L A+V L PT EL +Q+ +K
Sbjct: 293 AETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVV----LAPTRELAQQIQVEGNKF 348
Query: 252 EPALGMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQVKFL 311
LG G +++ + I+V TPG++L + +LSQ ++
Sbjct: 349 AEPLGFRCVSVVGGHAFEEQSFQMSQGAHIVVATPGRLLDCLERRLF-----VLSQCTYV 403
Query: 312 VMDEADTLLDKSWVEDSYSTIKHMQNLN-------------------HVLFCSATIPKEF 352
VMDEAD +LD + +D + + + N + SAT+P
Sbjct: 404 VMDEADRMLDMGFEDDVNKILSSLPSSNASEKDGSILATANSSSSRRQTIMFSATLPPRV 463
Query: 353 QKTITR--LFPTVGVIASPNLHKINHKNQIKLINADMAPYKGSKTKALAQILYSINRDNI 410
+ P + I + + ++++I+ D K + + +IL S NR
Sbjct: 464 ANLAKSYLIEPVMLTIGNIGQAVDRVEQRVEMISDD-----SKKWRRVEEILES-NR--- 514
Query: 411 DPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMT 470
F ++IFVN K N+ +A +L N G V L G+ S E+R I
Sbjct: 515 ---FSPPIIIFVNLKRNIEAIAKQL-NAIGWHAVTLHGSKSQEQRERAI----------- 559
Query: 471 TRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYV 530
E T +LV TD+ RGI+ V
Sbjct: 560 -------------------------------EQLRNKTADILVATDIAGRGIDIPNVSLV 588
Query: 531 VLYDIPNTPVDLVHRVGRTGRMNQKGSVFIITG 563
+ Y++ + D HR+GRTGR + G+ G
Sbjct: 589 LNYNMAKSIEDYTHRIGRTGRAGKSGTAITFLG 621
>Hs4759278 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 820
Score = 97.1 bits (240), Expect = 7e-20
Identities = 107/427 (25%), Positives = 172/427 (40%), Gaps = 111/427 (25%)
Query: 164 KPSPIQTTAIYQTSKTLMDPQLQVRLI--AAETGSGKTMAYLIPLVDYLKRTEMENPSWE 221
+P+PIQ AI LQ R I AETGSGKT A+LIPL+ ++ + E
Sbjct: 413 EPTPIQRQAI--------PIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEE 464
Query: 222 TLKDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRIDI 281
+ + +IIL PT EL +Q+ + K LG+ T G S + L+ +I
Sbjct: 465 SDQGPY---AIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEI 521
Query: 282 MVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNH- 340
++ TPG+++ + + +LS+ ++V+DEAD ++D + D ++HM N
Sbjct: 522 VIATPGRLIDVLENRYL-----VLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQK 576
Query: 341 --------------------------VLFCSATIPKEFQKTITRLFPTVGVIASPNLHKI 374
V+F +AT+P ++ V+ + K
Sbjct: 577 PDTDEAEDPEKMLANFESGKHKYRQTVMF-TATMPPAVERLARSYLRRPAVVYIGSAGKP 635
Query: 375 NHKNQIKLINADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIFVNEKENVPLVATK 434
+ + + K+ + K K L IL + GF+ ++IFVN+K+ ++A
Sbjct: 636 HERVEQKVFLMS----ESEKRKKLLAIL--------EQGFDPPIIIFVNQKKGCDVLAKS 683
Query: 435 LANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVI 494
L + G++ L G E+R
Sbjct: 684 L-EKMGYNACTLHGGKGQEQR--------------------------------------- 703
Query: 495 EEIPEDNEAFVESTLK-----VLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRT 549
F S LK +LV TDV RGI+ + VV YD+ D +HR+GRT
Sbjct: 704 --------EFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRT 755
Query: 550 GRMNQKG 556
GR + G
Sbjct: 756 GRAGKSG 762
>Hs17474597 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 820
Score = 97.1 bits (240), Expect = 7e-20
Identities = 107/427 (25%), Positives = 172/427 (40%), Gaps = 111/427 (25%)
Query: 164 KPSPIQTTAIYQTSKTLMDPQLQVRLI--AAETGSGKTMAYLIPLVDYLKRTEMENPSWE 221
+P+PIQ AI LQ R I AETGSGKT A+LIPL+ ++ + E
Sbjct: 413 EPTPIQRQAI--------PIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEE 464
Query: 222 TLKDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRIDI 281
+ + +IIL PT EL +Q+ + K LG+ T G S + L+ +I
Sbjct: 465 SDQGPY---AIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEI 521
Query: 282 MVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNH- 340
++ TPG+++ + + +LS+ ++V+DEAD ++D + D ++HM N
Sbjct: 522 VIATPGRLIDVLENRYL-----VLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQK 576
Query: 341 --------------------------VLFCSATIPKEFQKTITRLFPTVGVIASPNLHKI 374
V+F +AT+P ++ V+ + K
Sbjct: 577 PDTDEAEDPEKMLANFESGKHKYRQTVMF-TATMPPAVERLARSYLRRPAVVYIGSAGKP 635
Query: 375 NHKNQIKLINADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIFVNEKENVPLVATK 434
+ + + K+ + K K L IL + GF+ ++IFVN+K+ ++A
Sbjct: 636 HERVEQKVFLMS----ESEKRKKLLAIL--------EQGFDPPIIIFVNQKKGCDVLAKS 683
Query: 435 LANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVI 494
L + G++ L G E+R
Sbjct: 684 L-EKMGYNACTLHGGKGQEQR--------------------------------------- 703
Query: 495 EEIPEDNEAFVESTLK-----VLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRT 549
F S LK +LV TDV RGI+ + VV YD+ D +HR+GRT
Sbjct: 704 --------EFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRT 755
Query: 550 GRMNQKG 556
GR + G
Sbjct: 756 GRAGKSG 762
>ECU09g1640 [A] KOG0326 ATP-dependent RNA helicase
Length = 489
Score = 97.1 bits (240), Expect = 7e-20
Identities = 100/420 (23%), Positives = 168/420 (39%), Gaps = 83/420 (19%)
Query: 165 PSPIQTTAIYQT--SKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRTEMENPSWET 222
PSP+Q +I K L L+ ++ G+GKT +Y++P+++ + +E+
Sbjct: 131 PSPVQVASIPHVLGGKNL--------LVRSKNGTGKTASYIVPMLNMINSSELS------ 176
Query: 223 LKDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRIDIM 282
++ IIL+P EL Q+ + V ++ G+ + G+S + + + + +M
Sbjct: 177 ------IQGIILVPIRELALQISRNVKRMSEGTGVISAPVVGGTSMQDDIIRVSNGVHVM 230
Query: 283 VTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVL 342
V TPG+I + +V + LS+ LV DEAD LLD ++ E + + +L
Sbjct: 231 VGTPGRI-----VDLVEKRVGTLSKRVILVFDEADKLLDVTFGETVTKLLDLLPREKQML 285
Query: 343 FCSATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQIKLINADMAPYKGSKTKALAQIL 402
SAT P I R I NL K +K + P K L +L
Sbjct: 286 LYSATFPYFVTGFIRRYMKNPLCI---NLMKELAPVGVKQFYTYVKP--SEKLLCLKSLL 340
Query: 403 YSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSVEERLEKIKPF 462
++ + + VIF N + V L+A K+
Sbjct: 341 LRLSIN--------QCVIFCNSIKTVELLAMKITE------------------------- 367
Query: 463 MDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGI 522
M P K M + NIV F++ K+LV TD++ RG+
Sbjct: 368 MGLPSYFIHSK-----------MAQEDRNIVFHN-------FLKGKCKILVATDLITRGV 409
Query: 523 NFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKGSVFIITGKRVKNWVKAIPSIVSKNVS 582
+ YV+ +DI +P +HR+GR GR G + K + I + + K +S
Sbjct: 410 DAPNTNYVINFDISKSPESYLHRIGRAGRFGAPGVAISLVTTEEKEMLMDIEAKLGKEIS 469
>7298459 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 802
Score = 97.1 bits (240), Expect = 7e-20
Identities = 103/415 (24%), Positives = 174/415 (41%), Gaps = 88/415 (21%)
Query: 164 KPSPIQTTAIYQTSKTLMDPQLQVRLI--AAETGSGKTMAYLIPLVDYLKRTEMENPSWE 221
+P+PIQ AI LQ R I AETGSGKT+A+LIPL+ +++ P E
Sbjct: 416 EPTPIQRQAI--------PIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQSL----PKIE 463
Query: 222 TLKD-KAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRID 280
L+D +II+ PT EL +Q+ + +K LG+ T G S + L+ +
Sbjct: 464 RLEDVDQGPYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQGFRLRLGCE 523
Query: 281 IMVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLN- 339
I++ TPG++ I ++ +L+Q ++V+DEAD ++D + D +++M N
Sbjct: 524 IVIATPGRL-----IDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNL 578
Query: 340 ----------HVLFCSATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQIKLINADMAP 389
L + K++++T+ +F A L + + + +
Sbjct: 579 KPDTEEAEDETKLMENFYTKKKYRQTV--MFTATMPPAVERLARTYLRRPATVYIGSV-- 634
Query: 390 YKGSKTKALAQILYSINRDN--------IDPGFEKRVVIFVNEKENVPLVATKLANQYGH 441
G T+ QI+Y + ++ + + V+IFVN+K+ ++A L + G+
Sbjct: 635 --GKPTERTEQIVYMMGENDKRKKLMEILSRKIDPPVIIFVNQKKGADVLAKGL-EKLGY 691
Query: 442 DVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDN 501
+ L G E+R +
Sbjct: 692 NSCTLHGGKGQEQREYAL------------------------------------------ 709
Query: 502 EAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKG 556
A +LV TDV RGI+ + V+ YD+ T D HR+GRTGR + G
Sbjct: 710 AALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTGRAGKTG 764
>Hs11321632 [A] KOG0339 ATP-dependent RNA helicase
Length = 709
Score = 96.7 bits (239), Expect = 9e-20
Identities = 95/385 (24%), Positives = 161/385 (41%), Gaps = 79/385 (20%)
Query: 192 AETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSKL 251
A+TGSGKT A++ P++ ++ + P D I ++I+ PT EL +Q++ +
Sbjct: 178 AKTGSGKTAAFIWPMLIHIMDQKELEPG-----DGPI--AVIVCPTRELCQQIHAECKRF 230
Query: 252 EPALGMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQVKFL 311
A + + G S +AL+ +I+V TPG++ I V + L +V +L
Sbjct: 231 GKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRL-----IDHVKKKATNLQRVSYL 285
Query: 312 VMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFCSATIPKEFQKTITRLFPTVGVIASPNL 371
V DEAD + D + S H++ L SAT K+ +K ++ P
Sbjct: 286 VFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLAR------DILIDP-- 337
Query: 372 HKINHKNQIKLINADMAPYKGSKTKALAQILYS-------INRDNIDPGFEKRVVIFVNE 424
I+++ D+ T+ + +IL+S + R ++ V++FV +
Sbjct: 338 --------IRVVQGDIGEANEDVTQ-IVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTK 388
Query: 425 KENVPLVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVT 484
K N +A L Q GH++ L G+ ER
Sbjct: 389 KANAEELANNL-KQEGHNLGLLHGDMDQSER----------------------------- 418
Query: 485 MKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVH 544
N VI + F + + VLV TDV ARG++ + V+ YD+ H
Sbjct: 419 ------NKVISD-------FKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTH 465
Query: 545 RVGRTGRMNQKGSVFIITGKRVKNW 569
R+GRTGR +KG + + + N+
Sbjct: 466 RIGRTGRAGEKGVAYTLLTPKDSNF 490
>At1g20920 [A] KOG0334 RNA helicase
Length = 1166
Score = 96.7 bits (239), Expect = 9e-20
Identities = 95/393 (24%), Positives = 170/393 (43%), Gaps = 69/393 (17%)
Query: 164 KPSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETL 223
KP PIQT A+ +M + + + A+TGSGKT+ +++P++ ++K + P E
Sbjct: 551 KPMPIQTQAL----PIIMSGRDCIGV--AKTGSGKTLGFVLPMLRHIK----DQPPVEA- 599
Query: 224 KDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRIDIMV 283
D I +++ PT ELV+Q++ + K LG+ GS + LK +I+V
Sbjct: 600 GDGPI--GLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTEIVV 657
Query: 284 TTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLF 343
TPG+++ + S + L +V FLVMDEAD + D + I++++ +
Sbjct: 658 CTPGRMIDILCTSSGKITN--LRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPERQTVL 715
Query: 344 CSATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQIKLINADMAPYKGSKTKALAQILY 403
SAT P++ + T+ R V + +K+ +L+ ++ P + + L ++L
Sbjct: 716 FSATFPRQVE-TLARKVLNKPVEIQVGGRSVVNKDITQLV--EVRP-ESDRFLRLLELLG 771
Query: 404 SINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSVEERLEKIKPFM 463
+ + ++++FV +E + + + ++L G +R I F
Sbjct: 772 EWSE-------KGKILVFVQSQEKCDALYRDMIKS-SYPCLSLHGGKDQTDRESTISDFK 823
Query: 464 DPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGIN 523
+ +L+ T V ARG++
Sbjct: 824 N------------------------------------------DVCNLLIATSVAARGLD 841
Query: 524 FRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKG 556
+ VV +D PN D VHRVGRTGR +KG
Sbjct: 842 VKELELVVNFDAPNHYEDYVHRVGRTGRAGRKG 874
>YDR243c [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 588
Score = 96.3 bits (238), Expect = 1e-19
Identities = 112/507 (22%), Positives = 211/507 (41%), Gaps = 112/507 (22%)
Query: 95 KLSEGDPKILERSKRLVSK-------INDFSQLKILPEVRDKLMEVISSESLLNKNLLDV 147
+++E D +IL+ +V+K + ++ +L I+P RD L +I
Sbjct: 145 EMNERDWRILKEDYAIVTKGGTVENPLRNWEELNIIP--RDLLRVII------------- 189
Query: 148 KYNPKENNVQEFKKHLKPSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLV 207
QE + P+PIQ I Q + L A TGSGKT+A++IP++
Sbjct: 190 ---------QELR-FPSPTPIQRITIPNVCNM---KQYRDFLGVASTGSGKTLAFVIPIL 236
Query: 208 DYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSKL------EPALGMHTYK 261
+ R+ PS + + +++IL PT ELV+Q+ + K+ E
Sbjct: 237 IKMSRSPPRPPSLKIIDGP---KALILAPTRELVQQIQKETQKVTKIWSKESNYDCKVIS 293
Query: 262 WDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLD 321
G S + +L DI+V TPG+++ ++ ++ QV+ LV+DEAD ++D
Sbjct: 294 IVGGHSLEEISFSLSEGCDILVATPGRLIDSLENHLL-----VMKQVETLVLDEADKMID 348
Query: 322 KSWVEDSYSTIKHMQNLNHVLFCSATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQIK 381
+ ED + I ++N + + ++ + P + IA+ + K
Sbjct: 349 LGF-EDQVTNILTKVDIN----ADSAVNRQTLMFTATMTPVIEKIAAGYMQ--------K 395
Query: 382 LINADMAPYKGSKTKALAQILYSINRDN-------IDPGFEKRVVIFVNEKENVPLVATK 434
+ A + GS+ + Y+ N ++ I ++ ++IF+N K+ +A K
Sbjct: 396 PVYATIGVETGSEPLIQQVVEYADNDEDKFKKLKPIVAKYDPPIIIFINYKQTADWLAEK 455
Query: 435 LANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVI 494
+ V L G+ S E+R ++ F ++ KV
Sbjct: 456 FQKETNMKVTILHGSKSQEQREHSLQLF----------RTNKV----------------- 488
Query: 495 EEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQ 554
++++ T+V ARG++ VV + I D +HR+GRTGR
Sbjct: 489 ---------------QIMIATNVAARGLDIPNVSLVVNFQISKKMDDYIHRIGRTGRAAN 533
Query: 555 KG-SVFIITGKRVKNWVKAIPSIVSKN 580
+G +V ++ ++ ++ + V K+
Sbjct: 534 EGTAVSFVSAAEDESLIRELYKYVRKH 560
>SPAC31A2.07c [A] KOG0337 ATP-dependent RNA helicase
Length = 848
Score = 96.3 bits (238), Expect = 1e-19
Identities = 116/430 (26%), Positives = 180/430 (40%), Gaps = 55/430 (12%)
Query: 141 NKNLLDVKYNPKENNVQE-----------FKKHLK-PSPIQTTAIYQTSKTLMDPQLQVR 188
N+ K N K +N Q FKK K P+PIQ +T L++ + V
Sbjct: 56 NRRTKGKKGNGKASNFQSMGLNQTLLRAIFKKGFKAPTPIQR----KTIPLLLEGRDVVG 111
Query: 189 LIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTV 248
+ A TGSGKT A++IP++++LK T + + R++IL P EL Q + V
Sbjct: 112 M--ARTGSGKTAAFVIPMIEHLKSTLANSNT----------RALILSPNRELALQTVKVV 159
Query: 249 SKLEPALGMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQV 308
+ + G S + L G+ DI+V TPG+ L L + M LS +
Sbjct: 160 KDFSKGTDLRSVAIVGGVSLEEQFSLLSGKPDIVVATPGRFLHL-KVEMKLE----LSSI 214
Query: 309 KFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFCSATIPKEFQKTITRLFPTVGVIAS 368
+++V DEAD L + + + + L SAT+P+ F G +
Sbjct: 215 EYVVFDEADRLFEMGFAAQLTEILHALPTSRQTLLFSATLPRTLVD-----FAKAG-LQD 268
Query: 369 PNLHKINHKNQIK--LINADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIFVNEKE 426
P L +++ ++++ L +A + + AL IL I + + R + VN +
Sbjct: 269 PVLVRLDVESKVSADLQSAFFSVKTAEREAALLCILQDIIKLPLKDNVRPREIGNVNNPK 328
Query: 427 NVPLVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMK 486
K A + +AL G++S + P K SE + K
Sbjct: 329 K-----RKRALE-----LALKGSESGSPDSTLV---FVPTKHHVEYVSELLVQAGYSVSK 375
Query: 487 IPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRV 546
I S + E N + T +LV TDV +RGI+ V+ YD P P VHRV
Sbjct: 376 IYGSLDQEARLNEINNFRLGKT-NLLVVTDVASRGIDIPLLANVINYDFPPQPKVFVHRV 434
Query: 547 GRTGRMNQKG 556
GRT R + G
Sbjct: 435 GRTARAGRTG 444
>7298204 [A] KOG0335 ATP-dependent RNA helicase
Length = 661
Score = 96.3 bits (238), Expect = 1e-19
Identities = 97/401 (24%), Positives = 171/401 (42%), Gaps = 90/401 (22%)
Query: 165 PSPIQTTAI--YQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRTEMENPSWET 222
P+PIQ +I + + LM A+TGSGKT A+L+P++ L +E+P
Sbjct: 268 PTPIQKCSIPVISSGRDLM--------ACAQTGSGKTAAFLLPILSKL----LEDPHELE 315
Query: 223 LKDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRIDIM 282
L +V I+ PT EL Q++ K + G+S++ E + ++
Sbjct: 316 LGRPQVV---IVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVV 372
Query: 283 VTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKH--MQNLNH 340
+ TPG++L + + + D +F+V+DEAD +LD + ED + H M+ +
Sbjct: 373 IATPGRLLDFVDRTFITFED-----TRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQ 427
Query: 341 VLFCSATIPKEFQKTI-----TRLFPTVGVIASPNLHKINHKNQIKLINADMAPYKGSKT 395
L SAT P+E Q+ +F +G++ + K I +N K +K
Sbjct: 428 TLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGA---CSDVKQTIYEVN------KYAKR 478
Query: 396 KALAQILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSVEER 455
L +IL S D ++FV K +A+ L+ + ++ G+ +R
Sbjct: 479 SKLIEIL-SEQADG--------TIVFVETKRGADFLASFLSEK-EFPTTSIHGDRLQSQR 528
Query: 456 LEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTT 515
+ ++ F + ++KVL+ T
Sbjct: 529 EQALRDFKN------------------------------------------GSMKVLIAT 546
Query: 516 DVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKG 556
V +RG++ + ++V+ YD+P+ D VHR+GRTGR+ G
Sbjct: 547 SVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNG 587
>Hs15316941 [A] KOG0344 ATP-dependent RNA helicase
Length = 491
Score = 95.9 bits (237), Expect = 2e-19
Identities = 103/422 (24%), Positives = 186/422 (43%), Gaps = 83/422 (19%)
Query: 165 PSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETLK 224
P+PIQ AI L +L L +A TGSGKT+A+ IP++ LK+ +
Sbjct: 80 PTPIQMQAI---PVMLHGREL---LASAPTGSGKTLAFSIPILMQLKQPANKG------- 126
Query: 225 DKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYK-WDAGSSYKGFVEALKGRIDIMV 283
R++I+ PT EL Q+++ + K+ G + A + K F + DI+V
Sbjct: 127 ----FRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILV 182
Query: 284 TTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLD--KSWVEDSYSTI---KHMQNL 338
TTP +++ L + P L+ V++LV+DE+D L + K+ D ++I +
Sbjct: 183 TTPNRLIYLLK---QDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKV 239
Query: 339 NHVLFCSATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQ-IKLINADMAPYKGSKTKA 397
+F SAT + ++ V ++ I +N ++ + ++ + GS+T
Sbjct: 240 RRAMF-SATFAYDVEQWCKLNLDNVISVS------IGARNSAVETVEQELL-FVGSETGK 291
Query: 398 LAQILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSVEERLE 457
L + R+ + GF V++FV E + +L + G +V + + ++R
Sbjct: 292 LLAM-----RELVKKGFNPPVLVFVQSIERAKELFHELIYE-GINVDVIHAERTQQQR-- 343
Query: 458 KIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDV 517
+NTV +F + VL+ T +
Sbjct: 344 ----------------------DNTV------------------HSFRAGKIWVLICTAL 363
Query: 518 LARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKGSVFIITGKRVKNWVKAIPSIV 577
LARGI+F+G V+ YD P + V+ +HR+GRTGR KG + K ++++ +++
Sbjct: 364 LARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFFTEDDKPLLRSVANVI 423
Query: 578 SK 579
+
Sbjct: 424 QQ 425
>At4g15850 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 474
Score = 95.9 bits (237), Expect = 2e-19
Identities = 104/425 (24%), Positives = 179/425 (41%), Gaps = 68/425 (16%)
Query: 190 IAAETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVS 249
+ + TGSGKT++Y +P+V L + +R++++LPT +L QV
Sbjct: 29 VNSPTGSGKTLSYALPIVQLLASRPVR-----------CLRALVVLPTRDLALQVKDVFD 77
Query: 250 KLEPALGM-------------------HTYKWDAGSSY--KGFVEALKGRIDIMVTTPGK 288
+ PA+G+ T K DAG Y + L+ +DI+V TPG+
Sbjct: 78 AIAPAVGLSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPDDLSQNLESAVDILVATPGR 137
Query: 289 ILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFCSAT- 347
++ N N L +++LV+DE D LL +++ + ++ Q + LF S T
Sbjct: 138 LMDHIN----NTKGFTLEHLRYLVVDETDRLLREAYQSWLPTVLQLTQTSDDSLFPSFTP 193
Query: 348 -IPKEF--QKTITRLFPTVGVIASPNLHKINHKNQIKLINADMAPYKGSKTKAL-----A 399
+P F +T+ R G P + +K++ + SK L
Sbjct: 194 FVPSAFGSLQTVRRQSVERGFKGKP------YPRLVKMVLSATLTQDPSKLIQLDLHHPL 247
Query: 400 QILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSVEERLEKI 459
+ +R + E +I + V LVA L + G + T + RL K+
Sbjct: 248 FMTTGGSRYRLPEKLECLRLICETGMKPVYLVAL-LKSWEGEKCIIFTSSVETTRRLCKL 306
Query: 460 KPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLA 519
F PK S + N ++ +E+ +AF + ++VLV +D L
Sbjct: 307 LNFFGDPKIKAKEYSGGL-----------NQSLRSKEL----KAFRKGDIQVLVASDALT 351
Query: 520 RGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKGSVF-IITGKRVKNWVKAIPSIVS 578
RG++ +G V+ YD+P +HR GRT R Q G F +++ V+ + K + + S
Sbjct: 352 RGMDVKGVTNVINYDMPPFAKTFIHRAGRTARAGQAGRCFTLLSNHEVRRFSKLLEKVGS 411
Query: 579 KNVSI 583
+ I
Sbjct: 412 DSCPI 416
>7290853 [A] KOG0331 ATP-dependent RNA helicase
Length = 945
Score = 95.5 bits (236), Expect = 2e-19
Identities = 93/374 (24%), Positives = 164/374 (42%), Gaps = 68/374 (18%)
Query: 192 AETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSKL 251
A+TGSGKT+AY++P + ++ ++ + + +++L PT EL +Q+ V
Sbjct: 281 AQTGSGKTLAYMLPAIVHIGNQP------PIIRGEGPI-ALVLAPTRELAQQIQSVVRDY 333
Query: 252 ----EPALGMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQ 307
+P + HT + GSS L +++++ TPG+++ N L +
Sbjct: 334 GHLCKPEI-RHTCIF-GGSSKVPQARDLDRGVEVIIATPGRLIDFLENRNTN-----LQR 386
Query: 308 VKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFCSATIPKEFQKTI-TRLFPTVGV- 365
+LV+DEAD +LD + I+ ++ V+ SAT PKE Q L + +
Sbjct: 387 CTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVVMWSATWPKEVQALAGDFLNDYIQIN 446
Query: 366 IASPNLHKINHKNQIKLINADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIFVNEK 425
I S NL ++ QI I ++ K + L +L I+ ++++FV K
Sbjct: 447 IGSMNLSANHNIRQIVEICTEI-----EKPQRLVCLLNEISPIKNSGNNGNKIIVFVETK 501
Query: 426 ENVPLVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTM 485
V + ++ G++ ++ G+ + ER +K F +
Sbjct: 502 IKVEDI-LQIIRAEGYNATSIHGDKTQNERDSVLKDFRN--------------------- 539
Query: 486 KIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHR 545
SNI L+ TDV +RG++ +YV+ YD PN+ + VHR
Sbjct: 540 --GKSNI-------------------LIATDVASRGLDVEDLQYVINYDYPNSSENYVHR 578
Query: 546 VGRTGRMNQKGSVF 559
+GRTGR Q G+ +
Sbjct: 579 IGRTGRCQQLGTAY 592
>Hs9507237 [A] KOG0335 ATP-dependent RNA helicase
Length = 724
Score = 95.1 bits (235), Expect = 3e-19
Identities = 89/378 (23%), Positives = 152/378 (39%), Gaps = 78/378 (20%)
Query: 189 LIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTV 248
+ A+TGSGKT A+L+P++ ++ + ++ L++ II+ PT ELV Q+Y
Sbjct: 329 MACAQTGSGKTAAFLLPILAHMMHDGITASRFKELQEP---ECIIVAPTRELVNQIYLEA 385
Query: 249 SKLEPALGMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQV 308
K + G+ + + +I+ TPG+++ + + L Q+
Sbjct: 386 RKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIG-----LKQI 440
Query: 309 KFLVMDEADTLLDKSWVEDSYSTIK----HMQNLNHVLFCSATIPKEFQKTITR------ 358
K+LV+DEAD +LD + + I + L SAT P+E Q+
Sbjct: 441 KYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNY 500
Query: 359 LFPTVGVIASPNLHKINHKNQIKLINADMAPYKGSKTKALAQILYSINRDNIDPGFEKRV 418
LF VG + Q+ + SK + L +IL +I ++R
Sbjct: 501 LFVAVGQVGGACRDVQQTVLQVG---------QFSKREKLVEILRNIG--------DERT 543
Query: 419 VIFVNEKENVPLVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVT 478
++FV K+ +AT L + ++ T E+ E+ + D
Sbjct: 544 MVFVETKKKADFIATFLC----QEKISTTSIHGDREQREREQALGD-------------- 585
Query: 479 TENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNT 538
F VLV T V ARG++ ++V+ +D+P+T
Sbjct: 586 -------------------------FRFGKCPVLVATSVAARGLDIENVQHVINFDLPST 620
Query: 539 PVDLVHRVGRTGRMNQKG 556
+ VHR+GRTGR G
Sbjct: 621 IDEYVHRIGRTGRCGNTG 638
>At2g47330 [A] KOG0339 ATP-dependent RNA helicase
Length = 748
Score = 95.1 bits (235), Expect = 3e-19
Identities = 93/399 (23%), Positives = 164/399 (40%), Gaps = 77/399 (19%)
Query: 192 AETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSKL 251
A+TGSGKT A+++P++ ++ M+ P E +D+ + +I PT EL Q++ K
Sbjct: 272 AKTGSGKTAAFVLPMIVHI----MDQP--ELQRDEGPI-GVICAPTRELAHQIFLEAKKF 324
Query: 252 EPALGMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQVKFL 311
A G+ G S + LK +I+V TPG+++ + + + + + +L
Sbjct: 325 SKAYGLRVSAVYGGMSKHEQFKELKAGCEIVVATPGRLIDMLKMKALT-----MMRASYL 379
Query: 312 VMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFCSATIPKEFQKTITRLFP-----TVGVI 366
V+DEAD + D + S + ++ L SAT+P + +K + TVG +
Sbjct: 380 VLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPWKVEKLAREILSDPIRVTVGEV 439
Query: 367 ASPNLHKINHKNQIKLINADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIFVNEKE 426
N I + +A+ P+ K + ID G V++F ++K
Sbjct: 440 GMAN-EDITQVVNVIPSDAEKLPWLLEKLPGM-----------IDEG---DVLVFASKKA 484
Query: 427 NVPLVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMK 486
V + +L V AL G+ R+E +
Sbjct: 485 TVDEIEAQLTLN-SFKVAALHGDKDQASRMETL--------------------------- 516
Query: 487 IPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRV 546
+ F VL+ TDV ARG++ + + VV YDI VHR+
Sbjct: 517 ---------------QKFKSGVHHVLIATDVAARGLDIKSLKTVVNYDIAKDMDMHVHRI 561
Query: 547 GRTGRMNQKGSV--FIITGKRVKNWVKAIPSIVSKNVSI 583
GRTGR + V ++T + + + + S+V+ ++
Sbjct: 562 GRTGRAGDRDGVAYTLVTQREARFAGELVNSLVAAGQNV 600
>7296165 [A] KOG0330 ATP-dependent RNA helicase
Length = 536
Score = 95.1 bits (235), Expect = 3e-19
Identities = 95/383 (24%), Positives = 158/383 (40%), Gaps = 75/383 (19%)
Query: 189 LIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTV 248
LIAAETG GKT+ YL+P+VD L + E+ T + R +IL P EL Q+
Sbjct: 150 LIAAETGCGKTITYLLPIVDKLLQKEV-----VTERKLNTPRVLILTPGRELATQIAGVT 204
Query: 249 SKLEPALGMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQV 308
KL + G++ + + +DI+V T G + L + + QV
Sbjct: 205 EKLTQGTNLKVQSLLGGNTKQLMMNPQFEEVDILVATLGALSKLVTTGIYR-----MEQV 259
Query: 309 KFLVMDEADTLLDKSWVED--------SYSTIKHMQNLNHVLFCSATIPKEFQKTITRLF 360
+ LV+DEADTLLD ++ + + ++ ++ SAT+P ++ + ++
Sbjct: 260 RHLVLDEADTLLDDTFTDKLSYFLRRFPFHLVQKEDAGTQMILASATMPTNTREILHKVI 319
Query: 361 --PTVGVIASPNLHKI-NHKNQIKLINADMAPYKGSKTKALAQILYSINRDNIDPGFEKR 417
T+ + SP+LH++ +H Q L + SK A +L + D +
Sbjct: 320 DVDTIREVVSPHLHRLMSHVTQKFL--------RLSKADRPATLLSLVKHDLAK---RRP 368
Query: 418 VVIFVNEKENVPLVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKV 477
+++F N+ V+ L N G + + L G+ ++ RL +
Sbjct: 369 LIVFSNKSTTSDFVSIFL-NNSGVNCLNLNGDMLMKIRLGRF------------------ 409
Query: 478 TTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPN 537
E F VL TTDV +RG++ R+VV +D P
Sbjct: 410 ------------------------EQFQNGHCDVLSTTDVGSRGLDTTRARHVVNFDFPL 445
Query: 538 TPVDLVHRVGRTGRMNQKGSVFI 560
D +HR GR GR+ +
Sbjct: 446 HVSDYIHRCGRIGRVGNMDKALV 468
>Hs4758138 [A] KOG0331 ATP-dependent RNA helicase
Length = 614
Score = 94.7 bits (234), Expect = 3e-19
Identities = 88/387 (22%), Positives = 158/387 (40%), Gaps = 66/387 (17%)
Query: 192 AETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSKL 251
A+TGSGKT++YL+P + ++ P E D I ++L PT EL +QV Q ++
Sbjct: 138 AQTGSGKTLSYLLPAIVHINH----QPFLER-GDGPIC--LVLAPTRELAQQVQQVAAEY 190
Query: 252 EPALGMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQVKFL 311
A + + G+ + L+ ++I + TPG+++ N L + +L
Sbjct: 191 CRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTN-----LRRTTYL 245
Query: 312 VMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFCSATIPKEFQKTITRLFPTVGVIASPNL 371
V+DEAD +LD + + ++ L SAT PKE ++ I L
Sbjct: 246 VLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL 305
Query: 372 HKINHKNQIKLINADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIFVNEKENVPLV 431
+ N +++++ K K L + + S E + ++FV K +
Sbjct: 306 ELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEK--------ENKTIVFVETKRRCDEL 357
Query: 432 ATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSN 491
K+ G + + G+ S +ER +
Sbjct: 358 TRKMRRD-GWPAMGIHGDKSQQER-----------------------------------D 381
Query: 492 IVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGR 551
V+ E F +L+ TDV +RG++ ++V+ YD PN+ D +HR+GRT R
Sbjct: 382 WVLNE-------FKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTAR 434
Query: 552 MNQKGSVFIITGKRVKNWVKAIPSIVS 578
+ G+ + N +K + ++S
Sbjct: 435 STKTGTAYTFF---TPNNIKQVSDLIS 458
>Hs13514813 [A] KOG0335 ATP-dependent RNA helicase
Length = 662
Score = 94.0 bits (232), Expect = 6e-19
Identities = 95/413 (23%), Positives = 169/413 (40%), Gaps = 83/413 (20%)
Query: 158 EFKKHLKPSPIQTTAI--YQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYL----- 210
E ++ +P+P+Q AI + + LM A+TGSGKT A+L+P++ +
Sbjct: 196 ELTRYTRPTPVQKHAIPIIKEKRDLM--------ACAQTGSGKTAAFLLPILSQIYSDGP 247
Query: 211 ---KRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSS 267
R EN + K I S++L PT EL Q+Y+ K + G+
Sbjct: 248 GEALRAMKENGRYGRRKQYPI--SLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGAD 305
Query: 268 YKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVED 327
+ L+ ++V TPG++ + M+ R L K+LV+DEAD +LD +
Sbjct: 306 IGQQIRDLERGCHLLVATPGRL-----VDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 360
Query: 328 SYSTIKH----MQNLNHVLFCSATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQIKLI 383
++ + + H + SAT PKE Q +A + + K++
Sbjct: 361 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 420
Query: 384 NADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDV 443
+ + K L +L + +D++ ++FV K+ + L ++ G+
Sbjct: 421 WVE----ESDKRSFLLDLLNATGKDSL-------TLVFVETKKGADSLEDFLYHE-GYAC 468
Query: 444 VALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEA 503
++ G+ S +R E + F + K P
Sbjct: 469 TSIHGDRSQRDREEALHQFR--------------------SGKSP--------------- 493
Query: 504 FVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKG 556
+LV T V ARG++ ++V+ +D+P+ + VHR+GRTGR+ G
Sbjct: 494 -------ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 539
>7296891 [A] KOG0341 DEAD-box protein abstrakt
Length = 619
Score = 94.0 bits (232), Expect = 6e-19
Identities = 89/387 (22%), Positives = 157/387 (39%), Gaps = 75/387 (19%)
Query: 192 AETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTV--- 248
A TGSGKT+ +++P++ + E P + +I+ P+ EL +Q ++ +
Sbjct: 221 AFTGSGKTLVFVLPVIMFALEQEYSLP----FERNEGPYGLIICPSRELAKQTHEIIQHY 276
Query: 249 SKLEPALGMHTYKWD---AGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRIL 305
SK A GM + G ++ + + I+V TPG+++ + + ++ L
Sbjct: 277 SKHLQACGMPEIRSCLAMGGLPVSEALDVISRGVHIVVATPGRLMDMLDKKILT-----L 331
Query: 306 SQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFCSATIPKEFQKTITRLF--PTV 363
++L MDEAD ++D + ED + + L SAT+PK+ Q P
Sbjct: 332 DMCRYLCMDEADRMIDMGFEEDVRTIFSFFKGQRQTLLFSATMPKKIQNFARSALVKPVT 391
Query: 364 GVIASPNLHKINHKNQIKLINADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIFVN 423
+ +N Q++ + K +A L + P V+IF
Sbjct: 392 INVGRAGAASMNVTQQVEYV----------KQEAKVVYLLDCLQKTAPP-----VLIFAE 436
Query: 424 EKENVPLVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTV 483
+K++V + L + G + VA+ G EER +
Sbjct: 437 KKQDVDCIHEYLLLK-GVEAVAIHGGKDQEERSRAV------------------------ 471
Query: 484 TMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLV 543
+A+ VLV TDV ++G++F ++V+ YD+P+ + V
Sbjct: 472 ------------------DAYRVGKKDVLVATDVASKGLDFPNVQHVINYDMPDDIENYV 513
Query: 544 HRVGRTGRMNQKGSVFIITGKRVKNWV 570
HR+GRTGR N KG + K + V
Sbjct: 514 HRIGRTGRSNTKGLATTLINKTTEQSV 540
>Hs21071032 [A] KOG0341 DEAD-box protein abstrakt
Length = 622
Score = 93.6 bits (231), Expect = 7e-19
Identities = 95/398 (23%), Positives = 160/398 (39%), Gaps = 77/398 (19%)
Query: 165 PSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETLK 224
P+PIQ I T++ + + + A TGSGKT+ + +P++ + E P
Sbjct: 204 PTPIQIQGI----PTILSGRDMIGI--AFTGSGKTLVFTLPVIMFCLEQEKRLP----FS 253
Query: 225 DKAIVRSIILLPTHELVEQV------YQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGR 278
+ +I+ P+ EL Q Y + + + + + G S K +E ++
Sbjct: 254 KREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHG 313
Query: 279 IDIMVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNL 338
