ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII0815 check: MH A KOG0947 RNA processing and modification Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII0815 289199 292201 1001
(1001 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YLR398c [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-... 1020 0.0
SPCC550.03c [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 D... 684 0.0
Hs20631987 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DE... 568 e-161
At3g46960 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEA... 550 e-156
CE20651 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-... 539 e-153
YJL050w [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box ... 453 e-127
CE06562 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box ... 437 e-122
At1g59760 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-bo... 433 e-121
SPAC6F12.16c [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD... 427 e-119
ECU04g1290 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DE... 427 e-119
7298249 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box ... 425 e-118
SPAC17H9.02 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-... 420 e-117
Hs14721269 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-b... 409 e-113
At2g06990 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-bo... 407 e-113
ECU04g0910 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-b... 389 e-107
7301051 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-... 304 4e-82
At1g70070 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEA... 289 2e-77
ECU05g0940 [R] KOG0949 Predicted helicase DEAD-box superfamily 114 1e-24
Hs18548973 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box super... 111 5e-24
SPAC9.03c [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily 105 3e-22
7300033 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily 82 3e-15
YER172c [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily 82 4e-15
CE29195 [R] KOG0949 Predicted helicase DEAD-box superfamily 82 5e-15
SPAC694.02 [R] KOG0949 Predicted helicase DEAD-box superfamily 81 9e-15
At1g20960 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily 80 2e-14
At2g42270 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily 78 6e-14
CE21971 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily 77 1e-13
Hs22042312 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily 75 7e-13
7299675 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfamily 73 2e-12
YGL251c [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily 73 3e-12
Hs14747366 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box super... 73 3e-12
CE27019 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfamily 73 3e-12
YGR271w [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily 72 4e-12
At4g32700 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfamily 69 5e-11
SPBC13G1.10c [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box sup... 68 8e-11
At5g61140 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superf... 68 8e-11
Hs19525733 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfa... 67 1e-10
ECU06g0920 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily 66 2e-10
CE20305 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily 66 3e-10
Hs16418479 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfa... 65 4e-10
7295156 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfamily 65 5e-10
At3g27730 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superf... 64 1e-09
CE07565 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfamily 59 5e-08
Hs18556835 [R] KOG0949 Predicted helicase DEAD-box superfamily 58 6e-08
ECU07g0830 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box super... 52 5e-06
>YLR398c [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-box
superfamily
Length = 1287
Score = 1020 bits (2638), Expect = 0.0
Identities = 541/948 (57%), Positives = 678/948 (71%), Gaps = 46/948 (4%)
Query: 6 NSLDDLFESLNKL-DVSDVKEFHDRPTKATVESNEIEI---DEISKRFLNLSNVLDWNLL 61
+S+ +L++SL ++ + +DV+ F DR TK ES + D I RFL SN L W+LL
Sbjct: 8 SSIQELYQSLKEITNNADVELFEDRITKLDFESTDEPKHANDIIKDRFLRPSNALPWSLL 67
Query: 62 DLLQSMPDMNTSNEIKPNAVKNNNTVYSSFLHCPDPVSRTSYHFHRLGIDGKITSYEEKV 121
D++Q +P ++ + + Y L PDP++RTSY F R G++GKI+ Y+E+V
Sbjct: 68 DMVQDVPHTSSPEDC------SGKLDYKELLKVPDPINRTSYQFKRTGLEGKISGYKEEV 121
Query: 122 NIEDVVNANSANSLSLTRKINHQGDLIRGTTNQLPFTPGGLGQDVVETTSESLQINA-ES 180
++++V NAN++NSLS+TR INH + +RG+T QLPFTPGG+ V+T SE + +
Sbjct: 122 DLKEVANANASNSLSITRSINHNQNSVRGSTAQLPFTPGGIPMKSVKTDSEQNGSSTMAN 181
Query: 181 AGKLLPRDKFGLFNVPPGLERGIVPRVEAGSNDDEK-QFEEIDKLSNLNNSQENKKEVEK 239
A KLL +D GLF++P G+ RGI P N+D+ QF+E+ +L+ ++N + + E +
Sbjct: 182 ATKLLHKDGQGLFDIPEGMNRGIKPMDSPAENEDQNGQFKELKQLNEIDNELDIRIEANE 241
Query: 240 LRELEYQKMA---STAVVDEAL--------GSSEIDKLLPVDLNFARHIRTFNNTAEKVE 288
+ E +K A S +++EA +EID+LLP+ ++F R + K E
Sbjct: 242 AKLKEEEKSAKSISEEIMEEATEETTADNADDAEIDELLPIGIDFGRTKPVSKSVPVKKE 301
Query: 289 WAHMVDLNSNMDNFNELVPNPARTWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVA 348
WAH+VDLN ++NF+EL+PNPAR+WPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVA
Sbjct: 302 WAHVVDLNHKIENFDELIPNPARSWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVA 361
Query: 349 EYAIAMSKRNMTKTIYTSPIKALSNQKFRDFKEDFDDVDVGLITGDVQINPEADCLIMTT 408
EYAIAM+ RNMTKTIYTSPIKALSNQKFRDFKE FDDV++GLITGDVQINP+A+CLIMTT
Sbjct: 362 EYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQINPDANCLIMTT 421
Query: 409 EILRSMLYRGADLIRDVEFVIFDEVHYVNDQTRGVVWEEVIIMLPQHVKFILLSATVPNT 468
EILRSMLYRGADLIRDVEFVIFDEVHYVNDQ RGVVWEEVIIMLPQHVKFILLSATVPNT
Sbjct: 422 EILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNT 481
Query: 469 FEFANWVGRTKQKNIYVISTPKRPVPLEINIWAKKKVIPVINDKREFLPQNFREHKELLT 528
+EFANW+GRTKQKNIYVISTPKRPVPLEINIWAKK++IPVIN EFL NFR+HKE+L
Sbjct: 482 YEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILN 541
Query: 529 AXXXXXXXXXXXXXXXXXXQK----------------------TITKGSKGVGAKGSNMS 566
+ GS+G GA GSN
Sbjct: 542 GESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKR 601
Query: 567 TFYKYDGASKTTWYDLLKNLRANDLLPAVVFVFSKKRCEEYADSIEAADLLTAKERSAIH 626
F+ DG SK TW +++ LR +LLP VVFVFSKKRCEEYAD +E + KE+S IH
Sbjct: 602 KFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIH 661
Query: 627 IFIEKSISRLRKDDRELPQITKIRSLLSRGIAVHHGGLLPIVKELIEILFAKGFVKLLFA 686
+FIEKSI+RL+K+DR+LPQI K RSLL RGIAVHHGGLLPIVKELIEILF+KGF+K+LFA
Sbjct: 662 MFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFA 721
Query: 687 TETFAMGLNLPTRTVVFSEIQKHDGEKKRYLLPGEFTQMAGRAGRRGKDKTGTVIVMSYS 746
TETFAMGLNLPTRTV+FS I+KHDG R L PGEFTQMAGRAGRRG D TGTVIVM+Y+
Sbjct: 722 TETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYN 781
Query: 747 RPIDEASFKDVSLGVPTRLQSQFRLTYNMILNLLRIEALRVEEMIKFSFSENSKETLKPE 806
P+ A+FK+V++GVPTRLQSQFRLTYNMILNLLRIEALRVEEMIK+SFSEN+KETL+PE
Sbjct: 782 SPLSIATFKEVTMGVPTRLQSQFRLTYNMILNLLRIEALRVEEMIKYSFSENAKETLQPE 841
Query: 807 QEKEIKELQSKVDSIDISEFSEETVKEYESVHNLLTGYRQACVDIISEIDESRELGKRLS 866
EK+IK LQ ++ +I+ E + E L+ Y++A V+++ E+ +S + L
Sbjct: 842 HEKQIKVLQEELQTIEYKS-CEICDNDIEKFLELMLAYKEATVNLMQEMVKSPSILHILK 900
Query: 867 RGRFIFYRKNDGNPVLGLVTRIDPPNGVCTVLRLTKPMLLHNEKINRL 914
GR + +R + LG V ++ + VC ++ TKP L N + N L
Sbjct: 901 EGRLVAFRDPNDCLKLGFVFKVSLKDAVCVIMTFTKPYKLPNGEPNHL 948
>SPCC550.03c [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-box
superfamily
Length = 1213
Score = 684 bits (1765), Expect = 0.0
Identities = 379/759 (49%), Positives = 507/759 (65%), Gaps = 45/759 (5%)
Query: 88 YSSFLHCPDPVSRTSYHFHRLGIDGKITSYEEKVNIEDVVNANSANSLSLTRKINHQGDL 147
Y P+ ++RT F R G++GKI Y+E + + + NS NS S RK + + +
Sbjct: 71 YKGLYEYPETLARTQIRFQRHGLEGKIMGYKEVPEL--IEDLNSKNSSSFLRKPSSKNEF 128
Query: 148 IRGTTNQLPFTPGGLGQDVVETTSESLQINAESAGKLLPRDKFGLFNVPPGLERGIVPRV 207
+RG+T+ +PF L D S+ I E + K+ + GL VPPG RG+
Sbjct: 129 VRGSTSNIPF----LADD-----SDVDAIAGEPSVKMALYGEDGLLQVPPGFSRGLSMTA 179
Query: 208 EAGSNDDEKQFE-EIDKLSNLNNSQENKKEVEKLRELEYQKMASTAVVDEALGSSEIDKL 266
+ +++ +F+ E + +S N + +L E + K ++ SEID L
Sbjct: 180 TSTTDNLNDEFDPEKWDTKKVKSSNRNFVTIHELNE--HLKNVNSK-------HSEIDDL 230
Query: 267 LPVDLNFARHIRTFNNTAEKVEWAHMVDLNSNMDNFNELVPNPARTWPFELDTFQKEAVY 326
LP + + N ++ ++AH+VD ++ ++NF +LVP A +PFELD FQKEA+Y
Sbjct: 231 LPDKRSIVSLPPSTLNLHKQPDYAHVVDSSAPIENFQQLVPEMALDFPFELDNFQKEAIY 290
Query: 327 HLEQGDSVFVAAHTSAGKTVVAEYAIAMSKRNMTKTIYTSPIKALSNQKFRDFKEDFDDV 386
HLE GDSVFVAAHTSAGKTVVAEYAIA+++++MTK IYTSPIKALSNQKFRDFK F+DV
Sbjct: 291 HLEMGDSVFVAAHTSAGKTVVAEYAIALAQKHMTKAIYTSPIKALSNQKFRDFKHKFEDV 350
Query: 387 DVGLITGDVQINPEADCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQTRGVVWE 446
G++TGDVQ+NPE CL+MTTEILRSMLYRGADLIRDVEFVIFDEVHYVND RGVVWE
Sbjct: 351 --GILTGDVQVNPEGSCLLMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDLERGVVWE 408
Query: 447 EVIIMLPQHVKFILLSATVPNTFEFANWVGRTKQKNIYVISTPKRPVPLEINIWAKKKVI 506
