ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII0620 good L KOG3084 Replication, recombination and repair NADH pyrophosphatase I of the Nudix family of hydrolases
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII0620 218777 218178 -200
(200 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YGL067w [L] KOG3084 NADH pyrophosphatase I of the Nudix family o... 151 7e-37
SPBC1778.03c [L] KOG3084 NADH pyrophosphatase I of the Nudix fam... 125 3e-29
Hs13899267_2 [L] KOG3084 NADH pyrophosphatase I of the Nudix fam... 123 1e-28
At5g20070 [L] KOG3084 NADH pyrophosphatase I of the Nudix family... 100 2e-21
Hs17470986 [L] KOG3084 NADH pyrophosphatase I of the Nudix famil... 81 8e-16
CE27958 [L] KOG3084 NADH pyrophosphatase I of the Nudix family o... 60 3e-09
>YGL067w [L] KOG3084 NADH pyrophosphatase I of the Nudix family of
hydrolases
Length = 384
Score = 151 bits (381), Expect = 7e-37
Identities = 84/205 (40%), Positives = 123/205 (59%), Gaps = 15/205 (7%)
Query: 1 MMLHWLGTHKYCSMCGHENEVIACGGQLHCTNQS----CS-SNGRISNVSFPRTDPVVIS 55
M L WL +K+C CG + G +L C+N++ C+ + RI+NV FPRTDP VI
Sbjct: 168 MYLDWLAKYKFCPGCGSPLFPVEAGTKLQCSNENRNVYCNVRDARINNVCFPRTDPTVII 227
Query: 56 AVTNINRDKVLLCKHKLPSLRDPKRNMYACVSGFMDPSETVENAVLREVWEETGLDVLHV 115
A+TN + K L + K R +Y+ ++GFM+PSET+E A +RE+WEETG+ ++
Sbjct: 228 ALTNSDYSKCCLARSKK---RYGDFVLYSTIAGFMEPSETIEEACIREIWEETGISCKNI 284
Query: 116 DYVTTQPWPFTNNIMIGCLAVV---DKAQQVDLGNDDELMDAKWFAKDDVRRMLDSGMDS 172
D V +QPWP+ ++MIGCL +V K + ++L +DDEL+DA+WF ++ + LD
Sbjct: 285 DIVRSQPWPYPCSLMIGCLGIVQFNSKNEVINLNHDDELLDAQWFDTTEIIQALDKYAGG 344
Query: 173 YGLLRDPV-TGIGLPNDKTIANRLI 196
Y R P I LP TIA +LI
Sbjct: 345 Y---RVPFKNDINLPGSTTIAFQLI 366
>SPBC1778.03c [L] KOG3084 NADH pyrophosphatase I of the Nudix family of
hydrolases
Length = 376
Score = 125 bits (315), Expect = 3e-29
Identities = 69/203 (33%), Positives = 114/203 (55%), Gaps = 17/203 (8%)
Query: 2 MLHWLGTHKYCSMCGHENEVIACGGQLHCTN------QSCSSNGRISNVSFPRTDPVVIS 55
+L W+ +++C CG N G +L C++ +C S I+N +PRTDP VI
Sbjct: 172 ILDWISRYRFCPGCGKRNIPTMGGTKLVCSDVLLNDDSNCPSKKGINNYQYPRTDPCVIM 231
Query: 56 AVTNINRDKVLLCKHKLPSLRDPKRNMYACVSGFMDPSETVENAVLREVWEETGLDVLHV 115
+ + + +LL + +LR PK +YAC++GF++P E++E AV+RE +EE+G+DV V
Sbjct: 232 VILSHDMQHILLGR----ALRHPK-GLYACLAGFLEPGESLEEAVVRETYEESGVDVEKV 286
Query: 116 DYVTTQPWPFTNNIMIGCLAVVDKAQQVDLGNDDELMDAKWFAKDDVRRMLDSGMDSYGL 175
Y +QPWPF ++M+ C + K ++ D EL D ++F++++V R L+
Sbjct: 287 LYYASQPWPFPQSLMLACFGIARKNAKIQRDKDLELEDVRFFSREEVLRSLEWD------ 340
Query: 176 LRDPVTGIGLPNDKTIANRLIRA 198
+D I P +IA LI+A
Sbjct: 341 AKDGPAPILFPPKLSIARNLIQA 363
>Hs13899267_2 [L] KOG3084 NADH pyrophosphatase I of the Nudix family of
hydrolases
Length = 183
Score = 123 bits (309), Expect = 1e-28
Identities = 71/190 (37%), Positives = 108/190 (56%), Gaps = 18/190 (9%)
Query: 9 HKYCSMCGHENEVIACGGQLHCTNQSCSSNGRISNVSFPRTDPVVISAVTNINRDKVLLC 68
+K+C CG+ ++ G + C + C S + N S+PR DPVVI V + + K LL
Sbjct: 2 YKFCPTCGNATKIEEGGYKRLCLKEDCPSLNGVHNTSYPRVDPVVIMQVIHPDGTKCLLG 61
Query: 69 KHKLPSLRDPKRNMYACVSGFMDPSETVENAVLREVWEETGLDVLHVDYVTTQPWPFTNN 128
+ K R P M+ C++GF++P ET+E+AV REV EE+G+ V HV YV QPWP ++
Sbjct: 62 RQK----RFPP-GMFTCLAGFIEPGETIEDAVRREVEEESGVKVGHVQYVACQPWPMPSS 116
Query: 129 IMIGCLAV-VDKAQQVDLGNDDELMDAKWFAKDDVRRMLDSGMDSYGLLRDPVTGIGLPN 187
+MIGCLA+ V +VD +E+ DA+WF ++ V +L G +P