+ +MV TPG+++ L MV+ L ++L +DEAD ++D + D + + +
Sbjct: 314 VHMMVATPGRLMDLLQKKMVS-----LDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQ 368
Query: 339 NHVLFCSATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQIKLINADMAPYKGSKTKAL 398
L SAT+PK+ Q + P + L Y K
Sbjct: 369 RQTLLFSATMPKKIQNF------AKSALVKPVTINVGRAGAASLDVIQEVEY----VKEE 418
Query: 399 AQILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSVEERLEK 458
A+++Y + P V+IF +K +V + L + G + VA+ G EER +
Sbjct: 419 AKMVYLLECLQKTP---PPVLIFAEKKADVDAIHEYLLLK-GVEAVAIHGGKDQEERTKA 474
Query: 459 IKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVL 518
I EAF E VLV TDV
Sbjct: 475 I------------------------------------------EAFREGKKDVLVATDVA 492
Query: 519 ARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKG 556
++G++F ++V+ YD+P + VHR+GRTGR G
Sbjct: 493 SKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTG 530
>CE27728 [A] KOG0346 RNA helicase
Length = 634
Score = 92.8 bits (229), Expect = 1e-18
Identities = 125/481 (25%), Positives = 211/481 (42%), Gaps = 39/481 (8%)
Query: 94 GKLSEGDPKILERSKRLVSKINDFSQLKILPEVRDKLMEVISSESLLNKNLLDVKYNPKE 153
GK E ++ ++++ + + K E R KLME SL+ + ++ + P+
Sbjct: 34 GKKIEVSVELRDKNEEKMGRKRKHRMKKSQAEKRQKLME-----SLVGPQVDEMDFEPEH 88
Query: 154 NNVQEF---KKHLKP-SPIQTTAIYQTSKTLMDPQLQVRLIA--AETGSGKTMAYLIPLV 207
+F ++ LK + Q ++++ L+ + I A TGSGKT A+LIPLV
Sbjct: 89 KTFADFGLDERILKSIGELGWEKANQVQESVISLALENKNIMGRARTGSGKTGAFLIPLV 148
Query: 208 DYLKRTEMENPSWETLKDKAIVRS-IILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGS 266
L N D ++ S +I+ PT EL+ Q+Y+ KL AL
Sbjct: 149 QKLIAESKTN-------DGSVGPSAVIIAPTKELITQIYKLFVKLSQALPFLQAINLCDI 201
Query: 267 SYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVE 326
+ + L+ R ++VTTPGK+L + ++ RP+ + V +LVMDEAD LL + E
Sbjct: 202 NEEENSVWLEDRSHVVVTTPGKLLRMCSL----RPE-YCTLVSYLVMDEADLLLSFGYEE 256
Query: 327 DSYSTIKHMQNLNHVLFCSATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQIKLINAD 386
+ + L SAT+ K+ T+ +LF T G + + L + + N +L
Sbjct: 257 EMIKIRSKLPPTYQCLMTSATL-KDDMTTLKKLFMT-GPVITIKLTEGDLPNSDQLTQYQ 314
Query: 387 MAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVAL 446
+ GS + A IL ++ + + G R ++FVN + + + +G L
Sbjct: 315 LT--CGSDEERFA-ILVAMFKLKLIVG---RSILFVNTIDRCYKLML-ILRVFGLKSCIL 367
Query: 447 TGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVE 506
R I F + ++ + + +I + +E PE +E +
Sbjct: 368 NSAMPANSRCHVINQFNEGSYQIVIASDVSDADGSKLKEEIAGKS---DEKPEKDEKKGK 424
Query: 507 STLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKGSV--FIITGK 564
K+ + V +RGI+F VV +D P T +HRVGRT R KG+ F I +
Sbjct: 425 KASKLDKESGV-SRGIDFHHVSNVVNFDFPETTDAYIHRVGRTARGFNKGTALSFCIPSE 483
Query: 565 R 565
R
Sbjct: 484 R 484
>CE25121 [A] KOG0335 ATP-dependent RNA helicase
Length = 763
Score = 92.8 bits (229), Expect = 1e-18
Identities = 99/404 (24%), Positives = 164/404 (40%), Gaps = 78/404 (19%)
Query: 169 QTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAI 228
+TT I Q + L+ + + A+TGSGKT A+L+P++ L N + E
Sbjct: 363 KTTPIQQYALPLVHQGYDI-MACAQTGSGKTAAFLLPIMTRLIDDNNLNTAGE---GGCY 418
Query: 229 VRSIILLPTHELVEQV--------YQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRID 280
R IIL PT EL +Q+ YQT+ +++P G ++ G KG
Sbjct: 419 PRCIILTPTRELADQIYNEGRKFAYQTMMEIKPVYGGLAVGYNKGQIEKG--------AT 470
Query: 281 IMVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNL-- 338
I+V T G+I + L + +F V+DEAD ++D TI + ++
Sbjct: 471 IIVGTVGRIKHFCEEGTIK-----LDKCRFFVLDEADRMIDAMGFGTDIETIVNYDSMPR 525
Query: 339 ---NHVLFCSATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQIKLINADMAPYKGSKT 395
L SAT P Q+ V+ + + KI N+ L + K
Sbjct: 526 KENRQTLMFSATFPDSVQEAARAFLRENYVMIA--IDKIGAANKCVLQEFERCERSEKKD 583
Query: 396 KALAQILYSINRDNIDPGFE---KRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSV 452
K L + I+ + E K+ ++FV+++ +A+ L++ V A+T + +
Sbjct: 584 KLLELLGIDIDSYTTEKSAEVYTKKTMVFVSQRAMADTLASILSSA---QVPAITIHGAR 640
Query: 453 EERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVL 512
E+R E E F + VL
Sbjct: 641 EQR----------------------------------------ERSEALRQFRNGSKPVL 660
Query: 513 VTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKG 556
+ T V RG++ +G +V+ YD+P+ D +HR+GRTGR+ G
Sbjct: 661 IATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTGRVGNSG 704
>YLR276c [A] KOG0346 RNA helicase
Length = 594
Score = 92.0 bits (227), Expect = 2e-18
Identities = 112/408 (27%), Positives = 187/408 (45%), Gaps = 50/408 (12%)
Query: 192 AETGSGKTMAYLIPLVDYL---KRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTV 248
A TGSGKT+AYLIP+++ + K+T TL IIL+PT EL +QVY +
Sbjct: 62 AATGSGKTLAYLIPVIETILEYKKTIDNGEENGTL-------GIILVPTRELAQQVYNVL 114
Query: 249 SKLEP--ALGMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILS 306
KL + + T + S L + +I+V TPGK+L L + + L+
Sbjct: 115 EKLVLYCSKDIRTLNISSDMSDSVLSTLLMDQPEIIVGTPGKLLDLLQTKINSIS---LN 171
Query: 307 QVKFLVMDEADTLLDKSWVEDSYSTIKHM---QNLNHVLFCSATIPKEFQKTITRLFPTV 363
++KFLV+DE D +L + +D +++ +NL L SAT+ + Q + + F
Sbjct: 172 ELKFLVVDEVDLVLTFGYQDDLNKIGEYLPLKKNLQTFLM-SATLNDDIQ-ALKQKFCRS 229
Query: 364 GVIASPNLHKINHKNQIKLINADMAPYKGSKTKALAQILYSINR---------DNIDPGF 414
I N +IN KNQ KL+ + + K L +++ +N +NID G+
Sbjct: 230 PAILKFNDEEIN-KNQNKLLQYYVKVSEFDKF-LLCYVIFKLNLIKGKTLIFVNNIDRGY 287
Query: 415 EKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKS 474
++V+ ++ L + N H V D + + ++ D + +
Sbjct: 288 RLKLVMEQFGIKSCILNSELPVNSRQHIV------DQFNKNVYQLLIATDDTEYIKEEDD 341
Query: 475 EKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDV---LARGINFRGCRYVV 531
E NT + + +E PE N+ KV V D ++RG++F+ V+
Sbjct: 342 EIEEGHNTENQEEKS----LEGEPE-NDKKPSKKKKVQVKKDKEYGVSRGVDFKNVACVL 396
Query: 532 LYDIPNTPVDLVHRVGRTGRMNQKGSV--FIITGKRVKNWVKAIPSIV 577
+D+P T VHRVGRT R + G+ F++ +K + K PS++
Sbjct: 397 NFDLPTTAKSYVHRVGRTARGGKTGTAISFVVP---LKEFGKHKPSML 441
>SPBC4F6.07c [A] KOG0347 RNA helicase
Length = 648
Score = 92.0 bits (227), Expect = 2e-18
Identities = 97/433 (22%), Positives = 174/433 (39%), Gaps = 79/433 (18%)
Query: 164 KPSPIQTTAIYQTSKTLMDPQLQVRLIA-AETGSGKTMAYLIPLVDYLKRTEMENPSWET 222
KP PIQ+ I + S + +I A+TGSGKT+A+ IP++++ R
Sbjct: 144 KPMPIQSLVIPEAS-------IGFDIIGKADTGSGKTLAFGIPILEHCLRNV-------- 188
Query: 223 LKDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRIDIM 282
D V+++++ PT EL Q+ Q ++P+ + G + + L ++
Sbjct: 189 --DAKYVQALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVV 246
Query: 283 VTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNH-- 340
V TPG++ S+ N N ++K LV+DEAD LL KS E+ ++ + N H
Sbjct: 247 VATPGRLWSVIN---ENNLTGNFKKIKCLVLDEADRLLQKSHFEELSKLLEILGNPMHTQ 303
Query: 341 --VLFCSATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQIKLIN----ADMAPYKGSK 394
SAT + Q+ + + + N N +++ D P
Sbjct: 304 RQTFIFSATFDEGLQQRLKKNMKG-NITEKYNSPMENMLKEVRFFGKPKFLDANPQSAVA 362
Query: 395 TKALAQILYSINRDN------IDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTG 448
++ L ++ + + + + ++F N E++ + T N+ L
Sbjct: 363 SRVLEGLIECAPAEKDLYLYYLIMRYPGKTMVFANGIEDIKRI-TPFLNELKVPSYPLHA 421
Query: 449 NDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVEST 508
++RL+ ++ F + PK
Sbjct: 422 QLDQKKRLQSLEKFKNNPK----------------------------------------- 440
Query: 509 LKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKGSVFIITGKRVKN 568
VLV TDV ARGI+ +V+ Y +P+T VHR GRT R N+ G ++ G + +
Sbjct: 441 -GVLVCTDVAARGIDIPSVTHVIHYHVPHTADMYVHRSGRTARANEDGVSILMCGPKELS 499
Query: 569 WVKAIPSIVSKNV 581
+K + + K +
Sbjct: 500 QLKRLCYRLKKKI 512
>Hs7662318 [A] KOG0334 RNA helicase
Length = 1032
Score = 91.7 bits (226), Expect = 3e-18
Identities = 98/408 (24%), Positives = 169/408 (41%), Gaps = 75/408 (18%)
Query: 156 VQEFKKH--LKPSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRT 213
+ KKH KP+PIQT AI +M + + + A+TGSGKT+A+L+P+ ++
Sbjct: 384 LNSLKKHGYEKPTPIQTQAI----PAIMSGRDLIGI--AKTGSGKTIAFLLPMFRHI--- 434
Query: 214 EMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVE 273
M+ S E + ++I+ PT EL Q+ + K LG+ G+ +
Sbjct: 435 -MDQRSLEEGEGPI---AVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIA 490
Query: 274 ALKGRIDIMVTTPGKILSLF--NISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYST 331
LK +I+V TPG+++ + N V L +V ++V+DEAD + D +
Sbjct: 491 ELKRGAEIIVCTPGRMIDMLAANSGRVTN----LRRVTYVVLDEADRMFDMGFEPQVMRI 546
Query: 332 IKHMQNLNHVLFCSATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQIKLINADMAPYK 391
+ +++ + SAT P+ + R +++ +
Sbjct: 547 VDNVRPDRQTVMFSATFPRAMEALARR-----------------------ILSKPIEVQV 583
Query: 392 GSKTKALAQILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDS 451
G ++ + + E++V++ EK+ + L+ +L Y + D
Sbjct: 584 GGRSVVCSDV-------------EQQVIVIEEEKKFLKLL--ELLGHYQESGSVIIFVDK 628
Query: 452 VEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKV 511
E +K M R S + + + +I+ + F T K+
Sbjct: 629 QEHADGLLKDLM--------RASYPCMSLHGGIDQYDRDSIIND--------FKNGTCKL 672
Query: 512 LVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKGSVF 559
LV T V ARG++ + VV Y PN D VHR GRTGR KG +
Sbjct: 673 LVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAY 720
>At1g77050 [A] KOG0337 ATP-dependent RNA helicase
Length = 513
Score = 91.7 bits (226), Expect = 3e-18
Identities = 104/419 (24%), Positives = 177/419 (41%), Gaps = 93/419 (22%)
Query: 151 PKENNVQEFKKHLKPSPIQTTAIYQTSKTLMDPQLQVRLIA-AETGSGKTMAYLIPLVDY 209
P N + K + P+PIQ KT+ V ++A A TGSGKT A+LIP+++
Sbjct: 37 PNVFNAIKKKGYKVPTPIQR-------KTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK 89
Query: 210 LKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYK 269
LK+ + VR++IL PT +L EQ + +L + G S +
Sbjct: 90 LKQHVPQGG----------VRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSME 139
Query: 270 GFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSY 329
E L D+++ TPG+++ L +S V+ D L V+++V DEAD+L + E +
Sbjct: 140 DQFEELTKGPDVIIATPGRLMHL--LSEVD--DMTLRTVEYVVFDEADSLFGMGFAEQLH 195
Query: 330 STIKHMQNLNHVLFCSATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQI----KLINA 385
+ + L SAT+P + F G + P L +++ +N+I KL
Sbjct: 196 QILTQLSENRQTLLFSATLPSALAE-----FAKAG-LREPQLVRLDVENKISPDLKLSFL 249
Query: 386 DMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVA 445
+ P + + +LY + R++I +++ +IFV+ K +V V +
Sbjct: 250 TVRP-----EEKYSALLYLV-REHISS--DQQTLIFVSTKHHVEFVNSLF---------- 291
Query: 446 LTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFV 505
+LE I+P ++ ++ +D
Sbjct: 292 ---------KLENIEP-----------------------------SVCYGDMDQDARKIH 313
Query: 506 ESTLK-----VLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKGSVF 559
S + +L+ TD+ ARGI+ V+ +D P P VHRVGR R + G +
Sbjct: 314 VSRFRARKTMLLIVTDIAARGIDIPLLDNVINWDFPPRPKIFVHRVGRAARAGRTGCAY 372
>Hs13787206 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 670
Score = 91.3 bits (225), Expect = 4e-18
Identities = 97/375 (25%), Positives = 160/375 (41%), Gaps = 67/375 (17%)
Query: 189 LIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTV 248
L AA+TGSGKT+A+LIP V+ + + + + +IL PT EL Q + +
Sbjct: 220 LAAAKTGSGKTLAFLIPAVELIVKLRFMTRNGTGV--------LILSPTRELAMQTFGVL 271
Query: 249 SKLEPALGMHTYKWDAGSSYKGF-VEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQ 307
+L +HTY G S + + L I+I+V TPG++L M N P +
Sbjct: 272 KEL-MTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLD----HMQNTPGFMYKN 326
Query: 308 VKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFCSATIPKEFQKTITRLFPTVGVIA 367
++ LV+DEAD +LD + E+ IK + + SAT ++ +
Sbjct: 327 LQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVE-------------- 372
Query: 368 SPNLHKINHKNQIKLINADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIFVNEKEN 427
+L +I+ K + + D KA A + G E+ V+ +EK
Sbjct: 373 --DLARISLKKEPLYVGVD-------DDKANATV----------DGLEQGYVVCPSEKRF 413
Query: 428 VPLVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKI 487
+ L N+ +V + SV+ E + ++D P + +K T +
Sbjct: 414 LLLFTFLKKNRKKKLMVFFSSCMSVKYHYELLN-YIDLP-VLAIHGKQKQNKRTTTFFQ- 470
Query: 488 PNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVG 547
F + L+ TDV ARG++ ++V YD P+ P + +HRVG
Sbjct: 471 ----------------FCNADSGTLLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVG 514
Query: 548 RTGR-MNQKGSVFII 561
RT R +N +G +I
Sbjct: 515 RTARGLNGRGHALLI 529
>CE09012 [A] KOG0335 ATP-dependent RNA helicase
Length = 974
Score = 91.3 bits (225), Expect = 4e-18
Identities = 98/404 (24%), Positives = 164/404 (40%), Gaps = 78/404 (19%)
Query: 169 QTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAI 228
+TT I Q + L+ + + A+TGSGKT A+L+P+ + R EN +
Sbjct: 574 KTTPIQQYTLPLIHQGHDI-MACAQTGSGKTAAFLLPI---MARLIDENDLNTAGEGGCY 629
Query: 229 VRSIILLPTHELVEQV--------YQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRID 280
R IIL PT EL +Q+ YQT+ ++ P G ++ G KG
Sbjct: 630 PRCIILTPTRELTDQIYNEGRKFAYQTMMEIRPVYGGLAVGYNKGQIEKG--------AT 681
Query: 281 IMVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNL-- 338
I+V T G+I + L + +F V+DEAD ++D TI + +++
Sbjct: 682 IIVGTVGRIKHFCEEGTIK-----LDKCRFFVLDEADRMIDAMGFGTDIDTIVNYESMPK 736
Query: 339 ---NHVLFCSATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQIKLINADMAPYKGSKT 395
L SAT P Q+ ++ + + KI N+ L + K
Sbjct: 737 KENRQTLMFSATFPDSVQEAARNHLKEGYIMLA--IDKIGAANKCVLQEFEKCDRSEKKD 794
Query: 396 KALAQILYSINRDNIDPGFE---KRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSV 452
K L + I+ + E K+ ++FV+++ +A+ L++ V A+T + +
Sbjct: 795 KLLEILGIDIDSYTTEKNSEVYTKKTIVFVSQRAMADTLASILSSA---QVPAITIHGAR 851
Query: 453 EERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVL 512
E+R E E F + VL
Sbjct: 852 EQR----------------------------------------ERSEALRQFRNGSKPVL 871
Query: 513 VTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKG 556
+ T V RG++ +G +V+ YD+P+ D +HR+GRTGR+ G
Sbjct: 872 IATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTGRVGNAG 915
>7294064 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 687
Score = 91.3 bits (225), Expect = 4e-18
Identities = 103/417 (24%), Positives = 173/417 (40%), Gaps = 58/417 (13%)
Query: 190 IAAETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVS 249
++A TGSGKT+A+ IP+V L + + VR++++LP EL QVY+ +S
Sbjct: 188 VSAPTGSGKTLAFAIPIVQLLSQ-----------RVDCKVRALVVLPVAELALQVYRVIS 236
Query: 250 KL------EPALGMHTYKWDAGSSYKGFVEALKGRI----DIMVTTPGKILSLFNISMVN 299
+L E L +K + + VE KG+ DI+VTTPG+++ + +
Sbjct: 237 ELCSKTELEVCLLSKQHKLE--DEQEKLVEQYKGKYYSKADIVVTTPGRLVDHLHATK-- 292
Query: 300 RPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLF-------CSATIPKEF 352
L +KFLV+DEAD ++D + Y H++ L C A + F
Sbjct: 293 --GFCLKSLKFLVIDEADRIMDAVFQNWLYHLDSHVKETTDQLLAGTQAPLCYAELQASF 350
Query: 353 QKTITRLFPTVGVIASPNLHKINHKNQIKLINADM-------APYKGSKTKALAQILYSI 405
K +L + + P + Q +L + A +G+ T+AL +
Sbjct: 351 GKQPHKLLFSATLSQDPEKLQDLRLFQPRLFATVLTMPVLKDATEEGADTEALTDPGQFV 410
Query: 406 NRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHD-VVALTGNDSVEERLEKIKPFMD 464
R ++ V E PL L +Y + T + RL + +
Sbjct: 411 GRYTTPAELTEQYC--VTELRLKPLTVFALVEKYKWKRFLCFTNSSDQATRLTFVLKVLF 468
Query: 465 PPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINF 524
+K +T+ SE ++ K+ N + F + L+ +D LARGI+
Sbjct: 469 --QKYSTKVSE---LSGNLSAKVRNERL---------RDFAAGKINGLICSDALARGIDV 514
Query: 525 RGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKGSVFIITGKRVKNWVKAIPSIVSKNV 581
V+ Y+ P +HRVGRT R +KG+ + ++ K I S +K +
Sbjct: 515 ADVDVVLSYETPRHITTYIHRVGRTARAGRKGTAVTVLTEQDMTLFKKILSDANKGL 571
>7291960_2 [A] KOG0337 ATP-dependent RNA helicase
Length = 883
Score = 91.3 bits (225), Expect = 4e-18
Identities = 117/469 (24%), Positives = 193/469 (40%), Gaps = 80/469 (17%)
Query: 97 SEGDPKILERSKRLVSKINDFSQLKILPEVRDKLMEVISSESLLNKNLLDVKYNPKENNV 156
SE D E K+ +I F L D+ +++ S+S NK+ +
Sbjct: 48 SEADLDFGEDRKKQADEIPGFPSLDNDAGTSDRGADILKSKSKKNKSGGFQSMGLGFELI 107
Query: 157 QEFKK--HLKPSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRTE 214
+ K + P+PIQ +T +++ + V + A+TGSGKT +LIPL + L+R E
Sbjct: 108 KGITKRGYKVPTPIQR----KTIPLILEGRDVVAM--AKTGSGKTACFLIPLFEKLQRRE 161
Query: 215 MENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEA 274
+ R++IL PT EL Q Y+ + +L + + + G S A
Sbjct: 162 PTKGA----------RALILSPTRELAVQTYKFIKELGRFMELKSILVLGGDSMDSQFSA 211
Query: 275 LKGRIDIMVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKH 334
+ D++V TPG+ L L + M D L+ ++++V DEAD L + + E T+
Sbjct: 212 IHTCPDVIVATPGRFLHLC-VEM----DLKLNSIEYVVFDEADRLFEMGFGEQLNETLHR 266
Query: 335 MQNLNHVLFCSATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQIKLINADMAPY--KG 392
+ + + SAT+PK + F G + P L +++ ++++ A Y
Sbjct: 267 LPSSRQTVMFSATLPKLLVE-----FARAG-LNDPVLIRLDVESKLPDALALKFLYCRPD 320
Query: 393 SKTKALAQILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSV 452
+ AL +L + + + V+F + +V L++ L A N SV
Sbjct: 321 DRYTALVVLLKYV------IPVQSQTVVFAGTQHHVELISYILTE-------AGISNASV 367
Query: 453 EERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVL 512
L DP + K+ T V K+ VL
Sbjct: 368 YSSL-------DP-------AARKINTAKFVNKKV----------------------SVL 391
Query: 513 VTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKGSVFII 561
+ TDV ARGI+ +VV P P VHRVGR R + G+ + I
Sbjct: 392 IVTDVAARGIDIPSLDFVVNLHFPGKPKLFVHRVGRCARAGRTGTAYSI 440
>Hs13514809 [A] KOG0335 ATP-dependent RNA helicase
Length = 660
Score = 90.9 bits (224), Expect = 5e-18
Identities = 95/412 (23%), Positives = 169/412 (40%), Gaps = 81/412 (19%)
Query: 158 EFKKHLKPSPIQTTAI--YQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRTEM 215
E ++ +P+P+Q AI + + LM A+TGSGKT A+L+P++ + T+
Sbjct: 194 ELTRYTRPTPVQKHAIPIIKGKRDLM--------ACAQTGSGKTAAFLLPILSQI-YTDG 244
Query: 216 ENPSWETLKD-------KAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSY 268
+ + +K+ K S++L PT EL Q+Y+ K + G+
Sbjct: 245 PGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADI 304
Query: 269 KGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDS 328
+ L+ ++V TPG++ + M+ R L K+LV+DEAD +LD +
Sbjct: 305 GQQIRDLERGCHLLVATPGRL-----VDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI 359
Query: 329 YSTIKH----MQNLNHVLFCSATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQIKLIN 384
++ + + H + SAT PKE Q +A + + K++
Sbjct: 360 RRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVW 419
Query: 385 ADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVV 444
+ K L IL + D++ ++FV K+ + L ++ G+
Sbjct: 420 VEDL----DKRSFLLDILGATGSDSL-------TLVFVETKKGADSLEDFLYHE-GYACT 467
Query: 445 ALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAF 504
++ G+ S +R E + F + K P
Sbjct: 468 SIHGDRSQRDREEALHQFR--------------------SGKSP---------------- 491
Query: 505 VESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKG 556
+LV T V ARG++ R+V+ +D+P+ + VHR+GRTGR+ G
Sbjct: 492 ------ILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLG 537
>CE06239 [A] KOG0344 ATP-dependent RNA helicase
Length = 581
Score = 90.9 bits (224), Expect = 5e-18
Identities = 112/493 (22%), Positives = 209/493 (41%), Gaps = 92/493 (18%)
Query: 97 SEGDPKILERSKRLVSKINDFSQLKILPEVRDKLMEVIS--SESLLNKNLLDVKYNPKEN 154
+E + + + KR+ ++D + + D L +I S+S ++ +LL+ EN
Sbjct: 88 NEVEETVGDVEKRMQKLLDDIRRTNRIFTWGDHLPNIILRFSDSSMSPSLLN---RLSEN 144
Query: 155 NVQEFKKHLKPSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRTE 214
++++ PSPIQ +I M + V L +A TGSGKT+A+ +P++D + E
Sbjct: 145 SIRQ------PSPIQMQSI-----PFMTERRNV-LASAPTGSGKTLAFALPVIDEI--LE 190
Query: 215 MENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEA 274
++ + + + + + +++L PT EL Q Y K + + +++ G
Sbjct: 191 LKQRADYSSSNSSKLLAVVLEPTRELAAQTYTEFLKYCANTSI------SAANFSGEETD 244
Query: 275 LKGRIDIMVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLL------DKSWVEDS 328
++ DI+V+TP +I +F++ ++ S +++LV+DE+D L DK +
Sbjct: 245 IQ-HADILVSTPNRI--VFHLDKID-----TSSLRWLVVDESDRLFEVVEGQDKCFRNQL 296
Query: 329 YSTIKHMQ-NLNHVLFCSATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQIKLINADM 387
+ K V F SAT E +K +G++ + N + KL
Sbjct: 297 AAIYKACDAKCTRVAFFSATFSHEVEKWCKENIDEIGMVCVGERNSSNTSVKQKL----- 351
Query: 388 APYKGSKTKALAQILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALT 447
Y G++ I R+ + F+ ++FV K+
Sbjct: 352 -TYCGTEDGKKIAI-----RNLLRTSFKPPALVFVQSKDRA------------------- 386
Query: 448 GNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVES 507
+L K+ +D K+ + S K E TM E F
Sbjct: 387 ------VQLVKLLSAIDSNLKVDSINSGKSDKERDETM----------------ERFRRG 424
Query: 508 TLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKGSVFIITGKRVK 567
+ VLV T++L RG++ V+ YD+P + V +HRVGRTGR + G
Sbjct: 425 EIWVLVCTELLGRGLDLSDVGLVINYDLPTSIVSYIHRVGRTGRAGKSGHAVTYFTDADM 484
Query: 568 NWVKAIPSIVSKN 580
++K+I +++ ++
Sbjct: 485 KYIKSIATVIRQS 497
>SPCC10H11.01 [A] KOG0334 RNA helicase
Length = 1014
Score = 90.5 bits (223), Expect = 6e-18
Identities = 96/385 (24%), Positives = 171/385 (43%), Gaps = 77/385 (20%)
Query: 192 AETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSKL 251
A+TGSGKT+A+L+P+ ++K LK +II+ PT EL Q+++
Sbjct: 462 AKTGSGKTIAFLLPMFRHIK-------DQRPLKTGEGPIAIIMTPTRELAVQIFRECKPF 514
Query: 252 EPALGMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQVKFL 311
L + G+ K + LK +I+V TPG+++ + + + + L + +L
Sbjct: 515 LKLLNIRACCAYGGAPIKDQIADLKRGAEIVVCTPGRMIDVLSANAGRVTN--LHRCTYL 572
Query: 312 VMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFCSATIPKEFQKTITRLFP-----TVG-- 364
V+DEAD + D + I +++ + SAT P+ + ++ TVG
Sbjct: 573 VLDEADRMFDLGFEPQVMRIINNIRPDRQTVLFSATFPRAMEALARKVLKKPVEITVGGR 632
Query: 365 -VIASPNLHKINHKNQIKLINADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIFVN 423
V+AS +++ I ++ P + SK L ++L + + +D R ++FV+
Sbjct: 633 SVVAS----------EVEQI-VEVRP-EESKFSRLLELLGELYNNQLD----VRTLVFVD 676
Query: 424 EKENVPLVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTV 483
+E+ + + L + G+ ++ G +R ++T+
Sbjct: 677 RQESADALLSDLMKR-GYTSNSIHGGKDQHDR------------------------DSTI 711
Query: 484 TMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLV 543
+ D +A V VL+ T V+ARG++ + + VV YD PN D V
Sbjct: 712 S---------------DYKAGV---FDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYV 753
Query: 544 HRVGRTGRMNQKG-SVFIITGKRVK 567
HRVGRTGR G +V IT ++ K
Sbjct: 754 HRVGRTGRAGHTGVAVTFITPEQEK 778
>Hs13514831 [A] KOG0343 RNA Helicase
Length = 875
Score = 90.5 bits (223), Expect = 6e-18
Identities = 91/371 (24%), Positives = 150/371 (39%), Gaps = 64/371 (17%)
Query: 191 AAETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSK 250
AA+TGSGKT+A+L+P+++ L R + W + + +I+ PT EL Q ++ + K
Sbjct: 112 AAKTGSGKTLAFLVPVLEALYRLQ-----WTSTDGLGV---LIISPTRELAYQTFEVLRK 163
Query: 251 LEPALGMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQVKF 310
+ G K E + I+I+V TPG++L M + ++
Sbjct: 164 VGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQ----HMDETVSFHATDLQM 218
Query: 311 LVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFCSATIPKEFQKTITRLFPTVGVIASPN 370
LV+DEAD +LD + + + I+++ L SAT K K + RL + +P
Sbjct: 219 LVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSV-KDLARL-----SLKNPE 272
Query: 371 LHKINHKNQIKLINADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIFVNEKENVPL 430
++ K + Y + + +LYS R ++ +K +V F + KE L
Sbjct: 273 YVWVHEKAKYSTPATLEQNYIVCELQQKISVLYSFLRSHLK---KKSIVFFSSCKEVQYL 329
Query: 431 VATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNS 490
+ G ++AL G R+E
Sbjct: 330 YRVFCRLRPGVSILALHGRQQQMRRME--------------------------------- 356
Query: 491 NIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTG 550
V E FV VL TD+ ARG++F +V+ +D P +HR GRT
Sbjct: 357 --VYNE-------FVRKRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTA 407
Query: 551 RMNQKGSVFII 561
R + G +I
Sbjct: 408 RYKEDGEALLI 418
>ECU02g0670 [A] KOG0335 ATP-dependent RNA helicase
Length = 503
Score = 90.5 bits (223), Expect = 6e-18
Identities = 99/400 (24%), Positives = 180/400 (44%), Gaps = 87/400 (21%)
Query: 192 AETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSKL 251
A TG GKTM +LIP+++ + +M+ P ++ I+ PT EL EQ+ SKL
Sbjct: 141 APTGMGKTMCFLIPIIE--RHRQMKKP-----------QACIISPTRELCEQIRVEASKL 187
Query: 252 EPA-----LGMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILS 306
+ ++ K D SY G +DI+V TPG+++ L + V+ LS
Sbjct: 188 VAGSRIRVVSIYGKKQDL-PSYSG--------VDIVVATPGRLIDLLHRKKVD-----LS 233
Query: 307 QVKFLVMDEADTLLDKSW---VEDSYSTIKHMQNLNHVLFCSATIPKEFQKTITRLFPTV 363
+++ V+DEAD LLD + + + + + +N LF + PK +TR+
Sbjct: 234 EIRMFVLDEADKLLDMGFEIPIREIHGFVP--KNTQTCLFSATYSPK-----LTRM---- 282
Query: 364 GVIASPNLHKINHKNQIKLINADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIFVN 423
IN+ P + ++ L +I ++ ++ +K++++ +
Sbjct: 283 ----------INY----------FLPEDKVSIEISSETLKNIRQEIVEVRNKKKMLLNIL 322
Query: 424 EKENVPLVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTV 483
+ G D + L G+ +E + +K+ F++ +K + EKV ++ +
Sbjct: 323 K---------------GPD-INLKGSWRMEVQPDKVLVFVE--RKSECGEVEKVLKKSGI 364
Query: 484 TMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLV 543
+ + + E + F V+V T V ARGI+ + + V+ YDIP + +
Sbjct: 365 LCVSLHGDKEQADRDEALKGFRNGRFPVMVATSVAARGIDIKDVKLVINYDIPKDIKEYI 424
Query: 544 HRVGRTGRMNQKG-SVFIITGKRVKNWVKAIPSIV--SKN 580
HR+GRTGR + G S+ G + KA+ ++ SKN
Sbjct: 425 HRIGRTGREGKSGKSISFYDGGMTADLKKALVEVLRESKN 464
>At1g72730 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 414
Score = 90.5 bits (223), Expect = 6e-18
Identities = 99/395 (25%), Positives = 170/395 (42%), Gaps = 81/395 (20%)
Query: 164 KPSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETL 223
KPS IQ I K L Q A++G+GKT + ++ L + ++
Sbjct: 63 KPSAIQQRGIIPFCKGLDVIQ------QAQSGTGKTATFCSGVLQQLDISLVQ------- 109
Query: 224 KDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRIDIMV 283
++++L PT EL +Q+ + + L LG+ G+S + L+ + ++V
Sbjct: 110 -----CQALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQSGVHVVV 164
Query: 284 TTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLF 343
TPG++ L + R +K V+DEAD +L + + + Y + + + V
Sbjct: 165 GTPGRVFDL-----LRRQSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGV 219
Query: 344 CSATIPKEFQKTITRLF--PTVGVIASPNLHKINHKNQIKLINADMAPYKGSKTKALAQI 401
SAT+P E + ITR F V ++ + + Q +N D +K L +
Sbjct: 220 FSATMPPEALE-ITRKFMNKPVRILVKRDELTLEGIKQF-YVNVDKEEWKLETLCDLYET 277
Query: 402 LYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSVEERLEKIKP 461
L +I + VIFVN + V + K+ ++ H V A G+
Sbjct: 278 L-AITQS----------VIFVNTRRKVDWLTDKMRSR-DHTVSATHGD------------ 313
Query: 462 FMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARG 521
MD +NT +I++ E F + +VL+TTD+LARG
Sbjct: 314 -MD---------------QNT-------RDIIMRE-------FRSGSSRVLITTDLLARG 343
Query: 522 INFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKG 556
I+ + V+ +D+P P + +HR+GR+GR +KG
Sbjct: 344 IDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKG 378
>SPAC1093.05 [A] KOG0343 RNA Helicase
Length = 735
Score = 90.1 bits (222), Expect = 8e-18
Identities = 93/386 (24%), Positives = 170/386 (43%), Gaps = 66/386 (17%)
Query: 191 AAETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSK 250
AA+TGSGKT+A+++PL++ L R + W +L + ++++ PT EL Q ++T+ K
Sbjct: 82 AAKTGSGKTLAFIVPLIENLYRKK-----WTSLDG---LGALVISPTRELAIQTFETLVK 133
Query: 251 LEPALGMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQVKF 310
+ G++YK E L R++I+V TPG++L +I D S ++
Sbjct: 134 IGRLHSFSAGLIIGGNNYKEEKERL-SRMNILVCTPGRLLQ--HIDQAVNFD--TSGLQM 188
Query: 311 LVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFCSATIPKEFQKTITRLFPTVGVIASPN 370
L++DEAD +LD + + + + + SAT K K + RL + +P+
Sbjct: 189 LILDEADRILDMGFRTTLDAIVSSLPVHRQTMLFSATQTKSV-KDLARL-----SLQNPD 242
Query: 371 LHKINHKNQIKLINADMAP-YKGSKTKALAQILYSINRDNIDPGFEKRVVIFVNEKENVP 429
+ H+N +++ Y IL+ R ++ + + ++F++ + V
Sbjct: 243 FISV-HENDTSSTPSNLNQFYLTVPLTEKLDILFGFIRTHL----KFKTIVFLSSCKQVR 297
Query: 430 LVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPN 489
V E +++P + + +K TT VT K +
Sbjct: 298 F---------------------VYETFRRMRPGI---SLLHLHGKQKQTTRTEVTAKFTS 333
Query: 490 SNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRT 549
S V VL TD++ARG++F +V+ D P +HRVGRT
Sbjct: 334 SRHV-----------------VLFCTDIVARGLDFPAVDWVIQLDAPEDVDTYIHRVGRT 376
Query: 550 GRMNQKGSVFIITGKRVKNWVKAIPS 575
R N+ G+ ++ + ++K + S
Sbjct: 377 ARYNRSGNALLLLLPSEEAFLKRLES 402
>Hs4503529 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 406
Score = 90.1 bits (222), Expect = 8e-18
Identities = 93/421 (22%), Positives = 175/421 (41%), Gaps = 82/421 (19%)
Query: 164 KPSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETL 223
KPS IQ AI K + A++G+GKT + I ++ ++
Sbjct: 54 KPSAIQQRAILPCIKGYDV------IAQAQSGTGKTATFAISILQQIEL----------- 96
Query: 224 KDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRID-IM 282
D ++++L PT EL +Q+ + V L +G + G++ + V+ L+ I+
Sbjct: 97 -DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHII 155
Query: 283 VTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVL 342
V TPG++ M+NR +K V+DEAD +L + + + Y + + + V+
Sbjct: 156 VGTPGRVFD-----MLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVV 210
Query: 343 FCSATIPKEFQKTITRLF--PTVGVIASPNLHKINHKNQIKLINADMAPYKGSKTKALAQ 400
SAT+P + + +T+ F + ++ + Q IN + +K L +
Sbjct: 211 LLSATMPSDVLE-VTKKFMRDPIRILVKKEELTLEGIRQF-YINVEREEWKLDTLCDLYE 268
Query: 401 ILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSVEERLEKIK 460
L + VIF+N + V + K+ + V A+ G+ +ER
Sbjct: 269 TLTI-----------TQAVIFINTRRKVDWLTEKM-HARDFTVSAMHGDMDQKER----- 311
Query: 461 PFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLAR 520
++++ E F + +VL+TTD+LAR
Sbjct: 312 ------------------------------DVIMRE-------FRSGSSRVLITTDLLAR 334
Query: 521 GINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKGSVFIITGKRVKNWVKAIPSIVSKN 580
GI+ + V+ YD+P + +HR+GR GR +KG + + K ++ I + + +
Sbjct: 335 GIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTS 394
Query: 581 V 581
+
Sbjct: 395 I 395
>CE07736 [A] KOG0335 ATP-dependent RNA helicase
Length = 720
Score = 90.1 bits (222), Expect = 8e-18
Identities = 93/404 (23%), Positives = 167/404 (41%), Gaps = 78/404 (19%)
Query: 169 QTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAI 228
+TT I Q + L+ + L A+TGSGKT A+L+P+ + R +E +
Sbjct: 320 RTTPIQQYTLPLVADGKDI-LACAQTGSGKTAAFLLPI---MSRLILEKDLNYGAEGGCY 375
Query: 229 VRSIILLPTHELVEQV--------YQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRID 280
R IIL PT EL +Q+ YQ+V +++P G ++ KG
Sbjct: 376 PRCIILTPTRELADQIYNEGRKFSYQSVMEIKPVYGGINVGYNKSQIMKG--------CT 427
Query: 281 IMVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNL-- 338