EVIIMLP HV ILLSATVPNT EFA+WVGRTK+KNIYVIST KRPVPLE +W K+ +
Sbjct: 409 EVIIMLPPHVTLILLSATVPNTKEFASWVGRTKKKNIYVISTLKRPVPLEHYLWVKQNMF 468
Query: 507 PVINDKREFLPQNFREHKELLTAXXXXXXXXXXXXXXXXXXQKTITKGSKGVGA-KGSNM 565
+++ FL ++ + L K ++G GA +G +
Sbjct: 469 KIVDQHGRFLMDGYKSANDALKKPDKPVIA------------KDNKNSARGRGAARGRGV 516
Query: 566 ST-FYKYDGASKT-------TWYDLLKNLRANDLLPAVVFVFSKKRCEEYADSIEAADLL 617
T + G++K+ TW L+ +L +LLP +VFVFSKKRCEEY D++ DL
Sbjct: 517 QTNMMRGRGSAKSVERRDANTWVHLIGHLHKQNLLPVIVFVFSKKRCEEYVDTLTNRDLN 576
Query: 618 TAKERSAIHIFIEKSISRLRKDDRELPQITKIRSLLSRGIAVHHGGLLPIVKELIEILFA 677
+E+S +H+ IEK+++RL+K+DR LPQI ++R +LSRG+AVHHGGLLPI+KE++EILF
Sbjct: 577 NHQEKSEVHVVIEKAVARLKKEDRLLPQIGRMREMLSRGLAVHHGGLLPIIKEIVEILFQ 636
Query: 678 KGFVKLLFATETFAMGLNLPTRTVVFSEIQKHDGEKKRYLLPGEFTQMAGRAGRRGKDKT 737
+G VK+LFATETFAMG+N+P ++VVFS QKHDG R LLPGE+TQ +GRAGRRG D T
Sbjct: 637 RGLVKVLFATETFAMGVNMPAKSVVFSGTQKHDGRNFRDLLPGEYTQCSGRAGRRGLDVT 696
Query: 738 GTVIVMSYSRPIDEASFKDVSLGVPTRLQSQFRLTYNMILNLLRIEALRVEEMIKFSFSE 797
GTVI++S S D AS + + +G ++L SQFRLTYNMILNLLR+E LR+E+MIK SFSE
Sbjct: 697 GTVIILSRSELPDTASLRHMIMGPSSKLISQFRLTYNMILNLLRVETLRIEDMIKRSFSE 756
Query: 798 NSKETLKPEQEKEIKELQSKVDSIDISEFSEETVKEYES 836
N +TL P+ E++IK + K+ ++ E S+ +KE +S
Sbjct: 757 NVNQTLVPQHEEKIKSFEEKLSALK-KEMSDVDLKEIKS 794
>Hs20631987 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-box
superfamily
Length = 1246
Score = 568 bits (1464), Expect = e-161
Identities = 338/786 (43%), Positives = 464/786 (59%), Gaps = 43/786 (5%)
Query: 112 GKITSYEEKVNIEDVVNANSANSLSLTRKINHQGDLIRGTTNQLPFTPGGLGQDVVETTS 171
G+I Y+E V +E+ N ++ SLSL R + G + PF PGG+ + + +
Sbjct: 111 GQILGYKE-VLLENT-NLSATTSLSLRRPPGPASQSLWGNPTRYPFWPGGMDEPTITDLN 168
Query: 172 ESLQINAESAGKLLPRDKFGLFNVPPGLERGI------VPRVEAGSNDDEKQFEEIDKLS 225
E A + + +K L +PPG ++G+ P G E +D
Sbjct: 169 -----TREEAEEEIDFEK-DLLTIPPGFKKGMDFAPKDCPTPAPGLLSLSCLLEPLD--- 219
Query: 226 NLNNSQENKKEVEKLRELEYQKMASTAVVDEALG-SSEIDKLLPVDLNFARHIRTFNNTA 284
L E++ E S + L +S ++ L+ + + A
Sbjct: 220 -LGGGDEDENEAVGQPGGPRGDTVSASPCSAPLARASSLEDLVLKEASTAVSTPEAPEPP 278
Query: 285 EKVEWAHMVDLNSNMDNFNELVPNPARTWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGK 344
+ +WA VD S + +F L+P PA W FE D FQK+A+ HLE+ DSVFVAAHTSAGK
Sbjct: 279 SQEQWAIPVDATSPVGDFYRLIPQPAFQWAFEPDVFQKQAILHLERHDSVFVAAHTSAGK 338
Query: 345 TVVAEYAIAMSKRNMTKTIYTSPIKALSNQKFRDFKEDFDDVDVGLITGDVQINPEADCL 404
TVVAEYAIA+++++MT+TIYTSPIKALSNQKFRDF+ F DV GL+TGDVQ++PEA CL
Sbjct: 339 TVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGDV--GLLTGDVQLHPEASCL 396
Query: 405 IMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQTRGVVWEEVIIMLPQHVKFILLSAT 464
IMTTEILRSMLY G+D+IRD+E+VIFDEVHY+ND RGVVWEEV+IMLP HV ILLSAT
Sbjct: 397 IMTTEILRSMLYSGSDVIRDLEWVIFDEVHYINDVERGVVWEEVLIMLPDHVSIILLSAT 456
Query: 465 VPNTFEFANWVGRTKQKNIYVISTPKRPVPLEINIWAKKKVIPVINDKREFLPQNFREHK 524
VPN EFA+W+GR K++ IYVIST RPVPLE + F + +
Sbjct: 457 VPNALEFADWIGRLKRRQIYVISTVTRPVPLEHYL---------------FTGNSSKTQG 501
Query: 525 ELLTAXXXXXXXXXXXXXXXXXXQKTITKGSKGVGAKGSNMSTFYKYDGASKTTWYDLLK 584
EL +K + SK G+ T + + LL
Sbjct: 502 ELFLLLDSRGAFHTKGYYAAVEAKKE--RMSKHAQTFGAKQPTHQGGPAQDRGVYLSLLA 559
Query: 585 NLRANDLLPAVVFVFSKKRCEEYADSIEAADLLTAKERSAIHIFIEKSISRLRKDDRELP 644
+LR LP VVF FS+ RC+E A + + DL T+ E+S IH+F+++ ++RLR DR+LP
Sbjct: 560 SLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLP 619
Query: 645 QITKIRSLLSRGIAVHHGGLLPIVKELIEILFAKGFVKLLFATETFAMGLNLPTRTVVFS 704
Q+ + LL+RG+ VHH G+LPI+KE++E+LF++G VK+LFATETFAMG+N+P RTVVF
Sbjct: 620 QVLHMSELLNRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFD 679
Query: 705 EIQKHDGEKKRYLLPGEFTQMAGRAGRRGKDKTGTVIVMSYSRPIDEASFKDVSLGVPTR 764
++KHDG R LLPGE+ QMAGRAGRRG D TGTVI++ R + A + +G P++
Sbjct: 680 SMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQ 739
Query: 765 LQSQFRLTYNMILNLLRIEALRVEEMIKFSFSENSKETLKPEQEKEIKELQSKVDSIDIS 824
LQSQFRLTY MILNLLR++ALRVE+M+K SFSE E+ + EL ++ +++
Sbjct: 740 LQSQFRLTYTMILNLLRVDALRVEDMMKRSFSEFPSRKDSKAHEQALAELTKRLGALEEP 799
Query: 825 EFSEETV--KEYESVHNLLTGYRQACVDIISEIDESRELGKRLSRGRFIFYRKNDGNPVL 882
+ + + V EY S LT + I I ES K LS GR + + + + L
Sbjct: 800 DMTGQLVDLPEYYSWGEELTETQHM---IQRRIMESVNGLKSLSAGRVVVVKNQEHHNAL 856
Query: 883 GLVTRI 888
G++ ++
Sbjct: 857 GVILQV 862
>At3g46960 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-box
superfamily
Length = 1347
Score = 550 bits (1417), Expect = e-156
Identities = 336/764 (43%), Positives = 449/764 (57%), Gaps = 68/764 (8%)
Query: 139 RKINHQGDLIRGTTNQLPFTPGGLGQDVVETTSESLQINAESAGKLLPRDKFG--LFNVP 196
R + D +RG+ N PF PGGL +SE + S+G+ + G VP
Sbjct: 149 RMVGPPKDFLRGSVNNRPFRPGGLEDS---QSSERVLPEGVSSGQWVQELLNGGPAQTVP 205
Query: 197 PGLERGIVPRVEAGSNDDEKQFEEI--DKLSNLNNSQENKKEVEKLRELEY--------- 245
P ++ + + G Q + D S+ N S EN V + L Y
Sbjct: 206 PSFKQSL----DLGDLMPYPQTWSVYEDHSSHGNASDENS--VCRSMSLVYINYFTFNCD 259
Query: 246 ------QKMASTAVVDEALGSSEIDKLLPVDLNFARHIRTFNNTA--------------- 284
A +A S+E+ K L D+ I + TA
Sbjct: 260 HTAGSESPKAEAEPDAKASISNEVSKGLETDVTVLDEILSSAKTAIMSEEAVTGSSDKQL 319
Query: 285 EKVEWAHMVDLNSNMDNFNELVPNPARTWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGK 344
K WA D D F ELVP+ A +PFELD FQKEA+ LE+G+SVFVAAHTSAGK
Sbjct: 320 RKEGWATKGDSQDIADRFYELVPDMAIEFPFELDNFQKEAICCLEKGESVFVAAHTSAGK 379
Query: 345 TVVAEYAIAMSKRNMTKTIYTSPIKALSNQKFRDFKEDFDDVDVGLITGDVQINPEADCL 404
TVVAEYA A++ ++ T+ +YT+PIK +SNQK+RDF FD VGL+TGDV I PEA CL
Sbjct: 380 TVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFCGKFD---VGLLTGDVSIRPEASCL 436
Query: 405 IMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQTRGVVWEEVIIMLPQHVKFILLSAT 464
IMTTEILRSMLYRGAD+IRD+E+VIFDEVHYVND RGVVWEEVIIMLP+H+ F+LLSAT
Sbjct: 437 IMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDVERGVVWEEVIIMLPRHINFVLLSAT 496
Query: 465 VPNTFEFANWVGRTKQKNIYVISTPKRPVPLEINIWAKKKVIPVINDKREFLPQNFREHK 524
VPNTFEFA+W+GRTKQK I V T KRPVPLE ++ ++ V ++ FL + ++ K
Sbjct: 497 VPNTFEFADWIGRTKQKEIRVTGTTKRPVPLEHCLFYSGELYKVCENE-VFLSKGIKDAK 555
Query: 525 ELLTAXXXXXXXXXXXXXXXXXXQKTITKG------SKGVGAKGSNMSTFYK--YDGASK 576
+ + +K S+G K S++ K Y G S+
Sbjct: 556 DSQKKKNSNAVSVAPKQQMGSSAHQDGSKSQKHEAHSRGKQNKHSSVKDVGKSSYSGNSQ 615
Query: 577 ----------TTWYDLLKNLRANDLLPAVVFVFSKKRCEEYADSIEAADLLTAKERSAIH 626
+ W L+ L LLP VVF FSK C+ AD++ DL ++ E+S I
Sbjct: 616 NNGAFRRSAASNWLLLINKLSKMSLLPVVVFCFSKNYCDRCADALTGTDLTSSSEKSEIR 675
Query: 627 IFIEKSISRLRKDDRELPQITKIRSLLSRGIAVHHGGLLPIVKELIEILFAKGFVKLLFA 686
+F +K+ SRL+ DR LPQ+ +++SLL RGI VHH GLLPIVKE++E+LF +G +K+LF+
Sbjct: 676 VFCDKAFSRLKGSDRNLPQVLRLQSLLHRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFS 735
Query: 687 TETFAMGLNLPTRTVVFSEIQKHDGEKKRYLLPGEFTQMAGRAGRRGKDKTGTVIVMSYS 746
TETFAMG+N P RTVVF ++K DG++ R LLPGE+TQMAGRAGRRG DKTGTV+VM
Sbjct: 736 TETFAMGVNAPARTVVFDALRKFDGKEFRQLLPGEYTQMAGRAGRRGLDKTGTVVVMCRD 795
Query: 747 RPIDEASFKDVSLGVPTRLQSQFRLTYNMILNLLRIEALRVEEMIKFSFSENSKETLKPE 806
DE+ + V +G TRL+SQFRLTY MIL+LLR+E L+VE+M+K SF+E + PE
Sbjct: 796 EVPDESDLRRVIVGSATRLESQFRLTYIMILHLLRVEELKVEDMLKRSFAEFHAQKKLPE 855
Query: 807 QEKEI---KELQSKVDSIDISEFSEETVKEYESVHNLLTGYRQA 847
+++ + + L +K ID+ +S +K ++ + Y +A
Sbjct: 856 KQQLLMIKRSLPTKHIEIDLLIYSSRCIKGEPAIEDYYDMYMEA 899
>CE20651 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-box
superfamily
Length = 1260
Score = 539 bits (1389), Expect = e-153
Identities = 316/807 (39%), Positives = 482/807 (59%), Gaps = 46/807 (5%)
Query: 97 PVSRTSYHFHRLGIDGKITSYEEKVNIEDVVNANSANSLSLTRKINHQ-------GDLIR 149
P+ + ++ +GKI + E E ++ ++ S+S+ R Q G+ I+
Sbjct: 46 PIDAPANIIAQVDSNGKIIGFVEN---ERIIVGSANTSMSINRAPYKQRSLHTTAGNSIK 102
Query: 150 GTTNQLPFTPGGLGQ--DVVETTSESLQINAESAGKLLPRDKFGLFNVPPGLERGIVPRV 207
G+ +PF PG L + D++ + + + E + L +D L N P + + ++P
Sbjct: 103 GSPGNVPFLPGFLEELDDLLAGETTAKSTSGEESKFLSFKDDATLLNTIPTIGQIVLPNH 162
Query: 208 EAGSNDDEK----QFEEIDKLSNLNNSQENKKEVEKL----RELEYQKMASTAVVDEALG 259
+ E EE+D L+ N+ + + ++ E + T D+ +
Sbjct: 163 SSVKKPAETPKSINIEEMDMFDLLDMVTSNEYIIHTVAAPVKKSESIESEETPEDDKKVS 222
Query: 260 SSEIDKL-LPV-DLNFARHIRTFNN----TAEKVEWAHMVDLNSNM-DNFNELVPNPART 312
+EID++ +P+ N + I F T EK E+A + L+++ D + LVP AR
Sbjct: 223 ENEIDEIEIPIIPGNTEKVIEIFGAATEPTKEKFEFAQRLVLSADEEDEYKRLVPTMARK 282
Query: 313 WPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMSKRNMTKTIYTSPIKALS 372
+PF LD FQ+ +V +E+G+S+FVAAHTSAGKTVVAEYAIA+ + + T+ +YTSPIKALS
Sbjct: 283 YPFSLDPFQQSSVLCMERGESLFVAAHTSAGKTVVAEYAIALCQAHKTRAVYTSPIKALS 342
Query: 373 NQKFRDFKEDFDDVDVGLITGDVQINPEADCLIMTTEILRSMLYRGADLIRDVEFVIFDE 432
NQKFRDFK+ F DV GL+TGD+Q++PEA CLIMTTEILRSMLY G+++IRD+E+V+FDE
Sbjct: 343 NQKFRDFKQIFGDV--GLVTGDIQLHPEAACLIMTTEILRSMLYNGSEVIRDLEWVVFDE 400
Query: 433 VHYVNDQTRGVVWEEVIIMLPQHVKFILLSATVPNTFEFANWVGRTKQKNIYVISTPKRP 492
VHY+N++ RG VWEEV+IMLP HVK ++LSATVPN EFA+WVGR K + I VIST +RP
Sbjct: 401 VHYINNEERGHVWEEVLIMLPAHVKIVMLSATVPNCVEFADWVGRIKNRKINVISTDRRP 460
Query: 493 VPLEINIWA------KKKVIPVINDKREFLPQNFREHKELLTAXXXXXXXXXXXXXXXXX 546
VPLE ++ +K + +I+ +F+ + + + K+