Sbjct: 117 LMIGCLALAVSTEIKVD---KNEIEDARWFTREQVLDVLTKGKQQ---------AFFVPP 164
Query: 188 DKTIANRLIR 197
+ IA++LI+
Sbjct: 165 SRAIAHQLIK 174
>At5g20070 [L] KOG3084 NADH pyrophosphatase I of the Nudix family of
hydrolases
Length = 438
Score = 99.8 bits (247), Expect = 2e-21
Identities = 56/171 (32%), Positives = 94/171 (54%), Gaps = 20/171 (11%)
Query: 2 MLHWLGTHKYCSMCGHENEVIACGGQLHCTNQSCSSNGRISNVSFPRTDPVVISAVTNIN 61
+L W ++C CG + G + C++++C +PR DPVVI V +
Sbjct: 202 LLEWHNVSQFCGSCGSKTFPKEAGRRKQCSDETCRKR------VYPRVDPVVIMLVIDRE 255
Query: 62 RDKVLLCKHKLPSLRDPKRNMYACVSGFMDPSETVENAVLREVWEETGLDVLHVDYVTTQ 121
D+ LL + R M++C++GF++P E++E AV RE WEETG++V V Y ++Q
Sbjct: 256 NDRALLSRQSRYVPR-----MWSCLAGFIEPGESLEEAVRRETWEETGIEVGDVVYHSSQ 310
Query: 122 PWP-----FTNNIMIGCLAVVDKAQQVDLGND-DELMDAKWFAKDDVRRML 166
PWP +M+G A A+ +D+ D +EL DA+W ++++V++ L
Sbjct: 311 PWPVGPSSMPCQLMLGFFAF---AKTLDINVDKEELEDAQWHSREEVKKAL 358
>Hs17470986 [L] KOG3084 NADH pyrophosphatase I of the Nudix family of
hydrolases
Length = 352
Score = 81.3 bits (199), Expect = 8e-16
Identities = 59/200 (29%), Positives = 94/200 (46%), Gaps = 17/200 (8%)
Query: 2 MLHWLGTHKYCSMCGHENEVIACGGQLHCTNQSCSSNGRISNVSFPRTDPVVISAVTNIN 61
+L W H++CS G + G + C + + + +P+ PV I+ V++
Sbjct: 159 LLRWHDAHQFCSRSGQPTKKNVAGSKRVCPSNNI--------IYYPQMAPVAITLVSDGT 210
Query: 62 RDKVLLCKHKLPSLRDPKRNMYACVSGFMDPSETVENAVLREVWEETGLDVLHVDYVTTQ 121
R +L + P + MY+ ++GF D E+VE + REV EE GL+V + Y +Q
Sbjct: 211 RC-LLARQSSFP------KGMYSALAGFCDIGESVEETIRREVAEEVGLEVESLQYYASQ 263
Query: 122 PWPF-TNNIMIGCLAVVDKAQQVDLGNDDELMDAKWFAKDDVRRMLDSGMDSYGLLRDPV 180
WPF + ++MI C A V Q N EL A WF+ D+V L Y ++
Sbjct: 264 HWPFPSGSLMIACHATVKPGQTEIQVNLRELETAAWFSHDEVATAL-KRKGPYTQQQNGT 322
Query: 181 TGIGLPNDKTIANRLIRACV 200
LP I+++LI+ V
Sbjct: 323 FPFWLPPKLAISHQLIKEWV 342
>CE27958 [L] KOG3084 NADH pyrophosphatase I of the Nudix family of
hydrolases
Length = 348
Score = 59.7 bits (143), Expect = 3e-09
Identities = 51/204 (25%), Positives = 89/204 (43%), Gaps = 22/204 (10%)
Query: 5 WLGTHKYCSMCGHENEVIACGGQLHCTNQSCSSNGRISNVSFPRTDPVVISAVTNINRDK 64
W ++ C C ++ + C V +P PV I+ +T+ +
Sbjct: 148 WASIYRRCPKCAAALKMRSSKSGAECVT--------CQRVYYPTFSPVSITLITDPTNEH 199
Query: 65 VLLCKHKLPSLRDPKRNMYACVSGFMDPSETVENAVLREVWEETGLDVLHVDYVT-TQPW 123
LL +H R ++ V+GF E++ RE+ EE G++V + + +QPW
Sbjct: 200 ALLVRH-----RGSAGGVFTAVAGFAHSGESMAECARREIAEEVGIEVDSIRSLDMSQPW 254
Query: 124 PFTNN-IMIGCLAVVDKAQQVDLGNDDELMDAKWFAKDDVRRMLDSGMDSYGL------L 176
P ++ +MI +AV Q++ + DEL A+WF + V+ L + + L L
Sbjct: 255 PMPDSSLMIAHVAVAKIDQKISVC-PDELETAQWFTRHQVKEALTTTLADPLLKNLPRTL 313
Query: 177 RDPVTGIGLPNDKTIANRLIRACV 200
D T +P IA+++IR V
Sbjct: 314 DDRQTLHYIPPAGAIAHQMIRQWV 337
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.321 0.137 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,337,190
Number of Sequences: 60738
Number of extensions: 564411
Number of successful extensions: 1266
Number of sequences better than 1.0e-05: 6
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1247
Number of HSP's gapped (non-prelim): 6
length of query: 200
length of database: 30,389,216
effective HSP length: 101
effective length of query: 99
effective length of database: 24,254,678
effective search space: 2401213122
effective search space used: 2401213122
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)