I+V T G++ + L + ++LV+DEAD ++D I + +N+
Sbjct: 428 IIVGTIGRVKHFCEDGAIK-----LDKCRYLVLDEADRMIDSMGFGPEIEQIINYKNMPK 482
Query: 339 ---NHVLFCSATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQIKLINADMAPYKGSKT 395
+ SAT P Q+ +L + + + KI N+ + ++
Sbjct: 483 NDKRQTMMFSATFPSSVQEAARKLLREDYTMIT--IDKIGAANKCVIQEFELCDRTSKVD 540
Query: 396 KALAQILYSINRDNIDPG---FEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSV 452
K L + I+ + F K+ ++FV +++ +A+ ++ V A+T + +
Sbjct: 541 KLLKLLGIDIDTYTTEKNSDVFVKKTIVFVAQQKMADTLASIMS---AAQVPAITIHGAR 597
Query: 453 EERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVL 512
E++ E + +K+ F VL
Sbjct: 598 EQK------------------------ERSAALKL----------------FRSGAKPVL 617
Query: 513 VTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKG 556
+ T V+ RG++ +G +V+ YD+PN D +HR+GRTGR+ G
Sbjct: 618 IATAVVERGLDIKGVDHVINYDMPNNIDDYIHRIGRTGRVGNSG 661
>YBR237w [A] KOG0334 RNA helicase
Length = 849
Score = 89.7 bits (221), Expect = 1e-17
Identities = 93/387 (24%), Positives = 166/387 (42%), Gaps = 75/387 (19%)
Query: 192 AETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSKL 251
++TGSGKT++YL+PL L++ + + P K + +IL PT EL Q+++ V+K
Sbjct: 300 SKTGSGKTISYLLPL---LRQVKAQRP---LSKHETGPMGLILAPTRELALQIHEEVTKF 353
Query: 252 -EPALGMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILS--QV 308
E + + GS K + LK +I+V TPG+ + + ++ ++LS ++
Sbjct: 354 TEADTSIRSVCCTGGSEMKKQITDLKRGTEIVVATPGRFIDILTLN----DGKLLSTKRI 409
Query: 309 KFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFCSATIPKEFQKTITRLF--PTVGVI 366
F+VMDEAD L D + +K ++ + SAT P + + R+ P I
Sbjct: 410 TFVVMDEADRLFDLGFEPQITQIMKTVRPDKQCVLFSATFPNKLRSFAVRVLHSPISITI 469
Query: 367 ASPNLHKINHKNQIKLINADMAPYKGSKTKALAQILY-------SINRDNIDPG-----F 414
S + N K + ++ +++ K L Q+++ + +N
Sbjct: 470 NSKGMVNENVKQKFRICHSE-----DEKFDNLVQLIHERSEFFDEVQSENDGQSSDVEEV 524
Query: 415 EKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKS 474
+ + +IFV+ + ++ KL N G A+ +ERL ++ F K
Sbjct: 525 DAKAIIFVSSQNICDFISKKLLNA-GIVTCAIHAGKPYQERLMNLEKF----------KR 573
Query: 475 EKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYD 534
EK NS +L+ T+VL+RG+N V++Y+
Sbjct: 574 EK------------NS--------------------ILLCTEVLSRGLNVPEVSLVIIYN 601
Query: 535 IPNTPVDLVHRVGRTGRMNQKGSVFII 561
T VH GRT R ++ G+ +
Sbjct: 602 AVKTFAQYVHTTGRTARGSRSGTAITL 628
>Hs13129006 [A] KOG0331 ATP-dependent RNA helicase
Length = 737
Score = 89.7 bits (221), Expect = 1e-17
Identities = 91/378 (24%), Positives = 156/378 (41%), Gaps = 85/378 (22%)
Query: 192 AETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSKL 251
A TG+GKT ++ IPL++ L+R + ET+K + ++L PT EL QV + +
Sbjct: 181 ARTGTGKTFSFAIPLIERLQRNQ------ETIKKSRSPKVLVLAPTRELANQVAKDFKDI 234
Query: 252 EPALGMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQVKFL 311
L + + G+SY+ + ++ IDI+V TPG+I ++ LS+++ +
Sbjct: 235 TRKLSVACFY--GGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLD-----LSKLRHV 287
Query: 312 VMDEADTLLDKSWVE-------DSYSTIKHMQNLNHVLFCSATIP----KEFQKTITRLF 360
V+DE D +LD + E +SY T ++ L SAT P K +K + +
Sbjct: 288 VLDEVDQMLDLGFAEQVEDIIHESYKT--DSEDNPQTLLFSATCPQWVYKVAKKYMKSRY 345
Query: 361 PTVGVIASPNLHKINHKNQIKLINADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVI 420
V ++ K+ K + + + + + + +L + G E R +I
Sbjct: 346 EQVDLVG-----KMTQKAATTVEHLAIQCHWSQRPAVIGDVL------QVYSGSEGRAII 394
Query: 421 FVNEKENVPLVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTR--KSEKVT 478
F K+NV +A M+P K + +
Sbjct: 395 FCETKKNVTEMA------------------------------MNPHIKQNAQCLHGDIAQ 424
Query: 479 TENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNT 538
++ +T+K F E + KVLV T+V ARG++ V+ P
Sbjct: 425 SQREITLK----------------GFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQD 468
Query: 539 PVDLVHRVGRTGRMNQKG 556
+HR GRTGR + G
Sbjct: 469 VESYIHRSGRTGRAGRTG 486
>CE17559 [A] KOG0339 ATP-dependent RNA helicase
Length = 811
Score = 89.7 bits (221), Expect = 1e-17
Identities = 104/406 (25%), Positives = 168/406 (40%), Gaps = 74/406 (18%)
Query: 164 KPSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETL 223
+P+PIQ AI L + L A+TGSGKT AYL P + ++ M+ P L
Sbjct: 287 QPTPIQAMAI---PSALSGRDV---LGIAKTGSGKTAAYLWPAIVHI----MDQPD---L 333
Query: 224 KDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTY-KWDAGSSYKGFVEALKGRIDIM 282
K ++I++PT EL QV+Q K ++ + GS ++ E +++
Sbjct: 334 KAGEGPVAVIVVPTRELAIQVFQEAKKFCKVYNINPICAYGGGSKWEQSNELQNEGAEMV 393
Query: 283 VTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVL 342
V TPG+I+ L + N + FLV DEAD + D + S H++ L
Sbjct: 394 VCTPGRIIDLVKMGATN-----FLRTTFLVFDEADRMFDMGFEAQVKSISDHVRPDRQCL 448
Query: 343 FCSATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQIKLINADMAPYKGSKTKALAQIL 402
SAT ++ ++ I + + N + K+ K L
Sbjct: 449 MFSATFKQKVERLARDALVDPVRIVQGEVGEANADIEQKVFVMQNQDVK----------L 498
Query: 403 YSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSVEERLEKIKPF 462
+ + R+ ++ +V+IFV +K + VA KL D+V L G+ ER E + F
Sbjct: 499 HWLIRNLVEFASLGKVLIFVTKKLDSEDVAKKL-KMKDFDIVLLHGDMLQAERNENLLKF 557
Query: 463 MDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGI 522
+KS+ +LV TDV ARG+
Sbjct: 558 --------RKKSQ-----------------------------------ILVATDVAARGL 574
Query: 523 NFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKGSVF-IITGKRVK 567
+ R V+ +D+ VHR+GRTGR KG+ + ++T K ++
Sbjct: 575 DISEIRTVINFDMARDIDTHVHRIGRTGRAGHKGTAYTLVTEKDIE 620
>At5g51280 [A] KOG0341 DEAD-box protein abstrakt
Length = 591
Score = 89.7 bits (221), Expect = 1e-17
Identities = 99/426 (23%), Positives = 172/426 (40%), Gaps = 87/426 (20%)
Query: 142 KNLLDVKYNPKENNVQEFKKHLKPSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMA 201
KN D+K+ + + K ++P+PIQ + ++ + + + A TGSGKT+
Sbjct: 146 KNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGL----PVILAGRDMIGI--AFTGSGKTLV 199
Query: 202 YLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSKLEPAL------ 255
+++P++ + EM P + I +I+ P+ EL Q Y+ V + L
Sbjct: 200 FVLPMIMIALQEEMMMPI--AAGEGPI--GLIVCPSRELARQTYEVVEQFVAPLVEAGYP 255
Query: 256 GMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQVKFLVMDE 315
+ + G + +E +K + I+V TPG++ M+ + L ++L +DE
Sbjct: 256 PLRSLLCIGGIDMRSQLEVVKRGVHIVVATPGRLKD-----MLAKKKMSLDACRYLTLDE 310
Query: 316 ADTLLDKSWVEDSYSTIKHMQNLNHVLFCSATIPKEFQ-----KTITRLFPTVGVIASPN 370
AD L+D + +D H ++ L SAT+P + Q + + VG + N
Sbjct: 311 ADRLVDLGFEDDIREVFDHFKSQRQTLLFSATMPTKIQIFARSALVKPVTVNVGRAGAAN 370
Query: 371 LHKINHKNQIKLINADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIFVNEKENVPL 430
L I +K + +K L + L + V+IF K +V
Sbjct: 371 LDVIQEVEYVK---------QEAKIVYLLECLQKTS---------PPVLIFCENKADVDD 412
Query: 431 VATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNS 490
+ L + G + VA+ G E+R I F K
Sbjct: 413 IHEYLLLK-GVEAVAIHGGKDQEDREYAISSFKAGKK----------------------- 448
Query: 491 NIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTG 550
VLV TDV ++G++F ++V+ YD+P + VHR+GRTG
Sbjct: 449 -------------------DVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTG 489
Query: 551 RMNQKG 556
R + G
Sbjct: 490 RCGKTG 495
>At3g13920 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 412
Score = 89.7 bits (221), Expect = 1e-17
Identities = 98/395 (24%), Positives = 171/395 (42%), Gaps = 81/395 (20%)
Query: 164 KPSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETL 223
KPS IQ I K L Q A++G+GKT + ++ L + ++
Sbjct: 61 KPSAIQQRGIVPFCKGLDVIQ------QAQSGTGKTATFCSGVLQQLDFSLIQ------- 107
Query: 224 KDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRIDIMV 283
++++L PT EL +Q+ + + L LG+ + G+S + L+ + ++V
Sbjct: 108 -----CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVV 162
Query: 284 TTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLF 343
TPG++ M+ R +K V+DEAD +L + + + Y + + V
Sbjct: 163 GTPGRV-----FDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGV 217
Query: 344 CSATIPKEFQKTITRLFPT--VGVIASPNLHKINHKNQIKLINADMAPYKGSKTKALAQI 401
SAT+P E + ITR F + V ++ + + Q +N + +K L +
Sbjct: 218 FSATMPPEALE-ITRKFMSKPVRILVKRDELTLEGIKQF-YVNVEKEEWKLETLCDLYET 275
Query: 402 LYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSVEERLEKIKP 461
L +I + VIFVN + V + K+ ++ H V A G+
Sbjct: 276 L-AITQS----------VIFVNTRRKVDWLTDKMRSR-DHTVSATHGD------------ 311
Query: 462 FMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARG 521
MD +NT +I++ E F + +VL+TTD+LARG
Sbjct: 312 -MD---------------QNT-------RDIIMRE-------FRSGSSRVLITTDLLARG 341
Query: 522 INFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKG 556
I+ + V+ +D+P P + +HR+GR+GR +KG
Sbjct: 342 IDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKG 376
>SPBC543.06c [A] KOG0340 ATP-dependent RNA helicase
Length = 453
Score = 89.4 bits (220), Expect = 1e-17
Identities = 99/399 (24%), Positives = 162/399 (39%), Gaps = 75/399 (18%)
Query: 192 AETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSKL 251
A+TGSGKT A+ +P+++ W KD + + ++IL PT EL Q+ + + L
Sbjct: 51 AKTGSGKTAAFALPIIE----------KWS--KDPSGIFALILTPTRELAIQIDEQFAAL 98
Query: 252 EPALGMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRI--LSQVK 309
L + G L R ++V TPG++ L N + I L ++K
Sbjct: 99 GANLNLKHALIVGGMDMIRQSIDLSKRPHVVVATPGRLADLIRS---NGEETIAGLRRIK 155
Query: 310 FLVMDEADTLLDKSW---VEDSYSTIKHMQNLNHVLFCSATIPKEFQKTITRLFPTVGVI 366
FLVMDEAD LL ++ ++D +S + ++ +LF +AT+ +
Sbjct: 156 FLVMDEADRLLSPTFADDLDDCFSVLPASEDRQTLLF-TATVTDAIR------------- 201
Query: 367 ASPNLHKINHKNQIKLINADMAPYKGSKTKALAQILYSINRDNID-PGFEKRVVIFVNE- 424
Q+K Y+ K LY + DNI P ++ IFV+
Sbjct: 202 ------------QLK--------YQPQKNNKPPLWLYEVETDNISVPSTLQQSYIFVSSQ 241
Query: 425 -KENVPLVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTV 483
+E + + + E + I ++ ++T SE V E
Sbjct: 242 VREAYLVHLLTIPENAKKSAIIFVNRTRTAELIYSILRLLE--LRVTELHSEMVQRERIN 299
Query: 484 TMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLV 543
++ F K+LV TDV +RG++ + V+ +D+P P D +
Sbjct: 300 SL----------------GRFRAEAAKILVATDVASRGLDIPSVQLVINFDLPRDPDDYI 343
Query: 544 HRVGRTGRMNQKGSVFIITGKRVKNWVKAIPSIVSKNVS 582
HRVGRT R + G I +R + V AI V +S
Sbjct: 344 HRVGRTARAGRSGESISIVTERDVDLVHAIEDRVGTKLS 382
>SPAC30D11.03 [A] KOG0338 ATP-dependent RNA helicase
Length = 754
Score = 89.4 bits (220), Expect = 1e-17
Identities = 86/386 (22%), Positives = 153/386 (39%), Gaps = 71/386 (18%)
Query: 191 AAETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSK 250
AA TGSGKT A+++P+++ L + P+ R +IL PT EL Q + +K
Sbjct: 302 AAVTGSGKTAAFIVPILERLLYRPKKVPT---------TRVLILCPTRELAMQCHSVATK 352
Query: 251 LEPALGMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQVKF 310
+ + G S K + L+ R DI++ TPG+ + M N + ++
Sbjct: 353 IASFTDIMVCLCIGGLSLKLQEQELRKRPDIVIATPGRFID----HMRNSQGFTVENIEI 408
Query: 311 LVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFCSATIPKEFQKTITRLFPTVGVIASPN 370
+VMDEAD +L+ + ++ I+ + SAT+ + I + +
Sbjct: 409 MVMDEADRMLEDGFADELNEIIQACPKSRQTMLFSATMTDKVDDLI-----RLSLNRPVR 463
Query: 371 LHKINHKNQIKLINADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIFVNEKENVPL 430
+ N K KL+ + + + +L + ++ F +R +IF K
Sbjct: 464 VFVDNKKTTAKLLTQEFVRVRPQRELLRPAMLIYLCKEL----FHRRTIIFFRSK----A 515
Query: 431 VATKLANQYG---HDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKI 487
A K+ +G + + G+ S E+R+ ++ F D
Sbjct: 516 FAHKMRVIFGLLSLNATEIHGSLSQEQRVRALEDFRD----------------------- 552
Query: 488 PNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVG 547
L+ TDV +RGI+ +G V+ Y+ P T +HRVG
Sbjct: 553 -------------------GKCNYLLATDVASRGIDIKGIEVVINYEAPATHEVYLHRVG 593
Query: 548 RTGRMNQKGSVFIITGKRVKNWVKAI 573
RT R + G + G+ + +K +
Sbjct: 594 RTARAGRSGRAITLAGEGDRKVLKGV 619
>Hs22057246 [A] KOG0336 ATP-dependent RNA helicase
Length = 631
Score = 89.4 bits (220), Expect = 1e-17
Identities = 106/432 (24%), Positives = 179/432 (40%), Gaps = 92/432 (21%)
Query: 163 LKPSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYL-----KRTEMEN 217
+KP+PIQ+ A L L ++ A+TG+GKT++YL+P +L R +
Sbjct: 243 VKPTPIQSQA---WPIILQGIDL---IVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNG 296
Query: 218 PSWETLKDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKG 277
P ++L PT EL V SK G+ + G + G +E +
Sbjct: 297 PG-----------MLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISK 344
Query: 278 RIDIMVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQN 337
+DI++ TPG++ L + VN L + +LV+DEAD +LD + + ++
Sbjct: 345 GVDIIIATPGRLNDLQMNNSVN-----LRSITYLVIDEADKMLDMEFEPQIRKILLDVRP 399
Query: 338 LNHVLFCSATIPKEFQKTITRLF--PTVGVIASPNLHKINHKNQIKLINADMAPYKGSKT 395
+ SAT P ++ P + + + NL +N Q ++ + +
Sbjct: 400 DRQTVMTSATWPDTVRQLALSYLKDPMIVYVGNLNLVAVNTVKQNIIVTTE------KEK 453
Query: 396 KALAQILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQY---GHDVVALTGNDSV 452
+AL Q +N+ P +V++FV++K +A L++ + G +L GN
Sbjct: 454 RALTQEFV----ENMSP--NDKVIMFVSQKH----IADDLSSDFNIQGISAESLHGN--- 500
Query: 453 EERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVL 512
SE+ E V E F +K+L
Sbjct: 501 ---------------------SEQSDQERAV------------------EDFKSGNIKIL 521
Query: 513 VTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKG-SVFIITGKRVKNWVK 571
+TTD+++RG++ +V YD P VHRVG GR + G SV +IT + K +
Sbjct: 522 ITTDIVSRGLDLNDVTHVYNYDFPRNIDVYVHRVGYIGRTGKTGTSVTLITQRDSKMAGE 581
Query: 572 AIPSIVSKNVSI 583
I + N S+
Sbjct: 582 LIKILDRANQSV 593
>7299006 [A] KOG0345 ATP-dependent RNA helicase
Length = 613
Score = 89.4 bits (220), Expect = 1e-17
Identities = 111/407 (27%), Positives = 176/407 (42%), Gaps = 80/407 (19%)
Query: 166 SPIQTTAIYQTSKTLMDPQLQVRL-IAAE--TGSGKTMAYLIPLVDYLKRTEMENPSWET 222
+P+QT AI P L R ++AE TGSGKT+A+L+P+++ L+R E P W
Sbjct: 31 TPVQTAAI---------PLLLARKDVSAEAVTGSGKTLAFLVPMLEILQRRHKETP-WGP 80
Query: 223 LKDKAIVRSIILLPTHELVEQVYQTVSKL---EPALGMHTYKWDAGSSYKGFVEALKGRI 279
+ + ++++ PT EL Q+ + +++ E ++ G+S + + L+
Sbjct: 81 KE----IGALVISPTRELARQISEVLAQFLEHEDLEHLNQQLIVGGNSIEEDIATLRRET 136
Query: 280 D-IMVTTPGKILSLFNISMVNRPD--RILSQVK---FLVMDEADTLLDKSWVEDSYSTIK 333
I+V TPG++ LF + D + +QVK FLV+DEAD LLD + + +
Sbjct: 137 PCILVCTPGRLEDLFQ----RKGDDLNLAAQVKSLEFLVLDEADRLLDLGFKTSVNNILG 192
Query: 334 HMQNLNHVLFCSATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQIKLINADMAPYKGS 393
++ SAT E I + +P L + K +
Sbjct: 193 YLPRQRRTGLFSATQTTEVTDLIR------AGLRNPVLVSVKEKASV------------- 233
Query: 394 KTKALAQILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSVE 453
T A Q Y I ++P + FV E + AT + G +V VE
Sbjct: 234 NTPARLQNFYRI----VEPELK-----FVALLEFLSSPATVI----GKVMVFFPTCACVE 280
Query: 454 ERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLV 513
E + P + PK+ K MK +N+V E F + VL+
Sbjct: 281 YWAEALPPLL--PKRTVLGIHGK--------MKNKRANVV--------EKFRNTPQAVLL 322
Query: 514 TTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKGSVFI 560
TDVLARG++ +VV +D P+T VHRVGRT R +G+ +
Sbjct: 323 CTDVLARGLDVPEIEWVVQWDPPSTASSFVHRVGRTARQGNEGNALV 369
>CE28369 [A] KOG0335 ATP-dependent RNA helicase
Length = 644
Score = 89.0 bits (219), Expect = 2e-17
Identities = 95/408 (23%), Positives = 167/408 (40%), Gaps = 87/408 (21%)
Query: 164 KPSPIQTTAI--YQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKR---TEMENP 218
KP+P+Q +I ++ LM A+TGSGKT A+L+P++ ++ ++ P
Sbjct: 145 KPTPVQKHSIPTLLANRDLMS--------CAQTGSGKTAAFLLPIIQHILAGGPDMVKPP 196
Query: 219 SWETLKDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHT-YKWDAGSSYKGFVEALKG 277
++ + +++L PT EL Q+++ +K + T + +Y+ V L+
Sbjct: 197 AFTNGRRTYYPCALVLSPTRELAIQIHKEATKFSYKSNIQTAILYGGRENYRDQVNRLRA 256
Query: 278 RIDIMVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKH--- 334
I++ TPG+++ + + L+ ++LV+DEAD +LD + +
Sbjct: 257 GTHILIATPGRLIDIIEQGFIG-----LAGCRYLVLDEADRMLDMGFEPQIRKIVGQGMP 311
Query: 335 MQNLNHVLFCSATIPKEFQKTI------TRLFPTVGVIASPNLHKINHKNQIKLINADMA 388
+ SAT PKE Q +F VG + S + N + ++ +N
Sbjct: 312 PKTARTTAMFSATFPKEIQVLAKDFLKDNYIFLAVGRVGSTS---ENIEQRLLWVN---- 364
Query: 389 PYKGSKTKALAQILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTG 448
+ K L +IL + + +N+ V++FV K +A L Q V
Sbjct: 365 --EMEKRSNLMEILMNEHSENL-------VLVFVETKRGANELAYFLNRQQIRSV----- 410
Query: 449 NDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVEST 508
S+ L++I E + E F
Sbjct: 411 --SIHGDLKQI------------------------------------ERERNLELFRSGQ 432
Query: 509 LKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKG 556
+LV T V ARG++ R+V+ YD+P + VHR+GRTGR G
Sbjct: 433 CPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRIGRTGRCGNLG 480
>CE24451 [A] KOG0335 ATP-dependent RNA helicase
Length = 641
Score = 89.0 bits (219), Expect = 2e-17
Identities = 95/408 (23%), Positives = 167/408 (40%), Gaps = 87/408 (21%)
Query: 164 KPSPIQTTAI--YQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKR---TEMENP 218
KP+P+Q +I ++ LM A+TGSGKT A+L+P++ ++ ++ P
Sbjct: 142 KPTPVQKHSIPTLLANRDLMS--------CAQTGSGKTAAFLLPIIQHILAGGPDMVKPP 193
Query: 219 SWETLKDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHT-YKWDAGSSYKGFVEALKG 277
++ + +++L PT EL Q+++ +K + T + +Y+ V L+
Sbjct: 194 AFTNGRRTYYPCALVLSPTRELAIQIHKEATKFSYKSNIQTAILYGGRENYRDQVNRLRA 253
Query: 278 RIDIMVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKH--- 334
I++ TPG+++ + + L+ ++LV+DEAD +LD + +
Sbjct: 254 GTHILIATPGRLIDIIEQGFIG-----LAGCRYLVLDEADRMLDMGFEPQIRKIVGQGMP 308
Query: 335 MQNLNHVLFCSATIPKEFQKTI------TRLFPTVGVIASPNLHKINHKNQIKLINADMA 388
+ SAT PKE Q +F VG + S + N + ++ +N
Sbjct: 309 PKTARTTAMFSATFPKEIQVLAKDFLKDNYIFLAVGRVGSTS---ENIEQRLLWVN---- 361
Query: 389 PYKGSKTKALAQILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTG 448
+ K L +IL + + +N+ V++FV K +A L Q V
Sbjct: 362 --EMEKRSNLMEILMNEHSENL-------VLVFVETKRGANELAYFLNRQQIRSV----- 407
Query: 449 NDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVEST 508
S+ L++I E + E F
Sbjct: 408 --SIHGDLKQI------------------------------------ERERNLELFRSGQ 429
Query: 509 LKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKG 556
+LV T V ARG++ R+V+ YD+P + VHR+GRTGR G
Sbjct: 430 CPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRIGRTGRCGNLG 477
>At4g34910 [A] KOG0346 RNA helicase
Length = 626
Score = 89.0 bits (219), Expect = 2e-17
Identities = 93/368 (25%), Positives = 154/368 (41%), Gaps = 24/368 (6%)
Query: 192 AETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSKL 251
A+TGSGKT+AYL+PL+ L + K K + IL+P+ EL +QVY VS L
Sbjct: 90 AKTGSGKTLAYLLPLLQKLFSAD------SVSKKKLAPSAFILVPSRELCQQVYTEVSSL 143
Query: 252 EP--ALGMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQVK 309
+ + + + S AL G +I+V+TP I F ++ P + +
Sbjct: 144 IELCRVQLKAVQLTSSMSASDMRNALAGLPEILVSTPACIPKCFAAGVL-EPTAVSESLS 202
Query: 310 FLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFCSATIPKEFQKTITRLFPTVGVIASP 369
LV+DEAD LL + ++ S + L SAT + +K + V+
Sbjct: 203 ILVLDEADLLLSYGYEDNLRSVTSIIPRRCQCLLMSATTSSDVEKLKKLILHNPIVL--- 259
Query: 370 NLHKINHKNQIKLINADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIFVNEKENVP 429
L + N K + N S L IL + + + +K+++IF+N + +
Sbjct: 260 TLTEDNDKEEAVPSNVQQFWISCSAQDKLLHILALLKLEVV----QKKILIFINTID-MG 314
Query: 430 LVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPN 489
++G L G RL ++ F T +N+ T K
Sbjct: 315 FRLKLFLEKFGIKSAILNGELPQNSRLHILEQF-----NAGLFDYLIATDDNSQTKK--Q 367
Query: 490 SNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRT 549
E ++N+ + + L + RGI+F+ V+ +D+P + +HR+GRT
Sbjct: 368 KEEAKGEANKENKKNNKRSKPKLDAEFGVVRGIDFKKVHTVINFDMPQSVTGYIHRIGRT 427
Query: 550 GRMNQKGS 557
GR GS
Sbjct: 428 GRAYSSGS 435
>YDL031w [A] KOG0337 ATP-dependent RNA helicase
Length = 995
Score = 88.6 bits (218), Expect = 2e-17
Identities = 106/457 (23%), Positives = 189/457 (41%), Gaps = 74/457 (16%)
Query: 154 NNVQEFKKHLKPSPIQTTAIYQTSKTLMDPQLQVRLIA--AETGSGKTMAYLIPLVDYLK 211
NN++ K +P+PIQ I LQ R I A TGSGKT A+++P+V+ LK
Sbjct: 150 NNIKR-KGFRQPTPIQRKTIPLI--------LQSRDIVGMARTGSGKTAAFILPMVEKLK 200
Query: 212 RTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGF 271
+ K R++IL P+ EL Q + + + G S +
Sbjct: 201 ----------SHSGKIGARAVILSPSRELAMQTFNVFKDFARGTELRSVLLTGGDSLEEQ 250
Query: 272 VEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYST 331
+ D+++ TPG+ L L + M + L V+++V DEAD L + + E
Sbjct: 251 FGMMMTNPDVIIATPGRFLHL-KVEM----NLDLKSVEYVVFDEADRLFEMGFQEQLNEL 305
Query: 332 IKHMQNLNHVLFCSATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQIKLINADMAPYK 391
+ + L SAT+P F G++ +P L +++ + ++ N +M
Sbjct: 306 LASLPTTRQTLLFSATLPNSLVD-----FVKAGLV-NPVLVRLDAETKVS-ENLEML--- 355
Query: 392 GSKTKALAQILYSINRDNIDPGFEKRVVIFVNEKENVPLVAT-KLANQYGHDVVALTGND 450
L S N D E ++ + E +PL + +L + A + +D
Sbjct: 356 ---------FLSSKNADR-----EANLLYILQEIIKIPLATSEQLQKLQNSNNEADSDSD 401
Query: 451 SVEERLEKIKPF-MDPPKKMTTRKSEKVTTENTVTMKIPNSNIV--IEEIPEDNE---AF 504
+R +K + F + +K + ++ +E + +P + V I ++ D ++
Sbjct: 402 DENDRQKKRRNFKKEKFRKQKMPAANELPSEKATILFVPTRHHVEYISQLLRDCGYLISY 461
Query: 505 VESTL-----------------KVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVG 547
+ TL +LV TDV ARG++ V+ Y +P + VHRVG
Sbjct: 462 IYGTLDQHARKRQLYNFRAGLTSILVVTDVAARGVDIPMLANVINYTLPGSSKIFVHRVG 521
Query: 548 RTGRMNQKGSVFIITGKRVKNWVKAIPSIVSKNVSIS 584
RT R KG + I + ++ + + K + ++
Sbjct: 522 RTARAGNKGWAYSIVAENELPYLLDLELFLGKKILLT 558
>Hs4503531 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 407
Score = 88.6 bits (218), Expect = 2e-17
Identities = 95/421 (22%), Positives = 173/421 (40%), Gaps = 82/421 (19%)
Query: 164 KPSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETL 223
KPS IQ AI K + A++G+GKT + I ++ L+ E
Sbjct: 55 KPSAIQQRAIIPCIKGYDV------IAQAQSGTGKTATFAISILQQLEIEFKET------ 102
Query: 224 KDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRID-IM 282
++++L PT EL +Q+ + + L +G + G++ + ++ L+ I+
Sbjct: 103 ------QALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIV 156
Query: 283 VTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVL 342
V TPG++ M+NR +K V+DEAD +L + + + Y + + V+
Sbjct: 157 VGTPGRVFD-----MLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVV 211
Query: 343 FCSATIPKEFQKTITRLF--PTVGVIASPNLHKINHKNQIKLINADMAPYKGSKTKALAQ 400
F SAT+P + + +T+ F + ++ + Q IN + +K L +
Sbjct: 212 FASATMPTDVLE-VTKKFMRDPIRILVKKEELTLEGIKQF-YINVEREEWKLDTLCDLYE 269
Query: 401 ILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSVEERLEKIK 460
L + VIF+N + V + K+ + V AL G+ +ER
Sbjct: 270 TLTI-----------TQAVIFLNTRRKVDWLTEKM-HARDFTVSALHGDMDQKER----- 312
Query: 461 PFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLAR 520
++++ E F + +VL+TTD+LAR
Sbjct: 313 ------------------------------DVIMRE-------FRSGSSRVLITTDLLAR 335
Query: 521 GINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKGSVFIITGKRVKNWVKAIPSIVSKN 580
GI+ + V+ YD+P + +HR+GR GR +KG + K ++ I + +
Sbjct: 336 GIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFYNTT 395
Query: 581 V 581
V
Sbjct: 396 V 396
>At3g58510 [A] KOG0335 ATP-dependent RNA helicase
Length = 603
Score = 88.6 bits (218), Expect = 2e-17
Identities = 101/404 (25%), Positives = 167/404 (41%), Gaps = 84/404 (20%)
Query: 161 KHLKPSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVD-YLKRTEMENPS 219
K+++P+P+Q AI L + L + A+TGSGKT A+ P++ +K +E P
Sbjct: 170 KYVRPTPVQRHAI---PILLAERDL---MACAQTGSGKTAAFCFPIISGIMKDQHVERPR 223
Query: 220 WETLKDKAIVR-SIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGR 278
+A+ ++IL PT EL Q++ K G+ G+ + L+
Sbjct: 224 GS----RAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERG 279
Query: 279 IDIMVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNL 338
DI+V TPG++ L + V+ + ++FL +DEAD +LD + ++ M
Sbjct: 280 CDILVATPGRLNDLLERARVS-----MQMIRFLALDEADRMLDMGFEPQIRKIVEQMD-- 332
Query: 339 NHVLFCSATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQIKLINAD-MAPYKGSKTKA 397
P+ ++T+ L +QI+ + AD M+ Y
Sbjct: 333 --------MPPRGVRQTM--------------LFSATFPSQIQRLAADFMSNY------- 363
Query: 398 LAQILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSVEERLE 457
I ++ R + V FV E + + L Q E +
Sbjct: 364 ---IFLAVGRVGSSTDLITQRVEFVQESDKRSHLMDLLHAQ--------------RETQD 406
Query: 458 KIKPFMDPPKKMTTRKSEKVTTENTVTM-KIPNSNIVIEEIPEDNE----AFVESTLKVL 512
K K D T EN + M + P ++I + ++ E +F +L
Sbjct: 407 KTKRGAD-------------TLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGRTPIL 453
Query: 513 VTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKG 556
V TDV ARG++ +VV +D+PN D VHR+GRTGR + G
Sbjct: 454 VATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSG 497
>7294797 [A] KOG0339 ATP-dependent RNA helicase
Length = 791
Score = 88.6 bits (218), Expect = 2e-17
Identities = 99/414 (23%), Positives = 169/414 (39%), Gaps = 81/414 (19%)
Query: 161 KHLKPSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRTEMENPSW 220
++ +P+PIQ A+ T + + + + A+TGSGKT A++ P++ ++ + P
Sbjct: 288 EYTQPTPIQAQAV----PTALSGRDIIGI--AKTGSGKTAAFIWPMLMHVMDQKQLKPG- 340
Query: 221 ETLKDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRID 280
D I +IL PT EL Q+Y K ++ G S +AL+ +
Sbjct: 341 ----DGPI--GLILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQSKALEQGAE 394
Query: 281 IMVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNH 340
I+V TPG+++ + + N L +V FLV+DEAD + + S H++
Sbjct: 395 IIVATPGRMIDMVKMKATN-----LRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQ 449
Query: 341 VLFCSATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQIKLINADMAPYKGSKTKALAQ 400
L SAT F+K I RL V++ P ++++ D
Sbjct: 450 CLMFSAT----FKKRIERL--ARDVLSDP----------VRIVQGD-------------- 479
Query: 401 ILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSVEERLEKIK 460
+N N D + V +F N + + L V +
Sbjct: 480 ----LNEANQD--ITQSVYVFPNPLQKWNWLLCHLVKFLSEGSVLI-------------- 519
Query: 461 PFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLK-----VLVTT 515
T+K + T N + +K N ++ ++ + + V + K +LV T
Sbjct: 520 --------FVTKKVDAETVSNNLLIKEYNCLLLHGDMDQADRNKVITQFKRKECDILVAT 571
Query: 516 DVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKGSVFIITGKRVKNW 569
DV ARG++ R VV YD HR+GRTGR +KG+ + + + K +
Sbjct: 572 DVAARGLDIPHIRNVVNYDTARDIETHTHRIGRTGRAGEKGNAYTLVTDKDKEF 625
>At3g22310 [A] KOG0331 ATP-dependent RNA helicase
Length = 610
Score = 88.2 bits (217), Expect = 3e-17
Identities = 108/437 (24%), Positives = 179/437 (40%), Gaps = 108/437 (24%)
Query: 158 EFKKHLKPSPIQTTAIYQTSKTLMDPQLQVR--LIAAETGSGKTMAYLIPLVDYL----- 210
E K LK I+ ++ K +++P ++ R + A TG+GKT+A+ IP++D +
Sbjct: 126 EIVKALKGRGIEK--LFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNA 183
Query: 211 KRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKG 270
K +NP + ++L PT EL QV + + P+L T G+
Sbjct: 184 KHGRGKNP-----------QCLVLAPTRELARQVEKEFRESAPSLD--TICLYGGTPIGQ 230
Query: 271 FVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYS 330
+ L ID+ V TPG+I+ L +N LS+V+F+V+DEAD +L + ED
Sbjct: 231 QMRELNYGIDVAVGTPGRIIDLMKRGALN-----LSEVQFVVLDEADQMLQVGFAEDVEI 285
Query: 331 TIKHMQNLNHVLFCSATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQIKLINADMAPY 390
++ + + SAT+P + +++T+ + +N+ I L+
Sbjct: 286 ILQKLPAKRQSMMFSATMP-SWIRSLTKKY-------------LNNPLTIDLV------- 324
Query: 391 KGSKTKALAQ--ILYSINRDNI-----------DPGFEKRVVIFVNEKENVPLVATKLAN 437
G + LA +YSI D+ + G + ++F K + +A LA
Sbjct: 325 -GDSDQKLADGITMYSIAADSYGRASIIGPLVKEHGKGGKCIVFTQTKRDADRLAFGLAK 383
Query: 438 QYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIE-E 496
Y + AL G+ S +R + F D + T + +PN ++VI E
Sbjct: 384 SYKCE--ALHGDISQAQRERTLAGFRDGNFSILV-----ATDVAARGLDVPNVDLVIHYE 436
Query: 497 IPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKG 556
+P + E F VHR GRTGR +KG
Sbjct: 437 LPNNTETF--------------------------------------VHRTGRTGRAGKKG 458
Query: 557 SVFIITGKRVKNWVKAI 573
S +I G+ VK I
Sbjct: 459 SAILIHGQDQTRAVKMI 475
>CE22474 [A] KOG0336 ATP-dependent RNA helicase
Length = 504
Score = 87.8 bits (216), Expect = 4e-17
Identities = 101/404 (25%), Positives = 170/404 (42%), Gaps = 84/404 (20%)
Query: 164 KPSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIP--------LVDYLKRTEM 215
KPSPIQ+ Q L+ Q + + ++TGSGKT+A+L+P L Y K E
Sbjct: 106 KPSPIQS----QMWPLLLSGQDCIGV--SQTGSGKTLAFLLPALLHIDAQLAQYEKNDEE 159
Query: 216 ENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEAL 275
+ PS L +L PT EL +Q+ V K G + G S VEA
Sbjct: 160 QKPSPFVL---------VLSPTRELAQQIEGEVKKYSYN-GYKSVCLYGGGSRPEQVEAC 209
Query: 276 KGRIDIMVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHM 335
+G ++I++ TPG++ L N +++ L+ V ++V+DEAD +LD + + +
Sbjct: 210 RGGVEIVIATPGRLTDLSNDGVIS-----LASVTYVVLDEADRMLDMGFEVAIRRILFEI 264
Query: 336 QNLNHVLFCSATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQIKLINADMAPYKGSKT 395
+ V SAT P+ +K + + + +L + K+ + + P+
Sbjct: 265 RPDRLVALTSATWPEGVRKLTDKYTKEAVMAVNGSLDLTSCKSVTQFF--EFVPH----D 318
Query: 396 KALAQILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQY---GHDVVALTGNDSV 452
++ +N G +++IFV K ++A L++ + G + L G S
Sbjct: 319 SRFLRVCEIVNFLTAAHGQNYKMIIFVKSK----VMADHLSSDFCMKGINSQGLHGGRSQ 374
Query: 453 EERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVL 512
+R E ++ M +++L
Sbjct: 375 SDR------------------------EMSLNM------------------LRSGEVQIL 392
Query: 513 VTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKG 556
V TD+ +RGI+ +V+ YD P + VHRVGRTGR +KG
Sbjct: 393 VATDLASRGIDVPDITHVLNYDFPMDIEEYVHRVGRTGRAGRKG 436
>At1g54270 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 412
Score = 87.8 bits (216), Expect = 4e-17
Identities = 99/395 (25%), Positives = 171/395 (43%), Gaps = 81/395 (20%)
Query: 164 KPSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETL 223
KPS IQ I K L Q A++G+GKT + ++ L ++
Sbjct: 61 KPSAIQQRGIVPFCKGLDVIQ------QAQSGTGKTATFCSGVLQQLDYALLQ------- 107
Query: 224 KDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRIDIMV 283
++++L PT EL +Q+ + + L G+ + G+S + L+ + ++V
Sbjct: 108 -----CQALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILQAGVHVVV 162
Query: 284 TTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLF 343
TPG++ + + RPD I K V+DEAD +L + + + Y + + V
Sbjct: 163 GTPGRVFDMLRRQSL-RPDCI----KMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGV 217
Query: 344 CSATIPKEFQKTITRLFPT--VGVIASPNLHKINHKNQIKLINADMAPYKGSKTKALAQI 401
SAT+P E + ITR F + V ++ + + Q +N + +K L +
Sbjct: 218 FSATMPPEALE-ITRKFMSKPVRILVKRDELTLEGIKQF-YVNVEKEDWKLETLCDLYET 275
Query: 402 LYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSVEERLEKIKP 461
L +I + VIFVN + V + K+ ++ H V A G+
Sbjct: 276 L-AITQS----------VIFVNTRRKVDWLTDKMRSR-DHTVSATHGD------------ 311
Query: 462 FMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARG 521