Sbjct: 461 VPLEHFLYTGQDGKTQKDLFKIIDRSGQFILKGYNDAKD------SKAKIYEKEKAGGAG 514
Query: 547 XQKTITKGSKGVGAKGSNMSTFYKYDGASKTTWYDLLKNLRANDLLPAVVFVFSKKRCEE 606
+ T G +G G G + K D K + +L+ ++ +D LP VVFVFS+KRC+E
Sbjct: 515 GRGTQRGGGRGGGGNGGGRNWPGKND---KNIYLNLINYMKCSDQLPMVVFVFSRKRCDE 571
Query: 607 YADSIEAADLLTAKERSAIHIFIEKSISRLRKDDRELPQITKIRSLLSRGIAVHHGGLLP 666
A + + +L T E+ + +F + + RL+ D+ELPQ+ +R L RG AVHH G+LP
Sbjct: 572 NAQMLASMNLTTEVEKQHVRLFFSQCVQRLKGSDKELPQVLTMRDLCLRGFAVHHSGILP 631
Query: 667 IVKELIEILFAKGFVKLLFATETFAMGLNLPTRTVVFSEIQKHDGEKKRYLLPGEFTQMA 726
I+KE++E+LF KG+VK+LFATETFAMG+N+P R VVF I KHDG ++R L PGE+TQMA
Sbjct: 632 ILKEVVELLFQKGYVKILFATETFAMGVNMPARCVVFDSIMKHDGTERRMLNPGEYTQMA 691
Query: 727 GRAGRRGKDKTGTVIVMSYSRPIDEAS-FKDVSLGVPTRLQSQFRLTYNMILNLLRIEAL 785
GRAGRRG D TGTVI++ + + K++ G RL+S+FR+TY+MILNLLR+E L
Sbjct: 692 GRAGRRGLDLTGTVIIICKDSTVPQPDVLKNLISGQALRLESKFRVTYSMILNLLRVEQL 751
Query: 786 RVEEMIKFSFSENSKETLKPEQEKEIKELQSKVDSIDISEFSE-ETVKEYESVHNLLTGY 844
++E+M++ S+ E+ E+ K + + ++ + ++ E S + H+ L +
Sbjct: 752 KIEDMLQRSYVESDSLRESKEKRKSLVDTKNAIQTMSTIECSTCSPNSQLRDYHDALAVF 811
Query: 845 RQACVDIISEIDESRELGKRLSRGRFI 871
+ I ++++ + K L GRF+
Sbjct: 812 LRKSEHIWPKLNDENVINKLLCSGRFL 838
>YJL050w [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box superfamily
Length = 1073
Score = 453 bits (1165), Expect = e-127
Identities = 262/650 (40%), Positives = 381/650 (58%), Gaps = 34/650 (5%)
Query: 214 DEKQFEEIDKLSNLNNSQENKKEVEKLRELE--YQKMASTAVVD--EALGSSEIDKLLPV 269
D+K E +K + N+ ENKK + E +K+ + D E S E+D +
Sbjct: 40 DKKHGLEEEKEEHEENNSENKKIKSNKSKTEDKNKKVVVPVLADSFEQEASREVDASKGL 99
Query: 270 DLNFARHIRTFNNTAEKVEWAHMVDLNSNMDNFNELVP----NPARTWPFELDTFQKEAV 325
+ + + H V L N D + + N ART+PF LD FQ A+
Sbjct: 100 TNSETLQVEQDGKVRLSHQVRHQVALPPNYD-YTPIAEHKRVNEARTYPFTLDPFQDTAI 158
Query: 326 YHLEQGDSVFVAAHTSAGKTVVAEYAIAMSKRNMTKTIYTSPIKALSNQKFRDFKEDFDD 385
+++G+SV V+AHTSAGKTVVAEYAIA S +N + IYTSPIKALSNQK+R+ +F D
Sbjct: 159 SCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGD 218
Query: 386 VDVGLITGDVQINPEADCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQTRGVVW 445
V GL+TGD+ INP+A CL+MTTEILRSMLYRG++++R+V +VIFDEVHY+ D+ RGVVW
Sbjct: 219 V--GLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVW 276
Query: 446 EEVIIMLPQHVKFILLSATVPNTFEFANWVGRTKQKNIYVISTPKRPVPLEINIWAKKK- 504
EE II+LP V+++ LSAT+PN EFA W+ + + +++ T RP PL+ ++
Sbjct: 277 EETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGD 336
Query: 505 -VIPVINDKREFLPQNFREHKELLTAXXXXXXXXXXXXXXXXXXQKTITKGSKGVGAKGS 563
+ V+++K F +NF++ T ++G KG KG
Sbjct: 337 GIYLVVDEKSTFREENFQK------------AMASISNQIGDDPNSTDSRGKKGQTYKGG 384
Query: 564 NMSTFYKYDGASKTTWYDLLKNLRANDLLPAVVFVFSKKRCEEYADSIEAADLLTAKERS 623
+ G +K Y ++K + P +VF FSK+ CEE A + D + E+
Sbjct: 385 SAK------GDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKE 438
Query: 624 AIHIFIEKSISRLRKDDRELPQITKIRSLLSRGIAVHHGGLLPIVKELIEILFAKGFVKL 683
A+ +I+ L + DRELPQI I LL RGI +HH GLLPI+KE+IEILF +GF+K+
Sbjct: 439 ALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKV 498
Query: 684 LFATETFAMGLNLPTRTVVFSEIQKHDGEKKRYLLPGEFTQMAGRAGRRGKDKTGTVIVM 743
LFATETF++GLN+P +TVVF+ ++K DG++ R++ GE+ QM+GRAGRRG D G +++M
Sbjct: 499 LFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRG-IVIM 557
Query: 744 SYSRPIDEASFKDVSLGVPTRLQSQFRLTYNMILNLLRIEALRVEEMIKFSFSENSKETL 803
++ K + G RL S F L YNMILNL+R+E + E M++ SF +
Sbjct: 558 MIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLMRVEGISPEFMLEHSFFQFQNVIS 617
Query: 804 KPEQEKEIKELQSKVDSIDISEFSEETVKEYESVHNLLTGYRQACVDIIS 853
P EK++ EL+ D I++ + EE VKEY + + GYR+ +++
Sbjct: 618 VPVMEKKLAELKKDFDGIEVED--EENVKEYHEIEQAIKGYREDVRQVVT 665
>CE06562 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box superfamily
Length = 1026
Score = 437 bits (1123), Expect = e-122
Identities = 265/672 (39%), Positives = 385/672 (56%), Gaps = 59/672 (8%)
Query: 195 VPPGLERGIVPRVEAGSN-----DDEKQFEEIDKLSNLNNSQENKKEVEKLRELEYQKMA 249
+ PG++ I+ EA N D K+ + + ++NL + N V E ++
Sbjct: 9 IEPGVKNEIMDVEEAPENPMEKLDSAKKRQAREDMTNLLANMHNDVGVGNFDEATSKR-- 66
Query: 250 STAVVDEALGSSEIDKLLPVDLNFARHIRTFNNTAEKVEWAHMVDLNSNMDNFNELVPN- 308
+ +E + + ++ ++ IRT N H V + N + F EL N
Sbjct: 67 ARVEEEEEVEEARMENII------VHTIRTDNENC-----THEVAIPPNAE-FAELRENS 114
Query: 309 ---PARTWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMSKRNMTKTIYT 365
PA+ +PF+LD FQK+A+ ++ SV V+AHTSAGKTVVA YAIA R + IYT
Sbjct: 115 GTEPAKYYPFQLDAFQKQAILCIDNNQSVLVSAHTSAGKTVVATYAIAKCLREKQRVIYT 174
Query: 366 SPIKALSNQKFRDFKEDFDDVDVGLITGDVQINPEADCLIMTTEILRSMLYRGADLIRDV 425
SPIKALSNQK+R+ +E+F DV GL+TGDV +NP+A CL+MTTEILRSMLYRG++++++V
Sbjct: 175 SPIKALSNQKYRELEEEFKDV--GLMTGDVTLNPDASCLVMTTEILRSMLYRGSEIMKEV 232
Query: 426 EFVIFDEVHYVNDQTRGVVWEEVIIMLPQHVKFILLSATVPNTFEFANWVGRTKQKNIYV 485
+V++DE+HY+ D+ RGVVWEE II++ +++K LSAT+PN +FA WV KQ+ + V
Sbjct: 233 GWVVYDEIHYMRDKERGVVWEETIILMSKNIKQAFLSATIPNARQFAQWVASIKQQPVNV 292
Query: 486 ISTPKRPVPLEINIW--AKKKVIPVINDKREFLPQNFREHKELLTAXXXXXXXXXXXXXX 543
+ T RP PL+ I+ + + V+N K EF FR+ L
Sbjct: 293 VYTDYRPTPLQHWIYPVGGEGMYEVVNVKGEFREDKFRDAMSGLATAGDSAG-------- 344
Query: 544 XXXXQKTITKGSKGVGAKGSNMSTFYKYDGASKTTWYDLLKNLRANDLLPAVVFVFSKKR 603
+ K G G +G + +++++ +ND L +VF FS+K
Sbjct: 345 ------SFNKRRTGGGTQGD-------------SNVLKIIRSVASNDGLNCIVFSFSRKE 385
Query: 604 CEEYADSIEAADLLTAKERSAIHIFIEKSISRLRKDDRELPQITKIRSLLSRGIAVHHGG 663
CE YA S++ D E+ + E +I++L +D++LPQI I LL RGI VHH G
Sbjct: 386 CESYAISLKDMDFNKDHEKGMVKSVYESAIAQLSPEDQKLPQILNILPLLRRGIGVHHSG 445
Query: 664 LLPIVKELIEILFAKGFVKLLFATETFAMGLNLPTRTVVFSEIQKHDGEKKRYLLPGEFT 723
L+PI+KE IEILF +G VK+LFATETF+MGLN+P RTVVF+ +K DG RY+ GE+
Sbjct: 446 LMPILKETIEILFGEGLVKVLFATETFSMGLNMPARTVVFTSARKFDGSDNRYITSGEYI 505
Query: 724 QMAGRAGRRGKDKTGTVIVM-SYSRPIDEASFKDVSLGVPTRLQSQFRLTYNMILNLLRI 782
QMAGRAGRRGKD GTVI+M + D+A K + G L SQFRLTYNM+LNL+R+
Sbjct: 506 QMAGRAGRRGKDDRGTVILMVDSAMSADDA--KQIIKGATDPLNSQFRLTYNMVLNLMRV 563
Query: 783 EALRVEEMIKFSFSENSKETLKPEQEKEIKELQSKVDSIDISEFSEETVKEYESVHNLLT 842
E + V +I SF + PE +K+ +++ K+ S + E ++ + + L
Sbjct: 564 EGMAVSWIINNSFHQFQSYAKIPEIDKKCVQVERKIASFNFP--WENEMRTLVDLQDQLE 621
Query: 843 GYRQACVDIISE 854
RQ + I E
Sbjct: 622 ATRQRIIQIQRE 633
>At1g59760 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box superfamily
Length = 988
Score = 433 bits (1113), Expect = e-121
Identities = 243/559 (43%), Positives = 347/559 (61%), Gaps = 37/559 (6%)
Query: 300 DNFNELVPN-----PARTWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAM 354
+N+ L P+ PA+ +PF LD+FQ EA+ L+ G+SV V+AHTSAGKTVVA YAIAM
Sbjct: 46 ENYVPLAPSVHNKPPAKDFPFTLDSFQSEAIKCLDNGESVMVSAHTSAGKTVVASYAIAM 105
Query: 355 SKRNMTKTIYTSPIKALSNQKFRDFKEDFDDVDVGLITGDVQINPEADCLIMTTEILRSM 414
S + + IYTSPIKALSNQK+RDFKE+F DV GL+TGDV I+P A CL+MTTEILRSM
Sbjct: 106 SLKENQRVIYTSPIKALSNQKYRDFKEEFSDV--GLMTGDVTIDPNASCLVMTTEILRSM 163
Query: 415 LYRGADLIRDVEFVIFDEVHYVNDQTRGVVWEEVIIMLPQHVKFILLSATVPNTFEFANW 474
Y+G++++R+V ++IFDEVHY+ D RGVVWEE I+M P++ +F+ LSATVPN EFA+W
Sbjct: 164 QYKGSEIMREVAWIIFDEVHYMRDSERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADW 223
Query: 475 VGRTKQKNIYVISTPKRPVPLEINIW--AKKKVIPVINDKREFLPQNFREHKELLTAXXX 532
V + Q+ +++ T RP PL+ ++ + V+++K +F +F++ L
Sbjct: 224 VAKVHQQPCHIVYTDYRPTPLQHYVFPAGGNGLYLVVDEKSKFHEDSFQKSLNALVP--- 280
Query: 533 XXXXXXXXXXXXXXXQKTITKGSKGVGAKGSNMSTFYKYDGASKTTWYDLLKNLRANDLL 592
++ K G KG + ++ + L+K +
Sbjct: 281 --------------TNESDKKRDNGKFQKGLVIGKL-----GEESDIFKLVKMIIQRQYD 321
Query: 593 PAVVFVFSKKRCEEYADSIEAADLLTAKERSAIHIFIEKSISRLRKDDRELPQITKIRSL 652
P ++F FSKK CE A + L + E+ A+ +I L DD++LPQ++ I +
Sbjct: 322 PVILFSFSKKECEALAMQMSKMVLNSDDEKDAVETIFASAIDMLSDDDKKLPQVSNILPI 381
Query: 653 LSRGIAVHHGGLLPIVKELIEILFAKGFVKLLFATETFAMGLNLPTRTVVFSEIQKHDGE 712
L RGI VHH GLLPI+KE+IEILF +G +K LFATETF++GLN+P +TVVF+ ++K DG+
Sbjct: 382 LKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGD 441
Query: 713 KKRYLLPGEFTQMAGRAGRRGKDKTGTVIVMSYSRPIDEASFKDVSLGVPTRLQSQFRLT 772
K R+L GE+ QM+GRAGRRG DK G I+M ++ A K + G L S F L+
Sbjct: 442 KFRWLSSGEYIQMSGRAGRRGIDKRGICILM-VDEKMEPAVAKSMLKGSADSLNSAFHLS 500
Query: 773 YNMILNLLRIEALRVEEMIKFSFSENSKETLKPEQEKEIKELQSKVDSIDISEFSEETVK 832
YNM+LN LR E E +++ SF + + P+ EK+IK L+ + DS+ I E EE++K
Sbjct: 501 YNMLLNQLRCEEGDPENLLRNSFFQFQADRAIPDLEKQIKSLEEERDSLVIEE--EESLK 558
Query: 833 EYESVHNLLTGYRQACVDI 851
Y +NL+ Y+ DI
Sbjct: 559 NY---YNLILQYKSLKKDI 574
>SPAC6F12.16c [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box superfamily
Length = 1117
Score = 427 bits (1097), Expect = e-119
Identities = 243/575 (42%), Positives = 343/575 (59%), Gaps = 34/575 (5%)
Query: 281 NNTAEKVEWAHMVDLNSNMDNFNELVP--------NPARTWPFELDTFQKEAVYHLEQGD 332
++T E VE H V ++ + VP PART+PF LD FQ ++ +E+ +
Sbjct: 155 SSTEEVVELRHQVRHQVSIPPNYDYVPISKHKSPIPPARTYPFTLDPFQAVSIACIERQE 214
Query: 333 SVFVAAHTSAGKTVVAEYAIAMSKRNMTKTIYTSPIKALSNQKFRDFKEDFDDVDVGLIT 392
SV V+AHTSAGKTVVAEYA+A S R+ + IYTSPIKALSNQK+R+ +F DV GL+T
