ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII0612 good B KOG4140 Chromatin structure and dynamics Nuclear protein Ataxin-7
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII0612 216218 214746 -491
(491 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YGL066w [B] KOG4140 Nuclear protein Ataxin-7 274 3e-73
SPCC126.04c [B] KOG4140 Nuclear protein Ataxin-7 104 3e-22
Hs20543063 [B] KOG4140 Nuclear protein Ataxin-7 54 5e-07
Hs4506797 [B] KOG4140 Nuclear protein Ataxin-7 50 6e-06
>YGL066w [B] KOG4140 Nuclear protein Ataxin-7
Length = 657
Score = 274 bits (700), Expect = 3e-73
Identities = 172/448 (38%), Positives = 231/448 (51%), Gaps = 92/448 (20%)
Query: 1 MSSVNIEIKGIRSDIQLE-----DLGSSKNGWKELLSIVKNNGNSSDLSSTDIRSKYLSR 55
M S + EIKGI+ + E G S + WK L+S K+ D + + KY +
Sbjct: 1 MRSGDAEIKGIKPKVIEEYSLSQGSGPSNDSWKSLMSSAKDTPLQYDHMNRESLKKYFNP 60
Query: 56 PSEVLSGVSKEDIRYRNCTACHQPVLVSAIIDHLENHCI-----DKMPVKKNETQDIMSS 110
++++ + I+YR C C +P+ ++AI+DHLENHC + T++ + +
Sbjct: 61 NAQLIEDPLDKPIQYRVCEKCGKPLALTAIVDHLENHCAGASGKSSTDPRDESTRETIRN 120
Query: 111 PAKSKGSN---------------------------------------------------K 119
+S G N K
Sbjct: 121 GVESTGRNNNDDDNSNDNNNDDDDDDDNDDNEDDDDADDDDDNSNGANYKKNDSSFNPLK 180
Query: 120 RSSSID---PENFDXXXXXXXXXXXXXXXRKQ-RKIKQRNPTEPHLVNFDKQCGVPLPEG 175
RS+S++ N D K+ +K+KQRNPTE HL++F+KQCGV LPEG
Sbjct: 181 RSTSMESANTPNMDTKRSKTGTPQTFSSSIKKQKKVKQRNPTEKHLIDFNKQCGVELPEG 240
Query: 176 GVCGRSLTCKSHSMGAKRAVEGRSQPFDILLADYQKRNQLKSSASKTRIXXXXXXXXXXX 235
G C RSLTCKSHSMGAKRAV GRS+P+D+LLADY + +Q K A+ +
Sbjct: 241 GYCARSLTCKSHSMGAKRAVSGRSKPYDVLLADYHREHQTKIGAAAEKRAKQQELQKLQK 300
Query: 236 XXXXGKDKNT----------------GKTSSN---------EVVNE-SLPKLSPEEETTL 269
+ K+T GK++ N +NE L+PEEETT
Sbjct: 301 QIQKEQKKHTQQQKQGQRSKQRNVNGGKSAKNGGKSTVHNGNNINEIGHVNLTPEEETTQ 360
Query: 270 VLNGVSRSYPLPLETTVLTSTRSRTKYVRMREMFGSAFSIKPGFKSPGVGAFRSRVGLID 329
VLNGVSRS+PLPLE+TVL+S R RTKY RMREMF S+FS+KPG+ SPG GA SRVG +D
Sbjct: 361 VLNGVSRSFPLPLESTVLSSVRYRTKYFRMREMFASSFSVKPGYTSPGYGAIHSRVGCLD 420
Query: 330 IDRTTDYTFRIRTPQPIN-ASPQNLTPE 356
+DRTTDY FR+RTPQPIN + QNL P+
Sbjct: 421 LDRTTDYKFRVRTPQPINHLTNQNLNPK 448
>SPCC126.04c [B] KOG4140 Nuclear protein Ataxin-7
Length = 344
Score = 104 bits (259), Expect = 3e-22
Identities = 76/268 (28%), Positives = 115/268 (42%), Gaps = 48/268 (17%)
Query: 64 SKEDIRYRNCTACHQPVLVSAIIDHLENHCIDKMPVKKNE--------TQDI-------- 107
+ ++ Y CT C +P L I DH + K P + E +D+
Sbjct: 75 NNSELDYVVCTKCDRPFLSEYIEDHHSSCNGIKPPKPQFEPVANSQVLNKDVNNGNNAPI 134
Query: 108 ---MSSPAKSKGSNKRSSSIDPENFDXX-----XXXXXXXXXXXXXRKQRKIKQRNPTEP 159
+ S AK N +S++ + K+ K++NP
Sbjct: 135 KNGVKSTAKGSAGNHEKNSVNGQKNPEMPPKRRKTEENKKPTKSALPKKEASKKKNPKVK 194
Query: 160 HLVNFDKQCGVPLPEGGVCGRSLTCKSHSMGAKRAVEGRSQPFDILLADYQKRNQLKSSA 219
V+ +KQCGV LP G +C RSLTCK+HSM +KRAV GRSQP+D+LLA QK+NQ+K
Sbjct: 195 GPVDVEKQCGVLLPNGQMCARSLTCKTHSMSSKRAVPGRSQPYDVLLAACQKKNQVKI-- 252
Query: 220 SKTRIXXXXXXXXXXXXXXXGKDKNTGKTSSNEVVNESLPKLSPEEETTLVLNGVSRSYP 279
+ +T+ N+ + +EE + ++N + +S
Sbjct: 253 ----------------------QRQILETAKESEDNQHQAPVDSDEEVSFIMNVLQKSGN 290
Query: 280 LPLETTVLTSTRSRTKYVRMREMFGSAF 307
PLE V + R Y R RE+ +AF
Sbjct: 291 QPLEQKVFLPVKRRHSYFRTRELIAAAF 318
>Hs20543063 [B] KOG4140 Nuclear protein Ataxin-7
Length = 759
Score = 53.9 bits (128), Expect = 5e-07
Identities = 27/61 (44%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 165 DKQCGVPLPEGGV-CGRSLTCKSHSMGAKRAVEGRSQPFDILLADYQKRNQLKSSASKTR 223
+K CGV PE C RSLTCK+HS+ +RAV GR + FD+LLA+++ +++ K K
Sbjct: 78 NKHCGVLDPETKKPCTRSLTCKTHSLSHRRAVPGRKKQFDLLLAEHKAKSREKEVKDKEH 137
Query: 224 I 224
+
Sbjct: 138 L 138
>Hs4506797 [B] KOG4140 Nuclear protein Ataxin-7
Length = 892
Score = 50.4 bits (119), Expect = 6e-06
Identities = 25/53 (47%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Query: 165 DKQCGV-PLPEGGVCGRSLTCKSHSMGAKRAVEGRSQPFDILLADYQKRNQLK 216
D CGV L C RSLTCK+HS+ +RAV+GR + FD+LLA+++ + + K
Sbjct: 344 DIHCGVIDLDTKKPCTRSLTCKTHSLTQRRAVQGRRKRFDVLLAEHKNKTREK 396
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.311 0.128 0.356
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,081,209
Number of Sequences: 60738
Number of extensions: 891958
Number of successful extensions: 1905
Number of sequences better than 1.0e-05: 4
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1898
Number of HSP's gapped (non-prelim): 9
length of query: 491
length of database: 30,389,216
effective HSP length: 110
effective length of query: 381
effective length of database: 23,708,036
effective search space: 9032761716
effective search space used: 9032761716
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)