MD +NT +I++ E F + +VL+TTD+LARG
Sbjct: 312 -MD---------------QNT-------RDIIMRE-------FRSGSSRVLITTDLLARG 341
Query: 522 INFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKG 556
I+ + V+ +D+P P + +HR+GR+GR +KG
Sbjct: 342 IDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKG 376
>Hs17505907 [A] KOG0348 ATP-dependent RNA helicase
Length = 851
Score = 87.4 bits (215), Expect = 5e-17
Identities = 94/396 (23%), Positives = 171/396 (42%), Gaps = 31/396 (7%)
Query: 189 LIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTV 248
L+ ++TGSGKT+AY IP+V L+ E + ++ +++L+PT EL Q + TV
Sbjct: 272 LVRSQTGSGKTLAYCIPVVQSLQAMESK------IQRSDGPYALVLVPTRELALQSFDTV 325
Query: 249 SK-LEPALGMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQ 307
K L+P + G K L+ I+I+++TPG+++ + + + S+
Sbjct: 326 QKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVD----HIKSTKNIHFSR 381
Query: 308 VKFLVMDEADTLLDKSWVEDSYSTIK----HMQNLNHVLFCSATIPKEFQKTITRLFPTV 363
+++LV DEAD +LD + +D + Q +VL + + L V
Sbjct: 382 LRWLVFDEADRILDLGFEKDITVILNAVNAECQKRQNVLLSATLTEGVTRLADISLHDPV 441
Query: 364 GVIASPNLH-KINHKNQIKLINADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIFV 422
+ H ++N K+ K + P G K + A I ++ V +
Sbjct: 442 SISVLDKSHDQLNPKD--KAVQEVCPPPAGDKLDSFA----------IPESLKQHVTVVP 489
Query: 423 NEKENVPLVATKLAN-QYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTEN 481
++ V L A L ++ D + S E F+ + +
Sbjct: 490 SKLRLVCLAAFILQKCKFEEDQKMVVFFSSCELVEFHYSLFLQTLLSSSGAPASGQLPSA 549
Query: 482 TVTMKI--PNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTP 539
++ +K + + EE + F S VL+ TDV ARG++ ++V Y+ P++P
Sbjct: 550 SMRLKFLRLHGGMEQEERTAVFQEFSHSRRGVLLCTDVAARGLDLPQVTWIVQYNAPSSP 609
Query: 540 VDLVHRVGRTGRMNQKGSVFIITGKRVKNWVKAIPS 575
+ +HR+GRT R+ GS +I +V ++ S
Sbjct: 610 AEYIHRIGRTARIGCHGSSLLILAPSEAEYVNSLAS 645
>ECU08g1080 [A] KOG0331 ATP-dependent RNA helicase
Length = 495
Score = 86.7 bits (213), Expect = 9e-17
Identities = 89/372 (23%), Positives = 156/372 (41%), Gaps = 76/372 (20%)
Query: 192 AETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSKL 251
A+TGSGKT+++++P + + K + D IV ++L PT ELV Q+ + V +
Sbjct: 131 AQTGSGKTLSFILPALVHAKDQQPLRRG-----DGPIV--LVLAPTRELVMQIKKVVDEF 183
Query: 252 EPALGMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQVKFL 311
+ + G+S + + AL ++++ TPG+++ L ++ LS+V FL
Sbjct: 184 CGMFNLRSTAVYGGASSQPQIRALHEGAEVVIATPGRLIDLH-----DQGHAPLSRVTFL 238
Query: 312 VMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFCSATIPKEFQKTITRLFPTVGVIASPNL 371
V+DEAD +LD + I L SAT P+E + G+ S
Sbjct: 239 VLDEADRMLDMGFEPQLRKIIPKTNANRQTLMWSATWPREVR----------GLAES--- 285
Query: 372 HKINHKNQIKLINADMAPYKGSKTKALAQILYSINRDN-----IDPGFEKRVVIFVNEKE 426
+N Q+ + N ++ SK K + ++ +++ +D +V++F N K
Sbjct: 286 -YMNEYIQVVVGNEELK--TNSKIKQIVEVCSGREKEDKLIGVLDNFKGDKVIVFCNMKR 342
Query: 427 NVPLVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMK 486
+ L N+ G+ AL G+ S R +KV +
Sbjct: 343 TCDDLEYVL-NRSGYGAAALHGDKSQNIR-------------------DKVLDD------ 376
Query: 487 IPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRV 546
F +L+ T+V RG++ + V+ +D P + D VHR+
Sbjct: 377 -----------------FRSGRRPILIATEVAGRGLDVNDVKLVINFDFPGSCEDYVHRI 419
Query: 547 GRTGRMNQKGSV 558
GRT R N K +
Sbjct: 420 GRTARGNTKEGI 431
>At4g33370 [A] KOG0341 DEAD-box protein abstrakt
Length = 542
Score = 86.7 bits (213), Expect = 9e-17
Identities = 98/423 (23%), Positives = 170/423 (40%), Gaps = 81/423 (19%)
Query: 142 KNLLDVKYNPKENNVQEFKKHLKPSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMA 201
KN +D+K+ + + K + P+PIQ + ++ + + + A TGSGKT+
Sbjct: 97 KNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGL----PVVLSGRDMIGI--AFTGSGKTLV 150
Query: 202 YLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYK 261
+++P++ + E+ P A+V + P+ EL +Q Y V + +L Y
Sbjct: 151 FVLPMIILALQEEIMMPIAAGEGPIALV----ICPSRELAKQTYDVVEQFVASLVEDGYP 206
Query: 262 ------WDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQVKFLVMDE 315
G + ++ +K + I+V TPG++ + ++ L + L +DE
Sbjct: 207 RLRSLLCIGGVDMRSQLDVVKKGVHIVVATPGRLKDILAKKKMS-----LDACRLLTLDE 261
Query: 316 ADTLLDKSWVEDSYSTIKHMQNLNHVLFCSATIPKEFQKTITRLFPTVGVIASPNLHKIN 375
AD L+D + +D H ++ L SAT+P + Q +F T + P +
Sbjct: 262 ADRLVDLGFEDDIRHVFDHFKSQRQTLLFSATMPAKIQ-----IFAT-SALVKPVTVNVG 315
Query: 376 HKNQIKLINADMAPYKGSKTKALAQILYSIN--RDNIDPGFEKRVVIFVNEKENVPLVAT 433
L Y K A+I+Y + + P V+IF K +V +
Sbjct: 316 RAGAANLDVIQEVEY----VKQEAKIVYLLECLQKTTPP-----VLIFCENKADVDDIHE 366
Query: 434 KLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIV 493
L + G + VA+ G E+R I F K
Sbjct: 367 YLLLK-GVEAVAIHGGKDQEDRDYAISLFKAGKK-------------------------- 399
Query: 494 IEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMN 553
VLV TDV ++G++F ++V+ YD+P + VHR+GRTGR
Sbjct: 400 ----------------DVLVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCG 443
Query: 554 QKG 556
+ G
Sbjct: 444 KTG 446
>Hs13775232 [A] KOG0331 ATP-dependent RNA helicase
Length = 580
Score = 86.3 bits (212), Expect = 1e-16
Identities = 88/359 (24%), Positives = 161/359 (44%), Gaps = 72/359 (20%)
Query: 189 LIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTV 248
L +A+TGSGKT A+L+P++ L + ++IL PT EL Q+ +
Sbjct: 244 LASADTGSGKTAAFLLPVI------------MRALFESKTPSALILTPTRELAIQIERQA 291
Query: 249 SKLEPALG-MHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQ 307
+L L M T G + L+ + +++ TPG++L + S V L
Sbjct: 292 KELMSGLPRMKTVLLVGGLPLPPQLYRLQQHVKVIIATPGRLLDIIKQSSVE-----LCG 346
Query: 308 VKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFCSATIPKEFQKTITRLFPTVGVIA 367
VK +V+DEADT+L + + ++++ N + SATIP ++ +A
Sbjct: 347 VKIVVVDEADTMLKMGFQQQVLDILENIPNDCQTILVSATIPTSIEQ-----------LA 395
Query: 368 SPNLHKINHKNQIKLINADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIFVNEKEN 427
S LH N +++I + K + QI+ + DP +K++ +N+K+
Sbjct: 396 SQLLH-----NPVRIITGE----KNLPCANVRQIILWVE----DPAKKKKLFEILNDKKL 442
Query: 428 V-PLVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMK 486
P V + + G D+++ + +K+T KS + +E + +
Sbjct: 443 FKPPVLVFVDCKLGADLLS------------------EAVQKITGLKSISIHSEKS---Q 481
Query: 487 IPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHR 545
I NI+ + +E +V+V+T VL RG++ R VV +D+P++ + VH+
Sbjct: 482 IERKNIL--------KGLLEGDYEVVVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQ 532
>CE26853 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 544
Score = 85.9 bits (211), Expect = 2e-16
Identities = 85/394 (21%), Positives = 170/394 (42%), Gaps = 67/394 (17%)
Query: 171 TAIYQTSKTLMDPQLQVR--LIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAI 228
T + + +DP L+ + L +A+TGSGKT+A+L+P ++ L + +W+ +
Sbjct: 89 TTMTEIQAKSIDPLLEGKDVLASAKTGSGKTLAFLLPAIELLHKL-----NWKQHNGTGV 143
Query: 229 VRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGK 288
II+ PT EL Q Y +S+L + GS+ + L + I+V TPG+
Sbjct: 144 ---IIVSPTRELSMQTYGVLSELLEGSNLTYGLVMGGSNRSAEKDKLAKGVSILVATPGR 200
Query: 289 ILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFCSATI 348
+L + N + ++ +K L++DEAD +LD + + ++H+ + SAT
Sbjct: 201 LLD----HLQNTDNFLVRNMKCLIIDEADRILDIGFEIEMQQVLRHLPKQRQSMLFSATH 256
Query: 349 PKEFQKTITRLFPTVGVIASPNLHKINHKNQIKLINADMAPYKGSKTKALAQILYSINRD 408
+ + + + + ++P ++ K + + Y + + +L++ +
Sbjct: 257 SPKVDELV-----KLALHSNPVRVSVHEKAEEATVEGLQQGYIVAPSDKRLLLLFTFLKK 311
Query: 409 NIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKK 468
N K+V++F + +V ++ H+++ ++D P
Sbjct: 312 N----KTKKVMVFFSSCNSV---------KFHHELL----------------NYIDIP-C 341
Query: 469 MTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCR 528
M+ +K T + F ++ +L+ TDV ARG++
Sbjct: 342 MSIHGKQKQQKRTTTFFQ-----------------FCQAETGILLCTDVAARGLDIPAVD 384
Query: 529 YVVLYDIPNTPVDLVHRVGRTGR-MNQKGSVFII 561
++V YD + P + +HRVGRT R N G ++
Sbjct: 385 WIVQYDPTDEPREYIHRVGRTARGTNGSGKALLV 418
>At3g19760 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 408
Score = 85.5 bits (210), Expect = 2e-16
Identities = 95/399 (23%), Positives = 162/399 (39%), Gaps = 89/399 (22%)
Query: 164 KPSPIQTTAIYQTSKTLMDPQLQVR--LIAAETGSGKTMAYLIPLVDYLKRTEMENPSWE 221
KPS IQ A+ P LQ R + A++G+GKT + + + + E
Sbjct: 57 KPSAIQQRAVM--------PILQGRDVIAQAQSGTGKTSMIALSVCQVVDTSSRE----- 103
Query: 222 TLKDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRIDI 281
V+++IL PT EL Q +T+ + + + G+S + L+ + +
Sbjct: 104 -------VQALILSPTRELATQTEKTIQAIGLHANIQAHACIGGNSVGEDIRKLEHGVHV 156
Query: 282 MVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHV 341
+ TPG++ M+ R +K L++DE+D +L + + + Y +++ V
Sbjct: 157 VSGTPGRVCD-----MIKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPDLQV 211
Query: 342 LFCSATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQIKLINADMAPYKGSKTKALA-- 399
SAT+P E + +T F T V KI L+ D +G K +A
Sbjct: 212 CLVSATLPHEILE-MTSKFMTEPV-------KI-------LVKRDELTLEGIKQFFVAVE 256
Query: 400 --QILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSVEERLE 457
+ + D D + VIF N K V ++ K+ + V ++ G+ +ER
Sbjct: 257 KEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDYLSEKM-RSHNFTVSSMHGDMPQKER-- 313
Query: 458 KIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDV 517
+ ++ E F +VL+TTDV
Sbjct: 314 ---------------------------------DAIMNE-------FRSGDSRVLITTDV 333
Query: 518 LARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKG 556
ARGI+ + V+ YD+PN +HR+GR+GR +KG
Sbjct: 334 WARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKG 372
>SPBC12C2.06 [A] KOG0332 ATP-dependent RNA helicase
Length = 503
Score = 85.1 bits (209), Expect = 3e-16
Identities = 105/418 (25%), Positives = 172/418 (41%), Gaps = 91/418 (21%)
Query: 161 KHLKPSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRTEMENPSW 220
K KPS IQ A+ L+ + + +++G+GKT A+ + + L R + P
Sbjct: 133 KFQKPSKIQEKAL----PLLLSNPPRNMIGQSQSGTGKTAAFALTM---LSRVDASVPK- 184
Query: 221 ETLKDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRID 280
++I L P+ EL Q+ V+++ G +T A + K
Sbjct: 185 --------PQAICLAPSRELARQIMDVVTEM----GKYTEVKTAFGIKDSVPKGAKIDAQ 232
Query: 281 IMVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHM--QNL 338
I++ TPG ++ L ++ D +K V+DEAD +LD+ + D IKH+ +N
Sbjct: 233 IVIGTPGTVMDLMKRRQLDARD-----IKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNT 287
Query: 339 NHVLFCSATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQIKLINADMAPYKGSKTKAL 398
VLF SAT + +K R +PN ++I K + + Y +++
Sbjct: 288 QIVLF-SATFSERVEKYAERF--------APNANEIRLKTEELSVEGIKQLYMDCQSE-- 336
Query: 399 AQILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSVEERLEK 458
+ Y++ + + +IF +K+ +A ++ GH V LTGN +R
Sbjct: 337 -EHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTAD-GHTVACLTGNLEGAQR--- 391
Query: 459 IKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVL 518
MD +F T KVLVTT+V+
Sbjct: 392 -DAIMD--------------------------------------SFRVGTSKVLVTTNVI 412
Query: 519 ARGINFRGCRYVVLYDIP------NTPVDLVHRVGRTGRMNQKG-SVFIITGKRVKNW 569
ARGI+ VV YD+P P +HR+GRTGR + G S+ + K K+W
Sbjct: 413 ARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDK--KSW 468
>SPAC1F5.10 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 394
Score = 85.1 bits (209), Expect = 3e-16
Identities = 92/409 (22%), Positives = 170/409 (41%), Gaps = 88/409 (21%)
Query: 165 PSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETLK 224
PS +Q+ AI Q K + + A++G+GKT + I ++ + + +
Sbjct: 44 PSAVQSRAIIQICKG------RDVIAQAQSGTGKTATFSIGILQSIDLSVRDT------- 90
Query: 225 DKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRIDIMVT 284
+++IL PT EL Q+ V L + + + G+S ++ L ++
Sbjct: 91 -----QALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLDYGQHVVSG 145
Query: 285 TPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFC 344
TPG++ M+ R + VK L++DEAD LL++ + E Y +++ V+
Sbjct: 146 TPGRVTD-----MIRRRNLRTRNVKMLILDEADELLNQGFKEQIYDIYRYLPPGTQVVVV 200
Query: 345 SATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQIK-LINADMAPYKGSKTKALA---- 399
SAT+P++ + +T F T N ++ L+ D +G K +A
Sbjct: 201 SATLPQDVLE-MTNKFTT---------------NPVRILVKRDELTLEGLKQYFIAVEKE 244
Query: 400 QILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSVEERLEKI 459
+ + D D + VIF N + V + K+ + V ++ G +ER
Sbjct: 245 EWKFDTLCDLYDTLTITQAVIFCNSRRKVDWLTEKM-REANFTVTSMHGEMPQKER---- 299
Query: 460 KPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLA 519
+ I +D F + +VL+ TD+ A
Sbjct: 300 -----------------------------------DAIMQD---FRQGNSRVLICTDIWA 321
Query: 520 RGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKG-SVFIITGKRVK 567
RGI+ + V+ YD+P + +HR+GR+GR +KG ++ +T + V+
Sbjct: 322 RGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVTNEDVR 370
>CE29052 [A] KOG0335 ATP-dependent RNA helicase
Length = 1156
Score = 85.1 bits (209), Expect = 3e-16
Identities = 106/436 (24%), Positives = 183/436 (41%), Gaps = 73/436 (16%)
Query: 154 NNVQEFKKHLKPSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRT 213
+N++ K + +P+PIQ + + +M V A TGSGKT+A+LIP V +K
Sbjct: 749 DNLKRMKMN-RPTPIQRASFFP----IMHGNDVVA--CAHTGSGKTLAFLIPFV--IKLM 799
Query: 214 EMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVE 273
E + +K R +I+ PT ELV Q + T +L G+ G S V+
Sbjct: 800 EEFEKDRDVTDEKPSPRLLIVAPTRELVNQTFTTARQLTYETGLKCGLAFGGYSRNANVQ 859
Query: 274 ALK--GRIDIMVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYST 331
L+ +++I+V T G++ N V+ LS++K++V+DEAD ++D + + S
Sbjct: 860 HLRSFSQLNILVATMGRLQDFVNAGEVS-----LSKMKYIVLDEADRMVDSNDFGEEVSK 914
Query: 332 I--KHMQNLNHVLFCSATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQIKLINADMAP 389
I + + SA+ ++ Q F G + K N+ I+ + P
Sbjct: 915 IIGSPGERTQQTVLFSASFSEDLQSDDLPKFVKEG-YTMLQVDKFGTANE--KIDQKILP 971
Query: 390 YKGSKTKALAQILYSINRDNI----DPGFEK-RVVIFVNEKENVPLVATKLANQYGHDVV 444
++ + L I+ + + D EK + +IFVN + +A L + G +
Sbjct: 972 VPRTEKRDAIYKLLGIDENTVTLLPDAPIEKQKTLIFVNSVKFCDTLAA-LISSAGVSTI 1030
Query: 445 ALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAF 504
++ + E+R + + F
Sbjct: 1031 SMHSYQNQEQRDRTL------------------------------------------DDF 1048
Query: 505 VESTLKVLVTTDVLARGINFRGCRYVVLYDIP--NTPVDLVHRVGRTGRMNQKGSVFIIT 562
+ +V ++V ARG+N G +VV YD+P N + V+R+GRTGR G+
Sbjct: 1049 RRGKYQCMVASNVCARGLNIAGLDHVVNYDMPDKNGFDEYVNRIGRTGRAGFTGTSTAFV 1108
Query: 563 GKRVKNWVKAIPSIVS 578
V+N IP +VS
Sbjct: 1109 D--VENDTDIIPCLVS 1122
>CE27030 [A] KOG0338 ATP-dependent RNA helicase
Length = 763
Score = 85.1 bits (209), Expect = 3e-16
Identities = 93/409 (22%), Positives = 169/409 (40%), Gaps = 95/409 (23%)
Query: 192 AETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSKL 251
A TG+GKT A+++P+++ + + P K + R ++L+PT EL QV+Q KL
Sbjct: 192 AATGTGKTAAFVLPILERM----IYRP-----KGASCTRVLVLVPTRELAIQVFQVFRKL 242
Query: 252 EPALGMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILS------LFNISMV------- 298
+ + G K AL+ D++V TPG+++ FN+S +
Sbjct: 243 STFIQLEVCLCAGGLDLKAQEAALRSGPDVVVATPGRLIDHLHNSPSFNLSNIEVFFKTP 302
Query: 299 NRPDRILSQ-------VKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFCSATIPKE 351
N P + S+ + LV+DEAD +L++++ + I+ L SAT+ +E
Sbjct: 303 NIPPKKNSRKICKIPNFQVLVLDEADRMLEEAFRDQMNELIRLCAQNRQTLLFSATMTEE 362
Query: 352 FQKTITRLFPTVGVIASPNLHK-------INHKNQIKLINADMAPYKGSKTKALAQILYS 404
+ +AS +L K N +KL + G +T A +
Sbjct: 363 IDE-----------LASMSLQKPVKIFINENTDTALKLRQEFIRIRAGRETDREAMVAAL 411
Query: 405 INRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSVEERLEKIKPFMD 464
+ R F+ ++FV K++ + L G V + + + +R+E + F
Sbjct: 412 VTRT-----FQTNTIVFVRTKKDCQRMQI-LLGLLGIKVGQMQSSLTQGQRIESLSKF-- 463
Query: 465 PPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINF 524
+K+E + VLV+TD+ +RG++
Sbjct: 464 -------KKAE---------------------------------IDVLVSTDLASRGLDI 483
Query: 525 RGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKGSVFIITGKRVKNWVKAI 573
G + V+ ++P + +HRVGRT R + G + G+ + +K I
Sbjct: 484 EGVQTVINMNMPKSIKQYIHRVGRTARAGKAGRSISLVGEDERKLLKEI 532
>CE11190 [A] KOG0347 RNA helicase
Length = 746
Score = 85.1 bits (209), Expect = 3e-16
Identities = 96/409 (23%), Positives = 171/409 (41%), Gaps = 53/409 (12%)
Query: 164 KPSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETL 223
+P+ IQ+ + + D L AAETGSGKT+A+ IPLV L + ++ E+
Sbjct: 177 EPTEIQSAVLPAAVRDRQDV-----LGAAETGSGKTLAFGIPLVARLLESSDDSQETEST 231
Query: 224 KDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRI---- 279
+ + R++I+ PT ELV Q+ + ++ L + T + A S G + + RI
Sbjct: 232 EVRG-PRALIVAPTRELVIQIMKHINAL-----ISTTQLIATSIVGGLAQVKQERIISQQ 285
Query: 280 --DIMVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQN 337
DI+V TPG++ ++ + +K LV+DE D ++++ + ++ + H+ N
Sbjct: 286 RPDIVVATPGRLWAMMQEAETGEFLAEWKDLKCLVVDETDRMVEEGY----FAELTHILN 341
Query: 338 LNHVLFCSATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQIKLINADMAPYKGSKTKA 397
H E +K T +F A K + K +++ + K
Sbjct: 342 KIHE-------ESEKEKLQTLVFSATLTFAKAQDVAEEEKKKAKELSSQQKIQRLIKLTG 394
Query: 398 LAQILYSINRDNIDPG-----FEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSV 452
L + + + G E R+ +++ LV L G +V + D+
Sbjct: 395 LRENKHKVIDLTRQMGTAGCLVEARINCGNLLEKDTSLVYL-LTRYPGRTIVFVNSIDAA 453
Query: 453 EERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVL 512
+K P + + +K +N E F ES VL
Sbjct: 454 RRLYSVLKSVNIDPMILHAKMIQKQRLKNL-------------------EKFSESKNAVL 494
Query: 513 VTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKGSVFII 561
+ TDV ARG++ +G +V+ Y +P +HR GRT R + +G ++
Sbjct: 495 LATDVAARGLDIQGIDHVIHYQVPKKVEIYIHRSGRTARASHRGLTVVL 543
>7300808 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 663
Score = 84.7 bits (208), Expect = 3e-16
Identities = 96/366 (26%), Positives = 157/366 (42%), Gaps = 74/366 (20%)
Query: 191 AAETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSK 250
AA+TGSGKT+A+LIP V+ + + + + II+ PT EL Q + + +
Sbjct: 213 AAQTGSGKTLAFLIPAVELINKLRFMPRNGTGV--------IIISPTRELSMQTFGVLKE 264
Query: 251 LEPALGMHTYKWDAGSSYKGFVEALKGR-IDIMVTTPGKILSLFNISMVNRPDRILSQVK 309
L A HTY G S + G+ I+I+V TPG++L + N PD + ++
Sbjct: 265 L-MAHHHHTYGLVMGGSNRQVESEKLGKGINILVATPGRLLD----HLQNSPDFLYKNLQ 319
Query: 310 FLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFCSATIPKEFQKTITRLFPTVGVIASP 369
L++DE D +L+ + E+ +K + NL +PK Q T LF
Sbjct: 320 CLIIDEVDRILEIGFEEE----LKQIINL---------LPKRRQ---TMLFSATQTARIE 363
Query: 370 NLHKINHKNQIKLINADMAPYKGSKTKALAQILYSINRDNID----PGFEKRVVIFVNEK 425
L K+ K ++ +Y DN D G E+ ++ +EK
Sbjct: 364 ALSKLALK---------------------SEPIYVGVHDNQDTATVDGLEQGYIVCPSEK 402
Query: 426 ENVPLVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTM 485
+ L N+ +V + SV+ E ++D P +T+ ++ T+ T T
Sbjct: 403 RLLVLFTFLKKNRKKKVMVFFSSCMSVKYHHELFN-YIDLP--VTSIHGKQKQTKRTTTF 459
Query: 486 KIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHR 545
F + +L+ TDV ARG++ ++V YD P+ P + +HR
Sbjct: 460 ----------------FQFCNAESGILLCTDVAARGLDIPQVDWIVQYDPPDDPREYIHR 503
Query: 546 VGRTGR 551
VGRT R
Sbjct: 504 VGRTAR 509
>YMR290c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 505
Score = 84.3 bits (207), Expect = 5e-16
Identities = 102/432 (23%), Positives = 183/432 (41%), Gaps = 92/432 (21%)
Query: 144 LLDVKYNPKENN----------VQEFKKHLKPSPIQTTAIYQTSKTLMDPQLQVRLI--- 190
++D K K+NN V++F++ LK S AI + T M +Q R I
Sbjct: 19 VVDEKSTSKQNNAAPEGEQTTCVEKFEE-LKLSQPTLKAIEKMGFTTMT-SVQARTIPPL 76
Query: 191 --------AAETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVE 242
AA+TGSGKT+A+LIP ++ L + K + I++ PT EL
Sbjct: 77 LAGRDVLGAAKTGSGKTLAFLIPAIELLHSLK--------FKPRNGTGIIVITPTRELAL 128
Query: 243 QVYQTVSKLEPALGMHTYKWD---AGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVN 299
Q++ +L + H+ + G++ + E L +++++ TPG++L + N
Sbjct: 129 QIFGVAREL---MEFHSQTFGIVIGGANRRQEAEKLMKGVNMLIATPGRLLD----HLQN 181
Query: 300 RPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFCSATIPKEFQKTITRL 359
+ +K L++DEAD +L+ + ++ IK +P E ++++ L
Sbjct: 182 TKGFVFKNLKALIIDEADRILEIGFEDEMRQIIK-------------ILPNEDRQSM--L 226
Query: 360 FPTVGVIASPNLHKINHKNQIKLINADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVV 419
F +L +I+ + IN + P + T G E+ V
Sbjct: 227 FSATQTTKVEDLARISLRPGPLFIN--VVPETDNSTA---------------DGLEQGYV 269
Query: 420 IFVNEKENVPLVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTT 479
+ ++K + L + NQ +V L+ +SV+ E + ++D P K ++
Sbjct: 270 VCDSDKRFLLLFSFLKRNQKKKIIVFLSSCNSVKYYAELLN-YIDLPVLELHGKQKQQKR 328
Query: 480 ENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTP 539
NT F + +L+ TDV ARG++ +++ +D P+ P
Sbjct: 329 TNTFF------------------EFCNAERGILICTDVAARGLDIPAVDWIIQFDPPDDP 370
Query: 540 VDLVHRVGRTGR 551
D +HRVGRT R
Sbjct: 371 RDYIHRVGRTAR 382
>YFL002c [A] KOG0345 ATP-dependent RNA helicase
Length = 606
Score = 84.3 bits (207), Expect = 5e-16
Identities = 102/409 (24%), Positives = 175/409 (41%), Gaps = 77/409 (18%)
Query: 189 LIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTV 248
++ + TGSGKT A++IP+++ + + E ++ KA S+I+ PT EL Q+ V
Sbjct: 48 VVDSVTGSGKTAAFVIPVLEKVVKEEANTSKFK----KAHFHSLIIAPTRELSRQIESVV 103
Query: 249 --------SKLEPALGMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNR 300
S L P + + L+ R I++ TPG++L + V
Sbjct: 104 LSFLEHYPSDLFPIKCQLLVGTNEATVRDDVSNFLRNRPQILIGTPGRVLDFLQMPAVKT 163
Query: 301 PDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFCSATIPKEFQKTITRLF 360
S +VMDEAD LLD S+++D+ ++ + SAT+ + + +F
Sbjct: 164 -----SACSMVVMDEADRLLDMSFIKDTEKILRLLPKQRRTGLFSATM----RSAGSDIF 214
Query: 361 PTVGVIASPNLHKINHKNQ----IKLINADMAPYKGSKTKALAQILYSINRDNIDPGFEK 416
T + +P +N KNQ +KL + P K + L IL + F+K
Sbjct: 215 KT--GLRNPVRITVNSKNQAPSSLKLNYCVVNP--AEKLQLLVSILNNYK-------FKK 263
Query: 417 RVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEK 476
+V F T ++ Y + + G ++ + +++ F K T+ +++
Sbjct: 264 CIVYF----------PTCVSVSYFYSFIQYLGKRNI--LVNEVEIFSLHGKLQTSARTKT 311
Query: 477 VTTENTVTMKIPNSNIVIEEIPEDNEAFVES-TLKVLVTTDVLARGINFRGCRYVVLYDI 535
+T AF +S + VL TTDV ARGI+ V+ D
Sbjct: 312 LT------------------------AFTDSLSNSVLFTTDVAARGIDIPDVDLVIQLDP 347
Query: 536 PNTPVDLVHRVGRTGRMNQKG-SVFIITGKRVKNWVKAIPSIVSKNVSI 583
P +HR GRTGR N+ G ++ + R +++ IP + KNV +
Sbjct: 348 PTNTDMFMHRCGRTGRANRVGKAITFLNEGREEDF---IPFMQVKNVEL 393
>7299019 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 84.3 bits (207), Expect = 5e-16
Identities = 95/397 (23%), Positives = 156/397 (38%), Gaps = 85/397 (21%)
Query: 164 KPSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETL 223
KPS IQ +I K + + A++G+GKT + I ++ L T E
Sbjct: 48 KPSAIQQRSITPIVKG------RDVIAQAQSGTGKTATFSISILQSLDTTLRET------ 95
Query: 224 KDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRIDIMV 283
+ + L PT EL Q+ + + L + + + G++ + L I+
Sbjct: 96 ------QVLCLSPTRELAVQIQKVILALGDMMNVQCHVCIGGTNLGEDIRKLDYGQHIVS 149
Query: 284 TTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLF 343
TPG++ M+ R +K LV+DEAD +L+K + E Y +++ V+
Sbjct: 150 GTPGRVFD-----MIKRRVLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVL 204
Query: 344 CSATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQIKLINADMAPYKGSKTKALA---- 399
SAT+P E + +T F T + L+ D +G K +A
Sbjct: 205 ISATLPHEILE-MTSKFMTDPIRI--------------LVKRDELTLEGIKQFFVAVERE 249
Query: 400 QILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSVEERLEKI 459
+ + D D + VIF N K V + K+ + V ++ G+ +ER E +
Sbjct: 250 EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKM-REANFTVSSMHGDMPQKERDEIM 308
Query: 460 KPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLA 519
K F +VL+TTDV A
Sbjct: 309 KEFR------------------------------------------AGQSRVLITTDVWA 326
Query: 520 RGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKG 556
RGI+ + V+ YD+PN +HR+GR+GR +KG
Sbjct: 327 RGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKG 363
>Hs4758140 [A] KOG0326 ATP-dependent RNA helicase
Length = 472
Score = 84.0 bits (206), Expect = 6e-16
Identities = 99/433 (22%), Positives = 175/433 (39%), Gaps = 91/433 (21%)
Query: 164 KPSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETL 223
KPSPIQ +I L + R A+ G+GK+ AYLIPL++ L +
Sbjct: 107 KPSPIQEESI---PIALSGRDILAR---AKNGTGKSGAYLIPLLERL----------DLK 150
Query: 224 KDKAIVRSIILLPTHELVEQVYQTVSKLEPALG-MHTYKWDAGSSYKGFVEALKGRIDIM 282
KD +++++++PT EL QV Q ++ +G G++ + + L + ++
Sbjct: 151 KDN--IQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVV 208
Query: 283 VTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVL 342
+ TPG+IL L + + V+ +V+DEAD LL + +V+ I + +L
Sbjct: 209 IATPGRILDLIKKGVAK-----VDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQIL 263
Query: 343 FCSATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQIKLINADMAPYKGSKTKALAQIL 402
SAT P QK + + P + + +K + A + L
Sbjct: 264 LYSATFPLSVQKFMN------SHLQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTL 317
Query: 403 YSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSVEERLEKIKPF 462
+S + N + +IF N + V L+A K+ +Q G+ + E R
Sbjct: 318 FSRLQIN-------QSIIFCNSSQRVELLAKKI-SQLGYSCFYIHAKMRQEHR------- 362
Query: 463 MDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGI 522
N V + F + LV TD+ RGI
Sbjct: 363 ----------------------------NRVFHD-------FRNGLCRNLVCTDLFTRGI 387
Query: 523 NFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKG-SVFIIT----------GKRVKNWVK 571
+ + V+ +D P +HR+GR+GR G ++ +IT +++ +K
Sbjct: 388 DIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIK 447
Query: 572 AIPSIVSKNVSIS 584
IPS + K++ ++
Sbjct: 448 PIPSNIDKSLYVA 460
>At1g71370 [A] KOG0345 ATP-dependent RNA helicase
Length = 558
Score = 84.0 bits (206), Expect = 6e-16
Identities = 88/387 (22%), Positives = 169/387 (42%), Gaps = 65/387 (16%)
Query: 189 LIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTV 248
++ A TGSGKT+A+L+P ++ ++R+ P V +I+ PT EL Q+++
Sbjct: 57 VVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQ------VMGVIISPTRELSAQIHKVA 110
Query: 249 SKLEPAL-GMHTYKWDAGSSYKGFVEALKGR-IDIMVTTPGKILSLFNISMVNRPDRI-L 305
L +++ G + + L+ ++++ TPG++ M+ R + +
Sbjct: 111 EPFVSTLPNVNSVLLVGGREVEADMNTLEEEGANLLIGTPGRLSD-----MMKRMEFLDF 165
Query: 306 SQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFCSATIPKEFQKTITRLFPTVGV 365
++ L++DEAD LLD + + +N+++ + +PK+ + T LF
Sbjct: 166 RNLEILILDEADRLLDMGF----------QKQVNYII---SRLPKQRR---TGLFSATQT 209
Query: 366 IASPNLHKINHKNQIKLINADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIFVNEK 425
A +L K +N +++I+ SK+K + + + D + V + + K
Sbjct: 210 QAVADLAKAGLRNAMEVISG-----AESKSKTSSGLYCEYLKCEADQKSSQLVHLLIENK 264
Query: 426 ENVPLVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKV-TTENTVT 484
+V + + L+ K+ T KS +T +
Sbjct: 265 NKKLVVFFMTCACVDYWGLVLS--------------------KIPTLKSISFFSTHGKMD 304
Query: 485 MKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVH 544
K ++ + +F E++ VL+ TDV ARG++ G YVV YD P P +H
Sbjct: 305 QKGRDTALA---------SFTEASSGVLLCTDVAARGLDIPGIDYVVQYDPPQDPDVFIH 355
Query: 545 RVGRTGRMNQKGSVFIITGKRVKNWVK 571
RVGRT RM ++G + + ++V+
Sbjct: 356 RVGRTARMERQGRAIVFLMPKETDYVE 382
>ECU02g1520 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 425
Score = 83.6 bits (205), Expect = 8e-16
Identities = 108/434 (24%), Positives = 177/434 (39%), Gaps = 112/434 (25%)
Query: 136 SESLLNKNLLDVKYNPKENNVQEFKKHLKPSPIQTTAIYQTSKTLMDPQLQVRLIAAETG 195
S+ L+ LL YN Q F+K PS IQ +AI + ++ +++G
Sbjct: 54 SDMGLSDELLKAIYN------QGFEK---PSLIQKSAIPHILRG------HNVVVQSKSG 98
Query: 196 SGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSKLEPAL 255
+GKT+AY ++ K E + +++ PT EL QV + +S L L
Sbjct: 99 TGKTIAYTCGVLGNTKIGER-------------TQVMVVTPTRELSTQVTEVISGLAGPL 145
Query: 256 GMHTYKWDAGSSYKGFVEALKGRI------DIMVTTPGKILSLFNISMVNRPDRILSQVK 309
G+ + ALK +I +++V +PG IL L + +N VK
Sbjct: 146 GIKVFS------------ALKNKITDSIGEEVVVGSPGTILKLMELGKLN-----YKGVK 188
Query: 310 FLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFCSATIPKEFQKTITRLFPTVGVIASP 369
+V+DEAD LLDK + I + + ++F SAT ++ ++TI P +
Sbjct: 189 MIVLDEADILLDKDMMGTQTFRILKLISGAQMIFFSATFSEQVKQTIEFYAPDAVKMYEE 248
Query: 370 NLHKINHKNQIKLINADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIFVNEKENVP 429
K ++IKL + +G + + LY + +++IFV+ K V
Sbjct: 249 RNGK---PDEIKLFYIEA---EGENKRRALKSLYEYLSIS-------QMIIFVSTKATVN 295
Query: 430 LVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPN 489
+ KL + H V L G+ +EER EK +
Sbjct: 296 YLRKKLEDDL-HSVSCLHGDLEIEER-------------------EKAVGD--------- 326
Query: 490 SNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIP-----NTPVDLVH 544
F S K+L+TTDV +RG++ +V YD+P + +H
Sbjct: 327 --------------FRSSKSKILLTTDVFSRGMDIPQVNLIVNYDLPIYRGVASTQTYIH 372
Query: 545 RVGRTGRMNQKGSV 558
R+GR+GR + G V
Sbjct: 373 RIGRSGRFGRTGFV 386
>CE25231 [A] KOG0343 RNA Helicase
Length = 732
Score = 83.6 bits (205), Expect = 8e-16
Identities = 112/477 (23%), Positives = 194/477 (40%), Gaps = 91/477 (19%)
Query: 98 EGDPKILE--RSKRLVSKINDF---SQLKILPEVRDKLMEVISSESLLNKNLLDVKYNPK 152
E DP + + + KRL+ K + +L EV K E++ S D + +
Sbjct: 27 EQDPSVRKALKEKRLLKKRKQDLKGQEETMLDEVEQKYQEMLKKSSRTFLRFEDFPLSWR 86
Query: 153 ENNVQEFKKHLKPSPIQ--TTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYL 210
+ + KP+ IQ T A T ++ AA+TGSGKT+A +IP+++ L
Sbjct: 87 TLEGLKDNDYTKPTEIQRDTIAYSLTGSDVVG--------AAKTGSGKTLALVIPVLEAL 138
Query: 211 KRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMH---TYKWDAGSS 267
R + +P + + ++I+ PT EL Q + T++ A+G H + G S
Sbjct: 139 WRAKW-SPDYG-------LGALIISPTRELALQTFSTIN----AVGAHHGFSCGLVIGGS 186
Query: 268 YKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVED 327
F I+I+V TPG++L M ++ LV+DEAD +LD + +
Sbjct: 187 DVAFERNRISGINIIVCTPGRLLQ----HMDENAQMSCDSLQVLVLDEADRMLDMGFSKQ 242
Query: 328 SYSTIKHMQNLNHVLFCSATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQIKLINADM 387
S I ++ L SAT + K + R+ V S H+N +
Sbjct: 243 LNSIINNLPAERQTLLFSATQTRNV-KDLCRVCTNDPVFVSV------HENA-----SAA 290
Query: 388 APYKGSKTKALAQILYSINR--DNIDPGFEKRVVIFVNEKENVPLVATKLAN-QYGHDVV 444
P ++ + + + IN I+ +K+ ++FV+ + + + + G V+
Sbjct: 291 TPDNLKQSYVIVEEEHKINALWSFIEAHRKKKSLVFVSSCKQARFLTEAFSQLRPGLPVM 350
Query: 445 ALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAF 504
L G + ++R+E F
Sbjct: 351 GLWGTMNQKKRIETF------------------------------------------TKF 368
Query: 505 VESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKGSVFII 561
ES VL+ TDV +RG++F +V+ D P D +HRVGR+ RM+ G+ ++
Sbjct: 369 DESKAAVLIATDVASRGLDFEHIDWVIQVDCPAQIDDYIHRVGRSARMDDSGNSLLM 425
>At5g63630 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 522
Score = 83.6 bits (205), Expect = 8e-16
Identities = 96/417 (23%), Positives = 165/417 (39%), Gaps = 76/417 (18%)
Query: 162 HLKPSPIQTTAI----YQTSKTLMDPQLQVRL------IAAETGSGKTMAYLIPLVDYLK 211