Sbjct: 215 SVLVSAHTSAGKTVVAEYAVAQSLRDKQRVIYTSPIKALSNQKYRELLAEFGDV--GLMT 272
Query: 393 GDVQINPEADCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQTRGVVWEEVIIML 452
GDV INP+A CL+MTTEILRSMLYRG++++R+V +VIFDE+HY+ D+ RGVVWEE II+L
Sbjct: 273 GDVTINPDATCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILL 332
Query: 453 PQHVKFILLSATVPNTFEFANWVGRTKQKNIYVISTPKRPVPLEINIWAKKK--VIPVIN 510
P F+ LSAT+PN +FA W+ + ++ +V+ T RP PL+ ++ + V++
Sbjct: 333 PDKSHFVFLSATIPNAMQFAEWITKIHRQPCHVVYTDFRPTPLQHYLFPSGSDGIHLVVD 392
Query: 511 DKREFLPQNFREHKELLTAXXXXXXXXXXXXXXXXXXQKTITKGSKGVGAKGSNMSTFYK 570
+K F +NF+ L TKG+ G G K
Sbjct: 393 EKSNFREENFQRAMSALMEKQGDDPAAMA------------TKGNAKKGKTG-------K 433
Query: 571 YDGASKTTWYDLLKNLRANDLLPAVVFVFSKKRCEEYADSIEAADLLTAKERSAIHIFIE 630
+ Y ++K + + P +VF FSK+ CE A + D+ ER +
Sbjct: 434 GGVKGPSDIYKIVKMIMVKNYNPVIVFSFSKRECEALALQMSKLDMNDQTERDLVTTIFN 493
Query: 631 KSISRLRKDDRELPQITKIRSLLSRGIAVHHGGLLPIVKELIEILFAKGFVKLLFATETF 690
++++L + DRELPQI I LL RGI +HH GLLPI+KE+IEILF +G +K+LFATETF
Sbjct: 494 NAVNQLSEKDRELPQIEHILPLLRRGIGIHHSGLLPILKEVIEILFQEGLLKVLFATETF 553
Query: 691 AMGLNLPTRTVVFSEIQKHDGEKKRYLLPGEFTQMAGRAGRRGKDKTGTVIVMSYSRPID 750
++GLN+P +TVVF+ ++K DG+ R++ GE+ QM+GRAGRRG D G VI+M +D
Sbjct: 554 SIGLNMPAKTVVFTNVRKFDGKTFRWISGGEYIQMSGRAGRRGLDDRGIVILM-IDEKMD 612
Query: 751 EASFKDVSLGVPTRLQSQFRLTYNMILNLLRIEALRVEEMIKFSFSENSKETLKPEQEKE 810
K + G RL S F L+YNMILNLLR+E + E M++ F + P+ E +
Sbjct: 613 PPVAKSMLKGEADRLDSAFHLSYNMILNLLRVEGISPEFMLERCFFQFQNSLEVPKLEAK 672
Query: 811 IKELQSKVDSIDISEFSEETVKEYESVHNLLTGYR 845
++E Q DS I E ++EY ++ L YR
Sbjct: 673 LEESQQHYDSFTI--LDERPLEEYHTLKTQLERYR 705
>ECU04g1290 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-box
superfamily
Length = 881
Score = 427 bits (1097), Expect = e-119
Identities = 229/507 (45%), Positives = 316/507 (62%), Gaps = 44/507 (8%)
Query: 315 FELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMSKRNMTKTIYTSPIKALSNQ 374
FE DTFQ++A Y L + SVFV+AHTS+GKT+VAEYAI++S+ + T+TIYTSPIKALSNQ
Sbjct: 63 FEPDTFQRQAFYLLSRASSVFVSAHTSSGKTLVAEYAISLSQIHGTRTIYTSPIKALSNQ 122
Query: 375 KFRDFKEDFDDVDVGLITGDVQINPEADCLIMTTEILRSMLYRGADLIRDVEFVIFDEVH 434
K+ DFK+ +DDV G+ITGDVQ+NP A CL+MTTEILR+++YR DL+RD EFV+FDEVH
Sbjct: 123 KYHDFKQKYDDV--GIITGDVQVNPAAKCLVMTTEILRNLVYRNGDLLRDTEFVVFDEVH 180
Query: 435 YVNDQTRGVVWEEVIIMLPQHVKFILLSATVPNTFEFANWVGRTKQKNIYVISTPKRPVP 494
Y+ND RGVVWEE IIM+P+H+ FI+LSAT+PN+ EF+ WVGRTK K IYVIST KR VP
Sbjct: 181 YINDSERGVVWEECIIMIPRHINFIMLSATIPNSLEFSEWVGRTKDKTIYVISTSKRAVP 240
Query: 495 LEINIWAKKKVIPVINDKREFLPQNFREHKELLTAXXXXXXXXXXXXXXXXXXQKTITKG 554
LE I+ V + + + NF
Sbjct: 241 LEHVIYCDWCVYSIDDGGGKRNASNF---------------------------------- 266
Query: 555 SKGVGAKGSNMSTFYKYDGASKTTWYDLLKNLRANDLLPAVVFVFSKKRCEEYADSIEAA 614
KG + K K D+ + L PA+ F FSK++CE+YA+ +
Sbjct: 267 ------KGDLVPFSKKTRPTGKFKILDVANFVVKKKLTPAIFFCFSKRKCEDYAEILRTL 320
Query: 615 DLLTAKERSAIHIFIEKSISRLRKDDRELPQITKIRSLLSRGIAVHHGGLLPIVKELIEI 674
+L K R + +F+ ++ L +DR LPQ+ + S++ G+AVHHG LLP VKE +E+
Sbjct: 321 NLNDTKSREEVKLFLSEATRCLSPEDRNLPQVLSMSSMVLNGVAVHHGSLLPFVKECVEL 380
Query: 675 LFAKGFVKLLFATETFAMGLNLPTRTVVFSEIQKHDGEKKRYLLPGEFTQMAGRAGRRGK 734
LF+ VKLL ATETFAMG+N+P + VF + K DG RY+ GE+ QM+GRAGRRG
Sbjct: 381 LFSMNLVKLLIATETFAMGVNMPAKCCVFLSLSKIDGGVFRYISSGEYIQMSGRAGRRGM 440
Query: 735 DKTGTVIVMSYSRPIDEASFKDVSLGVPTRLQSQFRLTYNMILNLLRIEALRVEEMIKFS 794
D GTV++ P ++ + + G P L SQFRL++ +IL LR +RVE++++ S
Sbjct: 441 DAVGTVMIADPKMP-SLSTIQGIIHGTPFSLSSQFRLSFGLILISLR-SNIRVEDLMRRS 498
Query: 795 FSENSKETLKPEQEKEIKELQSKVDSI 821
+ E+ + K++ EL+S + +
Sbjct: 499 YGEHRSQRNYERDMKKLSELESVEEDV 525
>7298249 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box superfamily
Length = 1055
Score = 425 bits (1093), Expect = e-118
Identities = 230/535 (42%), Positives = 330/535 (60%), Gaps = 31/535 (5%)
Query: 309 PARTWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMSKRNMTKTIYTSPI 368
PA+ +PF LD FQ++A+ ++ SV V+AHTSAGKTVVAEYAIA S + IYT+PI
Sbjct: 144 PAKEYPFVLDPFQRQAILCIDNSQSVLVSAHTSAGKTVVAEYAIAKSLAAKQRVIYTTPI 203
Query: 369 KALSNQKFRDFKEDFDDVDVGLITGDVQINPEADCLIMTTEILRSMLYRGADLIRDVEFV 428
KALSNQKFR+F ++F DV GL+TGDV INP A CLIMTTEILR+MLYRG++++R+V +V
Sbjct: 204 KALSNQKFREFTDEFKDV--GLVTGDVTINPSASCLIMTTEILRNMLYRGSEIMREVGWV 261
Query: 429 IFDEVHYVNDQTRGVVWEEVIIMLPQHVKFILLSATVPNTFEFANWVGRTKQKNIYVIST 488
+FDE+HY+ D+ RGVVWEE +I+LP +V+++ LSAT+PN +FA WV ++ +V+ T
Sbjct: 262 VFDEIHYMRDKERGVVWEETLILLPDNVRYVFLSATIPNARQFAEWVCHLHKQPCHVVYT 321
Query: 489 PKRPVPLEINIWAK--KKVIPVINDKREFLPQNFREHKELLTAXXXXXXXXXXXXXXXXX 546
RP PL+ I+ + ++++K +F NF +L
Sbjct: 322 DYRPTPLQHYIFPAGGDGIHLIVDEKGQFKEDNFTTAMAVLANAGEAG------------ 369
Query: 547 XQKTITKGSKGVGAKGSNMSTFYKYDGASKTTWYDLLKNLRANDLLPAVVFVFSKKRCEE 606
K KG G G KG+N A +T + ++K + + P ++F FSKK CE
Sbjct: 370 --KGDQKGRHG-GIKGTN---------AGQTNIFKIVKMIMERNFAPVIIFSFSKKDCEI 417
Query: 607 YADSIEAADLLTAKERSAIHIFIEKSISRLRKDDRELPQITKIRSLLSRGIAVHHGGLLP 666
YA + D T E+ + ++ L ++DR LPQ+ + LL RGI +HHGGLLP
Sbjct: 418 YAMQMAKLDFNTPDEKKLVDEVFNNAMDVLTEEDRRLPQVENVLPLLRRGIGIHHGGLLP 477
Query: 667 IVKELIEILFAKGFVKLLFATETFAMGLNLPTRTVVFSEIQKHDGEKKRYLLPGEFTQMA 726
I+KE IEILF +G +K LFATETFAMGLN+P RTV+F+ +K DG+K R++ GE+ QMA
Sbjct: 478 ILKETIEILFGEGLIKALFATETFAMGLNMPARTVLFTAPRKFDGKKFRWISSGEYIQMA 537
Query: 727 GRAGRRGKDKTGTVIVMSYSRPIDEASFKDVSLGVPTRLQSQFRLTYNMILNLLRIEALR 786
GRAGRRG D G VI+M + A +D+ G + S F LTYNM+LNLLR+E +
Sbjct: 538 GRAGRRGLDDKGIVILM-IDEKVSPAVGRDIVQGKADPINSAFHLTYNMVLNLLRVEEIN 596
Query: 787 VEEMIKFSFSENSKETLKPEQEKEIKELQSKVDSIDISEFSEETVKEYESVHNLL 841
E M++ SF + + P ++++ +++ + I + E + Y + + L
Sbjct: 597 PEYMLERSFYQFQNQAALPGLHDQVEQKTLELNKLTIKD--EHNIASYHHIRSQL 649
>SPAC17H9.02 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box superfamily
Length = 1030
Score = 420 bits (1080), Expect = e-117
Identities = 253/641 (39%), Positives = 383/641 (59%), Gaps = 51/641 (7%)
Query: 222 DKLSNLNNSQENKKEVEKLRELEYQKMASTAVVDEALGSSEIDKLLPVDLNFARHIRTFN 281
D+ S+ +NS+E + +E L + K + + + SE L P+ L RH R+F
Sbjct: 37 DEKSSFSNSEE-ESIIENLSDSSVNKEYAKNSLKLSDAVSESKYLNPL-LKDKRHDRSFA 94
Query: 282 NTAEKVEWAHMVDLNSNMDNF--NELVPN--PARTWPFELDTFQKEAVYHLEQGDSVFVA 337
H V + + D N+ +P+ PA+T+PFELD FQ A+ +E+ +SV V+
Sbjct: 95 --------LHKVVVPDDYDYIPLNKHIPSDPPAKTYPFELDPFQSTAIKCVERMESVLVS 146
Query: 338 AHTSAGKTVVAEYAIAMSKRNMTKTIYTSPIKALSNQKFRDFKEDFDDVDVGLITGDVQI 397
AHTSAGKTV+AEYAIA + +N + IYTSPIK+LSNQK+R+ +F DV GL+TGDV I
Sbjct: 147 AHTSAGKTVIAEYAIAQALKNRQRVIYTSPIKSLSNQKYRELLSEFGDV--GLMTGDVSI 204
Query: 398 NPEADCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQTRGVVWEEVIIMLPQHVK 457
NP A CLIMTTEILR+MLY+ ++++ ++ +VIFDEVHY+ D+ RGVVWEE +I+LP ++
Sbjct: 205 NPSASCLIMTTEILRAMLYKNSEIMHEIAWVIFDEVHYMRDKDRGVVWEETLILLPDAIR 264
Query: 458 FILLSATVPNTFEFANWVGRTKQKNIYVISTPKRPVPLEINIWAKKK--VIPVINDKREF 515
FI LSAT+PN +FA W+ ++ +V+ T RP PL+ I+ + + ++++K +F
Sbjct: 265 FIFLSATLPNALQFARWISEIHKQPCHVVYTDYRPTPLQHFIYPQGADGIYMLVDEKNKF 324
Query: 516 LPQNFREHKELLTAXXXXXXXXXXXXXXXXXXQKTITKGSKGVGAKGSNMSTFYKYDGAS 575
+NF++ E+L Q+ +K SK V K S++
Sbjct: 325 KTENFKKVLEVLD---------------HSTRQENYSKSSKKV-KKSSSLER-------- 360
Query: 576 KTTWYDLLKNLRANDLLPAVVFVFSKKRCEEYADSIEAADLLTAKERSAIHIFIEKSISR 635
++ + +N P +VF FSKK CE A DL + + + + +I++
Sbjct: 361 ------IINMVLSNRYDPIIVFCFSKKECEINAHQFGKLDLNDTENKELVTEIFDSAINQ 414
Query: 636 LRKDDRELPQITKIRSLLSRGIAVHHGGLLPIVKELIEILFAKGFVKLLFATETFAMGLN 695
L ++DR L Q ++RSLL RGI +HH GLLPI+KEL+EILF +G V++LFATETF++GLN
Sbjct: 415 LSEEDRGLRQFEEMRSLLLRGIGIHHSGLLPILKELVEILFQEGLVRILFATETFSIGLN 474
Query: 696 LPTRTVVFSEIQKHDGEKKRYLLPGEFTQMAGRAGRRGKDKTGTVIVMSYSRPIDEASFK 755
+P RTV+F++ QK G R+L GE+ QM+GRAGRRG D G IV+ + IDE + +
Sbjct: 475 MPARTVLFTKAQKFSGNNFRWLTSGEYMQMSGRAGRRGIDTKGLSIVI-LDQSIDEQAAR 533
Query: 756 DVSLGVPTRLQSQFRLTYNMILNLLRIEALRVEEMIKFSFSENSKETLKPEQEKEIKELQ 815
+ G L S F L+Y MILNL+RIE + E+++K SF + P ++E+ +L+
Sbjct: 534 CLMNGQADVLNSAFHLSYGMILNLMRIEEISPEDILKKSFYQFQNMESLPLIKEELMQLK 593
Query: 816 SKVDSIDISEFSEETVKEYESVHNLLTGYRQACVDIISEID 856
++ SI+I +E VKE+ + L Y + +++ D
Sbjct: 594 NEETSINIP--NETAVKEFHDLKLQLEKYGEEIQKVMTHPD 632
>Hs14721269 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box superfamily
Length = 1042
Score = 409 bits (1050), Expect = e-113
Identities = 236/555 (42%), Positives = 332/555 (59%), Gaps = 44/555 (7%)
Query: 306 VPNPARTWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMSKRNMTKTIYT 365
V A+ +PF LD FQ+EA+ ++ SV V+AHTSAGKTV AEYAIA++ R + I+T
Sbjct: 129 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFT 188
Query: 366 SPIKALSNQKFRDFKEDFDDVDVGLITGDVQINPEADCLIMTTEILRSMLYRGADLIRDV 425
SPIKALSNQK+R+ E+F DV GL+TGDV INP A CL+MTTEILRSMLYRG++++R+V
Sbjct: 189 SPIKALSNQKYREMYEEFQDV--GLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREV 246
Query: 426 EFVIFDEVHYVNDQTRGVVWEEVIIMLPQHVKFILLSATVPNTFEFANWVGRTKQKNIYV 485
+VIFDE+HY+ D RGVVWEE II+LP +V ++ LSAT+PN +FA W+ ++ +V
Sbjct: 247 AWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHV 306