H SP+ AI Y+T + + L + L A+TG+GKT+A+L+P ++ +
Sbjct: 58 HYPLSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVV 117
Query: 212 RTEMENPSWETLKDKAIVRSIILLPTHELVEQVY---QTVSKLEPALGMHTYKWDAGSSY 268
++ +P + + ++++ PT EL Q T+ K P++G+ G +
Sbjct: 118 KSPPTSPD----NKRPPILALVICPTRELANQAATEANTLLKYHPSIGVQVV---IGGTR 170
Query: 269 KGFVEALK--GRIDIMVTTPGKILSLFNISMVNRPDRI--LSQVKFLVMDEADTLLDKSW 324
G + I+V TPG++ + N P L VK LV+DEAD LLD +
Sbjct: 171 LGLEQKRMQTNPCQILVATPGRLKD----HIENTPGFATRLKGVKVLVLDEADHLLDMGF 226
Query: 325 VEDSYSTIKHMQNLNHVLFCSATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQIKLIN 384
+D I + SAT+P+E R V + H+ I+
Sbjct: 227 RKDIERIISAVPKERQTFLFSATVPEE-----VRQICLVALRRDHEFVNCVHEGTIETHQ 281
Query: 385 ADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVV 444
+ + +LY++ R++I + +V++F LVA L
Sbjct: 282 QVRQMHMIASLDRHFSLLYTLLREHIMGNVDYKVIVFCTTAMVTKLVADLLG-------- 333
Query: 445 ALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAF 504
E L + P+ TR S + F
Sbjct: 334 --------ELNLNVREIHSRKPQSYRTRVSNE---------------------------F 358
Query: 505 VESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKGSVFII 561
+S +LVT+DV ARG+++ V+ +P +HR+GRTGR ++G ++
Sbjct: 359 RKSKGLILVTSDVSARGVDYPDVTLVLQVGLPKDREQYIHRLGRTGRKGKEGEGILL 415
>CE00337 [A] KOG0330 ATP-dependent RNA helicase
Length = 489
Score = 83.2 bits (204), Expect = 1e-15
Identities = 102/411 (24%), Positives = 160/411 (38%), Gaps = 80/411 (19%)
Query: 163 LKPSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRTEMENPSWET 222
+KPS IQ A+ Q + + AETGSGKT A+ IP++ L +++P
Sbjct: 65 MKPSKIQQAALPHAL------QGKDVIGLAETGSGKTGAFAIPVLQSL----LDHPQ--- 111
Query: 223 LKDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRIDIM 282
++L PT EL Q+ Q L +G+ G AL R I+
Sbjct: 112 -----AFFCLVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMALARRPHII 166
Query: 283 VTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVL 342
V TPG+++ + N L +KFL+MDEAD +L+ + + +K +
Sbjct: 167 VATPGRLVD----HLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIPRERRTY 222
Query: 343 FCSATIPKEFQK-TITRLFPTVGVIASPNLHKINHKNQIKLINADMAPYKGSKTKALAQI 401
SAT+ K+ K L V S +++ Q + P K +T +
Sbjct: 223 LFSATMTKKVSKLERASLRDPARVSVSSRYKTVDNLKQHYI----FVPNKYKET----YL 274
Query: 402 LYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSVEERLEKIKP 461
+Y +N ++F +A L Q G V L G S E+RL +
Sbjct: 275 VYLLNEH-----AGNSAIVFCATCATTMQIAVML-RQLGMQAVPLHGQMSQEKRLGSLNK 328
Query: 462 FMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARG 521
F + ++LV TDV ARG
Sbjct: 329 FKSKAR------------------------------------------EILVCTDVAARG 346
Query: 522 INFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKG-SVFIITGKRVKNWVK 571
++ V+ YD+P+ D VHRVGRT R + G ++ ++T V+ + K
Sbjct: 347 LDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGIAITVVTQYDVEAYQK 397
>7303950 [A] KOG0340 ATP-dependent RNA helicase
Length = 521
Score = 83.2 bits (204), Expect = 1e-15
Identities = 91/370 (24%), Positives = 151/370 (40%), Gaps = 74/370 (20%)
Query: 191 AAETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSK 250
AA+TGSGKT A+ +P+++ L + + +++L PTHEL Q+ +
Sbjct: 50 AAKTGSGKTFAFALPILERLSEEPVSH------------FALVLTPTHELAYQISEQFLV 97
Query: 251 LEPALGMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQVKF 310
A+G+ G+ + L R I+V PG++ + +K+
Sbjct: 98 AGQAMGVRVCVVSGGTDQMVESQKLMQRPHIVVAMPGRLAD----HLTGCDTFSFDNLKY 153
Query: 311 LVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFCSATIPKEFQKTITRLFPTVGVI---- 366
LV+DEAD +L+ + E + + LF SAT+ K+F K + +FP
Sbjct: 154 LVVDEADRMLNGDFDESLSIIERCLPKTRQNLFFSATM-KDFIKE-SSIFPIASDCFEWS 211
Query: 367 ASPNLHKINHKNQIKLINADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIFVNEKE 426
++ + +Q L+ AD + L + L +N + V+IF N K+
Sbjct: 212 QDSDVATVETLDQRYLLCADY-----DRDMVLIEALRKYREENEN----ANVMIFTNTKK 262
Query: 427 NVPLVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMK 486
L++ L N D V L G +ER+ + F KS ++ T
Sbjct: 263 YCQLLSMTLKNM-EIDNVCLHGFMRQKERVAALSRF----------KSNQIRT------- 304
Query: 487 IPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRV 546
L+ TDV ARG++ V+ + +P TP + +HRV
Sbjct: 305 -------------------------LIATDVAARGLDIPSVELVMNHMLPRTPKEYIHRV 339
Query: 547 GRTGRMNQKG 556
GRT R +KG
Sbjct: 340 GRTARAGRKG 349
>YPL119c [A] KOG0335 ATP-dependent RNA helicase
Length = 617
Score = 82.8 bits (203), Expect = 1e-15
Identities = 100/429 (23%), Positives = 169/429 (39%), Gaps = 85/429 (19%)
Query: 164 KPSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRT---EMENPSW 220
KP+P+Q +I +K + + A+TGSGKT +L PL L R+ + +
Sbjct: 176 KPTPVQKYSIPIVTKG------RDLMACAQTGSGKTGGFLFPLFTELFRSGPSPVPEKAQ 229
Query: 221 ETLKDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRID 280
K +++L PT EL Q+++ K + G+ + + D
Sbjct: 230 SFYSRKGYPSALVLAPTRELATQIFEEARKFTYRSWVRPCVVYGGAPIGNQMREVDRGCD 289
Query: 281 IMVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKH-----M 335
++V TPG++ L V+ L+ +K+LV+DEAD +LD + ++ +
Sbjct: 290 LLVATPGRLNDLLERGKVS-----LANIKYLVLDEADRMLDMGFEPQIRHIVEECDMPSV 344
Query: 336 QNLNHVLFCSATIPKEFQKTI-----TRLFPTVGVIASPNLHKINHKNQIKLINADMAPY 390
+N ++F SAT P + Q +F +VG + S + + Q L DM
Sbjct: 345 ENRQTLMF-SATFPVDIQHLARDFLDNYIFLSVGRVGSTS----ENITQRILYVDDM--- 396
Query: 391 KGSKTKALAQILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGND 450
K AL +L + ++ +IFV K + L Q A+ G+
Sbjct: 397 --DKKSALLDLLSAEHKG--------LTLIFVETKRMADQLTDFLIMQ-NFKATAIHGDR 445
Query: 451 SVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLK 510
+ ER + F +N+
Sbjct: 446 TQAERERALSAF--------------------------KANVA----------------D 463
Query: 511 VLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKGSVFIITGKRVKNWV 570
+LV T V ARG++ +V+ YD+P+ D VHR+GRTGR G +N V
Sbjct: 464 ILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATSFFNSNNQNIV 523
Query: 571 KAIPSIVSK 579
K + I+++
Sbjct: 524 KGLMEILNE 532
>YOR204w [A] KOG0335 ATP-dependent RNA helicase
Length = 604
Score = 82.8 bits (203), Expect = 1e-15
Identities = 107/434 (24%), Positives = 167/434 (37%), Gaps = 95/434 (21%)
Query: 164 KPSPIQ--TTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRTEMENPSWE 221
KP+P+Q + I + LM A+TGSGKT +L P++ +T +P E
Sbjct: 164 KPTPVQKYSVPIVANGRDLM--------ACAQTGSGKTGGFLFPVLSESFKTG-PSPQPE 214
Query: 222 T----LKDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKG 277
+ + KA ++I+ PT EL Q++ K + GS + ++
Sbjct: 215 SQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREIER 274
Query: 278 RIDIMVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSW-------VEDSYS 330
D++V TPG++ L ++ L+ VK+LV+DEAD +LD + VED
Sbjct: 275 GCDLLVATPGRLNDLLERGKIS-----LANVKYLVLDEADRMLDMGFEPQIRHIVEDCDM 329
Query: 331 TIKHMQNLNHVLFCSATIPKEFQKTI-----TRLFPTVGVIASPNLHKINHKNQIKLINA 385
T L SAT P + Q +F +VG + S + I K + + N
Sbjct: 330 T---PVGERQTLMFSATFPADIQHLARDFLSDYIFLSVGRVGSTS-ENITQK-VLYVENQ 384
Query: 386 DMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVA 445
D K AL +L S + D + +IFV K + L Q A
Sbjct: 385 D-------KKSALLDLL-SASTDGL-------TLIFVETKRMADQLTDFLIMQ-NFRATA 428
Query: 446 LTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFV 505
+ G+ + ER + F
Sbjct: 429 IHGDRTQSERERALAAFR------------------------------------------ 446
Query: 506 ESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKGSVFIITGKR 565
+LV T V ARG++ +V+ YD+P+ D VHR+GRTGR G
Sbjct: 447 SGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNSE 506
Query: 566 VKNWVKAIPSIVSK 579
N VK + I+++
Sbjct: 507 NSNIVKGLHEILTE 520
>YOR046c [A] KOG0332 ATP-dependent RNA helicase
Length = 482
Score = 82.8 bits (203), Expect = 1e-15
Identities = 116/486 (23%), Positives = 199/486 (40%), Gaps = 115/486 (23%)
Query: 121 KILPEVRDKLME-----VISSESLLNKNLLDVKYNPKEN--NVQEFK------------- 160
K++P+V +K + +ISSE + L D++ +P + + F
Sbjct: 49 KLVPKVEEKKTKQEDSNLISSEYEVKVKLADIQADPNSPLYSAKSFDELGLAPELLKGIY 108
Query: 161 --KHLKPSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRTEMENP 218
K KPS IQ A+ L+ + + +++G+GKT A+ + ++ + NP
Sbjct: 109 AMKFQKPSKIQERAL----PLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRV------NP 158
Query: 219 SWETLKDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGR 278
+ A ++I L P+ EL Q + V ++ G T F + +
Sbjct: 159 ------EDASPQAICLAPSRELARQTLEVVQEM----GKFTKITSQLIVPDSFEKNKQIN 208
Query: 279 IDIMVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHM--Q 336
++V TPG +L L ++ L ++K V+DEAD +LD+ + D +K +
Sbjct: 209 AQVIVGTPGTVLDLMRRKLMQ-----LQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPK 263
Query: 337 NLNHVLFCSATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQIKLINADMAPYKGSKTK 396
+ VLF SAT ++ ++ P + +++N + IK + D + K
Sbjct: 264 DTQLVLF-SATFADAVRQYAKKIVPNANTL-ELQTNEVN-VDAIKQLYMD-CKNEADKFD 319
Query: 397 ALAQI--LYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSVEE 454
L ++ L +I +IFV K+ ++ KL ++ GH+V L G+ +E
Sbjct: 320 VLTELYGLMTIGSS----------IIFVATKKTANVLYGKLKSE-GHEVSILHGDLQTQE 368
Query: 455 RLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVT 514
R I + F E KVL+T
Sbjct: 369 RDRLI------------------------------------------DDFREGRSKVLIT 386
Query: 515 TDVLARGINFRGCRYVVLYDIPN------TPVDLVHRVGRTGRMNQKG-SVFIITGKRVK 567
T+VLARGI+ VV YD+P P +HR+GRTGR +KG ++ + K
Sbjct: 387 TNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSF 446
Query: 568 NWVKAI 573
N + AI
Sbjct: 447 NILSAI 452
>ECU10g0440 [A] KOG0330 ATP-dependent RNA helicase
Length = 400
Score = 82.8 bits (203), Expect = 1e-15
Identities = 88/375 (23%), Positives = 158/375 (41%), Gaps = 76/375 (20%)
Query: 189 LIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTV 248
+ ++TGSGKT+A+++P+V +L + +N S+ L ++ PT EL Q+ +
Sbjct: 42 IAVSQTGSGKTLAFVLPIVSHLLQ---KNRSFYCL---------VVAPTRELSSQIAECF 89
Query: 249 SKLEPALGMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQV 308
+ + A G+ G+++ L R ++V TPG+I + R +R V
Sbjct: 90 NMFQ-ATGLRVCLLVGGANFNVQANQLSKRPHVVVGTPGRIAEHVLKTKSFRTER----V 144
Query: 309 KFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFCSATIPKEFQKTITRLFPTVGVIAS 368
+ V+DEAD ++ +VED + I ++ L +AT+ E K + ++
Sbjct: 145 RKFVLDEADRFFEQDFVEDLETIIPSLREKRQTLLFTATMSDEISKL------SSSILKR 198
Query: 369 PNLHKINHKNQIKLINADMAPYKGSKTK--ALAQILYSINRDNIDPGFEKRVVIFVNEKE 426
P + K + + + K K AL ++L + G V++FV+
Sbjct: 199 PKTIRTAEKYETVPALKEYYLFVAMKWKNSALVELL------EMSQGMS--VIVFVSMCV 250
Query: 427 NVPLVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMK 486
+++ LA + G AL G S E+R E ++
Sbjct: 251 TARVMSLALA-RLGFCSEALHGELSQEKREEAMR-------------------------- 283
Query: 487 IPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRV 546
+F ES VLV TD+ +RG++ V+ +D+P + D +HRV
Sbjct: 284 ----------------SFKESRFNVLVCTDLGSRGLDISHVDLVINFDVPKSGKDYIHRV 327
Query: 547 GRTGRMNQKGSVFII 561
GRT R + G+ +
Sbjct: 328 GRTARAGRSGTAITL 342
>CE09901 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 82.8 bits (203), Expect = 1e-15
Identities = 92/402 (22%), Positives = 159/402 (38%), Gaps = 95/402 (23%)
Query: 164 KPSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETL 223
KPS IQ A+ K + + A++G+GKT + I ++ L E
Sbjct: 48 KPSAIQQRAVPAILKA------RDVIAQAQSGTGKTATFSISVLQSLDTQVRET------ 95
Query: 224 KDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRIDIMV 283
+++IL PT EL Q+ + V L + + + G++ + L ++
Sbjct: 96 ------QALILSPTRELAVQIQKVVLALGDYMNVQCHACIGGTNLGEDIRKLDYGQHVVS 149
Query: 284 TTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLF 343
TPG++ M+ R + +K LV+DEAD +L+K + E Y +++ V+
Sbjct: 150 GTPGRVFD-----MIRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVVL 204
Query: 344 CSATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQIKLINADMAPYKGSKTKALAQILY 403
SAT+P E + +T F T + L+ D +G K Q
Sbjct: 205 LSATLPHEILE-MTSKFMTDPIRI--------------LVKRDELTLEGIK-----QFFV 244
Query: 404 SINR---------DNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSVEE 454
+++R D D + V+F N + V + K+ + V ++ G+ ++
Sbjct: 245 AVDREEWKFDTLIDLYDTLTITQAVLFCNTRRKVDWLTDKM-KEANFTVSSMHGDMEQKD 303
Query: 455 RLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVT 514
R E +K F T +VL++
Sbjct: 304 RDEVMKEFR------------------------------------------AGTTRVLIS 321
Query: 515 TDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKG 556
TDV ARG++ V+ YD+PN +HR+GR+GR +KG
Sbjct: 322 TDVWARGLDVPQVSLVINYDLPNNRELYIHRIGRSGRFGRKG 363
>7293369 [A] KOG0343 RNA Helicase
Length = 805
Score = 82.8 bits (203), Expect = 1e-15
Identities = 100/463 (21%), Positives = 186/463 (39%), Gaps = 72/463 (15%)
Query: 108 KRLVSKINDFSQLKILPEVRDKLMEVISSESLLNKNLLDVKYNPKENNVQEFKKHLKPSP 167
KR +IN E++D + ++ K + K K + P+
Sbjct: 38 KRPRQEINKSRLAATEAEIQDLKTKYAEIDATAIKKFAQFPLSKKTQKALAESKFVHPTQ 97
Query: 168 IQTTAIYQTSKTLMDPQLQVR--LIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETLKD 225
+Q +I P LQ + L AA TGSGKT+A+LIP++++L +
Sbjct: 98 VQRDSI--------GPALQGKDVLGAAITGSGKTLAFLIPVLEHLFMNKWSRTDG----- 144
Query: 226 KAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKG----FVEALKGRIDI 281
V +II+ PT EL Q+++T+ K +G H + + AG G F + +I
Sbjct: 145 ---VGAIIISPTRELAYQIFETLKK----VGKH-HDFSAGLIIGGKNLKFERTRMDQCNI 196
Query: 282 MVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHV 341
++ TPG++L M P S ++ LV+DEAD LD + + S I++ +
Sbjct: 197 LICTPGRLLQ----HMDENPLFNTSTMEMLVLDEADRCLDMGFQKTLNSIIENFPPVRQT 252
Query: 342 LFCSATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQIKLINADMAPYK---GSKTKAL 398
L SAT Q +L ++N K+ + + P + S K
Sbjct: 253 LLFSATQTNTVQ----------------DLARLNLKDPVYVGYGGATPREEPSASTKKTP 296
Query: 399 AQILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSVEERLEK 458
+ ++ P ++ + +N ++ + ++ + + N ++ + + L +
Sbjct: 297 NTAVLAV------PELLQQSYVVLNLEDKITMLWSFIKNHLKQKIIVFVASCKQAKYLYE 350
Query: 459 IKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVL 518
I + P + T+ + E+ F+ + V+ +TDV
Sbjct: 351 IFCKLRPGSPLLALYG---------TLHQDRRIAIYED-------FLRKSHVVMFSTDVA 394
Query: 519 ARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKGSVFII 561
+RG++F +VV D P +HR GR+ R +G ++
Sbjct: 395 SRGLDFPAVNWVVQLDCPEDVSQYIHRAGRSARNKTRGECLLV 437
>YKR059w [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 395
Score = 82.4 bits (202), Expect = 2e-15
Identities = 84/369 (22%), Positives = 148/369 (39%), Gaps = 74/369 (20%)
Query: 189 LIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTV 248
L A++G+GKT + I + + T ++ P ++++L PT EL Q+ + V
Sbjct: 63 LAQAQSGTGKTGTFSIAALQRID-TSVKAP-----------QALMLAPTRELALQIQKVV 110
Query: 249 SKLEPALGMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQV 308
L + + + G+S+ E L+ I+V TPG++ + R ++
Sbjct: 111 MALAFHMDIKVHACIGGTSFVEDAEGLRDA-QIVVGTPGRVFD-----NIQRRRFRTDKI 164
Query: 309 KFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFCSATIPKEFQKTITRLFPT-VGVIA 367
K ++DEAD +L + E Y + V+ SAT+P + + T+ V ++
Sbjct: 165 KMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILV 224
Query: 368 SPNLHKINHKNQIKLINADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIFVNEKEN 427
+ + Q +N + YK Y D D + VIF N +
Sbjct: 225 KKDELTLEGIKQF-YVNVEEEEYK-----------YECLTDLYDSISVTQAVIFCNTRRK 272
Query: 428 VPLVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKI 487
V + TKL N ++ + D P++ E MK
Sbjct: 273 VEELTTKLRN----------------DKFTVSAIYSDLPQQ-----------ERDTIMK- 304
Query: 488 PNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVG 547
F + ++L++TD+LARGI+ + V+ YD+P + +HR+G
Sbjct: 305 ---------------EFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIG 349
Query: 548 RTGRMNQKG 556
R GR +KG
Sbjct: 350 RGGRFGRKG 358
>YJL138c [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 395
Score = 82.4 bits (202), Expect = 2e-15
Identities = 84/369 (22%), Positives = 148/369 (39%), Gaps = 74/369 (20%)
Query: 189 LIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTV 248
L A++G+GKT + I + + T ++ P ++++L PT EL Q+ + V
Sbjct: 63 LAQAQSGTGKTGTFSIAALQRID-TSVKAP-----------QALMLAPTRELALQIQKVV 110
Query: 249 SKLEPALGMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQV 308
L + + + G+S+ E L+ I+V TPG++ + R ++
Sbjct: 111 MALAFHMDIKVHACIGGTSFVEDAEGLRDA-QIVVGTPGRVFD-----NIQRRRFRTDKI 164
Query: 309 KFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFCSATIPKEFQKTITRLFPT-VGVIA 367
K ++DEAD +L + E Y + V+ SAT+P + + T+ V ++
Sbjct: 165 KMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILV 224
Query: 368 SPNLHKINHKNQIKLINADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIFVNEKEN 427
+ + Q +N + YK Y D D + VIF N +
Sbjct: 225 KKDELTLEGIKQF-YVNVEEEEYK-----------YECLTDLYDSISVTQAVIFCNTRRK 272
Query: 428 VPLVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKI 487
V + TKL N ++ + D P++ E MK
Sbjct: 273 VEELTTKLRN----------------DKFTVSAIYSDLPQQ-----------ERDTIMK- 304
Query: 488 PNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVG 547
F + ++L++TD+LARGI+ + V+ YD+P + +HR+G
Sbjct: 305 ---------------EFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIG 349
Query: 548 RTGRMNQKG 556
R GR +KG
Sbjct: 350 RGGRFGRKG 358
>Hs7661920 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 411
Score = 82.4 bits (202), Expect = 2e-15
Identities = 91/397 (22%), Positives = 156/397 (38%), Gaps = 85/397 (21%)
Query: 164 KPSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETL 223
KPS IQ AI Q K + + +++G+GKT + I ++ L E
Sbjct: 60 KPSAIQQRAIKQIIKG------RDVIAQSQSGTGKTATFSISVLQCLDIQVRET------ 107
Query: 224 KDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRIDIMV 283
+++IL PT EL Q+ + + L + + + G++ + L ++
Sbjct: 108 ------QALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVA 161
Query: 284 TTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLF 343
TPG++ M+ R +K LV+DEAD +L+K + E Y +++ V+
Sbjct: 162 GTPGRVFD-----MIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVL 216
Query: 344 CSATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQIKLINADMAPYKGSKTKALA---- 399
SAT+P E + +T F T + L+ D +G K +A
Sbjct: 217 ISATLPHEILE-MTNKFMTDPIRI--------------LVKRDELTLEGIKQFFVAVERE 261
Query: 400 QILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSVEERLEKI 459
+ + D D + VIF N K V + K+ + V ++ G+ +ER +
Sbjct: 262 EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKM-REANFTVSSMHGDMPQKERESIM 320
Query: 460 KPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLA 519
K F +VL++TDV A
Sbjct: 321 KEFR------------------------------------------SGASRVLISTDVWA 338
Query: 520 RGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKG 556
RG++ ++ YD+PN +HR+GR+GR +KG
Sbjct: 339 RGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKG 375
>YJL033w [A] KOG0343 RNA Helicase
Length = 770
Score = 82.0 bits (201), Expect = 2e-15
Identities = 109/474 (22%), Positives = 194/474 (39%), Gaps = 92/474 (19%)
Query: 118 SQLKILPEVRDKLMEVISSESLLNKNLLDVKYNPKENNVQEFK---------KHLKPSPI 168
+Q K L + D+ +E + K +D +Y+PK + FK K L+ S
Sbjct: 10 TQRKTLRQKEDEYIENL-------KTKID-EYDPKITKAKFFKDLPISDPTLKGLRESSF 61
Query: 169 QTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAI 228
Q + Q L AA+TGSGKT+A+L+P+++ L R + W
Sbjct: 62 IKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVIEKLYREK-----WTEFDG--- 113
Query: 229 VRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKG----FVEALKGRIDIMVT 284
+ ++I+ PT EL Q+Y+ ++K +G HT + AG G F RI+I++
Sbjct: 114 LGALIISPTRELAMQIYEVLTK----IGSHT-SFSAGLVIGGKDVKFELERISRINILIG 168
Query: 285 TPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFC 344
TPG+IL + ++ S ++ LV+DEAD LD + + + + + L
Sbjct: 169 TPGRILQHLDQAV----GLNTSNLQMLVLDEADRCLDMGFKKTLDAIVSTLSPSRQTLLF 224
Query: 345 SATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQIKLINADMAPYKGSKTKALAQILYS 404
SAT ++ L + YK T + S
Sbjct: 225 SAT---------------------------QSQSVADLARLSLTDYKTVGTHDVMD--GS 255
Query: 405 INRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDS----VEERLEKIK 460
+N++ P ++ I V + + ++ + + + ++ + V E K++
Sbjct: 256 VNKEASTPETLQQFYIEVPLADKLDILFSFIKSHLKCKMIVFLSSSKQVHFVYETFRKMQ 315
Query: 461 PFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLAR 520
P + + R+ ++ TE + F + L TDV+AR
Sbjct: 316 PGIS-LMHLHGRQKQRARTETL-------------------DKFNRAQQVCLFATDVVAR 355
Query: 521 GINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKG-SVFIITGKRVKNWVKAI 573
GI+F +VV D P +HRVGR R +KG S+ ++T + + ++K +
Sbjct: 356 GIDFPAVDWVVQVDCPEDVDTYIHRVGRCARYGKKGKSLIMLTPQEQEAFLKRL 409
>YDR194c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 664
Score = 82.0 bits (201), Expect = 2e-15
Identities = 105/481 (21%), Positives = 206/481 (41%), Gaps = 80/481 (16%)
Query: 117 FSQLKILPEVRDKLMEVISSESLLNKNLLDVKYNPKENNVQEFKKHLKPSPIQTTAIYQT 176
FS+L +P+ D EV + +SLL + +LD + + K EF P T +T
Sbjct: 87 FSKLIHVPK-EDNSKEV-TLDSLLEEGVLDKEIH-KAITRMEF-------PGLTPVQQKT 136
Query: 177 SKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLP 236
K ++ + + A+TG+GKT A+LIP+ +L T+ ++ + +V+++I+ P
Sbjct: 137 IKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDS--------QYMVKAVIVAP 188
Query: 237 THELVEQVYQTVSKL-EPALGMHTY---KWDAGSSYKGFVEAL-KGRIDIMVTTPGKILS 291
T +L Q+ V K+ + G+ Y G+ ++ + + K R +I++ TPG+++
Sbjct: 189 TRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLID 248
Query: 292 LFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVED--------SYSTIKHMQNLNHVLF 343
+ + ++ V + V+DEAD LL+ + +D + K N+ +LF
Sbjct: 249 V----LEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLF 304
Query: 344 CSATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQIKLINADMAPYKGSKTKALAQILY 403
SAT+ + QK + + + K N + I+ + + A + +
Sbjct: 305 -SATLDDKVQKLANNIMNKKECLFLDTVDK-NEPEAHERIDQSVVISEKFANSIFAAVEH 362
Query: 404 SINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSVEERLEKIKPFM 463
I + + + +IF + + + L N++ D+ P +
Sbjct: 363 -IKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDL-----------------PIL 404
Query: 464 DPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGIN 523
+ K+T K + + F + +LV TDV ARG++
Sbjct: 405 EFHGKITQNKRTSLV-----------------------KRFKKDESGILVCTDVGARGMD 441
Query: 524 FRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKGSVFIITGKRVKNWVKAIPSIVSKNVSI 583
F V+ +P+ + +HR+GRT R ++GS + K +V+ + +KN+ I
Sbjct: 442 FPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELED--AKNIVI 499
Query: 584 S 584
+
Sbjct: 500 A 500
>YDL160c [A] KOG0326 ATP-dependent RNA helicase
Length = 506
Score = 82.0 bits (201), Expect = 2e-15
Identities = 98/403 (24%), Positives = 156/403 (38%), Gaps = 99/403 (24%)
Query: 164 KPSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETL 223
KPSPIQ AI + T D L A+ G+GKT A++IP ++ +K +
Sbjct: 68 KPSPIQEEAI-PVAITGRDI-----LARAKNGTGKTAAFVIPTLEKVKPKLNK------- 114
Query: 224 KDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRIDIMV 283
++++I++PT EL Q Q V L G+ G++ + + L + I+V
Sbjct: 115 -----IQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILV 169
Query: 284 TTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLF 343
TPG++L L + + + LS +MDEAD +L + + + + + L
Sbjct: 170 GTPGRVLDLASRKVAD-----LSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLL 224
Query: 344 CSATIPKEFQKTITRLFPTVGVIASPNLHK---INHKNQIKL--INADMAPYKGSKTKAL 398
SAT P TV +LHK IN ++ L I A + +
Sbjct: 225 FSATFPL-----------TVKEFMVKHLHKPYEINLMEELTLKGITQYYAFVEERQKLHC 273
Query: 399 AQILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLAN-----QYGHDVVALTGNDSVE 453
L+S + N + +IF N V L+A K+ + Y H
Sbjct: 274 LNTLFSKLQIN-------QAIIFCNSTNRVELLAKKITDLGYSCYYSH------------ 314
Query: 454 ERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLV 513
MK N V E F + ++ LV
Sbjct: 315 -----------------------------ARMKQQERNKVFHE-------FRQGKVRTLV 338
Query: 514 TTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKG 556
+D+L RGI+ + V+ +D P T +HR+GR+GR G
Sbjct: 339 CSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLG 381
>SPBC691.04 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 535
Score = 82.0 bits (201), Expect = 2e-15
Identities = 98/418 (23%), Positives = 166/418 (39%), Gaps = 66/418 (15%)
Query: 171 TAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYL-IPLVDYLKRTEMENPSWETLKDKAIV 229
T + Q + P + ++ A+TG+GKT+A+L + D LK N S +
Sbjct: 62 TPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSK--------I 113
Query: 230 RSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEAL-KGRIDIMVTTPGK 288
S+IL PT EL Q+++ KL G+ G+S A+ +G ++++ TPG+
Sbjct: 114 HSVILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGR 173
Query: 289 ILSLFNISMVNRPDRILSQVK--FLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFC-S 345
+ + RIL + ++DEAD L+D + E + + + C S
Sbjct: 174 LEDHL------QNPRILESLSTDSFILDEADRLMDMGFAESILNIHEAVTTTKTRKLCFS 227
Query: 346 ATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQIKLINADMAPYKGSKTKALAQILYSI 405
AT+P + + T KLIN
Sbjct: 228 ATMPPKVSNVFRGILGT----------------DFKLINC-------------------- 251
Query: 406 NRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDP 465
D +P +RV FV + TKL + + L S +I F+ P
Sbjct: 252 -LDPNEPPTHERVPQFV--------IETKLDKVFSSSLSLLQQLTS-SNPSSRIIVFL-P 300
Query: 466 PKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFR 525
M + + I +S + + E+F + +L TDV+ARG++F
Sbjct: 301 TISMVDFVGGVLENHLKIPCFILHSGLTTAQRRSITESFRKCQSGILFATDVVARGMDFP 360
Query: 526 GCRYVVLYDIPNTPVDLVHRVGRTGRMNQKGSVFIITGKRVKNWVKAIPSIVSKNVSI 583
VV P+ D +HR+GRTGR + G ++I ++ K ++ +I + K +I
Sbjct: 361 NITQVVQITGPSNTDDYIHRIGRTGRAGKTGEAYLILLEQEKPFLNSIKHLPLKRATI 418
>Hs10346129 [A] KOG0336 ATP-dependent RNA helicase
Length = 648
Score = 82.0 bits (201), Expect = 2e-15
Identities = 97/397 (24%), Positives = 168/397 (41%), Gaps = 79/397 (19%)
Query: 164 KPSPIQTTAIYQTSKTLMDPQLQ-VRLIA-AETGSGKTMAYLIPLVDYLKRTEMENPSWE 221
KP+PIQ+ A LQ + LI A+TG+GKT+ YL+P +L + PS +
Sbjct: 264 KPTPIQSQA--------WPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHL----VLQPSLK 311
Query: 222 TLKDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRIDI 281
+++ + ++L PT EL QV K G+ + G + +E LK +DI
Sbjct: 312 GQRNRPGM--LVLTPTRELALQVEGECCKYSYK-GLRSVCVYGGGNRDEQIEELKKGVDI 368
Query: 282 MVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHV 341
++ TPG++ L + VN L + +LV+DEAD +LD + + ++
Sbjct: 369 IIATPGRLNDLQMSNFVN-----LKNITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQT 423
Query: 342 LFCSATIPKEFQKTITRLF--PTVGVIASPNLHKINHKNQIKLINADMAPYKGSKTKALA 399
+ SAT P + P + + + +L ++ Q ++ + K S +
Sbjct: 424 VMTSATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTE--EEKWSHMQTFL 481
Query: 400 QILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSVEERLEKI 459
Q + S + +V++FV+ K +A+ D++ GN SVE L
Sbjct: 482 QSMSSTD----------KVIVFVSRK--------AVADHLSSDLI--LGNISVES-LHGD 520
Query: 460 KPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLA 519
+ D K + K+ KV ++L+ TD+ +
Sbjct: 521 REQRDREKALENFKTGKV--------------------------------RILIATDLAS 548
Query: 520 RGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKG 556
RG++ +V +D P + VHR+GRTGR + G
Sbjct: 549 RGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTG 585
>YDR021w [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 81.6 bits (200), Expect = 3e-15
Identities = 96/398 (24%), Positives = 169/398 (42%), Gaps = 86/398 (21%)
Query: 165 PSPIQTTAIYQ--TSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRTEMENPSWET 222
PS IQ+ AI Q + K + + A++G+GKT + I L+ + + +
Sbjct: 46 PSSIQSRAITQIISGKDV--------IAQAQSGTGKTATFTIGLLQAIDLRKKD------ 91
Query: 223 LKDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEAL-KGRIDI 281
++++IL PT EL Q+ Q V L + ++ + G + K ++ + K
Sbjct: 92 ------LQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQA 145
Query: 282 MVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKS--WVEDSYSTIKHMQNLN 339
+ TPG++L + M+ + V+ LV+DEAD LL ++ + + Y +
Sbjct: 146 VSGTPGRVLDMIKKQMLQTRN-----VQMLVLDEADELLSETLGFKQQIYDIFAKLPKNC 200
Query: 340 HVLFCSATIPKEFQKTITRLFPTVGVIASPNLHKINHKN-QIKLINADMAPYKGSKTKAL 398
V+ SAT+ K+ + +TR F V +I+ + + ++N D +K
Sbjct: 201 QVVVVSATMNKDILE-VTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWK------- 252
Query: 399 AQILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSVEERLEK 458
+ D D + VIF N K+ V ++ +L Q VV++ G+ EER
Sbjct: 253 ----FDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLI-QSNFAVVSMHGDMKQEER--- 304
Query: 459 IKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVL 518
+KV + F +VL++TDV
Sbjct: 305 ----------------DKVMND-----------------------FRTGHSRVLISTDVW 325
Query: 519 ARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKG 556
ARGI+ + V+ YD+P + +HR+GR+GR +KG
Sbjct: 326 ARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKG 363
>At3g61240 [A] KOG0326 ATP-dependent RNA helicase
Length = 498
Score = 81.6 bits (200), Expect = 3e-15
Identities = 94/397 (23%), Positives = 150/397 (37%), Gaps = 87/397 (21%)
Query: 164 KPSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETL 223
KPSPIQ +I L + R A+ G+GKT A+ IP+++ +
Sbjct: 146 KPSPIQEESI---PIALTGSDILAR---AKNGTGKTGAFCIPVLEKID------------ 187
Query: 224 KDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRIDIMV 283
+ +++++IL+PT EL Q Q +L L + G+S + + L + ++V
Sbjct: 188 PNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLV 247
Query: 284 TTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLF 343
TPG+IL L + +L LVMDEAD LL + I+ + L
Sbjct: 248 GTPGRILDLTKKGVC-----VLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLM 302
Query: 344 CSATIPKEFQKTITRLFPTVGVIASPNLHK---INHKNQIKLINADMAPYKGSKTKALAQ 400
SAT P TV +L K IN +Q+ L+
Sbjct: 303 FSATFP-----------VTVKAFKDRHLRKPYVINLMDQLTLMGV--------------- 336
Query: 401 ILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLAN-QYGHDVVALTGNDSVEERLEKI 459
+ FV E++ V + T + Q ++ + VE +KI
Sbjct: 337 ---------------TQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKI 381
Query: 460 KPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLA 519
TE + ++ +V + F + LV TD+
Sbjct: 382 -------------------TELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLFT 422
Query: 520 RGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKG 556
RGI+ + V+ +D P T +HRVGR+GR G
Sbjct: 423 RGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLG 459
>7295505 [A] KOG0346 RNA helicase
Length = 560
Score = 81.6 bits (200), Expect = 3e-15
Identities = 105/409 (25%), Positives = 166/409 (39%), Gaps = 70/409 (17%)
Query: 164 KPSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETL 223
+P+ IQ+TAI L++ + V + A TGSGKT Y +PL+ + +++
Sbjct: 31 QPTLIQSTAI----PLLLEGKDVV--VRARTGSGKTATYALPLIQKILNSKLN------- 77
Query: 224 KDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFV---EALKGRID 280
+ V +++L PT +L Q + + +L + G D S V AL D
Sbjct: 78 ASEQYVSAVVLAPTKKLCRQSRKVIEQLVESCGKVVRVADIADSSNDTVTQRHALSESPD 137
Query: 281 IMVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNH 340
I+V TP +L+ V L V+ LV+DEAD + + +D IKH+ +
Sbjct: 138 IVVATPANLLAYAEAGSVVD----LKHVETLVVDEADLVFAYGYEKDFKRLIKHLPPIYQ 193
Query: 341 VLFCSATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQIKLINADMAPY-KGSKTKALA 399
+ SAT+ T V+ L +N+ +KL ++ P + S + LA
Sbjct: 194 AVLVSATL-------------TDDVVRMKGL-CLNNPVTLKLEEPELVPQDQLSHQRILA 239
Query: 400 Q------ILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSVE 453
+ ILY++ + + G + +IFVN + V L Q+G L
Sbjct: 240 EENDKPAILYALLKLRLIRG---KSIIFVNSIDRCYKVRLFL-EQFGIRACVLNSELPAN 295
Query: 454 ERLEKIKPF----MDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTL 509
R+ I F D EK ++ K P S D E+
Sbjct: 296 IRIHTISQFNKGTYDIIIASDEHHMEKPGGKSATNRKSPRSG--------DMESSA---- 343
Query: 510 KVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKGSV 558
+RGI+F+ V+ +D P +HR GRT R N KGSV
Sbjct: 344 ---------SRGIDFQCVNNVINFDFPRDVTSYIHRAGRTARGNNKGSV 383
>SPAC1F7.02c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 578
Score = 81.3 bits (199), Expect = 4e-15
Identities = 96/400 (24%), Positives = 168/400 (42%), Gaps = 73/400 (18%)
Query: 157 QEFKKHLKPSPIQTTAIYQTSKTLMDPQLQVR--LIAAETGSGKTMAYLIPLVDYLKRTE 214
+ +K +K +T Q K + P L R L AA+TGSGKT+A+LIP ++ L +
Sbjct: 98 ENIQKAIKEMGFETMTEIQ--KRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEMLYALK 155
Query: 215 MENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWD---AGSSYKGF 271
K + II+ PT EL Q++ +L L H + G++ +
Sbjct: 156 F--------KPRNGTGVIIISPTRELALQIFGVAKEL---LKYHHQTFGIVIGGANRRAE 204
Query: 272 VEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYST 331
+ L ++++V TPG++L + N + ++ LV+DEAD +L+ + ++
Sbjct: 205 ADKLVKGVNLLVATPGRLLD----HLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQI 260
Query: 332 IKHMQNLNHVLFCSATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQIKLINADMAPYK 391
+K +P E ++T+ LF +L +I+ K +N D
Sbjct: 261 MK-------------ILPSENRQTL--LFSATQTTKVEDLARISLKPGPLYVNVD----S 301
Query: 392 GSKTKALAQILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDS 451
G T + G E+ V+ ++K + L + N +V ++ S
Sbjct: 302 GKPTSTVE-------------GLEQGYVVVDSDKRFLLLFSFLKRNLKKKVIVFMSSCAS 348
Query: 452 VEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKV 511
V+ E + ++D P K ++ NT F + +
Sbjct: 349 VKYMAELLN-YIDLPVLDLHGKQKQQRRTNTFF------------------EFCNAEKGI 389
Query: 512 LVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGR 551
L+ T+V ARG++ ++V YD P+ P D +HRVGRT R
Sbjct: 390 LLCTNVAARGLDIPAVDWIVQYDPPDDPRDYIHRVGRTAR 429
>CE00839 [A] KOG0326 ATP-dependent RNA helicase
Length = 430
Score = 81.3 bits (199), Expect = 4e-15
Identities = 90/394 (22%), Positives = 151/394 (37%), Gaps = 81/394 (20%)
Query: 164 KPSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETL 223
KPSPIQ +I L + R A+ G+GKT AY IP+++ ++ L
Sbjct: 65 KPSPIQEASI---GVALTGQDILAR---AKNGTGKTGAYCIPVIEKIQ---------PAL 109
Query: 224 KDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRIDIMV 283
K +++++++PT EL Q Q +L + + G+ + + L G + +++
Sbjct: 110 K---AIQAMVIVPTRELALQTSQICVELSKHIQLKVMVTTGGTDLRDDIMRLNGTVHLVI 166
Query: 284 TTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLF 343
TPG+IL L + + K LV+DEAD LL + + I + V+
Sbjct: 167 ATPGRILDLMEKGVAK-----MEHCKTLVLDEADKLLSQDFQGILDRLINFLPKERQVML 221
Query: 344 CSATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQIKLINADMAPYKGSKTKALAQILY 403
SAT P TV ++HK PY+ + + L +
Sbjct: 222 YSATFPN-----------TVTSFMQKHMHK---------------PYEINLMEELTLLGV 255
Query: 404 SINRDNIDPGFEKRVVIFVNEKENVPLVATKLAN-QYGHDVVALTGNDSVEERLEKIKPF 462
+ + FV EK+ V + T Q ++ VE +KI
Sbjct: 256 T------------QYYAFVQEKQKVHCLNTLFRKLQINQSIIFCNSTQRVELLAKKI--- 300
Query: 463 MDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGI 522
TE + +S + F + + LV +D+L RGI
Sbjct: 301 ----------------TEIGYSCYYIHSKMAQNHRNRVFHDFRQGNCRNLVCSDLLTRGI 344
Query: 523 NFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKG 556
+ + V+ +D P +HR+GR+GR G
Sbjct: 345 DIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLG 378
>CE28485 [K] KOG4284 DEAD box protein
Length = 963
Score = 80.5 bits (197), Expect = 7e-15
Identities = 88/412 (21%), Positives = 159/412 (38%), Gaps = 94/412 (22%)
Query: 189 LIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTV 248
L+ A++G+GKT+ + + V+ L ++ +I+ PT E+ Q+ +TV
Sbjct: 53 LVQAKSGTGKTLVFSVLAVENLDSRSSH------------IQKVIVTPTREISVQIKETV 100
Query: 249 SKLEPALGMHTYKWDAGSSYK-GFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQ 307
K+ P G T + GS++K ++ + R I++ TPG+I L + +N +S
Sbjct: 101 RKVAPT-GARTSVYVGGSAHKLNLIDLKQTRPQIVIGTPGRIAQLVKLGAMN-----MSH 154
Query: 308 VKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFCSATIPKEFQKTITRLFPTVGVIA 367
V F V+DEAD L+D+ + +D I + + V SAT P+ ++ ++
Sbjct: 155 VDFFVLDEADKLMDEVFRDDINIIINSLPQIRQVAVFSATYPRNLDNLLSTFLRDAALVR 214
Query: 368 SPNLHKINHKNQIKLINADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIFVNEKEN 427
N + + + A +P T L I Y + ++F ++
Sbjct: 215 F-NADDVQLFGIKQYVVAKCSPMLEKLTHVLKSIRY------------VQALVFCDQISK 261
Query: 428 VPLVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKI 487
+AT L + G DV ++ S ++R
Sbjct: 262 CEPIATHLKSS-GLDVTFVSSAMSQKDR-------------------------------- 288
Query: 488 PNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVG 547
+ ++++ +K+LV++D+ ARGI+ VV D HR+G
Sbjct: 289 ---QLAVDQLR-------AKRVKILVSSDLTARGIDADNVNLVVNIDAAANEETYFHRIG 338
Query: 548 RTGRMNQKGSVFI-------------------ITGKRVKNWVKAIPSIVSKN 580
R R G+ +T KRV V +P + KN
Sbjct: 339 RAARFGAHGAAVTLLEDERALKGFTALAYRGKVTVKRVVEGVHELPGDLVKN 390
>7298989 [A] KOG0336 ATP-dependent RNA helicase
Length = 703
Score = 80.5 bits (197), Expect = 7e-15
Identities = 92/399 (23%), Positives = 165/399 (41%), Gaps = 80/399 (20%)
Query: 164 KPSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETL 223
KPSPIQ+ Q L+ + + A+TG+GKT+A+L+P + TE ++ T
Sbjct: 305 KPSPIQS----QAWPILLQGHDMIGI--AQTGTGKTLAFLLP---GMIHTEYQSTPRGT- 354
Query: 224 KDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRIDIMV 283
+ ++L PT EL Q+ V K GM G + + L+ +I++
Sbjct: 355 --RGGANVLVLAPTRELALQIEMEVKKYS-FRGMKAVCVYGGGNRNMQISDLERGAEIII 411
Query: 284 TTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLF 343
TPG++ L ++++ +S + +LV+DEAD +LD + + ++ +
Sbjct: 412 CTPGRLNDLIMANVID-----VSTITYLVLDEADRMLDMGFEPQIRKVMLDIRPDRQTIM 466
Query: 344 CSATIPKEFQKTITRLFPT-----VGVIASPNLHKINHKNQIKLINADMAPYKGSKTKAL 398
SAT P ++ VG + H + K IKL+ DM K +
Sbjct: 467 TSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHSV--KQIIKLMEDDM-----DKFNTI 519
Query: 399 AQILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSVEERLEK 458
+ +++ + +++IF K ++++L G + GN
Sbjct: 520 TSFVKNMSSTD-------KIIIFCGRKVRADDLSSELTLD-GFMTQCIHGN--------- 562
Query: 459 IKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVL 518
+ MD + + KS +++LV TDV
Sbjct: 563 -RDQMDREQAIADIKS--------------------------------GVVRILVATDVA 589
Query: 519 ARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKGS 557
+RG++ +V+ YD P+ + VHRVGRTGR ++G+
Sbjct: 590 SRGLDIEDITHVINYDFPHNIEEYVHRVGRTGRAGRQGT 628
>At3g22330 [A] KOG0331 ATP-dependent RNA helicase
Length = 620
Score = 80.1 bits (196), Expect = 9e-15
Identities = 94/417 (22%), Positives = 172/417 (40%), Gaps = 96/417 (23%)
Query: 173 IYQTSKTLMDPQLQVR--LIAAETGSGKTMAYLIPLVDYL-----KRTEMENPSWETLKD 225
++ K +++P ++ R + A TG+GKT+A+ IP++D + K NP
Sbjct: 127 LFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPL------ 180
Query: 226 KAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRIDIMVTT 285
++L PT EL QV + + P+L T G+ + L +D+ V T
Sbjct: 181 -----CLVLAPTRELARQVEKEFRESAPSLD--TICLYGGTPIGQQMRQLDYGVDVAVGT 233
Query: 286 PGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFCS 345
PG+++ L +N LS+V+F+V+DEAD +L + ED ++ + + S
Sbjct: 234 PGRVIDLMKRGALN-----LSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFS 288
Query: 346 ATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQIKLI-NADMAPYKGSKTKAL------ 398
AT+P + +++T+ + +N+ + L+ ++D G T ++
Sbjct: 289 ATMP-SWIRSLTKKY-------------LNNPLTVDLVGDSDQKLADGITTYSIIADSYG 334
Query: 399 -AQILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSVEERLE 457
A I+ + ++ G + ++F K + ++ LA + + AL G+ S +R
Sbjct: 335 RASIIGPLVTEHAKGG---KCIVFTQTKRDADRLSYALARSFKCE--ALHGDISQSQRER 389
Query: 458 KIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIE-EIPEDNEAFVESTLKVLVTTD 516
+ F D + T + +PN +++I E+P + E F
Sbjct: 390 TLAGFRDGHFNILV-----ATDVAARGLDVPNVDLIIHYELPNNTETF------------ 432
Query: 517 VLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKGSVFIITGKRVKNWVKAI 573
VHR GRTGR +KGS +I + VK I
Sbjct: 433 --------------------------VHRTGRTGRAGKKGSAILIYSQDQSRAVKII 463
>SPCC1494.06c [A] KOG0346 RNA helicase
Length = 595
Score = 79.7 bits (195), Expect = 1e-14
Identities = 93/395 (23%), Positives = 165/395 (41%), Gaps = 56/395 (14%)
Query: 192 AETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSKL 251
A TGSGKT AYLIP+++ L + + + +++ + +++L+PT EL +QVY + KL
Sbjct: 58 ARTGSGKTAAYLIPILELLLKQKQID------ENQRGIFALLLVPTRELAQQVYNVLEKL 111
Query: 252 EPALGMHTYKWDAGSSYKGFVE--ALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQVK 309
H + ++ V+ L DI++ TP + + +++ P L ++K
Sbjct: 112 TAFCSKHIRFINVATNSSDTVQRPLLLDLPDIVIATPSR--CVVHVASGVLP---LDKLK 166
Query: 310 FLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFCSATIPK---EFQKTITRLFPTVGVI 366
FLV+DEAD +L + ED + + + SAT+ K QK + R
Sbjct: 167 FLVIDEADLMLSFGYNEDMKTLSRSLPRGTQSFLMSATLSKNIASLQKLVCR-------- 218
Query: 367 ASPNLHKINHKNQIKLINADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIFVNEKE 426
+P + + K + + LA IL + + +++IFVNE
Sbjct: 219 -NPFILAVKDKEASGKLTQYVVKCSEQDKFLLAYILLKLRL------IKGKILIFVNEIN 271
Query: 427 NVPLVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEK------VTTE 480
+ L Q+G + L V RL ++ + ++ E E
Sbjct: 272 RCYRLKLFL-EQFGLKSLVLNSELPVNSRLHILEQYNKGLYQIIIATDESGMMGEIEELE 330
Query: 481 NTVTM----KIPNSNIVIEEIPEDNEAFV-----------ESTLKVLVTTDV---LARGI 522
N V I ++++ + A V +S K V D +ARG+
Sbjct: 331 NNVDFVEEEVISTDQPTLDKMKDQENADVNDESILAAAKDKSKKKKRVKQDKEYGVARGL 390
Query: 523 NFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKGS 557
+F V+ +D+P+ +HR+GRT R + G+
Sbjct: 391 DFENVACVLNFDMPSNTKSYIHRIGRTARAGKPGT 425
>At3g18600 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 568
Score = 79.7 bits (195), Expect = 1e-14
Identities = 86/373 (23%), Positives = 156/373 (41%), Gaps = 68/373 (18%)
Query: 191 AAETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSK 250
AA TGSGKT+A+LIP V+ L + E + I++ PT EL Q +
Sbjct: 132 AARTGSGKTLAFLIPAVELLFK--------ERFSPRNGTGVIVICPTRELAIQTKNVAEE 183
Query: 251 LEPALGMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQVKF 310
L G++ + + + ++++ TPG++L + N I +K
Sbjct: 184 LLKHHSQTVSMVIGGNNRRSEAQRIASGSNLVIATPGRLLD----HLQNTKAFIYKHLKC 239
Query: 311 LVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFCSATIPKEFQKTITRLFPTVGVIASPN 370
LV+DEAD +L++++ ED +K + SAT + K + R+ + SP
Sbjct: 240 LVIDEADRILEENFEEDMNKILKILPKTRQTALFSATQTSKV-KDLARV-----SLTSP- 292
Query: 371 LHKINHKNQIKLINADMAP-YKGSKTKALAQILYSINRDNIDPGFEKRVVIFVNEKENVP 429
+H + K+ N + Y +K +L S + N++ K++++F + ++V
Sbjct: 293 VHVDVDDGRRKVTNEGLEQGYCVVPSKQRLILLISFLKKNLN----KKIMVFFSTCKSVQ 348
Query: 430 LVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPN 489
T++ DV + G ++ + K F D
Sbjct: 349 F-HTEIMKISDVDVSDIHGG---MDQNRRTKTFFD------------------------- 379
Query: 490 SNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRT 549
F+++ +L+ TDV ARG++ +++ YD P+ P + +HRVGRT
Sbjct: 380 --------------FMKAKKGILLCTDVAARGLDIPSVDWIIQYDPPDKPTEYIHRVGRT 425
Query: 550 GR-MNQKGSVFII 561
R KG ++
Sbjct: 426 ARGEGAKGKALLV 438
>SPCC1795.11 [A] KOG0335 ATP-dependent RNA helicase
Length = 636
Score = 79.3 bits (194), Expect = 1e-14
Identities = 89/431 (20%), Positives = 165/431 (37%), Gaps = 81/431 (18%)
Query: 162 HLKPSPIQTTAI--YQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYL-----KRTE 214
+ +P+P+Q +I + + LM A+TGSGKT +L P++
Sbjct: 189 YTQPTPVQKNSIPIVTSGRDLM--------ACAQTGSGKTAGFLFPILSLAFDKGPAAVP 240
Query: 215 MENPSWETLKD-KAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVE 273
++ + + KA ++IL PT ELV Q+++ K + G+ + +
Sbjct: 241 VDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIR 300
Query: 274 ALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIK 333
+ D++ TPG+++ L + ++ L+ +KFLV+DEAD +LD + E I
Sbjct: 301 QIDQGCDLLSATPGRLVDLIDRGRIS-----LANIKFLVLDEADRMLDMGF-EPQIRHIV 354
Query: 334 HMQNLNHV-----LFCSATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQIKLINADMA 388
++ V L SAT P++ Q ++ + + K+++ +
Sbjct: 355 EGADMTSVEERQTLMFSATFPRDIQLLARDFLKDYVFLSVGRVGSTSENITQKVVHVE-- 412
Query: 389 PYKGSKTKALAQILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTG 448
K L IL+++ + + +IFV K + L N ++ G
Sbjct: 413 --DSEKRSYLLDILHTLPPEGL-------TLIFVETKRMADTLTDYLLNS-NFPATSIHG 462
Query: 449 NDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVEST 508
+ + ER + E F
Sbjct: 463 DRTQRERERAL------------------------------------------ELFRSGR 480
Query: 509 LKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKGSVFIITGKRVKN 568
++V T V +RG++ +V+ YD+P D VHR+GRTGR G + K
Sbjct: 481 TSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGQAVAFFNRNNKG 540
Query: 569 WVKAIPSIVSK 579
K + ++ +
Sbjct: 541 IAKELIELLQE 551
>CE03821 [A] KOG0345 ATP-dependent RNA helicase
Length = 578
Score = 79.0 bits (193), Expect = 2e-14
Identities = 86/383 (22%), Positives = 160/383 (41%), Gaps = 80/383 (20%)
Query: 189 LIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTV 248
++ + TGSGKT+A+++P++ ++ +++ A + ++IL P+ EL Q+ +
Sbjct: 50 VVESPTGSGKTLAFVLPMMRMIQNAKLQ---------PADIGALILSPSRELCSQIVSVI 100
Query: 249 SKLEPALGMHTYKWDAGSSYKGFVEALKGR-IDIMVTTPGKILSLF--NISMVNRPDRIL 305
L + G ++ K + ++I+V TPG++ + +++ R R L
Sbjct: 101 QPFAEKLNLTVETVTGGQKVDKNIKMFKNKNVNILVATPGRLFQIIQHEKTLIARKMRTL 160
Query: 306 SQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFCSATIPKEFQKTITRLFPTVGV 365
+ LV+DEA D ++ I+ ++ +L C IPK+ + T LF V
Sbjct: 161 ---QLLVIDEA----------DRFNEIQFEDHMREILSC---IPKQRR---TGLFSATQV 201
Query: 366 IASPNLHKINHKN--QIKLI----NADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVV 419
+L +N Q+K+ +A + K + A S+ + I +K+++
Sbjct: 202 KEEDDLMVFGLRNAKQVKVAQERNSAAPSTLKNYYVECRADEKTSVCLEFIRQRTDKKIL 261
Query: 420 IFVNEKENVPLVATKLANQYG-HDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVT 478
IF +V G + A+ G S R +IK
Sbjct: 262 IFFPSCNSVRYFYKIFERCLGKRPLFAVHGKCSNPHRASQIK------------------ 303
Query: 479 TENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNT 538
AF +ST V+++TDV+ARGI+ +V+ +D+P
Sbjct: 304 ------------------------AFSDSTNGVMISTDVMARGIDISDIDWVIQFDLPKH 339
Query: 539 PVDLVHRVGRTGRMNQKGSVFII 561
VHR GRT R ++G+ I+
Sbjct: 340 SSWFVHRAGRTARCGREGNALIL 362
>At1g51380 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 392
Score = 79.0 bits (193), Expect = 2e-14
Identities = 91/397 (22%), Positives = 162/397 (39%), Gaps = 85/397 (21%)
Query: 164 KPSPIQTTAIYQTSKTLMDPQLQVR--LIAAETGSGKTMAYLIPLVDYLKRTEMENPSWE 221
KPS IQ A+ P L+ R + A++G+GKT I + + + +
Sbjct: 44 KPSEIQQRALV--------PILKGRDVIAQAQSGTGKTSMIAISVCQIVNISSRK----- 90
Query: 222 TLKDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRIDI 281
V+ ++L P+ EL Q +T+ + + + G S ++ L+ +
Sbjct: 91 -------VQVLVLSPSRELASQTEKTIQAIGAHTNIQAHACIGGKSIGEDIKKLERGVHA 143
Query: 282 MVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHV 341
+ TPG++ M+ R VK LV+DE+D +L K + Y + + + V
Sbjct: 144 VSGTPGRVYD-----MIKRGSLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRALPHDIQV 198
Query: 342 LFCSATIPKEFQKTITRLFPT--VGVIASPNLHKINHKNQIKLINADMAPYKGSKTKALA 399
SAT+P+E + +T F T V ++ P+ + Q ++ D +K L
Sbjct: 199 CLISATLPQEILE-MTEKFMTDPVRILVKPDELTLEGIKQY-YVDVDKEEWKFDTLCDLY 256
Query: 400 QILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSVEERLEKI 459
L +IN + +IF N ++ V + K+ + V ++ G+ +ER
Sbjct: 257 GRL-TIN----------QAIIFCNTRQKVDWLTEKMRSS-NFIVSSMHGDKRQKER---- 300
Query: 460 KPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLA 519
++I +F +VL+ +DV A
Sbjct: 301 -----------------------------------DDIMNQFRSFKS---RVLIASDVWA 322
Query: 520 RGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKG 556
RGI+ + +V+ YDIPN P +HR+GR GR ++G
Sbjct: 323 RGIDVQTVSHVINYDIPNNPELYIHRIGRAGRFGREG 359
>YKR024c [A] KOG0348 ATP-dependent RNA helicase
Length = 742
Score = 78.6 bits (192), Expect = 2e-14
Identities = 105/428 (24%), Positives = 181/428 (41%), Gaps = 43/428 (10%)
Query: 164 KPSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETL 223
KP+ IQ AI Q I A+TGSGKT++YL+P++ + + +T
Sbjct: 166 KPTSIQKQAIPQIIGNAGKNDF---FIHAQTGSGKTLSYLLPIISTIL-------NMDTH 215
Query: 224 KDKAI-VRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEA-LKGRIDI 281
D+ ++++ PT EL Q+Y S L G K +A L+ +
Sbjct: 216 VDRTSGAFALVIAPTRELASQIYHVCSTLVSCCHYLVPCLLIGGERKKSEKARLRKGCNF 275
Query: 282 MVTTPGKILS-LFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQN--- 337
++ TPG++L L N ++ +++ ++++V+DE D L++ + E IK + +
Sbjct: 276 IIGTPGRVLDHLQNTKVIK--EQLSQSLRYIVLDEGDKLMELGFDETISEIIKIVHDIPI 333
Query: 338 -------LNHVL---FCSATIP---KEFQKTITRLFPTVGVIASPNLHKINHKNQIKLIN 384
L H L CSAT+ + + + + + + L
Sbjct: 334 NSEKFPKLPHKLVHMLCSATLTDGVNRLRNVALKDYKLISNGTKKDSDIVTVAPDQLLQR 393
Query: 385 ADMAPYKGSKTKALAQILYSINRDNIDPGFEK---RVVIFVNEKENVPLVATKLANQYGH 441
+ P K + LA L +I +D I G + R ++FV+ ++V + GH
Sbjct: 394 ITIVPPK-LRLVTLAATLNNITKDFIASGQQSKTLRTIVFVSCSDSVEFHYDAFSGSDGH 452
Query: 442 DVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDN 501
LTG DSV + F P +R + V + ++ ++ DN
Sbjct: 453 H-KNLTG-DSVRLLTKGNTMF---PCFSDSRDPDVVIYKLHGSLSQQMRTSTLQHFARDN 507
Query: 502 EAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKGS--VF 559
EA L ++ TDV +RG++ V+ D P D +HRVGRT R +KG +F
Sbjct: 508 EATKGKHL-IMFCTDVASRGLDLPHVGSVIELDPPFAVEDHLHRVGRTARAGEKGESLLF 566
Query: 560 IITGKRVK 567
++ G+ K
Sbjct: 567 LLPGEEEK 574
>YHR169w [A] KOG0340 ATP-dependent RNA helicase
Length = 431
Score = 78.6 bits (192), Expect = 2e-14
Identities = 86/394 (21%), Positives = 160/394 (39%), Gaps = 64/394 (16%)
Query: 192 AETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSKL 251
A+TGSGKT+A+ P++ W +D + + ++L PT EL Q+ + + L
Sbjct: 46 AKTGSGKTIAFAGPMLT----------KWS--EDPSGMFGVVLTPTRELAMQIAEQFTAL 93
Query: 252 EPALGMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRI--LSQVK 309
++ + G S L+ + ++ TPG+ L + M + D + L + K
Sbjct: 94 GSSMNIRVSVIVGGESIVQQALDLQRKPHFIIATPGR---LAHHIMSSGDDTVGGLMRAK 150
Query: 310 FLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFC-SATIPKEFQKTITRLFPTVGVIAS 368
+LV+DEAD LL ++ + H+ C SA PK+ ++T+
Sbjct: 151 YLVLDEADILLTSTFAD-------------HLATCISALPPKDKRQTL------------ 185
Query: 369 PNLHKINHKNQIKLINADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIFVNEKENV 428
L +Q+K + AP + K A + S++ I + ++ +
Sbjct: 186 --LFTATITDQVKSLQN--APVQKGKPPLFAYQVESVDNVAIPSTLKIEYILVPEHVKEA 241
Query: 429 PLVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIP 488
L +Y + + N + MT + + V +
Sbjct: 242 YLYQLLTCEEYENKTAIIFVN-----------------RTMTAEILRRTLKQLEVRVASL 284
Query: 489 NSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGR 548
+S + +E F + ++L+ TDV +RG++ VV YDIP+ P +HR GR
Sbjct: 285 HSQMPQQERTNSLHRFRANAARILIATDVASRGLDIPTVELVVNYDIPSDPDVFIHRSGR 344
Query: 549 TGRMNQKGSVFIITGKRVKNWVKAIPSIVSKNVS 582
T R + G +R + ++AI ++K ++
Sbjct: 345 TARAGRIGDAISFVTQRDVSRIQAIEDRINKKMT 378
>CE27553 [A] KOG0337 ATP-dependent RNA helicase
Length = 853
Score = 78.6 bits (192), Expect = 2e-14
Identities = 57/193 (29%), Positives = 95/193 (48%), Gaps = 22/193 (11%)
Query: 158 EFKKHLKPSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRTEMEN 217
E K +P+PIQ +T +MD + V + + TGSGKT A++IP++ LKR
Sbjct: 40 EKKGFNQPTPIQR----KTIPCIMDGKDVVAM--SRTGSGKTAAFVIPMLQKLKR----- 88
Query: 218 PSWETLKDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKG 277
+D +R++++ PT EL Q ++ V +L G+ G + +
Sbjct: 89 ------RDTTGIRALMVSPTRELALQTFKVVKELGRFTGLRCACLVGGDQIEEQFSTIHE 142
Query: 278 RIDIMVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQN 337
DI++ TPG++L + + D LS V+++V DEAD L + + + T+K +
Sbjct: 143 NPDILLATPGRLLHV-----IVEMDLRLSYVQYVVFDEADRLFEMGFQDQLTETLKRIPE 197
Query: 338 LNHVLFCSATIPK 350
L SAT+PK
Sbjct: 198 SRQTLLFSATLPK 210
>At5g54910 [A] KOG0343 RNA Helicase
Length = 739
Score = 78.2 bits (191), Expect = 3e-14
Identities = 97/384 (25%), Positives = 162/384 (41%), Gaps = 76/384 (19%)
Query: 191 AAETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSK 250
AA TGSGKT+A++IP+++ L R E + V II+ PT EL Q + ++K
Sbjct: 114 AARTGSGKTLAFVIPILEKLHR--------ERWSPEDGVGCIIISPTRELAAQTFGVLNK 165
Query: 251 LEPALGMHTYKWDAGSSYKG--FVEALKGRI---DIMVTTPGKILSLFNISMVNRPDRIL 305
+ +K+ AG G V+ K R+ +I+V PG++L M P+
Sbjct: 166 VG-----KFHKFSAGLLIGGREGVDVEKERVHEMNILVCAPGRLLQ----HMDETPNFEC 216
Query: 306 SQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFCSATIPKEFQKTITRLFPTVGV 365
Q++ L++DEAD +LD ++ I + L SAT K+ K + RL
Sbjct: 217 PQLQILILDEADRVLDSAFKGQLDPIISQLPKHRQTLLFSATQTKKV-KDLARL-----S 270
Query: 366 IASPNLHKINHKNQIKLINADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIFVNEK 425
+ P ++ + + M + +L+S + +++ R+++F++ K
Sbjct: 271 LRDPEYISVHAEAVTATPTSLMQTVMIVPVEKKLDMLWSFIKTHLN----SRILVFLSTK 326
Query: 426 ENVPLVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTM 485
+ V V E K++P + P K + + S+
Sbjct: 327 KQVKF---------------------VHEAFNKLRPGI-PLKSLHGKMSQ---------- 354
Query: 486 KIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINF-RGCRYVVLYDIPNTPVDLVH 544
E+ F+E VL TDVLARG++F + +VV D P +H
Sbjct: 355 ---------EKRMGVYSQFIERQ-SVLFCTDVLARGLDFDKAVDWVVQVDCPEDVASYIH 404
Query: 545 RVGRTGRMNQKG-SVFIITGKRVK 567
RVGRT R +G S+ +T K
Sbjct: 405 RVGRTARFYTQGKSLLFLTPSEEK 428
>YBR142w [A] KOG0347 RNA helicase
Length = 773
Score = 77.4 bits (189), Expect = 6e-14
Identities = 117/494 (23%), Positives = 200/494 (39%), Gaps = 97/494 (19%)
Query: 112 SKINDFSQLKILPEVRDKLMEVISSESLLNKNLLDVKYNPKENNVQEFKKHLKPSPIQTT 171
SK+ D S+ +V + + E + E++ NK++ +P N+ E+ +L P +
Sbjct: 132 SKLTDPSE-----DVDEDVDEDVLKENVFNKDINIDDISPV--NLPEWT-NLAPLSMTIL 183
Query: 172 AIYQTSKTLMDPQLQVRLIA-----------AETGSGKTMAYLIPLVDYLKRTEMENPSW 220
Q L ++Q + I A TGSGKT+AY IP+V+ L + N S
Sbjct: 184 QSLQNLNFLRPTEIQKKSIPVIMQGVDVMGKASTGSGKTLAYGIPIVEKL----ISNFSQ 239
Query: 221 ETLKDKAIVRSIILLPTHELVEQVYQTVSKL-EPALGMHTY---KWDAGSSYKGFVEALK 276
+ K S+I PT EL QV + K+ EP L Y G S + LK
Sbjct: 240 KNKKP----ISLIFTPTRELAHQVTDHLKKICEPVLAKSQYSILSLTGGLSIQKQQRLLK 295
Query: 277 --GRIDIMVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKH 334
I++ TPG+ L L + N + S+V L++DEAD LL ++ IKH
Sbjct: 296 YDNSGQIVIATPGRFLEL--LEKDNTLIKRFSKVNTLILDEADRLLQDGHFDEFEKIIKH 353
Query: 335 M--------------QNLNHVLFCSATIPKEF-------QKTITRLFPT----VGVIASP 369
+ + L SAT + ++ R F + +
Sbjct: 354 LLVERRKNRENSEGSSKIWQTLIFSATFSIDLFDKLSSSRQVKDRRFKNNEDELNAVIQH 413
Query: 370 NLHKINHKNQIKLINADMAPYKGSKTK-------ALAQILYSINRDNIDPGFEKRVVIFV 422
+ KI+ ++ +I+ + S+ K L + LY + PG +IF
Sbjct: 414 LMSKIHFNSKPVIIDTNPESKVSSQIKESLIECPPLERDLYCYYFLTMFPG---TTLIFC 470
Query: 423 NEKENVPLVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENT 482
N ++V + L N G + + + + RL+ ++ F K + K + + N
Sbjct: 471 NAIDSVKKLTVYL-NNLGIPAFQIHSSMTQKNRLKSLERF-----KQQSAKQKTINHSNP 524
Query: 483 VTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDL 542
++++ VL+ +DV ARG++ G ++V+ Y +P +
Sbjct: 525 DSVQLST---------------------VLIASDVAARGLDIPGVQHVIHYHLPRSTDIY 563
Query: 543 VHRVGRTGRMNQKG 556
+HR GRT R +G
Sbjct: 564 IHRSGRTARAGSEG 577
>At1g63250 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 798
Score = 77.4 bits (189), Expect = 6e-14
Identities = 87/385 (22%), Positives = 165/385 (42%), Gaps = 75/385 (19%)
Query: 189 LIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVY--- 245
L+ A+TG+GK+MA+L+P ++ + + S + + A + ++IL PT EL Q+
Sbjct: 369 LVKAKTGTGKSMAFLLPAIETVLKAMN---SGKGVNKVAPIFALILCPTRELASQIAAEG 425
Query: 246 QTVSKLEPALGMHTYKWDAGSSYKGFVEALKGR-IDIMVTTPGKILSLFNISMVNRPDRI 304
+ + K +G+ T G+ +K + L+ I++ TPG++L +I +
Sbjct: 426 KALLKFHDGIGVQTLI--GGTRFKLDQQRLESEPCQILIATPGRLLD--HIENKSGLTSR 481
Query: 305 LSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFCSATIPKEFQKTITRL----- 359
L +K ++DEAD LLD + D I + L SATIPKE ++ +++L
Sbjct: 482 LMALKLFIVDEADLLLDLGFRRDVEKIIDCLPRQRQSLLFSATIPKEVRR-VSQLVLKRD 540
Query: 360 ---FPTVGVIASPNLHKINHKNQIKLINADMAPYKGSKTKALAQILYSINRDNIDPGFEK 416
T+G+ K+ + +AP++ ++ + +++I+ +
Sbjct: 541 HSYIDTIGLGCVETHDKVRQ-------SCIVAPHESH-----FHLVPHLLKEHINNTPDY 588
Query: 417 RVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEK 476
++++F + L+ T L E +L + P+ TR S++
Sbjct: 589 KIIVFCSTGMVTSLMYTLLR----------------EMKLNVREIHARKPQLHRTRVSDE 632
Query: 477 VTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIP 536
N + + VT+DV ARG+N+ V+ IP
Sbjct: 633 FKESNRLIL---------------------------VTSDVSARGMNYPDVTLVIQVGIP 665
Query: 537 NTPVDLVHRVGRTGRMNQKGSVFII 561
+ +HR+GRTGR + G ++
Sbjct: 666 SDREQYIHRLGRTGREGKGGEGLLL 690
>YHR065c [A] KOG0330 ATP-dependent RNA helicase
Length = 543
Score = 77.0 bits (188), Expect = 7e-14
Identities = 105/424 (24%), Positives = 162/424 (37%), Gaps = 88/424 (20%)
Query: 164 KPSPIQTTAIYQTSKTLMDPQLQVRLIA--AETGSGKTMAYLIPLVDYLKRTEMENPSWE 221
KP+PIQ+ AI P L+ I A+TGSGKT A+ IP+++ L W
Sbjct: 145 KPTPIQSKAI--------PPALEGHDIIGLAQTGSGKTAAFAIPILNRL---------WH 187
Query: 222 TLKDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRIDI 281
D+ + IL PT EL +Q+ +T L +G+ + G + L + I
Sbjct: 188 ---DQEPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHI 244
Query: 282 MVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSW--VEDSYSTIKHMQNLN 339
++ TPG+++ + N L ++KFLVMDEAD LLD + V D I Q
Sbjct: 245 IIATPGRLMD----HLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERT 300
Query: 340 HVLFCSATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQI--KLINADMAPYKGSKTKA 397
LF SAT+ + K + +P +++K Q L+ M G K
Sbjct: 301 TYLF-SATMTSKIDKL------QRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTY 353
Query: 398 LAQILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSVEERLE 457
L +L K ++IF K N + + L N AL G+ + +R+
Sbjct: 354 LIYLLNEF--------IGKTMIIFTRTKANAERL-SGLCNLLEFSATALHGDLNQNQRMG 404
Query: 458 KIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDV 517
+ F K R T + IP+ +IV+
Sbjct: 405 SLDLF-----KAGKRSILVATDVAARGLDIPSVDIVVN---------------------- 437
Query: 518 LARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKGSVFIITGKRVKNWVKAIPSIV 577
YDIP +HRVGRT R + G + + + I ++
Sbjct: 438 ---------------YDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEEVL 482
Query: 578 SKNV 581
K +
Sbjct: 483 GKKL 486
>Hs8922976 [A] KOG0330 ATP-dependent RNA helicase
Length = 540
Score = 77.0 bits (188), Expect = 7e-14
Identities = 50/138 (36%), Positives = 78/138 (56%), Gaps = 12/138 (8%)
Query: 191 AAETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSK 250
AAETGSGKT++YL+PL+ L + PS ++L A R ++L+P+ EL +QV
Sbjct: 171 AAETGSGKTLSYLLPLLQRL----LGQPSLDSLPIPA-PRGLVLVPSRELAQQVRAVAQP 225
Query: 251 LEPALGMHTYKWDAGSSYKGFVEALKGR--IDIMVTTPGKILSLFNISMVNRPDRILSQV 308
L +LG+ + G + L + D++V TPG + +++ L Q+
Sbjct: 226 LGRSLGLLVRDLEGGHGMRRIRLQLSRQPSADVLVATPGALWKALKSRLIS-----LEQL 280
Query: 309 KFLVMDEADTLLDKSWVE 326
FLV+DEADTLLD+S++E
Sbjct: 281 SFLVLDEADTLLDESFLE 298
>Hs20149629 [A] KOG0330 ATP-dependent RNA helicase
Length = 455
Score = 77.0 bits (188), Expect = 7e-14
Identities = 90/390 (23%), Positives = 147/390 (37%), Gaps = 71/390 (18%)
Query: 192 AETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSKL 251
AETGSGKT A+ +P+++ L T + +++L PT EL Q+ + L
Sbjct: 68 AETGSGKTGAFALPILNALLETPQR------------LFALVLTPTRELAFQISEQFEAL 115
Query: 252 EPALGMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQVKFL 311
++G+ + G AL + I++ TPG+++ + N L +K+L
Sbjct: 116 GSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLID----HLENTKGFNLRALKYL 171
Query: 312 VMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFCSATIPKEFQKTITRLFPTVGVIASPNL 371
VMDEAD +L+ + + +K + SAT+ K+ QK A +
Sbjct: 172 VMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSK 231
Query: 372 HKINHKNQIKLINADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIFVNEKENVPLV 431
++ K Q I P K K L IL + ++ +IF + N
Sbjct: 232 YQTVEKLQQYYI---FIPSK-FKDTYLVYILNELAGNSF--------MIFCSTCNNTQRT 279
Query: 432 ATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSN 491
A L N G + L G S +RL + F +
Sbjct: 280 ALLLRN-LGFTAIPLHGQMSQSKRLGSLNKFKAKAR------------------------ 314
Query: 492 IVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGR 551
+L+ TDV +RG++ VV +DIP D +HRVGRT R
Sbjct: 315 ------------------SILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTAR 356
Query: 552 MNQKGSVFIITGKRVKNWVKAIPSIVSKNV 581
+ G + + I ++ K +
Sbjct: 357 AGRSGKAITFVTQYDVELFQRIEHLIGKKL 386
>At3g09720 [A] KOG0344 ATP-dependent RNA helicase
Length = 545
Score = 76.3 bits (186), Expect = 1e-13
Identities = 92/371 (24%), Positives = 156/371 (41%), Gaps = 79/371 (21%)
Query: 192 AETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSKL 251
A TGSGKT A++ P++ LK PS + +R++IL P EL Q + KL
Sbjct: 185 APTGSGKTFAFICPMLIKLKVLNCR-PSTDG------IRAVILSPARELAAQTAREGKKL 237
Query: 252 EPALGMHTYKWDAGSSYKGFVEAL---KGRIDIMVTTPGKILSLFNISMVNRPDRILSQV 308
H K V+ K D++++TP ++ ++ LS+V
Sbjct: 238 IKGSNFHIRLMT-----KPLVKTADFSKLWCDVLISTPMRLKRAIKAKKID-----LSKV 287
Query: 309 KFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHV--LFCSATIPKEFQKTITRLF-PTVGV 365
++LV+DE+D L ++S ++ +K N + + LF SAT+P ++ + V V
Sbjct: 288 EYLVLDESDKLFEQSLLKQIDCVVKACSNPSIIRSLF-SATLPDSVEELARSIMHDAVRV 346
Query: 366 IASPNLHKINHKNQIKLINADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIFVNEK 425
I I KN + GS+ L + S ++++P V+IFV K
Sbjct: 347 I-------IGRKNTASETVKQKLVFAGSEEGKLLALRQSF-AESLNPP----VLIFVQSK 394
Query: 426 ENVPLVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTM 485
E +E +++K EN +
Sbjct: 395 ERA------------------------KELYDELK------------------CEN-IRA 411