Query: 486 ISTPKRPVPLEINIWAK--KKVIPVINDKREFLPQNFREHKELLTAXXXXXXXXXXXXXX 543
I T RP PL+ I+ + V+++ +F NF ++L
Sbjct: 307 IYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLA--------- 357
Query: 544 XXXXQKTITKGSKGVGAKG-SNMSTFYKYDGASKTTWYDLLKNLRANDLLPAVVFVFSKK 602
K KG KG G KG SN+ + ++K + + P ++F FSKK
Sbjct: 358 -----KGDQKGRKG-GTKGPSNV--------------FKIVKMIMERNFQPVIIFSFSKK 397
Query: 603 RCEEYADSIEAADLLTAKERSAIHIFIEKSISRLRKDDRELPQITKIRSLLSRGIAVHHG 662
CE YA + D T +E+ + +I L +D++LPQ+ + LL RGI +HHG
Sbjct: 398 DCEAYALQMTKLDFNTDEEKKMVEEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHG 457
Query: 663 GLLPIVKELIEILFAKGFVKLLFATETFAMGLNLPTRTVVFSEIQKHDGEKKRYLLPGEF 722
GLLPI+KE IEILF++G +K LFATETFAMG+N+P RTV+F+ +K DG+ R++ GE+
Sbjct: 458 GLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEY 517
Query: 723 TQMAGRAGRRGKDKTGTVIVMSYSRPIDEASFKDVSLGVPTRLQSQFRLTYNMILNLLRI 782
QM+GRAGRRG D G VI+M + K + G L S F LTYNM+LNLLR+
Sbjct: 518 IQMSGRAGRRGMDDRGIVILM-VDEKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRV 576
Query: 783 EALRVEEMIKFSFSENSKETLKPEQEKEIKELQSKVDSIDISEFSEETVKEYESVHNLLT 842
E + E M++ SF + P +++K + + + I I +EE+V Y +
Sbjct: 577 EEINPEYMLEKSFYQFQHYRAIPGVVEKVKNSEEQYNKIVIP--NEESVVIYYKI----- 629
Query: 843 GYRQACVDIISEIDE 857
RQ + EI+E
Sbjct: 630 --RQQLAKLGKEIEE 642
>At2g06990 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box superfamily
Length = 996
Score = 407 bits (1045), Expect = e-113
Identities = 237/589 (40%), Positives = 349/589 (59%), Gaps = 32/589 (5%)
Query: 312 TWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMSKRNMTKTIYTSPIKAL 371
T+PF+LD FQ +V LE+ +S+ V+AHTSAGKT VAEYAIAM+ R+ + IYTSP+KAL
Sbjct: 65 TYPFKLDPFQSVSVACLERKESILVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKAL 124
Query: 372 SNQKFRDFKEDFDDVDVGLITGDVQINPEADCLIMTTEILRSMLYRGADLIRDVEFVIFD 431
SNQK+R+ + +F DV GL+TGDV ++P A CL+MTTEILR+MLYRG++++++V +VIFD
Sbjct: 125 SNQKYRELQHEFKDV--GLMTGDVTLSPNASCLVMTTEILRAMLYRGSEVLKEVAWVIFD 182
Query: 432 EVHYVNDQTRGVVWEEVIIMLPQHVKFILLSATVPNTFEFANWVGRTKQKNIYVISTPKR 491
E+HY+ D+ RGVVWEE II LP +K + LSAT+ N EFA W+ ++ +V+ T R
Sbjct: 183 EIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICYLHKQPCHVVYTDFR 242
Query: 492 PVPLEINIWAKKK--VIPVINDKREFLPQNFREHKELLTAXXXXXXXXXXXXXXXXXXQK 549
P PL+ + + V++D +F +F + ++ +K
Sbjct: 243 PTPLQHYAFPMGGGGLYLVVDDNEQFREDSFVKMQDTFPKPKSNDG------------KK 290
Query: 550 TITKGSKGVGAKGSNMSTFYKYDGASKTTWYDLLKNLRANDLLPAVVFVFSKKRCEEYAD 609
+ S G GAKG G + Y ++K + P ++F FS++ CE++A
Sbjct: 291 SANGKSGGRGAKGGG--------GPGDSDVYKIVKMIMERKFEPVIIFSFSRRECEQHAL 342
Query: 610 SIEAADLLTAKERSAIHIFIEKSISRLRKDDRELPQITKIRSLLSRGIAVHHGGLLPIVK 669
S+ D T +E+ + ++ L ++DR LP I + LL RGIAVHH GLLP++K
Sbjct: 343 SMSKLDFNTDEEKEVVEQVFNNAMQCLNEEDRSLPAIELMLPLLQRGIAVHHSGLLPVIK 402
Query: 670 ELIEILFAKGFVKLLFATETFAMGLNLPTRTVVFSEIQKHDGEKKRYLLPGEFTQMAGRA 729
EL+E+LF +G VK LFATETFAMGLN+P +TVVF+ ++K DG+ RY+ GE+ QM+GRA
Sbjct: 403 ELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRA 462
Query: 730 GRRGKDKTGTVIVMSYSRPIDEASFKDVSLGVPTRLQSQFRLTYNMILNLL-RIEA-LRV 787
GRRGKD+ G I+M ++ + +D+ LG P L S FRL+Y ILNLL R E
Sbjct: 463 GRRGKDERGICIIM-IDEQMEMNTLRDMMLGKPAPLLSTFRLSYYTILNLLSRAEGQFTA 521
Query: 788 EEMIKFSFSENSKETLKPEQEKEIKELQSKVDSIDISEFSEETVKEYESVHNLLTGYRQA 847
E +I+ SF + E P+ ++ +L+ + ++ S E V EY HNL +
Sbjct: 522 EHVIRHSFHQFQHEKALPDIGNKVSKLEEEAAILNAS--GEAEVAEY---HNLQFDIAKH 576
Query: 848 CVDIISEIDESRELGKRLSRGRFIFYRKNDGNPVLGLVTRIDPPNGVCT 896
++SEI + L GR + R+ + G+V + + V T
Sbjct: 577 EKKLMSEIIRPERVLCFLDTGRLVKIREGGTDWGWGVVVNVVKNSSVGT 625
>ECU04g0910 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box superfamily
Length = 933
Score = 389 bits (998), Expect = e-107
Identities = 217/516 (42%), Positives = 309/516 (59%), Gaps = 53/516 (10%)
Query: 310 ARTWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMSKRNMTKTIYTSPIK 369
A+ + FELD FQK +V LE+ +SV V+AHTS+GKTVVAEYAIAMS R+ + +YTSPIK
Sbjct: 64 AKNYLFELDDFQKISVCSLERDESVLVSAHTSSGKTVVAEYAIAMSLRSNQRVVYTSPIK 123
Query: 370 ALSNQKFRDFKEDFDDVDVGLITGDVQINPEADCLIMTTEILRSMLYRGADLIRDVEFVI 429
ALSNQK+R+ +F DV GL+TGDV INP A CL+MTTEILR+MLYRG +++R++ ++I
Sbjct: 124 ALSNQKYRELLSEFSDV--GLMTGDVTINPTASCLVMTTEILRNMLYRGGEVVREIHWII 181
Query: 430 FDEVHYVNDQTRGVVWEEVIIMLPQHVKFILLSATVPNTFEFANWVGRTKQKNIYVISTP 489
FDE+HY+ D+ RGVVWEE II+LP+HV+ + LSAT+PN EFA W+ + + ++V+ T
Sbjct: 182 FDEIHYMRDKERGVVWEETIILLPKHVRMVFLSATIPNALEFAEWISHIQSQVVHVVYTE 241
Query: 490 KRPVPLEINIWAKKKVIPVINDKREFLPQNFREHKELLTAXXXXXXXXXXXXXXXXXXQK 549
KR PL ++ + K+ + + K F NF +
Sbjct: 242 KRVTPL-VHYFRSNKLYKIKDAK--FHKSNF------------------------LSAMR 274
Query: 550 TITKGSKGVGAKGSNMSTFYKYDGASKTTWYDLLKNLRANDLLPAVVFVFSKKRCEEYAD 609
+I K + G G + + LP VVF F +K CE +A
Sbjct: 275 SIRKRNVGPREVGEAI----------------------GDASLPVVVFSFKRKDCERFAM 312
Query: 610 SIEAADLLTAKERSAIHIFIEKSISRLRKDDRELPQITKIRSLLSRGIAVHHGGLLPIVK 669
++ LT +E + +I LRK+DRE+P I I LL RGI +HH GLLPI+K
Sbjct: 313 KLDGR-YLTDEEARTVQTIFTNAIMSLRKEDREIPIIQNILPLLMRGIGIHHSGLLPIIK 371
Query: 670 ELIEILFAKGFVKLLFATETFAMGLNLPTRTVVFSEIQKHDGEKKRYLLPGEFTQMAGRA 729
E++EILF +G +K+LFATETF++GLN+P ++VVF+ ++K DGE R + GE+ QM+GRA
Sbjct: 372 EVVEILFQEGLLKVLFATETFSIGLNMPAKSVVFTALKKFDGEAMRLVSSGEYIQMSGRA 431
Query: 730 GRRGKDKTGTVIVMSYSRPIDEASFKDVSLGVPTRLQSQFRLTYNMILNLLRIEALRVEE 789
GRRG D G +++ S PI + L S FRLTYNM+LNL+R+E L
Sbjct: 432 GRRGIDSMG-IVISIISEPITYKEASRLFSASSDNLVSAFRLTYNMLLNLMRVEGLDPLY 490
Query: 790 MIKFSFSENSKETLKPEQEKEIKELQSKVDSIDISE 825
+I SF +E+ + + +++ I+ +E
Sbjct: 491 LISRSFHHFQSYKKALAEEETLHLMYRRLEDIEPNE 526
>7301051 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-box
superfamily
Length = 474
Score = 304 bits (779), Expect = 4e-82
Identities = 179/376 (47%), Positives = 233/376 (61%), Gaps = 35/376 (9%)
Query: 125 DVVNANSANSLSLTRKINHQGDLIRGTTNQLPFTPGGLGQDVVETTSESLQINAESAGKL 184
+ V AN+ NS+S+ R+ D RG+ + PF PGG + + QI A
Sbjct: 72 EAVGANANNSMSMQREPGLLEDATRGSHSNFPFWPGGFDE-------QRQQIAALDVSNF 124
Query: 185 LPRDKFGLFNVPPGLERGI---------VPRVEAGSNDDEKQFEEIDKLSNLNNSQENKK 235
DK L VPPG G +P V A ++ +D L NL + ++
Sbjct: 125 QFGDK--LLTVPPGFSSGYDFFQSQSVTLPPVVADPSN-------VDLLENLEQDLDVQE 175
Query: 236 EVEKLRELEYQKMASTAVVDEA---LGSSEI----DKLLPVDLNFARHIRTFNNTAEKVE 288
++ R E + ++ L S E D ++ DL +I T K +
Sbjct: 176 WMKLTRSEETSSTGTPKSPKQSNVQLPSEEFRDVDDHIMKADLKPVLNISTTTKNF-KSD 234
Query: 289 WAHMVDLNSNMDNFNELVPNPARTWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVA 348
WA MVD++ ++NF E +P PA +PFELD FQK+A+ LEQ VFVAAHTSAGKTVVA
Sbjct: 235 WAEMVDISQPINNFKEQIPCPAMDFPFELDVFQKQAILKLEQRQYVFVAAHTSAGKTVVA 294
Query: 349 EYAIAMSKRNMTKTIYTSPIKALSNQKFRDFKEDFDDVDVGLITGDVQINPEADCLIMTT 408
EYAIA+SKR++T+TIYTSPIKALSNQK+RDF++ F DV GLITGD+QI P A CLIMTT
Sbjct: 295 EYAIALSKRDLTRTIYTSPIKALSNQKYRDFRKTFKDV--GLITGDLQIEPTASCLIMTT 352
Query: 409 EILRSMLYRGADLIRDVEFVIFDEVHYVNDQTRGVVWEEVIIMLPQHVKFILLSATVPNT 468
EILRSMLY G+D+ RD+E+VIFDEVHY+N+ RG VWEEVII+LP+HV I+LSATVPNT
Sbjct: 353 EILRSMLYCGSDVTRDLEWVIFDEVHYINNPERGHVWEEVIILLPEHVNIIMLSATVPNT 412
Query: 469 FEFANWVGRTKQKNIY 484
E A+WVG TK++ +Y
Sbjct: 413 LELADWVGSTKKRKVY 428
>At1g70070 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-box
superfamily
Length = 1171
Score = 289 bits (739), Expect = 2e-77
Identities = 201/610 (32%), Positives = 315/610 (50%), Gaps = 44/610 (7%)
Query: 294 DLNSNMDNFNELVPNPARTWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIA 353
D M + +EL+ + F +D FQ+ A+ +G SV V+A TS+GKT++AE A
Sbjct: 136 DFGVEMIDIDELIS----IYDFRIDKFQRLAIEAFLRGSSVVVSAPTSSGKTLIAEAAAV 191
Query: 354 MSKRNMTKTIYTSPIKALSNQKFRDFKEDFDDVDVGLITGDVQINPEADCLIMTTEILRS 413
+ + YT+P+KALSNQKFR+F+E F D +VGL+TGD IN +A +IMTTEILR+
Sbjct: 192 STVAKGRRLFYTTPLKALSNQKFREFRETFGDDNVGLLTGDSAINKDAQIVIMTTEILRN 251
Query: 414 MLYRGADL------IRDVEFVIFDEVHYVNDQTRGVVWEEVIIMLPQHVKFILLSATVPN 467
MLY+ + + V+ ++ DEVHY++D +RG VWEE++I P+ V+ I LSATV N
Sbjct: 252 MLYQSVGMASSGTGLFHVDAIVLDEVHYLSDISRGTVWEEIVIYCPKEVQLICLSATVAN 311
Query: 468 TFEFANWVGRTKQKNIYVISTPKRPVPLEINIWAKKKVIPVINDKREFLPQNFREHKELL 527
E A W+G K V ST +RPVPL K ++P++++K + + + L
Sbjct: 312 PDELAGWIGEIHGKTELVTST-RRPVPLTWYFSTKHSLLPLLDEKGINVNRKLSLNYLQL 370
Query: 528 TAXXXXXXXXXXXXXXXXXXQK---TITKGSKGVGAKGSNMSTFYKYDGASKTTWYDLLK 584
+A ++ T V + + K + D L
Sbjct: 371 SASEARFRDDDDGYRKRRSKKRGGDTSYNNLVNVTDYPLSKNEINKIRRSQVPQISDTLW 430
Query: 585 NLRANDLLPAVVFVFSKKRCEEYADSIEAADLLTAKERSAIHIFIEKSISRLRKDDRELP 644
+L+ ++LPA+ F+F+++ C+ +E LL E+S + + ++K RE
Sbjct: 431 HLQGKNMLPAIWFIFNRRGCDAAVQYVENFQLLDDCEKSEVELALKKFRVLYPDAVRESA 490
Query: 645 QITKIRSLLSRGIAVHHGGLLPIVKELIEILFAKGFVKLLFATETFAMGLNLPTRTVVFS 704
+ + LL RGIA HH G LP+ K IE LF +G VK++FATET A G+N+P RT V S
Sbjct: 491 E----KGLL-RGIAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVIS 545
Query: 705 EIQKHDGEKKRYLLPGEFTQMAGRAGRRGKDKTGTVIVMSYSRPIDEASFKDVSLGVPTR 764
+ K G ++ L P E QMAGRAGRRG D+ G +++ + E K V GV
Sbjct: 546 SLSKKAGNERIELGPNELYQMAGRAGRRGIDEKGYTVLVQTAFEGAEECCKLVFAGVKP- 604