Query: 486 KIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHR 545
+ +S++ E + F VL+ TDV+ARG++F+G V+ YD P++ +HR
Sbjct: 412 GVIHSDLPPGERENAVDQFRAGEKWVLIATDVIARGMDFKGINCVINYDFPDSASAYIHR 471
Query: 546 VGRTGRMNQKG 556
+GR+GR + G
Sbjct: 472 IGRSGRAGRSG 482
>At3g09620 [A] KOG0334 RNA helicase
Length = 989
Score = 76.3 bits (186), Expect = 1e-13
Identities = 55/190 (28%), Positives = 98/190 (50%), Gaps = 15/190 (7%)
Query: 164 KPSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETL 223
KP PIQ A+ +M + + + A+TGSGKT+ +++P++ ++K + P E
Sbjct: 418 KPMPIQAQAL----PIIMSGRDCIGV--AKTGSGKTLGFVLPMLRHIK----DQPPVEA- 466
Query: 224 KDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRIDIMV 283
D I +++ PT ELV+Q+Y + K ALG+ GS + LK +I+V
Sbjct: 467 GDGPI--GLVMAPTRELVQQIYSDIRKFSKALGIICVPVYGGSGVAQQISELKRGTEIVV 524
Query: 284 TTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLF 343
TPG+++ + S + L +V +LVMDEAD + D + +++++ +
Sbjct: 525 CTPGRMIDILCTSSGKITN--LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVL 582
Query: 344 CSATIPKEFQ 353
SAT P++ +
Sbjct: 583 FSATFPRQVE 592
>Hs19923595 [A] KOG0337 ATP-dependent RNA helicase
Length = 882
Score = 75.5 bits (184), Expect = 2e-13
Identities = 91/402 (22%), Positives = 155/402 (37%), Gaps = 78/402 (19%)
Query: 160 KKHLKPSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRTEMENPS 219
K + P+PIQ +T ++D + V + A TGSGKT +L+P+ + LK + +
Sbjct: 114 KGYKVPTPIQR----KTIPVILDGKDVVAM--ARTGSGKTACFLLPMFERLKTHSAQTGA 167
Query: 220 WETLKDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRI 279
R++IL PT EL Q + +L G+ T G + AL
Sbjct: 168 ----------RALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHENP 217
Query: 280 DIMVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLN 339
DI++ TPG++ + + L V+++V DEAD L + + E I + +
Sbjct: 218 DIIIATPGRL-----VHVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGH 272
Query: 340 HVLFCSATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQI--KLINADMAPYKGSKTKA 397
+ SAT+PK + F G + P L +++ ++ +L + + +K
Sbjct: 273 QTVLFSATLPKLLVE-----FARAG-LTEPVLIRLDVDTKLNEQLKTSFFLVREDTKAAV 326
Query: 398 LAQILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSVEERLE 457
L +L+++ R + + V+FV K + + L Q
Sbjct: 327 LLHLLHNVVRP------QDQTVVFVATKHHAEYLTELLTTQ--------------RVSCA 366
Query: 458 KIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDV 517
I +DP T RK F L+ TD+
Sbjct: 367 HIYSALDP----TARKINLA-------------------------KFTLGKCSTLIVTDL 397
Query: 518 LARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKGSVF 559
ARG++ V+ Y P +HRVGR R + G+ +
Sbjct: 398 AARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAY 439
>At3g53110 [A] KOG0332 ATP-dependent RNA helicase
Length = 496
Score = 75.5 bits (184), Expect = 2e-13
Identities = 99/417 (23%), Positives = 166/417 (39%), Gaps = 97/417 (23%)
Query: 161 KHLKPSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRTEMENPSW 220
K KPS IQ ++ +M P + + A GSGKT +++ ++ + T E
Sbjct: 111 KFEKPSKIQAISL----PMIMTPPHKHLIAQAHNGSGKTTCFVLGMLSRVDPTLRE---- 162
Query: 221 ETLKDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKG--- 277
+++ + PT EL Q + + K+ G+ T + S +G A +G
Sbjct: 163 --------PQALCICPTRELANQNMEVLQKMGKFTGI-TAELAVPDSTRGAPAATRGAPV 213
Query: 278 RIDIMVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLL-DKSWVEDSYSTIKHMQ 336
+++ TPG + + L+ +K LV DEAD +L + +DS +K +
Sbjct: 214 SAHVVIGTPGTLKKWMAFKRLG-----LNHLKILVFDEADHMLATDGFRDDSLKIMKDIG 268
Query: 337 NLN---HVLFCSATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQIKLINADMAPYKGS 393
+N VL SAT + + + R + NQ+ + D+A
Sbjct: 269 RVNPNFQVLLFSATFNETVKDFVAR--------------TVKDPNQLFVKREDLALDSVK 314
Query: 394 KTKALA---QILYSINRDNI-DPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGN 449
+ K + Q + +D I + G + +IFV K + V LA + G+DV ++ GN
Sbjct: 315 QYKVVCPKEQNKIEVIKDQIMELGDIGQTIIFVKTKASAQKVHKALA-EMGYDVTSVHGN 373
Query: 450 DSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTL 509
+T +K+ E F E
Sbjct: 374 -------------------LTESDRDKIVKE-----------------------FKECLT 391
Query: 510 KVLVTTDVLARGINFRGCRYVVLYDIPNTPVD-------LVHRVGRTGRMNQKGSVF 559
+VL+ TDV+ARG + + VV Y++P +HRVGR GR +KG+VF
Sbjct: 392 QVLIATDVIARGFDQQRVNLVVNYNLPTKYETGEPDYEVYLHRVGRAGRFGRKGAVF 448
>Hs21327697 [A] KOG0332 ATP-dependent RNA helicase
Length = 369
Score = 75.1 bits (183), Expect = 3e-13
Identities = 96/410 (23%), Positives = 168/410 (40%), Gaps = 97/410 (23%)
Query: 164 KPSPIQTTAIYQTSKTLMDPQLQVRLIA-AETGSGKTMAYLIPLVDYLKRTEMENPSWET 222
+PS IQ A+ +M LIA +++G+GKT A+++ ++ + E+
Sbjct: 5 RPSKIQEMAL-----PMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNALEL------- 52
Query: 223 LKDKAIVRSIILLPTHELVEQVYQTVSKLEP-ALGMHTYKWDAGSSYKGFVEALKGRIDI 281
+ + L PT+EL Q + V ++ + + G+ + K I
Sbjct: 53 -----FPQCLCLAPTYELALQTGRVVEQMGKFCVDVQVMYAIRGNRIPRGTDITK---QI 104
Query: 282 MVTTPGKILS-LFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKH-MQNLN 339
++ TPG +L F + +++ L++++ V+DEAD ++D D I+ + +
Sbjct: 105 IIGTPGTVLDWCFKLKLID-----LTKIRVFVLDEADVMIDTQGFSDHSIRIQRALPSEC 159
Query: 340 HVLFCSATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQIKLINAD----MAPYKGSKT 395
+L SAT R+ P PN+ K+ K ++ L N + ++ K
Sbjct: 160 QMLLFSATFEDSVWHFAERIIP------DPNVIKLR-KEELTLNNIRQYYVLCEHRKDKY 212
Query: 396 KALAQILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSVEER 455
+AL I SI + +IF + N + ++ Q GH V L+G +VE+R
Sbjct: 213 QALCNIYGSITIG--------QAIIFCQTRRNAKWLTVEMI-QDGHQVSLLSGELTVEQR 263
Query: 456 LEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTT 515
I+ F D + KVL+TT
Sbjct: 264 ASIIQRFRDGKE------------------------------------------KVLITT 281
Query: 516 DVLARGINFRGCRYVVLYDIPNTPVD------LVHRVGRTGRMNQKGSVF 559
+V ARGI+ + VV +D+P + +HR+GRTGR +KG F
Sbjct: 282 NVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAF 331
>Hs13787209 [A] KOG0331 ATP-dependent RNA helicase
Length = 715
Score = 75.1 bits (183), Expect = 3e-13
Identities = 89/377 (23%), Positives = 150/377 (39%), Gaps = 83/377 (22%)
Query: 192 AETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSKL 251
A TG+GKT ++ IPL++ L + + K + ++L PT EL QV + S +
Sbjct: 162 ARTGTGKTFSFAIPLIEKL------HGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDI 215
Query: 252 EPALGMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQVKFL 311
L + + G+ Y G E ++ IDI+V TPG+I ++ L+++K +
Sbjct: 216 TKKLSVACFY--GGTPYGGQFERMRNGIDILVGTPGRIKDHIQNGKLD-----LTKLKHV 268
Query: 312 VMDEADTLLDKSWVED-----SYSTIKHMQNLNHVLFCSATIP-------KEFQKTITRL 359
V+DE D +LD + + S + K ++ L SAT P K++ K+
Sbjct: 269 VLDEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQ 328
Query: 360 FPTVGVIASPNLHKINHKNQIKLINADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVV 419
+G K Q I + K T+ A I I + G + R +
Sbjct: 329 VDLIG-----------KKTQKTAITVEHLAIKCHWTQRAAVIGDVI---RVYSGHQGRTI 374
Query: 420 IFVNEKENVPLVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTT 479
IF K+ + L+ N ++++ + + D P+K
Sbjct: 375 IFCETKK---------------EAQELSQNSAIKQDAQSLHG--DIPQK----------- 406
Query: 480 ENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTP 539
+ +T+K F + VLV T+V ARG++ V+ P
Sbjct: 407 QREITLK----------------GFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDV 450
Query: 540 VDLVHRVGRTGRMNQKG 556
+HR GRTGR + G
Sbjct: 451 ESYIHRSGRTGRAGRTG 467
>7298752 [A] KOG0330 ATP-dependent RNA helicase
Length = 507
Score = 74.7 bits (182), Expect = 4e-13
Identities = 96/394 (24%), Positives = 152/394 (38%), Gaps = 75/394 (19%)
Query: 192 AETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSKL 251
AETGSGKT A+ +P++ L +ENP +++L PT EL Q+ + L
Sbjct: 105 AETGSGKTGAFALPILHAL----LENPQRYF--------ALVLTPTRELAFQIGEQFEAL 152
Query: 252 EPALGMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILS-LFNISMVNRPDRILSQVKF 310
+G+ G L + I++ TPG+++ L N+ N L +K+
Sbjct: 153 GSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENMKGFN-----LKAIKY 207
Query: 311 LVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFCSATIPKEFQK-TITRLFPTVGVIASP 369
LVMDEAD +L+ + + +K + SAT+ K+ +K L V V S
Sbjct: 208 LVMDEADRILNMDFEVELDKILKVLPRERRTFLFSATMTKKVKKLQRASLKDPVKVEVSN 267
Query: 370 NLHKINHKNQIKLINADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIFVNEKENVP 429
+ Q L P K K L IL + ++ +IF + N
Sbjct: 268 KYQTVEQLQQSYL----FIPVK-YKDVYLVHILNELAGNSF--------MIFCSTCNNTV 314
Query: 430 LVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPN 489
A L G + L G S +RL + F K N
Sbjct: 315 KTALML-RALGLAAIPLHGQMSQNKRLAALNKF-----------------------KAKN 350
Query: 490 SNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRT 549
+I L++TDV +RG++ VV +DIP D +HRVGRT
Sbjct: 351 RSI-------------------LISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRT 391
Query: 550 GRMNQKGSVFIITGKRVKNWVKAIPSIVSKNVSI 583
R + G + + + I ++ K +++
Sbjct: 392 ARAGRSGKAITLVSQYDIELYQRIEHLLGKQLTL 425
>SPBC24C6.02 [A] KOG0345 ATP-dependent RNA helicase
Length = 606
Score = 73.9 bits (180), Expect = 6e-13
Identities = 92/412 (22%), Positives = 157/412 (37%), Gaps = 86/412 (20%)
Query: 164 KPSPIQTTAI--YQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRTEMENPSWE 221
K +P+Q AI + +K L+ + A TGSGKT+AYL+P D + R +
Sbjct: 23 KMTPVQANAIPLFLKNKDLV--------VEAVTGSGKTLAYLLPCFDKVTRRD------- 67
Query: 222 TLKDKAIVRSIILLPTHELVEQVYQTVSKL---EP-------ALGMHTYKWDAGSSYKGF 271
D+ + ++I+ PT EL Q++ +L +P L Y G+
Sbjct: 68 --TDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTLTNDL 125
Query: 272 VEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYST 331
+ +++ TPG++ + +S ++ ++ L++DEADTL+D + S
Sbjct: 126 ASFREKNPSVVIGTPGRLNEM--LSHISS-----KHLEILILDEADTLIDMGFQRTLQSI 178
Query: 332 IKHMQNLNHVLFCSATIPKEFQK--TITRLFPTVGVIASPNLHKINHKNQIKLINADMAP 389
I + SAT+ I L +V V + KI+ + L +
Sbjct: 179 ISQLPKQRRTGLFSATMNDTVSSFLKIAGLRNSVRVSVTVTSKKIDTRTPSSLAIQSLVI 238
Query: 390 YKGSKTKALAQILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGN 449
K + + +L +I +EK +V F + + L + ++VAL G
Sbjct: 239 PPIYKVQCMIHLLCTIE-------YEKAIVFFSSCASVEYFNSLFLTYKLPFEIVALHGQ 291
Query: 450 DSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTL 509
R + F +KS K T
Sbjct: 292 QVQSNRSRNFEKF---------KKSNKKT------------------------------- 311
Query: 510 KVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKGSVFII 561
VL TTD+ +RG++ +V+ D P P HR GR GR + G ++
Sbjct: 312 -VLFTTDIASRGLDIPNVDFVLQLDPPLDPKSFSHRCGRAGRAGRAGVAIVL 362
>At5g08610 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 827
Score = 73.9 bits (180), Expect = 6e-13
Identities = 90/404 (22%), Positives = 169/404 (41%), Gaps = 68/404 (16%)
Query: 161 KHLKPSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRTEMENPSW 220
K +K + +T + Q + + Q + L A+TG+GKT+A+L+P ++ + ++ P+
Sbjct: 372 KAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSP---PAS 428
Query: 221 ETLKDKAIVRSIILLPTHELVEQVY---QTVSKLEPALGMHTYKWDAGSSYKGFVEALKG 277
+ I+ +++ PT EL Q T+ K P++G+ G+ ++
Sbjct: 429 RDSRQPPII-VLVVCPTRELASQAAAEANTLLKYHPSIGVQVVI--GGTKLPTEQRRMQT 485
Query: 278 R-IDIMVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQ 336
I+V TPG++ +I + L VK LV+DEAD LLD + D I +
Sbjct: 486 NPCQILVATPGRLKD--HIENTSGFATRLMGVKVLVLDEADHLLDMGFRRDIERIIAAVP 543
Query: 337 NLNHVLFCSATIPKEFQK----TITRLFPTVGVIASPNLHKINHKNQIKLINADMAPYKG 392
SAT+P+E ++ + R + + + Q+ +I
Sbjct: 544 KQRQTFLFSATVPEEVRQICHVALKRDHEFINCVQEGSGETHQKVTQMYMI--------- 594
Query: 393 SKTKALAQILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSV 452
+ +L+ + +++I + +V+IF LVA L +Q +V
Sbjct: 595 ASLDRHFSLLHVLLKEHIADNVDYKVIIFCTTAMVTRLVA-DLLSQLSLNV--------- 644
Query: 453 EERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVL 512
+++ +RK + T ++ F +S +L
Sbjct: 645 --------------REIHSRKPQSYRT-------------------RVSDEFRKSKAIIL 671
Query: 513 VTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKG 556
VT+DV ARG+++ VV +P+ +HR+GRTGR ++G
Sbjct: 672 VTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEG 715
>7293348 [A] KOG0348 ATP-dependent RNA helicase
Length = 975
Score = 73.6 bits (179), Expect = 8e-13
Identities = 101/433 (23%), Positives = 170/433 (38%), Gaps = 114/433 (26%)
Query: 189 LIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTV 248
L+ ++TGSGKT+AY +PLV+ L++ + ++ K V +++++PT ELV Q Y+ +
Sbjct: 369 LVRSQTGSGKTLAYALPLVELLQKQQ------PRIQRKDGVLALVIVPTRELVMQTYELI 422
Query: 249 SKLEPALGMHTYKWD------AGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPD 302
KL + Y W G S K L+ I+I++ TPG+++ +++
Sbjct: 423 QKL-----VKPYTWIVPGSLLGGESRKSEKARLRKGINILIGTPGRLVD----HLLHTAS 473
Query: 303 RILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFCSATIPKEFQKTITRLFPT 362
L++++FL++DEAD LL+ + D ++ + + KE + L
Sbjct: 474 FKLTKLQFLILDEADRLLELGYERDVKQLVEAIDKQR-----AECEDKELPQLQRMLLSA 528
Query: 363 VGVIASPNLHKINHKNQIKLINADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIFV 422
L + KN + + N+D A K+K G++K + +
Sbjct: 529 TLTSQVQQLAGLTLKNPLYIDNSDEAASAALKSK---------------DGYQKETIEAL 573
Query: 423 NEKENVPLVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENT 482
E ++ +Y DV TG S+ E L+ + + PPK S + E
Sbjct: 574 LEVDDG-------LGEYQEDV---TGVLSIPENLQ-LSYVVVPPKLRLVALSSLLAKEVD 622
Query: 483 VTMK-------IPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGIN------------ 523
+ K + + +V NEA T +VL D +G +
Sbjct: 623 ASPKQFKAIVFMSTTEMVNFHHDMLNEAL---TRRVLDEEDEQEKGDSDDDGDIPLLQGL 679
Query: 524 --------------------FRGCRYVVL---------YDIPN-----------TPVDLV 543
FR C VL D+P+ T D V
Sbjct: 680 RFFKLHGSMTQTERQGVFRGFRDCASCVLLATDVVGRGIDVPDIKLVVQYTPPQTTADFV 739
Query: 544 HRVGRTGRMNQKG 556
HRVGRT R +KG
Sbjct: 740 HRVGRTARAGRKG 752
>HsM7019399 [A] KOG0332 ATP-dependent RNA helicase
Length = 369
Score = 73.2 bits (178), Expect = 1e-12
Identities = 95/410 (23%), Positives = 167/410 (40%), Gaps = 97/410 (23%)
Query: 164 KPSPIQTTAIYQTSKTLMDPQLQVRLIA-AETGSGKTMAYLIPLVDYLKRTEMENPSWET 222
+PS IQ A+ +M LIA +++G+GKT A+++ ++ + E+
Sbjct: 5 RPSKIQEMAL-----PMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNALEL------- 52
Query: 223 LKDKAIVRSIILLPTHELVEQVYQTVSKLEP-ALGMHTYKWDAGSSYKGFVEALKGRIDI 281
+ + L PT+EL Q + V ++ + + G+ + K I
Sbjct: 53 -----FPQCLCLAPTYELALQTGRVVEQMGKFCVDVQVMYAIRGNRIPRGTDITK---QI 104
Query: 282 MVTTPGKILS-LFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKH-MQNLN 339
++ TPG +L F + +++ L++++ V+DEAD ++D D I+ + +
Sbjct: 105 IIGTPGTVLDWCFKLKLID-----LTKIRVFVLDEADVMIDTQGFSDHSIRIQRALPSEC 159
Query: 340 HVLFCSATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQIKLINAD----MAPYKGSKT 395
+L SAT R+ P PN+ K+ K ++ L N + ++ K
Sbjct: 160 QMLLFSATFEDSVWHFAERIIP------DPNVIKLR-KEELTLNNIRQYYVLCEHRKDKY 212
Query: 396 KALAQILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSVEER 455
+AL I SI + +IF + N + ++ Q GH V L+G +VE+R
Sbjct: 213 QALCNIYGSITIG--------QAIIFCQTRRNAKWLTVEMI-QDGHQVSLLSGELTVEQR 263
Query: 456 LEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTT 515
+ F D + KVL+TT
Sbjct: 264 ASITQRFRDGKE------------------------------------------KVLITT 281
Query: 516 DVLARGINFRGCRYVVLYDIPNTPVD------LVHRVGRTGRMNQKGSVF 559
+V ARGI+ + VV +D+P + +HR+GRTGR +KG F
Sbjct: 282 NVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAF 331
>At5g05450 [A] KOG0345 ATP-dependent RNA helicase
Length = 593
Score = 73.2 bits (178), Expect = 1e-12
Identities = 78/373 (20%), Positives = 154/373 (40%), Gaps = 52/373 (13%)
Query: 190 IAAETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVS 249
+ A TGSGKT+A+++PLV+ L+R+ P V +I+ PT EL Q+Y
Sbjct: 58 VDAATGSGKTLAFVVPLVEILRRSTSFPPKPHQ------VMGVIISPTRELSTQIYNVAQ 111
Query: 250 KLEPAL-GMHTYKWDAGSSYKGFVEALKGR-IDIMVTTPGKILSLFNISMVNRPDRILSQ 307
L +++ G K ++ ++ ++++ TPG++ + M
Sbjct: 112 PFVSTLANVNSVLLVGGREVKADMKIIEEEGCNVLIGTPGRLSDI----MERMEILDFRN 167
Query: 308 VKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFCSATIPKEFQKTITRLFPTVGVIA 367
++ L++DEAD LL+ + + +N+++ + +PK+ + T LF
Sbjct: 168 LEILILDEADRLLEMGF----------QRQVNYII---SRLPKQRR---TGLFSATQTEG 211
Query: 368 SPNLHKINHKNQIKLINADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIFVNEKEN 427
L K +N +++ + K+ ++ + G + +K++
Sbjct: 212 VEELAKAGLRNPVRV---------EVRAKSKSESSQQLTNSKTPSGLHLEYMECEADKKS 262
Query: 428 VPLVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKI 487
LV + N +V SV+ K+ ++++
Sbjct: 263 SQLVDLLIKNSDKKLIVFFMTCASVD---------------YWGLVLSKIPALKSISLIP 307
Query: 488 PNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVG 547
+ ++ + +F +++ L+ TDV ARG++ G YVV YD P P HR G
Sbjct: 308 IHGDMKQNARDKALASFTKASSGALLCTDVAARGLDIPGIDYVVQYDPPQDPNMFNHRAG 367
Query: 548 RTGRMNQKGSVFI 560
RT R+ ++G +
Sbjct: 368 RTARLGRQGRAIV 380
>At5g65900 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 633
Score = 72.4 bits (176), Expect = 2e-12
Identities = 71/283 (25%), Positives = 121/283 (42%), Gaps = 43/283 (15%)
Query: 91 GEYGKLSEGDPKILERSKRLVSKINDFSQLKILPEVRDKLMEVISSESLLNKNLLDVKYN 150
GE ++E +PK ++ + + + D + E + + E + K D +
Sbjct: 76 GEDEAVAEEEPKKKKKKNKKLQQRGDTND-----EEDEVIAEEEEPKKKKKKQRKDTEAK 130
Query: 151 PKENNVQ--EFKKHLKPSPIQTTAIYQ-------TSKTLMD------PQLQVRLI----- 190
+E V+ E +K L+ + I T ++ T K++ + Q+Q + I
Sbjct: 131 SEEEEVEDKEEEKKLEETSIMTNKTFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMM 190
Query: 191 ------AAETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQV 244
AA TGSGKT+A+LIP V+ L R + + + +++ PT EL Q
Sbjct: 191 GEDVLGAARTGSGKTLAFLIPAVELLYRVKFTPRNGTGV--------LVICPTRELAIQS 242
Query: 245 YQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRI 304
Y +L K G K E L ++++V TPG++L + N I
Sbjct: 243 YGVAKELLKYHSQTVGKVIGGEKRKTEAEILAKGVNLLVATPGRLLD----HLENTNGFI 298
Query: 305 LSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFCSAT 347
+KFLVMDEAD +L++++ ED + + SAT
Sbjct: 299 FKNLKFLVMDEADRILEQNFEEDLKKILNLLPKTRQTSLFSAT 341
Score = 50.4 bits (119), Expect = 7e-06
Identities = 23/59 (38%), Positives = 37/59 (61%), Gaps = 1/59 (1%)
Query: 504 FVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGR-MNQKGSVFII 561
F+++ +L+ T+V ARG++F ++V YD P+ P D +HRVGRT R KG ++
Sbjct: 446 FIKAETGILLCTNVAARGLDFPHVDWIVQYDPPDNPTDYIHRVGRTARGEGAKGKALLV 504
>CE11402 [A] KOG0334 RNA helicase
Length = 995
Score = 70.9 bits (172), Expect = 5e-12
Identities = 89/383 (23%), Positives = 158/383 (41%), Gaps = 78/383 (20%)
Query: 192 AETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSKL 251
AET +GKT A+ +P++D + R + E + D + ++IL PT EL Q+++ +
Sbjct: 425 AETSAGKTAAFGLPIIDKILRMDEETRNKARQDDGPL--ALILAPTRELAAQIHEALRTY 482
Query: 252 EPALGMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQVKFL 311
+ S + ++ DI++ T G+I+ S ++ L ++FL
Sbjct: 483 CQNTDIIVLLSYGQSDRARSLNEIRNGCDILIGTCGRIMDFTVKSHIS-----LLHLRFL 537
Query: 312 VMDEADTLLDKSWVEDSYSTIKHM-QNLNHVLFCSATIPKEFQKTITRLFPTVGVIASPN 370
V DEAD LL + + H+ + F + ++ T +V +A+
Sbjct: 538 VFDEADRLLQ----DMKKDPLGHLGAIIKDAGFMESAATRQTIMTSATFNASVMTVANEL 593
Query: 371 LHKINHKNQI-----------KLINADMAPYKG--SKTKALAQILYSINRDNIDPGFEKR 417
+ ++ ++++ K +N + KG K L +IL + N++ G +
Sbjct: 594 MKRLPGQDEMIKIVLANGRLSKRVNLEFFECKGLAEKNAKLREIL----KQNVN-GKTLK 648
Query: 418 VVIFVNEKENVPLVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKV 477
+IFV +K+ A KL + G L G+ S + R + I F KS +V
Sbjct: 649 TIIFVQKKDQCDACAAKLTSG-GMLAQTLHGDRSQDMREKLINDF----------KSNRV 697
Query: 478 TTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPN 537
+LVTTD+L+RGI+ V+ +D+P+
Sbjct: 698 --------------------------------NLLVTTDLLSRGIDVSDLDRVINFDLPD 725
Query: 538 TPVD-----LVHRVGRTGRMNQK 555
D +HR GRTGR +K
Sbjct: 726 GDPDQGADTFIHRAGRTGRTGRK 748
>Hs8922886 [A] KOG0332 ATP-dependent RNA helicase
Length = 478
Score = 70.5 bits (171), Expect = 7e-12
Identities = 99/436 (22%), Positives = 178/436 (40%), Gaps = 104/436 (23%)
Query: 164 KPSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRTEME------N 217
+PS IQ A+ L +P Q + +++G+GKT A+++ ++ ++ ++ +
Sbjct: 113 RPSKIQENAL---PMMLAEPP-QNLIAQSQSGTGKTAAFVLAMLSRVEPSDRYPQCLCLS 168
Query: 218 PSWETLKDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKG 277
P++E + L T +++EQ+ + +L+ A + K + G
Sbjct: 169 PTYE-----------LALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISE------- 210
Query: 278 RIDIMVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQN 337
I++ TPG +L + P +I K V+DEAD ++ +D I+ M
Sbjct: 211 --QIVIGTPGTVLDWCSKLKFIDPKKI----KVFVLDEADVMIATQGHQDQSIRIQRMLP 264
Query: 338 LN-HVLFCSATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQ----IKLINADMAPYKG 392
N +L SAT K ++ P PN+ K+ + + IK + +
Sbjct: 265 RNCQMLLFSATFEDSVWKFAQKVVP------DPNVIKLKREEETLDTIKQYYV-LCSSRD 317
Query: 393 SKTKALAQILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSV 452
K +AL + +I + +IF + ++ +A +L+ + GH V L+G V
Sbjct: 318 EKFQALCNLYGAITI--------AQAMIFCHTRKTASWLAAELSKE-GHQVALLSGEMMV 368
Query: 453 EERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVL 512
E+R I E F E KVL
Sbjct: 369 EQRAAVI------------------------------------------ERFREGKEKVL 386
Query: 513 VTTDVLARGINFRGCRYVVLYDIP----NTPVD--LVHRVGRTGRMNQKG-SVFIITGKR 565
VTT+V ARGI+ V+ +D+P P + +HR+GRTGR ++G +V ++ K
Sbjct: 387 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 446
Query: 566 VKNWVKAIPSIVSKNV 581
N + I +K +
Sbjct: 447 SMNILNRIQEHFNKKI 462
>At2g45810 [A] KOG0326 ATP-dependent RNA helicase
Length = 528
Score = 70.5 bits (171), Expect = 7e-12
Identities = 70/261 (26%), Positives = 112/261 (42%), Gaps = 52/261 (19%)
Query: 118 SQLKILPEVRDKLMEVISSESLLNKNLLD----VKYNPKENNVQ----------EFKKHL 163
+QL P D++ + + SE++ + N D +K P++N Q EF+ +
Sbjct: 101 AQLPGDPSYIDEVEKTVQSEAISDSNNEDWKATLKLPPRDNRYQTEDVTATKGNEFEDYF 160
Query: 164 ---------------KPSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVD 208
KPSPIQ +I L + R A+ G+GKT A+ IP
Sbjct: 161 LKRDLLRGIYEKGFEKPSPIQEESI---PIALTGSDILAR---AKNGTGKTGAFCIPT-- 212
Query: 209 YLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSY 268
L++ + EN +++++IL+PT EL Q Q +L L + G+S
Sbjct: 213 -LEKIDPENN---------VIQAVILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSL 262
Query: 269 KGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDS 328
+ + L + ++V TPG+IL L + +L LVMDEAD LL +
Sbjct: 263 RDDIMRLYQPVHLLVGTPGRILDLAKKGVC-----VLKDCAMLVMDEADKLLSVEFQPSI 317
Query: 329 YSTIKHMQNLNHVLFCSATIP 349
I+ + +L SAT P
Sbjct: 318 EELIQFLPESRQILMFSATFP 338
>YGL171w [A] KOG0344 ATP-dependent RNA helicase
Length = 564
Score = 70.1 bits (170), Expect = 9e-12
Identities = 93/404 (23%), Positives = 156/404 (38%), Gaps = 84/404 (20%)
Query: 189 LIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTV 248
L TGSGKT+A+LIPLV + K A ++ +I+ PT EL Q++
Sbjct: 163 LACGPTGSGKTLAFLIPLVQQIIDD----------KQTAGLKGLIISPTKELANQIFIEC 212
Query: 249 SKLEPALGMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQV 308
KL SYK F+E + P ++ L ++++S
Sbjct: 213 FKL---------------SYKIFLEKKR---------PLQVALLSKSLGAKLKNKVVSDK 248
Query: 309 KFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFCSATIPKEFQKTITRLFPTV-GVIA 367
K+ ++ L ++ + + + H++F A K F KT +
Sbjct: 249 KYDIIISTPLRL----IDVVKNEALDLSKVKHLIFDEAD--KLFDKTFVEQSDDILSACR 302
Query: 368 SPNLHKINHKNQIKLINADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIFVNEKEN 427
P+L K A + + + +I SI D + RV+I E N
Sbjct: 303 EPSLRK--------------AMFSATIPSNVEEIAQSIMMDPV------RVIIGHKEAAN 342
Query: 428 VPLVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPP--KKMTTRKSEKVTTENTVTM 485
+ + GN+ E +L I+ + K E +T +
Sbjct: 343 TNI----------EQKLIFCGNE--EGKLIAIRQLVQEGEFKPPIIIFLESITRAKALYH 390
Query: 486 KIPNSNIVIEEIPEDN---------EAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIP 536
++ I ++ I + E F L L+ TDVLARGI+F+G V+ YD+P
Sbjct: 391 ELMYDRINVDVIHAERTALQRDRIIERFKTGELWCLICTDVLARGIDFKGVNLVINYDVP 450
Query: 537 NTPVDLVHRVGRTGRMNQKGSVFIITGKRVKNWVKAIPSIVSKN 580
+ VHR+GRTGR + G K+ +K I +++ ++
Sbjct: 451 GSSQAYVHRIGRTGRGGRSGKAITFYTKQDSVAIKPIINVMKQS 494
>Hs6005743 [A] KOG0332 ATP-dependent RNA helicase
Length = 479
Score = 70.1 bits (170), Expect = 9e-12
Identities = 101/437 (23%), Positives = 177/437 (40%), Gaps = 106/437 (24%)
Query: 164 KPSPIQTTAIYQTSKTLMDPQLQVRLIA-AETGSGKTMAYLIPLVDYLKRTEME------ 216
+PS IQ A+ LM + LIA +++G+GKT A+++ ++ ++
Sbjct: 114 RPSKIQENAL-----PLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCL 168
Query: 217 NPSWETLKDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALK 276
+P++E + L T +++EQ+ + +L+ A + K + G
Sbjct: 169 SPTYE-----------LALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISE------ 211
Query: 277 GRIDIMVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQ 336
I++ TPG +L + P +I K V+DEAD ++ +D I+ M
Sbjct: 212 ---QIVIGTPGTVLDWCSKLKFIDPKKI----KVFVLDEADVMIATQGHQDQSIRIQRML 264
Query: 337 NLN-HVLFCSATIPKEFQKTITRLFPTVGVIASPNLHKINHKNQ----IKLINADMAPYK 391
N +L SAT K ++ P PN+ K+ + + IK + +
Sbjct: 265 PRNCQMLLFSATFEDSVWKFAQKVVP------DPNVIKLKREEETLDTIKQYYV-LCSSR 317
Query: 392 GSKTKALAQILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDS 451
K +AL + +I + +IF + ++ +A +L+ + GH V L+G
Sbjct: 318 DEKFQALCNLYGAITI--------AQAMIFCHTRKTASWLAAELSKE-GHQVALLSGEMM 368
Query: 452 VEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKV 511
VE+R I E F E KV
Sbjct: 369 VEQRAAVI------------------------------------------ERFREGKEKV 386
Query: 512 LVTTDVLARGINFRGCRYVVLYDIP----NTPVD--LVHRVGRTGRMNQKG-SVFIITGK 564
LVTT+V ARGI+ V+ +D+P P + +HR+GRTGR ++G +V ++ K
Sbjct: 387 LVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSK 446
Query: 565 RVKNWVKAIPSIVSKNV 581
N + I +K +
Sbjct: 447 HSMNILNRIQEHFNKKI 463
>SPAC823.08c [A] KOG0330 ATP-dependent RNA helicase
Length = 465
Score = 69.7 bits (169), Expect = 1e-11
Identities = 85/343 (24%), Positives = 144/343 (41%), Gaps = 43/343 (12%)
Query: 165 PSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETLK 224
P+PIQ AI +++ + + L A+TGSGKT A+ +P++ L NPS
Sbjct: 69 PTPIQQEAI----PVVLNKRDVIGL--AQTGSGKTAAFALPVIQEL----WNNPS----- 113
Query: 225 DKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRIDIMVT 284
+++L PT EL Q+ + + ++G+ + G AL + ++V
Sbjct: 114 ---PFFAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVC 170
Query: 285 TPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFC 344
TPG+++ + N L +K+L+MDEAD LLD + +K + + L
Sbjct: 171 TPGRLMD----HLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHERRTLLF 226
Query: 345 SATIPKEFQK-TITRLFPTVGVIASPNLHKINHKNQIKLINADMAPYKGSKTKALAQILY 403
SAT+ + +K L V V S ++ Q L P+K T ++Y
Sbjct: 227 SATMTSKVEKLQRASLHQPVRVAVSSKFSTVDTLIQRYL----FFPFKHKDT----YLVY 278
Query: 404 SINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSVEERLEKIKPFM 463
+N ++IF + +A L G + L G S RL + F
Sbjct: 279 LVNE-----LAGNSIIIFARTVNDTQRLAI-LLRTLGFSAIPLHGQLSQSNRLGALNKF- 331
Query: 464 DPPKKMTTRKSEKVTTENTVTMKIPNSNIVIE-EIPEDNEAFV 505
K R + T + IP ++VI +IP D++A++
Sbjct: 332 ----KSGARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAYI 370
>7294824 [K] KOG4284 DEAD box protein
Length = 1028
Score = 69.7 bits (169), Expect = 1e-11
Identities = 97/436 (22%), Positives = 182/436 (41%), Gaps = 91/436 (20%)
Query: 137 ESLLNKNLLDVKYNPKENNVQEFKKHLKPSPIQTTAIYQTSKTLMDPQLQVRLIAAETGS 196
E L +NLL+ K NN + P+ IQ AI + MD +I +++G+
Sbjct: 29 ELRLYRNLLN---GLKRNNF------VTPTKIQAAAI-PMALAKMD-----LIIQSKSGT 73
Query: 197 GKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSKLEPALG 256
GKT+ Y+I +V + NP+ ++I++PT EL QV T L
Sbjct: 74 GKTLIYVIAVV------QSFNPNINQ------PHAMIVVPTRELAIQVQDTFFHL----- 116
Query: 257 MHTYKWDAGSSYKGFVEALKGR-----IDIMVTTPGKILSLFNISMVNRPDRILSQVKFL 311
+++ S++ G + K R +++ TPG++L L+ + + +S+++ L
Sbjct: 117 CKSFRDFKCSAFIGGTDVAKDRKRMNESRVIIGTPGRLLHLYENRVFD-----VSKLRLL 171
Query: 312 VMDEADTLLDKSWVEDSYS-TIKHMQNLNHVLFCSATIPKEFQKTITRLFPTVGVIASPN 370
V+DEAD L ++ + S I+ M ++ CSAT + + + + V+ P
Sbjct: 172 VLDEADQLYQTKSLQHTVSKLIEAMPKNRQIIACSATYDQNLDERLAK------VMDKPM 225
Query: 371 LHKINHKNQIKLINADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIFVNEKENVPL 430
L + + + L + Q +Y + + N V E
Sbjct: 226 LISNSERATVLL--------------GIRQFVYELPQQNNS----------VEEMRLKLQ 261
Query: 431 VATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNS 490
+ ++ NQ ++ + S + R + K ++ T + + + +
Sbjct: 262 ILGQIFNQLPYEQAIIFA--SSQMRADSYKNYL---------------TASGIDCHLISG 304
Query: 491 NIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTG 550
+ E E + T+++LV TD++ARG++ V+ D P V +HR+GR G
Sbjct: 305 AMEQSERLHVFEGYRNFTMRILVATDLMARGVDSPHANLVINIDPPQDHVTYLHRIGRAG 364
Query: 551 RMNQKG-SVFIITGKR 565
R KG ++ I K+
Sbjct: 365 RFGSKGIAITFIASKK 380
>CE03025 [A] KOG0329 ATP-dependent RNA helicase
Length = 425
Score = 69.3 bits (168), Expect = 2e-11
Identities = 97/404 (24%), Positives = 157/404 (38%), Gaps = 91/404 (22%)
Query: 192 AETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQV---YQTV 248
A++G GKT ++I + L+ + E V + + T EL Q+ Y+
Sbjct: 85 AKSGMGKTAVFVITTLQQLEPVDGE------------VSVVCMCHTRELAFQISKEYERF 132
Query: 249 SKLEPALGMHTYKWDAGSSYKGFVEALKGRID-IMVTTPGKILSLFNISMVNRPDRILSQ 307
SK P G+ + G + K E L I+V TPG++L+L + L +
Sbjct: 133 SKYLP--GVKVAVFFGGMAIKKDEERLANDCPHIVVGTPGRMLALARSGKLK-----LDK 185
Query: 308 VKFLVMDEADTLL-DKSWVEDSYSTIKHMQNLNHVLFCSATIPKEFQKTITRLFPT---- 362
VK+ V+DE D ++ D D +K V+ SAT+PKE + R
Sbjct: 186 VKYFVLDECDKMIGDADMRRDVQEIVKMTPQQKQVMMFSATLPKELRTVCKRFMQDPMEV 245
Query: 363 -VGVIASPNLHKINHKNQIKLINADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIF 421
V A LH + ++ +KL A+ K + L +L ++ + +VVIF
Sbjct: 246 YVDDEAKLTLHGL-QQHYVKLKEAE-------KNRRLLNLLDALEFN--------QVVIF 289
Query: 422 VNEKENVPLVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTEN 481
V + + L Q +A+ + EERL + + F D K+
Sbjct: 290 VKAVKRCEALHQLLTEQ-NFPSIAIHRQMAQEERLSRYQAFKDFQKR------------- 335
Query: 482 TVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVD 541
+LV TD+ RG++ V YD+P
Sbjct: 336 -----------------------------ILVATDLFGRGMDIERVNIVFNYDMPEDSDS 366
Query: 542 LVHRVGRTGRMNQKGSVFIITGKRVKNWVKAIPSIVSK-NVSIS 584
+HRV R GR KG IT +N K + S+ + ++SI+
Sbjct: 367 YLHRVARAGRFGTKG--LAITFVSDENDAKTLNSVQDRFDISIT 408
>CE29051 [A] KOG0335 ATP-dependent RNA helicase
Length = 1016
Score = 68.2 bits (165), Expect = 3e-11
Identities = 53/170 (31%), Positives = 88/170 (51%), Gaps = 16/170 (9%)
Query: 154 NNVQEFKKHLKPSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRT 213
+N++ K + +P+PIQ + + +M V A TGSGKT+A+LIP V +K
Sbjct: 712 DNLKRMKMN-RPTPIQRASFFP----IMHGDDVVA--CAHTGSGKTLAFLIPFV--IKLM 762
Query: 214 EMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVE 273