Query: 765 LQSQFRLTYNMILNLLR----------IEALRV----------EEMIKFSFSENSKETLK 804
L SQF +Y M+LNL+ EA +V +++++ SF +
Sbjct: 605 LVSQFTASYGMVLNLVAGSKVTRKSSGTEAGKVLQAGRSLEEAKKLVEKSFGNYVSSNVT 664
Query: 805 PEQEKEIKELQSKVDSIDISEFSEETVKEYESVHNLLTGYRQACV---DIISEIDESREL 861
++E+ E+ +K++ + SE S+E + + Y++ V ++ E + E
Sbjct: 665 VAAKQELAEIDNKIEILS-SEISDEAIDKKSRKLLSARDYKEITVLKEELREEKRKRAEQ 723
Query: 862 GKRLSRGRFI 871
+R+ RF+
Sbjct: 724 RRRMELERFL 733
>ECU05g0940 [R] KOG0949 Predicted helicase DEAD-box superfamily
Length = 1337
Score = 114 bits (284), Expect = 1e-24
Identities = 137/547 (25%), Positives = 223/547 (40%), Gaps = 123/547 (22%)
Query: 315 FELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAI--AMSKRNMTKTIYTSPIKALS 372
F+ D +Q + ++Q S ++A TSAGKT + YAI + + + I+ P KAL
Sbjct: 514 FKPDEWQVRLLDLVDQNKSAVISAPTSAGKTFICFYAIEKVLRESDTDVVIFCLPTKALV 573
Query: 373 NQKFRDF------KEDFDDVDVGLITGDVQINP-EADCLIMTTEILRSMLYRGAD-LIRD 424
NQ D K + G + + I P LI+ +L S+L I
Sbjct: 574 NQVSADIYARFTPKVNSKTFLQGSLMKEFSIAPWNCQVLIVIPSLLESVLNTPPKGFIER 633
Query: 425 VEFVIFDEVHYVNDQTRGVVWEEVIIMLPQHVKFILLSATVPNTFEFANW---VGRTKQK 481
+ ++I DEVH + + G+ E ++ + P ++LSAT+ N F W + R K +
Sbjct: 634 IRYIIVDEVHKIGSEEMGIPIERIVHLSP--CPMLVLSATLGNIEGFYGWMKKIEREKGR 691
Query: 482 NIYVISTPKRPVPLEINIWAKK---KVIPVIN---------------DKREFLPQNFREH 523
+ ++S +R L+ +++ K++P+ N + FLP+
Sbjct: 692 DCELVSYGERYCELKPYVYSHSFSPKMVPINNLFAYSYSHIKRFGFGNDISFLPEELLHL 751
Query: 524 KELLTAXXXXXXXXXXXXXXXXXXQKTITKGSKGVGAKGSNM-STF-------------- 568
+ + A ++ K VG G ++ TF
Sbjct: 752 YDSICAVLRKDQEHLISKITPENFFRSNIVTKKEVGEYGRHLLETFQGMIEGDLLTQKQV 811
Query: 569 -YKYDGASKTTW------------------YDLLKNLRANDLLPAVVFV----FSKKRCE 605
Y Y +K T DLL L+ ++ P +VF F+ K
Sbjct: 812 KYVYKLQTKETRKAFESVVDYSSEYLLENILDLLMELKERNMFPCIVFNTDRDFASKLAL 871
Query: 606 EYADSIEAADLLTAKER----------------SAIHIFIEKSIS-----RLRKD----- 639
+ +E+ D+ K++ +IE+SI+ ++R D
Sbjct: 872 KVHRQLESMDMEKKKDKLIEKMKKEAKRARDLEKTKESWIEESIAAEKSFQMRNDKKNIK 931
Query: 640 -----------DRELPQITKIRS--------LLSRGIAVHHGGLLPIVKELIEILFAKGF 680
D EL + TK +L RG+ VHH + + L+EILF +
Sbjct: 932 YTFLDPLTKLTDYELEEETKFIKNTDFEFIDMLYRGMGVHHAHMNRKYRSLVEILFRQKH 991
Query: 681 VKLLFATETFAMGLNLPTRTVVFSEIQKHDGEKKRYLLPGEFTQMAGRAGRRGKDKTGTV 740
+++LFATET A+G+N+P RTVVF+ G+ + L P + QMAGRAGRRG D G V
Sbjct: 992 LQVLFATETLALGINMPCRTVVFA------GDSLQ-LDPMNYKQMAGRAGRRGFDTLGNV 1044
Query: 741 IVMSYSR 747
+ M R
Sbjct: 1045 VFMGIPR 1051
>Hs18548973 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily
Length = 731
Score = 111 bits (278), Expect = 5e-24
Identities = 137/555 (24%), Positives = 229/555 (40%), Gaps = 87/555 (15%)
Query: 214 DEKQFEEIDKLSNLNNSQEN-----KKEVEKLRELEYQKMASTAVVDEALGSSEID-KLL 267
D+ QF + K ++ S EN EVEKL ++ S D L S K++
Sbjct: 196 DKVQFSTMLKSNDCLFSLENLFFEKPDEVEKLFKISDNIHGSAYSNDNELDSHIGSVKIV 255
Query: 268 PVDLNFARHIRTFNNTAEKVEWAHMVDLNSNMDNFNELVPNPARTWPFELDTFQKEAVYH 327
++N + R ++N+ +K +++ V +N + +E+ F+ +F H
Sbjct: 256 QTEMNKGKS-RNYSNSKQKFQYSANVFTANNAFSASEIGEGM-----FKAPSFSVAFQPH 309
Query: 328 LEQGDSVFVAAHTSAGKTVVAEYAIAMSKRNMT------KTIYTSPIKALSNQKFRDFKE 381
Q + + A T +GKTVV E AI + K +Y +PIKAL +Q+F D+KE
Sbjct: 310 DIQDRNFVICAPTGSGKTVVFELAITRLLMEVPLPWLNIKIVYMAPIKALCSQRFDDWKE 369
Query: 382 DFDDVDVGL--ITGDVQINP-----EADCLIMTTEILRSML--YRGADLIRDVEFVIFDE 432
F + + +TGD ++ A ++ T E SM +R L++ V + DE
Sbjct: 370 KFGPIGLNCKELTGDTVMDDLFEIQHAHIIMTTPEKWDSMTRKWRDNSLVQLVRLFLIDE 429
Query: 433 VHYVNDQTRGVVWEEVIIMLPQHVKFILLSATVPNTFEFANWVGRTKQKNIYVISTPKRP 492
VH V D+ RG E V+ + +T Q +
Sbjct: 430 VHIVKDENRGPTLEVVVSRM------------------------KTVQSVSQTLKNTSTA 465
Query: 493 VPLEINIWAKKKVIPVINDKREFLPQNFREHKELLTAXXXXXXXXXXXXXXXXXXQKTIT 552
+P+ A IP D E+L R L QK +
Sbjct: 466 IPMRFV--AVSATIPNAEDIAEWLSDGERPAVCL----------KMDESHRPVKLQKVV- 512
Query: 553 KGSKGVGAKGSNMSTFYKYDGASKTTWYDLLKNLRA-NDLLPAVVFVFSKKRCEEYADSI 611
+G S+ T +K+D T Y + ++ +D P +VF ++K ++ A +
Sbjct: 513 -----LGFPCSSNQTEFKFD---LTLNYKIASVIQMYSDQKPTLVFCATRKGVQQAASVL 564
Query: 612 --EAADLLTAKERSAIHIFIEKSISRLRKDDRELPQITKIRSLLSRGIAVHHGGLLPIVK 669
+A ++T +++ + +K +R +K+R +L G A HH G+ +
Sbjct: 565 VKDAKFIMTVEQKQRL----QKYAYSVRD--------SKLRDILKDGAAYHHAGMELSDR 612
Query: 670 ELIEILFAKGFVKLLFATETFAMGLNLPTRTVVFSEIQKHDGEKKRYLLPGEFTQMAGRA 729
+++E F G + +LF T T AMG+NLP VV + G + QM GRA
Sbjct: 613 KVVEGAFTVGDLPVLFTTSTLAMGVNLPAHLVVIKSTMHYAGGLFEEYSETDILQMIGRA 672
Query: 730 GRRGKDKTGTVIVMS 744
GR D T T ++M+
Sbjct: 673 GRPQFDTTATAVIMT 687
>SPAC9.03c [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily
Length = 2176
Score = 105 bits (263), Expect = 3e-22
Identities = 118/490 (24%), Positives = 205/490 (41%), Gaps = 114/490 (23%)
Query: 285 EKVEWAHMVDLNSNMDNFNELVPNPARTWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGK 344
E EW+H LN+ N + + +P T +++ + A T AGK
Sbjct: 505 ELPEWSHQAFLNTQSLNRIQ-----SHLYPIAFGT-----------DENILLCAPTGAGK 548
Query: 345 TVVAEYAI------------AMSKRNMTKTIYTSPIKALSNQKFRDFKEDFD--DVDVGL 390
T VA I + + +N K +Y +P+KAL + +F + ++ V
Sbjct: 549 TNVAMLCILNELQKHLREDLSFNLQNF-KIVYIAPLKALVQEMVNNFSKRLTPYNIRVAE 607
Query: 391 ITGDVQINP----EADCLIMTTEILRSMLYRGADL--IRDVEFVIFDEVHYVNDQTRGVV 444
+TGD Q+ E ++ T E + + DL + V VI DEVH ++D+ RG V
Sbjct: 608 LTGDSQLTKQQISETQIIVTTPEKWDIITRKANDLSYVNLVRLVIIDEVHLLHDE-RGPV 666
Query: 445 WEEVIIMLPQH-------VKFILLSATVPNTFEFANWVGRTKQKNIYVISTPKRPVPLEI 497
E ++ + +H V+ + LSAT+PN + A+++ +K ++ + RP PL
Sbjct: 667 LESIVARIFRHQEETLEQVRLVGLSATLPNYTDVASFLHVDPKKGLFYFDSTYRPCPL-- 724
Query: 498 NIWAKKKVIPVINDKREFLPQNFREHKELLTAXXXXXXXXXXXXXXXXXXQKTITKGSKG 557
K+EF+ G
Sbjct: 725 --------------KQEFI----------------------------------------G 730
Query: 558 VGAKGSNMSTFYKYDGASKTTWYDLLKNLRANDLLPAVVFVFSKKRCEEYADSIEAADLL 617
+ K + F + ++ + ++++ N +L +FV S+K + A I L
Sbjct: 731 ITEK----TPFKRMQTTNEACYEKVMQHAGKNQVL---IFVHSRKETAKTARFIRDKAL- 782
Query: 618 TAKERSAIHIFIEKSISR-LRKDDRELPQITKIRSLLSRGIAVHHGGLLPIVKELIEILF 676
+E + H+ + SR + + + + ++ LL G A+HH G+ ++ E LF
Sbjct: 783 --EEETIGHLLRSDAASREILRAEADSTSDENLKDLLPYGFAIHHAGMRREDRQTSEDLF 840
Query: 677 AKGFVKLLFATETFAMGLNLPTRTVVFSEIQKHDGEKKRY--LLPGEFTQMAGRAGRRGK 734
A G +++L +T T A G+NLP TV+ Q + EK + L P + QM GRAGR
Sbjct: 841 ADGTIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGIWTELSPQDVLQMLGRAGRPQF 900
Query: 735 DKTGTVIVMS 744
D G I+++
Sbjct: 901 DTYGEGIIIT 910
Score = 63.2 bits (152), Expect = 2e-09
Identities = 60/221 (27%), Positives = 106/221 (47%), Gaps = 25/221 (11%)
Query: 298 NMDNFNELVPNPARTWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIA--MS 355
N +F L PN + F +VY + DSVF+ A +GKTV AE A+ S
Sbjct: 1351 NNPSFISLYPNFKFFNKIQTQVFN--SVY--KTNDSVFIGAPNGSGKTVCAELALLHHWS 1406
Query: 356 KRNMTKTIYTSPIKALSNQKFRDFKEDFDDVDVGLI----TG----DVQINPEADCLIMT 407
+ + +Y +PI+ + ++++ ++ F D+ G + TG D+++ AD + T
Sbjct: 1407 QEDYGTAVYIAPIQEIVDRRYEEWYGKFSDLGDGKVLVKLTGERSQDLKLIQVADLIFCT 1466
Query: 408 TEILRSM--LYRGADLIRDVEFVIFDEVHYVNDQTRGVVWEEVI-------IMLPQHVKF 458
S+ +R I+ V+F I DE+ + G ++E VI + L ++++
Sbjct: 1467 PSQWDSLSKRWRSMRSIQKVDFYICDELQLLGG-FYGPLYEIVISRIRYMAVQLEKNIRV 1525
Query: 459 ILLSATVPNTFEFANWVGRTKQKNIYVISTPKRPVPLEINI 499
+ LS +V N + W+G T + I+ S RP PL I++
Sbjct: 1526 VGLSVSVANARDLGEWLG-TSPQCIFNFSPKDRPNPLTIHL 1565
>7300033 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily
Length = 1809
Score = 82.4 bits (202), Expect = 3e-15
Identities = 61/213 (28%), Positives = 109/213 (50%), Gaps = 34/213 (15%)
Query: 308 NPARTWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAI--AMSKRNMTKTIYT 365
NP +T F +YH + ++V + A T +GKT+VAE AI A+++ K +Y
Sbjct: 964 NPIQTQIFH-------CLYHTD--NNVLLGAPTGSGKTIVAEIAIFRALNQNPKCKVVYI 1014
Query: 366 SPIKALSNQKFRDFKEDFDDVDVGL--------ITGDVQINPEADCLIMTTE----ILRS 413
+P+KAL ++ D+++ F +GL +T D+Q E+ ++ T E I RS
Sbjct: 1015 APLKALVKERIADWEQRFQRSSLGLKVVELTGDVTPDIQAIRESQLIVTTPEKWDGISRS 1074
Query: 414 MLYRGADLIRDVEFVIFDEVHYVNDQTRGVVWEEVII---MLPQH----VKFILLSATVP 466
++ + ++ V ++ DE+H + + RG V E ++ + H ++ + LS +
Sbjct: 1075 --WQTREYVQHVSLIVIDEIHLLGED-RGPVIEVIVSRTNFISSHTGRAIRIVGLSTALA 1131
Query: 467 NTFEFANWVGRTKQKNIYVISTPKRPVPLEINI 499
N + ANW+G K +Y RPVPL+++I
Sbjct: 1132 NAQDLANWLGINKM-GLYNFKPSVRPVPLQVHI 1163
Score = 69.3 bits (168), Expect = 3e-11
Identities = 51/158 (32%), Positives = 82/158 (51%), Gaps = 17/158 (10%)
Query: 593 PAVVFVFSKKRCEEYADSIEAADLLT-----AKERSAIHIFIEKSISRLRKDDRELPQIT 647
P +VFV S+++ + A DL+T + + +HI E I + ++ RE
Sbjct: 1194 PTIVFVSSRRQTR-----LTALDLITFVAGESNPKQFLHI-PEDEIELILQNIRE----Q 1243
Query: 648 KIRSLLSRGIAVHHGGLLPIVKELIEILFAKGFVKLLFATETFAMGLNLPTRTVVFSEIQ 707
++ L+ GI +HH GL ++ +E LF +++L AT T A G+NLP VV +
Sbjct: 1244 NLKFCLAFGIGLHHAGLQEQDRKCVEELFLNRKIQILVATATLAWGVNLPAHLVVIKGTE 1303
Query: 708 KHDGEKKRYL-LP-GEFTQMAGRAGRRGKDKTGTVIVM 743
DG+ K+Y+ +P + QM GRAGR D G +V+
Sbjct: 1304 YFDGKVKKYVDMPITDVLQMMGRAGRPQFDNEGVAVVL 1341
Score = 67.4 bits (163), Expect = 1e-10
Identities = 57/206 (27%), Positives = 98/206 (46%), Gaps = 29/206 (14%)
Query: 326 YHLEQGDSVFVAAHTSAGKTVVAEYAIAMS----------KRNMTKTIYTSPIKALSNQK 375
YH +++ V A T AGKT VA +I + R+ K +Y +P+KAL+ +
Sbjct: 125 YH--SNENMLVCAPTGAGKTNVAMLSIVHTIRCHLEQGVINRDEFKIVYIAPMKALAAEM 182
Query: 376 FRDFKEDFDDVDVGL--ITGDVQINPE----ADCLIMTTEILRSMLYRGAD---LIRDVE 426
+F + + + + +TGD+Q+ L+ T E + +G+ LI VE
Sbjct: 183 VDNFSKRLKSLQIAVRELTGDIQLTKAEMAATQILVTTPEKWDVVTRKGSGDVALISLVE 242
Query: 427 FVIFDEVHYVNDQTRGVVWEEVIIML-------PQHVKFILLSATVPNTFEFANWVGRTK 479
+I DEVH ++ + RG V E ++ ++ + LSAT+PN + A+++
Sbjct: 243 LLIIDEVHLLHGE-RGPVVEALVARTLRLVESSQSMIRIVGLSATLPNYIDVAHFLRVNP 301
Query: 480 QKNIYVISTPKRPVPLEINIWAKKKV 505
K ++ + RPVPL+ N K V
Sbjct: 302 MKGLFYFDSRFRPVPLDTNFVGIKSV 327
Score = 65.9 bits (159), Expect = 3e-10
Identities = 65/252 (25%), Positives = 109/252 (42%), Gaps = 40/252 (15%)
Query: 606 EYADSIEAADLLTAKERSAIHIFIEKSISRLRKDDRELPQITKIRSLLSRGIAVHHGGLL 665
E A + L K+ SA H +SI R R ++ L S G+A+HH G+L
Sbjct: 373 ELAQQNNTSALFLPKD-SAAHGLATRSIQRSRNK--------QLVELFSCGLAMHHAGML 423
Query: 666 PIVKELIEILFAKGFVKLLFATETFAMGLNLPTRTVVFSEIQKHDGEKKRYLLPG--EFT 723
++++E F +G + +L T T A G+NLP V+ +D + ++ G +
Sbjct: 424 RADRQMVEKYFVEGHISVLVCTATLAWGVNLPAHAVIIRGTDIYDAKHGSFVDLGILDVL 483
Query: 724 QMAGRAGRRGKDKTGT-VIVMSYSR------------PIDEASF---------KDVSLGV 761
Q+ GRAGR DK+G I+ SY + PI E++F ++ LG
Sbjct: 484 QIFGRAGRPQFDKSGVGTIITSYDKLNHYLSLLTNQFPI-ESNFVNCLADNLNAEIGLGT 542
Query: 762 PTRLQSQFR-LTYNMILNLLRIEALRVEEMIKFSFSENSKE-TLKPEQEKEIKELQSKVD 819
T + L+Y + +RI + +SE K+ TL+ + I +D
Sbjct: 543 ITNVDEAIEWLSYTYLFVRMRIN----PHVYGIEYSELEKDPTLEARRRALIMSAAMSLD 598
Query: 820 SIDISEFSEETV 831
+ F++ T+
Sbjct: 599 KARMMRFNQRTM 610
>YER172c [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily
Length = 2163
Score = 82.0 bits (201), Expect = 4e-15
Identities = 133/572 (23%), Positives = 228/572 (39%), Gaps = 116/572 (20%)
Query: 208 EAGSNDDEKQFEEIDKLSNLNNSQENKKEVEKLRELEYQKMASTAVVDEALGSSEIDKLL 267
E S DD+ Q E + N + ++EK++ E K+ + V GS + K
Sbjct: 400 ELDSGDDQPQSSEAKRTKFSNPAIPPVIDLEKIKFDESSKLMTVTKVSLPEGSFKRVKPQ 459
Query: 268 PVDLNFARHIRTFNNTAEKVEWAHMVDLNSNMDNFNELVPNPARTWPFELDTFQKEAVYH 327
++ HI + E + ++ S D E P+ T L+ Q + +
Sbjct: 460 YDEI----HIPAPSKPVIDYE---LKEITSLPDWCQEAFPSSETT---SLNPIQSKVFHA 509
Query: 328 LEQGDS-VFVAAHTSAGKTVVA----------EYAIAMSKRNMT--KTIYTSPIKALSNQ 374
+GDS + + A T +GKT +A Y K N++ K +Y +P+KAL +
Sbjct: 510 AFEGDSNMLICAPTGSGKTNIALLTVLKALSHHYNPKTKKLNLSAFKIVYIAPLKALVQE 569
Query: 375 KFRDFKE--DFDDVDVGLITGDVQIN----PEADCLIMTTE--ILRSMLYRGADLIRDVE 426
+ R+F+ F + V +TGD +++ E L+ T E + + ++ V
Sbjct: 570 QVREFQRRLAFLGIKVAELTGDSRLSRKQIDETQVLVSTPEKWDITTRNSNNLAIVELVR 629
Query: 427 FVIFDEVHYVNDQTRGVVWEEVIIML-------PQHVKFILLSATVPNTFEFANWVGRTK 479
+I DE+H ++D RG V E ++ ++ + I LSAT+PN + ++ R
Sbjct: 630 LLIIDEIHLLHDD-RGPVLESIVARTFWASKYGQEYPRIIGLSATLPNYEDVGRFL-RVP 687
Query: 480 QKNIYVISTPKRPVPLEINIWAKKKVIPVINDKREFLPQNFREHKELLTAXXXXXXXXXX 539
++ ++ + RP PL K+ N ++ N ++++L
Sbjct: 688 KEGLFYFDSSFRPCPLSQQFCGIKE----RNSLKKLKAMNDACYEKVL------------ 731
Query: 540 XXXXXXXXQKTITKGSKGVGAKGSNMSTFYKYDGASKTTWYDLLKNLRANDLLPAVVFVF 599
++I +G++ + S T + TW LKN A + +
Sbjct: 732 ---------ESINEGNQIIVFVHSRKET------SRTATW---LKNKFAEENI------- 766
Query: 600 SKKRCEEYADS-----IEAADLLTAKERSAIHIFIEKSISRLRKDDRELPQITKIRSLLS 654
+ K + A S EAA++L R I I + L + DR L
Sbjct: 767 THKLTKNDAGSKQILKTEAANVLDPSLRKLIESGIGTHHAGLTRSDRSLS---------- 816
Query: 655 RGIAVHHGGLLPIVKELIEILFAKGFVKLLFATETFAMGLNLPTRTVVFSEIQKHDGEKK 714
E LFA G +++L T T A G+NLP TV+ + EK
Sbjct: 817 ------------------EDLFADGLLQVLVCTATLAWGVNLPAHTVIIKGTDVYSPEKG 858
Query: 715 RY--LLPGEFTQMAGRAGRRGKDKTGTVIVMS 744
+ L P + QM GRAGR D G I+++
Sbjct: 859 SWEQLSPQDVLQMLGRAGRPRYDTFGEGIIIT 890
Score = 78.2 bits (191), Expect = 6e-14
Identities = 70/263 (26%), Positives = 118/263 (44%), Gaps = 36/263 (13%)
Query: 267 LPVDLNFARHIRTFNNTAEKVEWAHMVDLNSNMDNFNELVPNPARTWPFELDTFQK---- 322
+PV N + + F +E + D+F+E+ FE TF K
Sbjct: 1304 IPVSFNGFKLPKKFPPPTPLLENISISTSELGNDDFSEV---------FEFKTFNKIQSQ 1354
Query: 323 --EAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMS-KRNMTKTIYTSPIKALSNQKFRDF 379
E++Y+ DSVFV + GKT +AE A+ ++N + +Y +P + D+
Sbjct: 1355 VFESLYN--SNDSVFVGSGKGTGKTAMAELALLNHWRQNKGRAVYINPSGEKIDFLLSDW 1412
Query: 380 KEDFDDVDVGLITGDVQINPEADC-------LIMTTEI---LRSMLYRGADLIRDVEFVI 429
+ F + G I + +P + +++ T + L S +R I+ +E +I
Sbjct: 1413 NKRFSHLAGGKIINKLGNDPSLNLKLLAKSHVLLATPVQFELLSRRWRQRKNIQSLELMI 1472
Query: 430 FDEVHYVNDQTRGVVWEEVI-------IMLPQHVKFILLSATVPNTFEFANWVGRTKQKN 482
+D+ H ++ G V+E +I L + ++F+ LS + N +F W G TK N
Sbjct: 1473 YDDAHEISQGVYGAVYETLISRMIFIATQLEKKIRFVCLSNCLANARDFGEWAGMTK-SN 1531
Query: 483 IYVISTPKRPVPLEINIWAKKKV 505
IY S +R PLEINI + K V
Sbjct: 1532 IYNFSPSERIEPLEINIQSFKDV 1554
>CE29195 [R] KOG0949 Predicted helicase DEAD-box superfamily
Length = 1714
Score = 81.6 bits (200), Expect = 5e-15
Identities = 56/174 (32%), Positives = 87/174 (49%), Gaps = 12/174 (6%)
Query: 631 KSISRLRKDDRELPQITKIRSLLSRGIAVHHGGLLPIVKELIEILFAKGFVKLLFATETF 690
K + R++K + + L RGI HH GL + + +E+LF G + +LF+T T
Sbjct: 1256 KMVERMQKGAKTRESTQVLLKLFERGIGYHHAGLNTVERGAVEVLFRSGNLAVLFSTSTL 1315
Query: 691 AMGLNLPTRTVVFSEIQKHDGEKKRYLLPGEFTQMAGRAGRRGKDKTGTVIVMSYS---- 746
++G+N+P +TV+F G L P + QM+GRAGRRG D +G VI MS
Sbjct: 1316 SLGVNMPCKTVMF-------GVDTLQLTPLLYRQMSGRAGRRGFDHSGNVIFMSIPTSKV 1368
Query: 747 RPIDEASFKDVSLGVPTRLQSQFRL-TYNMILNLLRIEALRVEEMIKFSFSENS 799
R + AS ++ P + RL Y ++L E +V M + +F+ S
Sbjct: 1369 RRLLTASLSNLQGNPPFTVLFLLRLFAYVHQQDILNEEGQKVSTMKQRAFAAKS 1422
Score = 72.4 bits (176), Expect = 3e-12
Identities = 53/205 (25%), Positives = 101/205 (48%), Gaps = 22/205 (10%)
Query: 315 FELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMSKRNMTK--TIYTSPIKALS 372
F D +Q++ + +++G+S + A TSAGKT V+ Y I R+ +Y +P KAL
Sbjct: 783 FAPDGWQRKMLDSVDRGNSALIIAPTSAGKTFVSYYCIEKVLRSSDNDVVVYVAPSKALI 842
Query: 373 NQ-------KFRDFKEDFDDVDVGLITGDVQINP-EADCLIMTTEILRSMLYRGADLIR- 423
NQ +FR+ G +T + N + LI E L+ ++ ++
Sbjct: 843 NQVCGSVYARFRNKSMKRGISLFGTLTQEYSQNAMQCQVLITVPECLQELMLSRTPAVQK 902
Query: 424 ---DVEFVIFDEVHYVNDQTRGVVWEEVIIMLPQHVKFILLSATVPNTFEFANWVGRTKQ 480
+++V+FDEVH + +WE++++++ F+ LSAT+ N + W+ ++Q
Sbjct: 903 FVSHIKYVVFDEVHSIGASEESHIWEQLLLLI--QCPFLALSATIGNANKLHEWLNSSEQ 960
Query: 481 ------KNIYVISTPKRPVPLEINI 499
+ + +I+ +R LE++I
Sbjct: 961 AKSAGKRKVELINYGERYSELELSI 985
>SPAC694.02 [R] KOG0949 Predicted helicase DEAD-box superfamily
Length = 1717
Score = 80.9 bits (198), Expect = 9e-15
Identities = 58/186 (31%), Positives = 95/186 (50%), Gaps = 16/186 (8%)
Query: 315 FELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMSKRNMTK--TIYTSPIKALS 372
F+ D +Q+E + L++ +SVFV A TS+GKT ++ YA+ R+ IY +P KAL
Sbjct: 734 FDPDEWQRETLDILDRDESVFVVAPTSSGKTFISFYAMEKVLRDNDDGVVIYVAPTKALV 793
Query: 373 NQ-------KFRDFKEDFDDVDVGLITGDVQINPEADCLIMTT--EILRSMLYRGA---D 420
NQ +F + T D +IN +C ++ T +L+SML + A
Sbjct: 794 NQLSAEVYARFNKHYPHAGQTVWSVYTRDYRINNPTNCQVLITVPHVLQSMLLQPALANA 853
Query: 421 LIRDVEFVIFDEVHYVNDQTRGVVWEEVIIMLPQHVKFILLSATVPNTFEFANWVGRTKQ 480
+ +IFDE+H + G+V E+++++ P + LSATV N EF W+ ++
Sbjct: 854 WCPKIRRIIFDEIHCIGQMEDGLVEEQLLLLAP--CPIVALSATVGNPQEFQVWLSALQR 911
Query: 481 KNIYVI 486
+ Y I
Sbjct: 912 AHSYPI 917
Score = 66.6 bits (161), Expect = 2e-10
Identities = 50/138 (36%), Positives = 70/138 (50%), Gaps = 27/138 (19%)
Query: 653 LSRGIAVHHGGLLPIVKELIEILFAKGFVKLLFATETFAMGLNLPTRTVVFSEIQKHDGE 712
L RGI +HH GL ++++E+LF G + ++ AT T ++G+N+P RTVVF G+
Sbjct: 1221 LYRGIGIHHSGLNRRYRQIVEVLFRCGQLTVVIATRTLSLGINMPCRTVVFL------GD 1274
Query: 713 KKRYLLPGEFTQMAGRAGRRGKDKTGTVIVMSYSRPIDEASFKDVSLGVPTRL------- 765
+ L F Q AGRAGRRG D G V F V L RL
Sbjct: 1275 SLQ-LNALNFHQAAGRAGRRGFDLLGHV------------GFLGVPLHKIYRLLTTKLWD 1321
Query: 766 -QSQFRLTYNMILNLLRI 782
Q QF LT +++L L ++
Sbjct: 1322 IQGQFPLTTSLVLQLSQL 1339
>At1g20960 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily
Length = 2171
Score = 79.7 bits (195), Expect = 2e-14
Identities = 121/500 (24%), Positives = 193/500 (38%), Gaps = 113/500 (22%)
Query: 287 VEW-AHMVDLNSNMDNFNELVP--NPARTWPFELDTFQKEAVYH--LEQGDSVFVAAHTS 341
V W + VD N + E+ PA +L+ Q + VY L + +++ + A T
Sbjct: 472 VPWVSKKVDRNEKLVKITEMPDWAQPAFKGMQQLNRVQSK-VYDTALFKAENILLCAPTG 530
Query: 342 AGKTVVAEYAIAMS---KRNMT--------KTIYTSPIKALSNQKFRDFKEDFDD--VDV 388
AGKT VA I RN K +Y +P+KAL + + D V V
Sbjct: 531 AGKTNVAMLTILQQLEMNRNTDGTYNHGDYKIVYVAPMKALVAEVVGNLSNRLKDYGVIV 590
Query: 389 GLITGDVQIN----PEADCLIMTTEILRSMLYRGAD--LIRDVEFVIFDEVHYVNDQTRG 442
++GD + E ++ T E + + D + V +I DE+H ++D RG
Sbjct: 591 RELSGDQSLTGREIEETQIIVTTPEKWDIITRKSGDRTYTQLVRLLIIDEIHLLHDN-RG 649
Query: 443 VVWEEVIIML-------PQHVKFILLSATVPNTFEFANWVGRTKQKNIYVISTPKRPVPL 495
V E ++ ++++ + LSAT+PN + A ++ +K ++ RPVPL
Sbjct: 650 PVLESIVARTLRQIETTKENIRLVGLSATLPNYEDVALFLRVDLKKGLFKFDRSYRPVPL 709
Query: 496 E---INIWAKKKVIPVINDKREFLPQNFREHKELLTAXXXXXXXXXXXXXXXXXXQKTIT 552
I I KK + +R L + K L A + I