E + +K R +I+ PT ELV Q + T +L G+ G S V+
Sbjct: 763 EEFEKDRDVTDEKPSPRLLIVAPTRELVNQTFTTARQLTYETGLKCGLAFGGYSRNANVQ 822
Query: 274 ALK--GRIDIMVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLD 321
L+ +++I+V T G++ N V+ LS++K++V+DEAD ++D
Sbjct: 823 HLRSFSQLNILVATMGRLQDFVNAGEVS-----LSKMKYIVLDEADRMVD 867
>Hs14251212 [K] KOG4284 DEAD box protein
Length = 824
Score = 67.8 bits (164), Expect = 4e-11
Identities = 93/408 (22%), Positives = 165/408 (39%), Gaps = 99/408 (24%)
Query: 164 KPSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETL 223
+PSP+Q AI + +D ++ A++G+GKT + +D L +EN S + L
Sbjct: 84 RPSPVQLKAI-PLGRCGLD-----LIVQAKSGTGKTCVFSTIALDSLV---LENLSTQIL 134
Query: 224 KDKAIVRSIILLPTHELVEQVYQTVSKLEPAL-GMHTYKWDAGSSYKGFVEALKGRIDIM 282
IL PT E+ Q++ ++ + + G+ + + G+ LK + I
Sbjct: 135 ---------ILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLK-KCHIA 184
Query: 283 VTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDK-------SWVEDSYSTIKHM 335
V +PG+I L + +N ++ ++DEAD LL++ +W+ S K M
Sbjct: 185 VGSPGRIKQLIELDYLNP-----GSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQM 239
Query: 336 QNLNHVLFCSATIPKEFQKTITRLF--PTVGVIASPNLHKINHKNQIKLINADMAPYK-- 391
L SAT P+ +T+ PT + S + I K K++N+ +K
Sbjct: 240 ------LAVSATYPEFLANALTKYMRDPTFVRLNSSDPSLIGLKQYYKVVNSYPLAHKVF 293
Query: 392 GSKTKALAQILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDS 451
KT+ L ++ I + + ++F N +A L+++ G ++GN +
Sbjct: 294 EEKTQHLQELFSRIPFN--------QALVFSNLHSRAQHLADILSSK-GFPAECISGNMN 344
Query: 452 VEERLE---KIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVEST 508
+RL+ K+K F
Sbjct: 345 QNQRLDAMAKLKHF---------------------------------------------H 359
Query: 509 LKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKG 556
+VL++TD+ +RGI+ VV D+P +HR+GR GR G
Sbjct: 360 CRVLISTDLTSRGIDAEKVNLVVNLDVPLDWETYMHRIGRAGRFGTLG 407
>At1g16280 [A] KOG0340 ATP-dependent RNA helicase
Length = 491
Score = 67.8 bits (164), Expect = 4e-11
Identities = 55/192 (28%), Positives = 89/192 (45%), Gaps = 24/192 (12%)
Query: 164 KPSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETL 223
KP+P+QT + K L + L A+TGSGKT A+ +P++ L
Sbjct: 80 KPTPVQTHCV---PKILAGRDV---LGLAQTGSGKTAAFALPILHRLA------------ 121
Query: 224 KDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRIDIMV 283
+D V ++++ PT EL Q+ + L L + G +L R I++
Sbjct: 122 EDPYGVFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSLVSRPHIVI 181
Query: 284 TTPGKILSLFNISMVNRPD--RILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHV 341
TTPG+I + + N PD + S+ KFLV+DEAD +LD + ++ + + +
Sbjct: 182 TTPGRI----KVLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCLPKSRQT 237
Query: 342 LFCSATIPKEFQ 353
L SAT+ Q
Sbjct: 238 LLFSATMTSNLQ 249
Score = 51.6 bits (122), Expect = 3e-06
Identities = 29/65 (44%), Positives = 38/65 (57%), Gaps = 1/65 (1%)
Query: 504 FVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKG-SVFIIT 562
F + +L+ TDV +RG++ V+ YDIP P D VHRVGRT R + G +V IIT
Sbjct: 348 FKSGKVPILLATDVASRGLDIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVSIIT 407
Query: 563 GKRVK 567
VK
Sbjct: 408 ETDVK 412
>At5g62190 [A] KOG0331 ATP-dependent RNA helicase
Length = 671
Score = 67.0 bits (162), Expect = 7e-11
Identities = 55/174 (31%), Positives = 88/174 (49%), Gaps = 16/174 (9%)
Query: 192 AETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRS---IILLPTHELVEQVYQTV 248
A TG GKT+A+++P+++ L N ++ + RS ++LLPT EL +QV
Sbjct: 140 ARTGQGKTLAFVLPILESLV-----NGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADF 194
Query: 249 SKLEPALGMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQV 308
+LG+ + G SY LK +DI+V TPG+I + R + S +
Sbjct: 195 DAYGGSLGLSSCCLYGGDSYPVQEGKLKRGVDIVVGTPGRIK-----DHIERQNLDFSYL 249
Query: 309 KFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHV--LFCSATIPKEFQKTITRLF 360
+F V+DEAD +L +VED + +++ V L SAT+P + K I+ F
Sbjct: 250 QFRVLDEADEMLRMGFVEDVELILGKVEDSTKVQTLLFSATLP-SWVKNISNRF 302
>SPAC17G6.14c [A] KOG0329 ATP-dependent RNA helicase
Length = 434
Score = 66.6 bits (161), Expect = 1e-10
Identities = 85/376 (22%), Positives = 145/376 (37%), Gaps = 82/376 (21%)
Query: 189 LIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQV---Y 245
L A++G GKT +++ + ++ + E V ++L T EL Q+ Y
Sbjct: 92 LCQAKSGMGKTAVFVLSTLQQIEPVDGE------------VSVLVLCHTRELAFQIKNEY 139
Query: 246 QTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRID---IMVTTPGKILSLFNISMVNRPD 302
SK P + T + G + K +EA K + I+V TPG++ +L ++
Sbjct: 140 ARFSKYLP--DVRTAVFYGGINIKQDMEAFKDKSKSPHIVVATPGRLNALVREKILK--- 194
Query: 303 RILSQVKFLVMDEADTLLDK-SWVEDSYSTIKHMQNLNHVLFCSATIPKEFQKTITRLFP 361
++ VK V+DE D LL+ D + V+ SAT+ E + +
Sbjct: 195 --VNSVKHFVLDECDKLLESVDMRRDIQEVFRATPPQKQVMMFSATLSNEIRPICKKFMQ 252
Query: 362 TVGVIASPNLHKIN-HKNQIKLINADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVI 420
I + K+ H Q + + + +K + + +L S+ + +VVI
Sbjct: 253 NPLEIYVDDETKLTLHGLQQHYVKLE----EKAKNRKINDLLDSLEFN--------QVVI 300
Query: 421 FVNEKENVPLVATKLANQYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTE 480
FV + +L + + + G EER+++ K F D K+
Sbjct: 301 FVKSVSRANEL-DRLLRECNFPSICIHGGLPQEERIKRYKAFKDFDKR------------ 347
Query: 481 NTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPV 540
+ V TDV RGI+ V+ YD+P++P
Sbjct: 348 ------------------------------ICVATDVFGRGIDIERVNIVINYDMPDSPD 377
Query: 541 DLVHRVGRTGRMNQKG 556
+HRVGR GR KG
Sbjct: 378 SYLHRVGRAGRFGTKG 393
>7297629 [A] KOG0326 ATP-dependent RNA helicase
Length = 458
Score = 64.7 bits (156), Expect = 4e-10
Identities = 51/186 (27%), Positives = 86/186 (45%), Gaps = 23/186 (12%)
Query: 164 KPSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETL 223
+PSPIQ AI L + R A+ G+GKT AY IP+++ + T
Sbjct: 79 RPSPIQEAAI---PIALSGKDVLAR---AKNGTGKTGAYCIPVLEQIDPT---------- 122
Query: 224 KDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRIDIMV 283
K +++++++PT EL Q Q +L L + G+ K + + ++ +++
Sbjct: 123 --KDYIQALVMVPTRELALQTSQICIELAKHLDIRVMVTTGGTILKDDILRIYQKVQLII 180
Query: 284 TTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLF 343
TPG+IL L + + + +S + LV+DEAD LL + I + +L
Sbjct: 181 ATPGRILDLMDKKVAD-----MSHCRILVLDEADKLLSLDFQGMLDHVILKLPKDPQILL 235
Query: 344 CSATIP 349
SAT P
Sbjct: 236 FSATFP 241
>Hs9506931 [A] KOG0346 RNA helicase
Length = 547
Score = 63.9 bits (154), Expect = 6e-10
Identities = 48/167 (28%), Positives = 74/167 (43%), Gaps = 11/167 (6%)
Query: 189 LIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTV 248
L A TGSGKT AY IP++ L + P E VR ++L+PT EL Q +
Sbjct: 48 LARARTGSGKTAAYAIPMLQLLLHRKATGPVVE-----QAVRGLVLVPTKELARQAQSMI 102
Query: 249 SKLEP--ALGMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILS 306
+L A + A L + D++V TP +ILS + ++
Sbjct: 103 QQLATYCARDVRVANVSAAEDSVSQRAVLMEKPDVVVGTPSRILSHLQQDSL----KLRD 158
Query: 307 QVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFCSATIPKEFQ 353
++ LV+DEAD L + E+ S + H+ + SAT ++ Q
Sbjct: 159 SLELLVVDEADLLFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQ 205
>Hs20336298 [A] KOG0348 ATP-dependent RNA helicase
Length = 585
Score = 62.8 bits (151), Expect = 1e-09
Identities = 43/140 (30%), Positives = 77/140 (54%), Gaps = 11/140 (7%)
Query: 189 LIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTV 248
L+ ++TGSGKT+AY IP+V L+ E + ++ +++L+PT EL Q + TV
Sbjct: 272 LVRSQTGSGKTLAYCIPVVQSLQAMESK------IQRSDGPYALVLVPTRELALQSFDTV 325
Query: 249 SK-LEPALGMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQ 307
K L+P + G K L+ I+I+++TPG+++ + + + S+
Sbjct: 326 QKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVD----HIKSTKNIHFSR 381
Query: 308 VKFLVMDEADTLLDKSWVED 327
+++LV DEAD +LD + +D
Sbjct: 382 LRWLVFDEADRILDLGFEKD 401
>At1g59990 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 581
Score = 62.8 bits (151), Expect = 1e-09
Identities = 53/137 (38%), Positives = 72/137 (51%), Gaps = 12/137 (8%)
Query: 189 LIAAETGSGKTMAYLIPLVDYLKRT----EMENPSWETLKDKAIVRSIILLPTHELVEQV 244
++AAETGSGKT YL P++D L T E+ N K I S+IL P L EQV
Sbjct: 121 IVAAETGSGKTHGYLAPIIDQLTNTALDSEVTNREERPFPLKNI--SLILCPNVMLCEQV 178
Query: 245 YQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNIS-MVNRPDR 303
+ V+ L G + +A +G+ + L DI+V+TP +L+ NI NR
Sbjct: 179 VRMVNGLVDEDGNPLLRVEAVCGSQGWPDRLP---DIIVSTPAALLN--NIEPKRNRRLE 233
Query: 304 ILSQVKFLVMDEADTLL 320
L VK++V DEAD LL
Sbjct: 234 FLRCVKYVVFDEADMLL 250
>At2g07750 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 845
Score = 62.4 bits (150), Expect = 2e-09
Identities = 49/170 (28%), Positives = 86/170 (49%), Gaps = 11/170 (6%)
Query: 189 LIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVY--- 245
L+ A+TG+GK+MA+L+P ++ + + S + + A + +IL PT EL Q+
Sbjct: 416 LVKAKTGTGKSMAFLLPAIETVLKAMN---SGKGVHKVAPIFVLILCPTRELASQIAAEG 472
Query: 246 QTVSKLEPALGMHTYKWDAGSSYKGFVEALKGR-IDIMVTTPGKILSLFNISMVNRPDRI 304
+ + K +G+ T G+ ++ + L+ I++ TPG++L +I +
Sbjct: 473 KALLKNHDGIGVQTLI--GGTRFRLDQQRLESEPCQILIATPGRLLD--HIENKSGLTSR 528
Query: 305 LSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFCSATIPKEFQK 354
L +K ++DEAD LLD + D I + L SATIPKE ++
Sbjct: 529 LMALKLFIVDEADLLLDLGFKRDVEKIIDCLPRQRQSLLFSATIPKEVRR 578
>7297048 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 389
Score = 62.4 bits (150), Expect = 2e-09
Identities = 48/190 (25%), Positives = 87/190 (45%), Gaps = 27/190 (14%)
Query: 164 KPSPIQTTAIYQTSKTLMDPQLQVR--LIAAETGSGKTMAYLIPLVDYLKRTEMENPSWE 221
KPS IQ AI P ++ R + A++G+GKT + I ++ + + E
Sbjct: 38 KPSAIQQRAII--------PCVRGRDVIAQAQSGTGKTATFSIAILQQIDTSIRE----- 84
Query: 222 TLKDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRIDI 281
+++IL PT EL Q+ + V L + +H++ G++ + L+ +
Sbjct: 85 -------CQALILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILESGCHV 137
Query: 282 MVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHV 341
+V TPG++ M+NR +K V+DEAD +L + + + K + V
Sbjct: 138 VVGTPGRV-----YDMINRKVLRTQYIKLFVLDEADEMLSRGFKDQIQDVFKMLPPDVQV 192
Query: 342 LFCSATIPKE 351
+ SAT+P +
Sbjct: 193 ILLSATMPPD 202
Score = 54.7 bits (130), Expect = 4e-07
Identities = 29/90 (32%), Positives = 53/90 (58%), Gaps = 3/90 (3%)
Query: 470 TTRKSEKVTTENTV---TMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRG 526
T RK +++T E ++ T+ + ++ + + F + +VL+TTD+LARGI+ +
Sbjct: 264 TRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLITTDLLARGIDVQQ 323
Query: 527 CRYVVLYDIPNTPVDLVHRVGRTGRMNQKG 556
V+ YD+P+ + +HR+GR GR +KG
Sbjct: 324 VSLVINYDLPSNRENYIHRIGRGGRFGRKG 353
>SPAC1006.07 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 392
Score = 61.2 bits (147), Expect = 4e-09
Identities = 48/197 (24%), Positives = 91/197 (45%), Gaps = 27/197 (13%)
Query: 164 KPSPIQTTAIYQTSKTLMDPQLQVR--LIAAETGSGKTMAYLIPLVDYLKRTEMENPSWE 221
+PS IQ AI P L R L A++G+GKT + I ++ + + +
Sbjct: 41 RPSAIQQRAIM--------PILGERDVLAQAQSGTGKTATFSISVLQKIDTSLKQ----- 87
Query: 222 TLKDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRIDI 281
+++IL PT EL +Q+ + V L + + + G+ + + AL+ + +
Sbjct: 88 -------CQALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAALQAGVHV 140
Query: 282 MVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHV 341
+V TPG++ M+ R V+ V+DEAD +L + + + Y + + V
Sbjct: 141 VVGTPGRVHD-----MIQRRALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQLLPPTAQV 195
Query: 342 LFCSATIPKEFQKTITR 358
+ SAT+P++ + T+
Sbjct: 196 VLLSATMPQDVLEVTTK 212
Score = 52.0 bits (123), Expect = 2e-06
Identities = 25/65 (38%), Positives = 41/65 (62%), Gaps = 1/65 (1%)
Query: 504 FVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKG-SVFIIT 562
F + ++L+TTD+LARGI+ + V+ YD+P + +HR+GR GR +KG S+ +T
Sbjct: 304 FRTGSSRILITTDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVSINFVT 363
Query: 563 GKRVK 567
V+
Sbjct: 364 NDDVR 368
>CE27641 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 752
Score = 60.8 bits (146), Expect = 5e-09
Identities = 89/426 (20%), Positives = 166/426 (38%), Gaps = 39/426 (9%)
Query: 165 PSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPL-VDYLKRTEME--NPSWE 221
P Q ++T+ T + P + + G + A+ P Y+ + E N W
Sbjct: 234 PVAYQIDKKFKTAATCLYPAILCQNSGLGVNFGGSAAFKYPPGTQYVAVAQAEDGNLKWW 293
Query: 222 TLKDKAIVRS-----IILLPTHELVEQVYQTVSKLEPALG---MHTYKWDAGSSYKGFVE 273
+ ++ + S +IL PT ELV+Q +Q + L + AG + +
Sbjct: 294 SAAEQLSIDSSTPLCVILEPTRELVQQTFQNIQTFASVLDSPKIRCVTLAAGENMNQILR 353
Query: 274 ALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADT-LLDKSWVEDSYSTI 332
L+ DI+V TP ++ L + + ++F+V+DE D L K+ +I
Sbjct: 354 TLETGCDIVVGTPSRVFDLIHTGKL-----ATKNLQFVVIDEIDQFLAGKNNCAHQIESI 408
Query: 333 KHMQNL-------NHVLFCSATIPK-EFQKTITRLFPTVGVIASPNLHKINHKNQIKLIN 384
+ L V+ CSAT+ E + R I ++ + +
Sbjct: 409 FRVLPLVAQDGTRRQVIACSATLHNFEVCRFADRHMSFPQWIDLKGADCVSADVHHVVCH 468
Query: 385 ADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVV 444
D + K + Q+ + D++ G + R +K+ + L L Y +
Sbjct: 469 VDASEDKQWIRQMHQQV--HLEDDHVHDGDQIRPG--TTDKDTISLGTKILKGIYVVRAI 524
Query: 445 ALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAF 504
L+ K + K E +N ++ + + EE E F
Sbjct: 525 ---------HALQMDKAIVFCRTKQQCDHMEHFLQQNNLSAACLHGDRSAEERQSSLEGF 575
Query: 505 VESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKG-SVFIITG 563
+ ++ LV +DV+ARG++ +G +V+ +P+ VHR+GR GR + G S+ +++
Sbjct: 576 KKGIIRFLVCSDVVARGLDVQGVPFVISVTLPDEKSMYVHRIGRVGRAERMGLSISLVSE 635
Query: 564 KRVKNW 569
K W
Sbjct: 636 YEEKAW 641
>CE25531 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 508
Score = 60.5 bits (145), Expect = 7e-09
Identities = 49/188 (26%), Positives = 84/188 (44%), Gaps = 23/188 (12%)
Query: 164 KPSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETL 223
KPS IQ AI K + + A++G+GKT + I ++ L E
Sbjct: 48 KPSAIQQRAIPAILKA------RDVIAQAQSGTGKTATFSISVLQSLDTQVRET------ 95
Query: 224 KDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRIDIMV 283
+++IL PT EL Q+ + V L + + + G++ + L ++
Sbjct: 96 ------QALILSPTRELAVQIQKVVLALGDYMNVQCHACIGGTNLGEDIRKLDYGQHVVS 149
Query: 284 TTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLF 343
TPG++ M+ R + +K LV+DEAD +L+K + E Y +++ V+
Sbjct: 150 GTPGRVFD-----MIRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVVL 204
Query: 344 CSATIPKE 351
SAT+P E
Sbjct: 205 LSATLPHE 212
>SPBC776.09 [A] KOG0326 ATP-dependent RNA helicase
Length = 485
Score = 59.7 bits (143), Expect = 1e-08
Identities = 50/186 (26%), Positives = 83/186 (43%), Gaps = 23/186 (12%)
Query: 164 KPSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETL 223
+PSPIQ +I L + R A+ G+GKT A++IP ++ + +T
Sbjct: 66 RPSPIQEESI---PIALSGRDILAR---AKNGTGKTAAFVIPSLEKV----------DTK 109
Query: 224 KDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRIDIMV 283
K K ++++IL+PT EL Q Q L + + G++ + + L + I+V
Sbjct: 110 KSK--IQTLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDTVHIVV 167
Query: 284 TTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLF 343
TPG++L L + + S+ VMDEAD LL + + + +
Sbjct: 168 GTPGRVLDLAGKGVAD-----FSECTTFVMDEADKLLSPEFTPIIEQLLSYFPKNRQISL 222
Query: 344 CSATIP 349
SAT P
Sbjct: 223 YSATFP 228
>At1g12770_1 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 543
Score = 58.2 bits (139), Expect = 3e-08
Identities = 45/150 (30%), Positives = 80/150 (53%), Gaps = 8/150 (5%)
Query: 189 LIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAI-VRSIILLPTHELVEQVYQT 247
+I + TGSGKT+AYL+P++ + ++ S + DK ++++I+ P+ EL Q+ +
Sbjct: 151 VIQSYTGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVRE 210
Query: 248 VSK-LEPALGMHTYKWDAGSSYKGFVEAL-KGRIDIMVTTPGKILSLFNISMVNRPDRIL 305
V K L P + G++ EAL K + I+V TPG+I + ++
Sbjct: 211 VEKLLGPVHRRMVQQLVGGANRMRQEEALKKNKPAIVVGTPGRIAEISKGGKLH-----T 265
Query: 306 SQVKFLVMDEADTLLDKSWVEDSYSTIKHM 335
+FLV+DE D LL ++ ED + ++H+
Sbjct: 266 HGCRFLVLDEVDELLSFNFREDIHRILEHV 295
Score = 52.0 bits (123), Expect = 2e-06
Identities = 24/58 (41%), Positives = 35/58 (59%)
Query: 504 FVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKGSVFII 561
F +KVLVT ++ ARG++ C VV ++P V HR GRTGR+ +KG+V +
Sbjct: 453 FKNGEIKVLVTNELSARGLDVAECDLVVNLELPTDAVHYAHRAGRTGRLGRKGTVVTV 510
>Hs20551983 [A] KOG0345 ATP-dependent RNA helicase
Length = 325
Score = 57.4 bits (137), Expect = 6e-08
Identities = 71/249 (28%), Positives = 111/249 (44%), Gaps = 32/249 (12%)
Query: 190 IAAE--TGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQT 247
+AAE TGSGKT+A++IP+++ L R E E LK K+ V +II+ PT EL Q+ +
Sbjct: 49 VAAEAVTGSGKTLAFVIPILEILLRRE------EKLK-KSQVGAIIITPTRELAIQIDEV 101
Query: 248 VSKLEPAL-GMHTYKWDAGSSYKGFVEALKGR-IDIMVTTPGKILSLFNISMVNRP-DRI 304
+S W G + VE K + +I+V TPG++ +F
Sbjct: 102 LSHFTKHFPEFSQILWIGGRNPGEDVERFKQQGGNIIVATPGRLEDMFRRKAEGLDLASC 161
Query: 305 LSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFCSATIPKEFQKTITRLFPTVG 364
+ + LV+DEAD LLD + E S +TI +PK+ + T LF
Sbjct: 162 VRSLDVLVLDEADRLLDMGF-EASINTILEF------------LPKQRR---TGLFSATQ 205
Query: 365 VIASPNLHKINHKNQIKLI--NADMAPYKGSKTKALAQILYSINRDNIDPGFEKRVVIFV 422
NL + +N +++ +A KT + + Y + + D F + V
Sbjct: 206 TQEVENLVRAGLRNPVRVSVKEKGVAASSAQKTPSRLENYYMVCK--ADEKFNQLVHFLR 263
Query: 423 NEKENVPLV 431
N K+ LV
Sbjct: 264 NHKQEKHLV 272
>CE23814 [A] KOG0340 ATP-dependent RNA helicase
Length = 696
Score = 56.6 bits (135), Expect = 1e-07
Identities = 42/160 (26%), Positives = 72/160 (44%), Gaps = 19/160 (11%)
Query: 192 AETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSKL 251
A TG+GKT+A+ IP++ L D + ++IL PT EL Q+ + + L
Sbjct: 190 ARTGTGKTLAFAIPILQKLS------------VDPYGIYALILTPTRELAFQIAEQFTAL 237
Query: 252 EPALGMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPD---RILSQV 308
+ + G S L R ++V TPG++ L + PD ++ ++
Sbjct: 238 GKPITLKCSVIVGGRSLIHQARELSERPHVVVATPGRLADLIE----SDPDTIAKVFKKI 293
Query: 309 KFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFCSATI 348
+F V+DEAD +L+ + + + + L SATI
Sbjct: 294 QFFVLDEADRMLEGQYNDQLKPIFESISEKRQTLLLSATI 333
Score = 50.1 bits (118), Expect = 9e-06
Identities = 24/79 (30%), Positives = 43/79 (54%)
Query: 503 AFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKGSVFIIT 562
AF TL+V++ TDV +RG++ VV +++P P +HRVGR+ R + GS
Sbjct: 439 AFRSKTLQVIICTDVASRGLDIPHVDLVVNHNVPQCPKTYIHRVGRSARAGRFGSALSFV 498
Query: 563 GKRVKNWVKAIPSIVSKNV 581
+ ++A+ ++ K +
Sbjct: 499 TQYDVELLQAVEQVIGKKL 517
>7302399 [A] KOG0347 RNA helicase
Length = 813
Score = 55.8 bits (133), Expect = 2e-07
Identities = 29/84 (34%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 489 NSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGR 548
++N++ ++ ++ E F +S +L+ TDV ARG++ +V+ Y +P T + VHR GR
Sbjct: 576 HANMIQKQRLKNLERFRDSPTGLLIATDVAARGLDIPNVEHVIHYQVPRTSENYVHRSGR 635
Query: 549 TGRMNQKG-SVFIITGKRVKNWVK 571
T R N+ G +V + VK++VK
Sbjct: 636 TARANKHGITVMFMEPGEVKSYVK 659
>At3g16840 [A] KOG0347 RNA helicase
Length = 833
Score = 54.7 bits (130), Expect = 4e-07
Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 10/150 (6%)
Query: 191 AAETGSGKTMAYLIPLVDYL--------KRTEMENPSWETLKDKAIVRSIILLPTHELVE 242
AAETGSGKT+A+ +P++ L K ++ + +R++I+ PT EL
Sbjct: 235 AAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALIITPTRELAL 294
Query: 243 QVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPD 302
QV + + L + G + LK + +I+V TPG++ L + + +
Sbjct: 295 QVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVATPGRLWELMSAGEKHLVE 354
Query: 303 RILSQVKFLVMDEADTLLDKSWVEDSYSTI 332
L + F V+DEAD ++++ + S +
Sbjct: 355 --LHSLSFFVLDEADRMVERGHFRELQSIL 382
>YER172c [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily
Length = 2163
Score = 54.3 bits (129), Expect = 5e-07
Identities = 91/396 (22%), Positives = 162/396 (39%), Gaps = 69/396 (17%)
Query: 189 LIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTV 248
LI A TGSGKT L+ ++ L + NP + L A + + + P LV++ +
Sbjct: 518 LICAPTGSGKTNIALLTVLKAL--SHHYNPKTKKLNLSAF-KIVYIAPLKALVQEQVREF 574
Query: 249 SKLEPALGMHTYKW--DAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPD-RIL 305
+ LG+ + D+ S K E ++V+TP K ++I+ N + I+
Sbjct: 575 QRRLAFLGIKVAELTGDSRLSRKQIDET-----QVLVSTPEK----WDITTRNSNNLAIV 625
Query: 306 SQVKFLVMDEADTLLD------KSWVEDSYSTIKHMQNLNHVLFCSATIPKEFQKTITRL 359
V+ L++DE L D +S V ++ K+ Q ++ SAT+P
Sbjct: 626 ELVRLLIIDEIHLLHDDRGPVLESIVARTFWASKYGQEYPRIIGLSATLPNYEDVGRFLR 685
Query: 360 FPTVGVI----------ASPNLHKINHKNQIKLINADMAPYKGSKTKALAQILYSINRDN 409
P G+ S I +N +K + K ++L SIN N
Sbjct: 686 VPKEGLFYFDSSFRPCPLSQQFCGIKERNSLKKL-------KAMNDACYEKVLESINEGN 738
Query: 410 IDPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVA--LTGNDSVEERLEKIKP--FMDP 465
++++FV+ ++ AT L N++ + + LT ND+ +++ K + +DP
Sbjct: 739 -------QIIVFVHSRKETSRTATWLKNKFAEENITHKLTKNDAGSKQILKTEAANVLDP 791
Query: 466 PKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTDVLARGINFR 525
+ + T + + S + ED F + L+VLV T LA G+N
Sbjct: 792 SLRKLIESG--IGTHHAGLTRSDRS------LSED--LFADGLLQVLVCTATLAWGVNLP 841
Query: 526 GCRYVV----LYDIPN------TPVDLVHRVGRTGR 551
++ +Y +P D++ +GR GR
Sbjct: 842 AHTVIIKGTDVYSPEKGSWEQLSPQDVLQMLGRAGR 877
>Hs22054507 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 729
Score = 54.3 bits (129), Expect = 5e-07
Identities = 38/116 (32%), Positives = 56/116 (47%), Gaps = 9/116 (7%)
Query: 233 ILLPTHELVEQVYQTVSKLEPALGMHTYKWD-AGSSYKGFVEALKGRIDIMVTTPGKILS 291
IL PT EL Q++ + MHTY G + + L I+I+V TPG +L
Sbjct: 436 ILSPTRELAMQIFGGANTHH----MHTYGLIMGGDNTSAEAQKLANGINIIVATPGHLLD 491
Query: 292 LFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFCSAT 347
M N P + +++LV+DEAD +LD + E+ IK + H + SAT
Sbjct: 492 Y----MQNTPGFMYKNLQYLVIDEADRILDVGFEEELKQIIKLLPTCRHTMLLSAT 543
>At4g16630 [A] KOG0338 ATP-dependent RNA helicase
Length = 683
Score = 54.3 bits (129), Expect = 5e-07
Identities = 55/204 (26%), Positives = 85/204 (40%), Gaps = 23/204 (11%)
Query: 164 KPSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVD------YLKRTE-ME 216
KP+PIQ I Q + L +A TGSGK L+ L + YL T
Sbjct: 189 KPTPIQVQFIPQEWRDLC--------ASAITGSGKVSTRLMVLCNTEILFRYLTNTAAFA 240
Query: 217 NPSWETL----KDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFV 272
P+ E L K R +IL PT EL Q++ + L + G S +
Sbjct: 241 LPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQE 300
Query: 273 EALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTI 332
L+ DI+V TPG+++ SM L + L++DEAD LL + + +
Sbjct: 301 VVLRSMPDIVVATPGRMIDHLRNSM----SVDLDDLAVLILDEADRLLQTGFATEITELV 356
Query: 333 KHMQNLNHVLFCSATIPKEFQKTI 356
+ + SAT+ +E ++ +
Sbjct: 357 RLCPKRRQTMLFSATMTEEVKELV 380
>Hs17475661 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 240
Score = 53.1 bits (126), Expect = 1e-06
Identities = 33/106 (31%), Positives = 53/106 (49%), Gaps = 12/106 (11%)
Query: 456 LEKIKPFMDPPKKMTTRKSEKVTTENTVT-----MKIPNSNIVIEEIPEDNEAFVESTLK 510
LE K FM P ++ +K E + TV+ M ++V+ E + + +
Sbjct: 129 LEVTKKFMRDPIRILVKKEELTLKDFTVSAMHGDMDQKERDVVMRE-------YRSGSSR 181
Query: 511 VLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKG 556
VL+TTD+L RGI+ + V+ YD P + +HR+GR G+ KG
Sbjct: 182 VLITTDLLPRGIDVQQLSLVINYDPPTNRENYIHRIGRGGQFGHKG 227
>CE06825 [A] KOG0335 ATP-dependent RNA helicase
Length = 528
Score = 53.1 bits (126), Expect = 1e-06
Identities = 82/395 (20%), Positives = 144/395 (35%), Gaps = 91/395 (23%)
Query: 189 LIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVY--- 245
++ A TG GKT A+LIP ++ + N T +I +I+ T LV+Q++
Sbjct: 134 VVEAPTGIGKTYAFLIPAIEAALKNRQSNCFEYTKPSPSI---LIMASTSALVDQLFNRC 190
Query: 246 ------QTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVN 299
Q + +EP + K A + KG+ DI T GK+ +
Sbjct: 191 ELILGLQCMDNVEPIRDIKIDKLVANHPF------TKGQCDIAFCTIGKLKATIECG--- 241
Query: 300 RPDRILSQVKFLVMDEADTLLDK-------SWVEDSYSTIKHMQNLNHVLFCSATIPKEF 352
D L +K +++DEAD ++D +W+ D ++++NL F SAT K
Sbjct: 242 --DVCLDNLKTIILDEADKMIDNCAFGPDINWILDQLKE-ENLENLQSCFF-SATYNKNA 297
Query: 353 QKTITRLFPTV---------GVIASPNLHKINHKNQIKLINADMAPYKGSKTKALAQILY 403
TI + VI P + + +++ + I+
Sbjct: 298 NGTIALTVLQMRMLGEDDPWSVIICPRMSGYITQRVVRVGRGRPNDIRSHPWVIKMGIIR 357
Query: 404 SINRDNI-------DPGFEKRVVIFVNEKENVPLVATKLANQYGHDVVALTGNDSVEERL 456
+ D++ D + + + IF + V V T Q G++
Sbjct: 358 KLIDDDLKETGCSKDGPYNETIAIFCETVQRVTQV-TMALRQLGYN-------------- 402
Query: 457 EKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLKVLVTTD 516
P M T+ + VT + KI +V T+
Sbjct: 403 ------FKPVCSMITKNQQLVTVNDLEFRKIHG----------------------VVCTN 434
Query: 517 VLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGR 551
+LARGI+ ++ ++ ++ HR+GR GR
Sbjct: 435 ILARGIDVSSVKHTIIMEMSADFDTYKHRIGRVGR 469
>CE27336 [A] KOG0334 RNA helicase
Length = 436
Score = 52.8 bits (125), Expect = 1e-06
Identities = 27/52 (51%), Positives = 32/52 (60%)
Query: 504 FVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQK 555
F +KVLV T V ARG++ + VV YD PN D VHRVGRTGR +K
Sbjct: 297 FKTGVIKVLVATSVAARGLDVKNLILVVNYDCPNHYEDYVHRVGRTGRAGRK 348
>Hs4826686 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 740
Score = 52.0 bits (123), Expect = 2e-06
Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 496 EIPEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQK 555
E ++ E F + ++ L+ TDV ARGI+ G YV+ +P+ + VHR+GR GR +
Sbjct: 553 ERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERM 612
Query: 556 G-SVFIITGKRVKNW 569
G ++ ++ ++ K W
Sbjct: 613 GLAISLVATEKEKVW 627
>ECU10g1680 [A] KOG0343 RNA Helicase
Length = 452
Score = 51.6 bits (122), Expect = 3e-06
Identities = 42/170 (24%), Positives = 81/170 (46%), Gaps = 16/170 (9%)
Query: 191 AAETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSK 250
+++TG+GKT+A+L+P + L + +++ PT EL Q++ +S+
Sbjct: 47 SSQTGTGKTLAFLVPTLQRLVSLGWGGGDG--------LGCLVITPTRELALQIFDVLSR 98
Query: 251 LEPALGMHTYKWDAGSSYKGFVEALK-GRIDIMVTTPGKILSLFNISMVNRPDRILSQVK 309
+ + T G + E LK +++I+V TPG++L + P + V+
Sbjct: 99 IAKYTVLSTGLIMGGLEAED--ELLKVNQMNILVCTPGRLLQ----HLQENPYLSTANVQ 152
Query: 310 FLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLFCSATIPKEFQKTITRL 359
L++DEAD +++ + E ++++ L SAT PK I +L
Sbjct: 153 ILILDEADKMIEMGFKEVLEDILEYIPQKKQTLLFSAT-PKASTARILKL 201
>Hs9506609 [A] KOG0340 ATP-dependent RNA helicase
Length = 257
Score = 51.2 bits (121), Expect = 4e-06
Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 16/131 (12%)
Query: 192 AETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVYQTVSKL 251
A+TGSGKT A+++P++ L +D + ++L PT EL Q+ + L
Sbjct: 46 AKTGSGKTAAFVLPILQKLS------------EDPYGIFCLVLTPTRELAYQIAERFRVL 93
Query: 252 EPALGMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVNRPDRILSQVKFL 311
LG+ G L + +++ TPG++ S + +++FL
Sbjct: 94 GKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATPGRLADHLRSSNTFS----IKKIRFL 149
Query: 312 VMDEADTLLDK 322
VMDEAD LL++
Sbjct: 150 VMDEADRLLEQ 160
>CE15167 [A] KOG0335 ATP-dependent RNA helicase
Length = 340
Score = 51.2 bits (121), Expect = 4e-06
Identities = 49/184 (26%), Positives = 79/184 (42%), Gaps = 32/184 (17%)
Query: 189 LIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETLKDKAIVRSIILLPTHELVEQVY--- 245
++ A TG GKT A+LIP ++ N T +I +I+ T LV+Q++
Sbjct: 34 VVEAPTGIGKTYAFLIPAIEAALENRQSNCFESTKPSPSI---LIMASTSALVDQLFNRC 90
Query: 246 ------QTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRIDIMVTTPGKILSLFNISMVN 299
Q + +EP + K A + KG+ DI T GK+ +
Sbjct: 91 ELILGLQCMDNVEPIRDIKIDKLVANHPF------TKGQCDIAFCTIGKLKATIECG--- 141
Query: 300 RPDRILSQVKFLVMDEADTLLDK-------SWVEDSYSTIKHMQNLNHVLFCSATIPKEF 352
D L +K +++DEAD ++D +W+ D ++++NL F SAT K
Sbjct: 142 --DVCLDNLKTIILDEADKMIDNCAFVPDINWILDQLKE-ENLENLQSCFF-SATYNKNA 197
Query: 353 QKTI 356
TI
Sbjct: 198 NGTI 201
>At5g60990 [A] KOG0330 ATP-dependent RNA helicase
Length = 454
Score = 51.2 bits (121), Expect = 4e-06
Identities = 25/78 (32%), Positives = 37/78 (47%)
Query: 504 FVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKGSVFIITG 563
F +LV TDV +RG++ V+ YDIP D +HRVGRT R + G +
Sbjct: 304 FKAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVN 363
Query: 564 KRVKNWVKAIPSIVSKNV 581
+ W I ++ K +
Sbjct: 364 QYELEWYIQIEKLIGKKL 381
>At4g00660 [A] KOG0326 ATP-dependent RNA helicase
Length = 499
Score = 51.2 bits (121), Expect = 4e-06
Identities = 49/186 (26%), Positives = 79/186 (42%), Gaps = 29/186 (15%)
Query: 164 KPSPIQTTAIYQTSKTLMDPQLQVRLIAAETGSGKTMAYLIPLVDYLKRTEMENPSWETL 223
+PSPIQ +I + T D L A+ G+GKT A+ IP+++ + +
Sbjct: 153 RPSPIQEESI-PIALTGRDI-----LARAKNGTGKTAAFCIPVLEKIDQ----------- 195
Query: 224 KDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRIDIMV 283
D +++ +L + Q +L L + G+S K + L + ++V
Sbjct: 196 -DNNVIQGNCVL------DHTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLV 248
Query: 284 TTPGKILSLFNISMVNRPDRILSQVKFLVMDEADTLLDKSWVEDSYSTIKHMQNLNHVLF 343
TPG+IL L + +L LVMDEAD LL + + I + +L
Sbjct: 249 GTPGRILDLTKKGVC-----VLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILM 303
Query: 344 CSATIP 349
SAT P
Sbjct: 304 FSATFP 309
>ECU10g0690 [A] KOG0345 ATP-dependent RNA helicase
Length = 463
Score = 50.8 bits (120), Expect = 6e-06
Identities = 29/73 (39%), Positives = 39/73 (52%), Gaps = 5/73 (6%)
Query: 511 VLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKGSVFIITGKRVKNWV 570
+L TDV ARGI+FRG VV +D+P +VHR GRT R KG + + +V
Sbjct: 289 LLFCTDVAARGIDFRGVDLVVHFDVPKEYSSIVHRSGRTARNGSKGESVLFVMPNERAYV 348
Query: 571 -----KAIPSIVS 578
K IP++ S
Sbjct: 349 EFLKLKGIPAVES 361
>ECU07g1060 [A] KOG0344 ATP-dependent RNA helicase
Length = 416
Score = 50.1 bits (118), Expect = 9e-06
Identities = 33/92 (35%), Positives = 46/92 (49%), Gaps = 5/92 (5%)
Query: 473 KSEKVTTENTVTMKIPNSNIVIEEIPEDNEAFVESTLK---VLVTTDVLARGINFRGCRY 529
K EK T ++M + S + E+ E LK L TTD L+RGI+F R
Sbjct: 285 KDEK--TGEALSMLLGKSAVYREDQEGSGEVLDGFRLKKIWYLFTTDSLSRGIDFYNIRS 342
Query: 530 VVLYDIPNTPVDLVHRVGRTGRMNQKGSVFII 561
V+ YD+P+T VHR+GR R Q ++ I
Sbjct: 343 VINYDLPSTKTQFVHRIGRINRNCQGQKIYTI 374
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.315 0.133 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,031,581
Number of Sequences: 60738
Number of extensions: 1361602
Number of successful extensions: 5411
Number of sequences better than 1.0e-05: 208
Number of HSP's better than 0.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 133
Number of HSP's that attempted gapping in prelim test: 4877
Number of HSP's gapped (non-prelim): 431
length of query: 584
length of database: 30,389,216
effective HSP length: 112
effective length of query: 472
effective length of database: 23,586,560
effective search space: 11132856320
effective search space used: 11132856320
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)