Sbjct: 710 HQQYIGISVKKPL------QRFQLMNDLCYQKVLAGAGKHQVLIFVHSRKETSKTARAI- 762
Query: 553 KGSKGVGAKGSNMSTFYKYDGASKTTWY---DLLKNLRANDLLPAVVFVFSKKRCEEYAD 609
+ +S F K D ++ + D++KN D+LP Y
Sbjct: 763 ---RDTAMANDTLSRFLKEDSVTRDVLHSHEDIVKNSDLKDILP-------------YGF 806
Query: 610 SIEAADLLTAKERSAIHIFIEKSISRLRKDDRELPQITKIRSLLSRGIAVHHGGLLPIVK 669
+I A L + DRE
Sbjct: 807 AIHHAG--------------------LSRGDRE--------------------------- 819
Query: 670 ELIEILFAKGFVKLLFATETFAMGLNLPTRTVVFSEIQKHDGEKKRY--LLPGEFTQMAG 727
++E LF++G V++L +T T A G+NLP TV+ Q ++ EK + L P + QM G
Sbjct: 820 -IVETLFSQGHVQVLVSTATLAWGVNLPAHTVIIKGTQVYNPEKGAWMELSPLDVMQMLG 878
Query: 728 RAGRRGKDKTGT-VIVMSYS 746
RAGR D+ G +I+ YS
Sbjct: 879 RAGRPQYDQHGEGIIITGYS 898
Score = 63.9 bits (154), Expect = 1e-09
Identities = 49/188 (26%), Positives = 92/188 (48%), Gaps = 22/188 (11%)
Query: 332 DSVFVAAHTSAGKTVVAEYAIAMSKRN----MTKTIYTSPIKALSNQKFRDFKEDFD--- 384
D+V VAA T +GKT+ AE+AI + + +Y +P++A++ ++FR ++ F
Sbjct: 1367 DNVLVAAPTGSGKTICAEFAILRNHHEGPDATMRVVYIAPLEAIAKEQFRIWEGKFGKGL 1426
Query: 385 DVDVGLITG----DVQINPEADCLIMTTE--ILRSMLYRGADLIRDVEFVIFDEVHYVND 438
+ V +TG D+++ + +I T E S ++ ++ V I DE+H +
Sbjct: 1427 GLRVVELTGETALDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIVDELHLIGG 1486
Query: 439 QTRGVVWEEVIIMLP-------QHVKFILLSATVPNTFEFANWVGRTKQKNIYVISTPKR 491
Q G V E ++ + ++ + LS ++ N + W+G + ++ R
Sbjct: 1487 Q-HGPVLEVIVSRMRYISSQVINKIRIVALSTSLANAKDLGEWIGASSH-GLFNFPPGVR 1544
Query: 492 PVPLEINI 499
PVPLEI+I
Sbjct: 1545 PVPLEIHI 1552
>At2g42270 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily
Length = 2172
Score = 78.2 bits (191), Expect = 6e-14
Identities = 131/572 (22%), Positives = 218/572 (37%), Gaps = 118/572 (20%)
Query: 213 DDEKQFEEIDKLSNLNNSQENKKEVEKLRELEYQKMASTAVVDEALGSSEIDKLLPVDLN 272
D ++ ++D L N + +++V L L + + T E +K D +
Sbjct: 410 DGDRGMRDVDDLDLENGWLKGQRQVMDLESLAFNQGGFTR---------ENNKCELPDRS 460
Query: 273 FARHIRTFNNTAEKVEW-AHMVDLNSNMDNFNELVP--NPARTWPFELDTFQKEAVYH-- 327
F + F+ V W + D N + ++L PA +L+ Q + VY
Sbjct: 461 FRIRGKEFDEV--HVPWVSKKFDSNEKLVKISDLPEWAQPAFRGMQQLNRVQSK-VYGTA 517
Query: 328 LEQGDSVFVAAHTSAGKTVVAEYAIAMSKR-NMT----------KTIYTSPIKALSNQKF 376
L + D++ + A T AGKT VA I NM K +Y +P+KAL +
Sbjct: 518 LFKADNILLCAPTGAGKTNVAVLTILHQLGLNMNPGGTFNHGNYKIVYVAPMKALVAEVV 577
Query: 377 RDFKEDFDD--VDVGLITGDVQIN----PEADCLIMTTEILRSMLYRGAD--LIRDVEFV 428
+ D V V ++GD + E ++ T E + + D + V +
Sbjct: 578 DSLSQRLKDFGVTVKELSGDQSLTGQEIKETQIIVTTPEKWDIITRKSGDRTYTQLVRLL 637
Query: 429 IFDEVHYVNDQTRGVVWEEVIIML-------PQHVKFILLSATVPNTFEFANWVGRTKQK 481
I DE+H ++D RG V E ++ +H++ + LSAT+PN + A+++ +
Sbjct: 638 IIDEIHLLDDN-RGPVLESIVARTLRQIESTKEHIRLVGLSATLPNCDDVASFLRVDLKN 696
Query: 482 NIYVISTPKRPVPL---EINIWAKKKVIPVINDKREFLPQNFREHKELLTAXXXXXXXXX 538
+++ RPVPL I I KK + +R L + K + A
Sbjct: 697 GLFIFDRSYRPVPLGQQYIGINVKKPL------RRFQLMNDICYQKVVAVAGKHQVLIFV 750
Query: 539 XXXXXXXXXQKTITKGSKGVGAKGSNMSTFYKYDGASKTTWYDLLKNLRANDLLPAVVFV 598
+ I + +S F K D S+ L L+ NDL + +
Sbjct: 751 HSRKETAKTARAI----RDTAMANDTLSRFLKEDSQSREILKCLAGLLKNNDLKELLPYG 806
Query: 599 FSKKRCEEYADSIEAADLLTAKERSAIHIFIEKSISRLRKDDRELPQITKIRSLLSRGIA 658
F AIH + L + DRE
Sbjct: 807 F------------------------AIH------HAGLTRTDRE---------------- 820
Query: 659 VHHGGLLPIVKELIEILFAKGFVKLLFATETFAMGLNLPTRTVVFSEIQKHDGEKKRY-- 716
++E F G +++L +T T A G+NLP TV+ Q ++ E+ +
Sbjct: 821 ------------IVENQFRWGNLQVLISTATLAWGVNLPAHTVIIKGTQVYNPERGEWME 868
Query: 717 LLPGEFTQMAGRAGRRGKDKTGT-VIVMSYSR 747
L P + QM GRAGR D+ G +I+ YS+
Sbjct: 869 LSPLDVMQMIGRAGRPQYDQQGEGIIITGYSK 900
Score = 67.4 bits (163), Expect = 1e-10
Identities = 52/189 (27%), Positives = 95/189 (49%), Gaps = 24/189 (12%)
Query: 332 DSVFVAAHTSAGKTVVAEYAIAMS----KRNMTKTIYTSPIKALSNQKFRDFKEDFD--- 384
D+V VAA T +GKT+ AE+AI + + + +Y +P++A++ ++FRD+++ F
Sbjct: 1368 DNVVVAAPTGSGKTICAEFAILRNHLEGPDSAMRVVYIAPLEAIAKEQFRDWEKKFGKGL 1427
Query: 385 DVDVGLITG----DVQINPEADCLIMTTE--ILRSMLYRGADLIRDVEFVIFDEVHYVND 438
+ V +TG D+++ + +I T E S ++ I+ V I DE+H +
Sbjct: 1428 GLRVVELTGETLLDLKLLEKGQIIISTPEKWDALSRRWKQRKYIQQVSLFIVDELHLIGG 1487
Query: 439 QTRGVVWEEVII--------MLPQHVKFILLSATVPNTFEFANWVGRTKQKNIYVISTPK 490
Q V+ EVI+ + ++ + LS ++ N + W+G ++
Sbjct: 1488 QGGQVL--EVIVSRMRYISSQVGNKIRIVALSTSLANAKDLGEWIG-ASSCGVFNFPPNV 1544
Query: 491 RPVPLEINI 499
RPVPLEI+I
Sbjct: 1545 RPVPLEIHI 1553
>CE21971 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily
Length = 2145
Score = 77.4 bits (189), Expect = 1e-13
Identities = 50/154 (32%), Positives = 84/154 (54%), Gaps = 8/154 (5%)
Query: 595 VVFVFSKKRCEEYADSIEAADLLTAKERSAIHIFIEK--SISRLRKDDRELPQITKIRSL 652
+VFV S+K + A +I A L E+ + F+ + + + + + + E + ++ L
Sbjct: 715 LVFVHSRKETAKTAKAIRDACL----EKDTLSAFMREGSASTEILRTEAEQAKNLDLKDL 770
Query: 653 LSRGIAVHHGGLLPIVKELIEILFAKGFVKLLFATETFAMGLNLPTRTVVFSEIQKHDGE 712
L G A+HH G+ + + L+E LFA +++LF+T T A G+NLP TV+ Q ++ E
Sbjct: 771 LPYGFAIHHAGMNRVDRTLVEDLFADRHIQVLFSTATLAWGVNLPAHTVIIKGTQIYNPE 830
Query: 713 KKRYLLPG--EFTQMAGRAGRRGKDKTGTVIVMS 744
K R+ G + QM GRAGR D G I+++
Sbjct: 831 KGRWTELGALDIMQMLGRAGRPQYDDRGEGILIT 864
Score = 55.5 bits (132), Expect = 4e-07
Identities = 45/189 (23%), Positives = 89/189 (46%), Gaps = 20/189 (10%)
Query: 329 EQGDSVFVAAHTSAGKTVVAEYAIAMSKRNM--TKTIYTSPIKALSNQKFRDFKEDFDDV 386
E ++V V A +GKT +AE A+ N K +Y +P++ ++ + + D+K +
Sbjct: 1335 ESNENVIVCAPNGSGKTAIAELAVLRHFENTPEAKAVYITPMEDMATKVYADWKRRLEPA 1394
Query: 387 ---DVGLITG----DVQINPEADCLIMTTEILR--SMLYRGADLIRDVEFVIFDEVHYVN 437
+ L+TG D+++ +I T E S ++ +++V+ I D++H +
Sbjct: 1395 IGHTIVLLTGEQTMDLKLAQRGQLIISTPERWDNISRRWKQRKSVQNVKLFIADDLHMIG 1454
Query: 438 DQTRGVVWEEVI-------IMLPQHVKFILLSATVPNTFEFANWVGRTKQKNIYVISTPK 490
+ G V+E V L V+ + LS+++ N + W+G + + +
Sbjct: 1455 -ASNGAVFEVVCSRTRYISSQLESAVRVVALSSSLTNARDLGMWLGCSASATFNFMPS-T 1512
Query: 491 RPVPLEINI 499
RPVPL++ I
Sbjct: 1513 RPVPLDLEI 1521
>Hs22042312 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily
Length = 2136
Score = 74.7 bits (182), Expect = 7e-13
Identities = 47/152 (30%), Positives = 81/152 (52%), Gaps = 4/152 (2%)
Query: 595 VVFVFSKKRCEEYADSIEAADLLTAKERSAIHIFIEKSISRLRKDDRELPQITKIRSLLS 654
+VFV S+K + A +I D+ K+ + + + + + + + E + +++ LL
Sbjct: 722 LVFVHSRKETGKTARAIR--DMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLP 779
Query: 655 RGIAVHHGGLLPIVKELIEILFAKGFVKLLFATETFAMGLNLPTRTVVFSEIQKHDGEKK 714
G A+HH G+ + + L+E LFA +++L +T T A G+NLP TV+ Q + EK
Sbjct: 780 YGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKG 839
Query: 715 RYLLPG--EFTQMAGRAGRRGKDKTGTVIVMS 744
R+ G + QM GRAGR D G I+++
Sbjct: 840 RWTELGALDILQMLGRAGRPQYDTKGEGILIT 871
Score = 70.9 bits (172), Expect = 1e-11
Identities = 58/211 (27%), Positives = 109/211 (51%), Gaps = 31/211 (14%)
Query: 308 NPARTWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAI--AMSKRNMTKTIYT 365
NP +T F VY+ + D+VFV A T +GKT+ AE+AI + + + + +Y
Sbjct: 1329 NPIQTQVFN-------TVYNSD--DNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYI 1379
Query: 366 SPIKALSNQKFRDFKEDFDD---VDVGLITG----DVQINPEADCLIMTTE--ILRSMLY 416
+P++AL+ Q + D+ E F D V L+TG D+++ + + +I T E + S +
Sbjct: 1380 TPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRW 1439
Query: 417 RGADLIRDVEFVIFDEVHYVNDQTRGVVWEEVII--------MLPQHVKFILLSATVPNT 468
+ ++++ + DEVH + + V+ EVI + + ++ + LS+++ N
Sbjct: 1440 KQRKNVQNINLFVVDEVHLIGGENGPVL--EVICSRMRYISSQIERPIRIVALSSSLSNA 1497
Query: 469 FEFANWVGRTKQKNIYVISTPKRPVPLEINI 499
+ A+W+G + + RPVPLE++I
Sbjct: 1498 KDVAHWLG-CSATSTFNFHPNVRPVPLELHI 1527
Score = 55.8 bits (133), Expect = 3e-07
Identities = 43/158 (27%), Positives = 78/158 (49%), Gaps = 17/158 (10%)
Query: 593 PAVVFVFSKKRCEEYADSIEAADLLTAKERSAIHIFIEKSISRLRKDDRELPQITKI--- 649
P +VFV S+K+ + A D+LT A I ++ + KD +P + K+
Sbjct: 1558 PVIVFVPSRKQTR-----LTAIDILTT---CAADIQRQRFLHCTEKD--LIPYLEKLSDS 1607
Query: 650 --RSLLSRGIAVHHGGLLPIVKELIEILFAKGFVKLLFATETFAMGLNLPTRTVVFSEIQ 707
+ L G+ H GL P+ + L+E LF+ G ++++ A+ + G+N+ V+ + Q
Sbjct: 1608 TLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQ 1667
Query: 708 KHDGEKKRYL-LP-GEFTQMAGRAGRRGKDKTGTVIVM 743
++G+ Y+ P + QM G A R +D G ++M
Sbjct: 1668 YYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIM 1705
>7299675 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfamily
Length = 2059
Score = 73.2 bits (178), Expect = 2e-12
Identities = 86/338 (25%), Positives = 145/338 (42%), Gaps = 75/338 (22%)
Query: 422 IRDVEFVIFDEVHYVNDQTRGVVWE----EVIIMLPQH---VKFILLSATVPNTFEFANW 474
+ + V+ DEVH ++D+ RG + E +++ M ++ ++ I +SAT+ N +W
Sbjct: 348 LETIGMVVVDEVHLISDKGRGYILELLLAKILYMSRRNGLQIQVITMSATLENVQLLQSW 407
Query: 475 VGRTKQKNIYVISTPKRPVPLEINIWAKKKVIPVINDKREFLPQNFREHKELLTAXXXXX 534
+ +Y+ T RPV L+ I KV VI D R L ++ + K LL
Sbjct: 408 L----DAELYI--TNYRPVALKEMI----KVGTVIYDHRLKLVRDVAKQKVLL------- 450
Query: 535 XXXXXXXXXXXXXQKTITKGSKGVGAKGSNMSTFYKYDGASKTTWYDLLKNLRANDLLPA 594
KG + + + +G S
Sbjct: 451 ------------------KGLENDSDDVALLCIETLLEGCS------------------V 474
Query: 595 VVFVFSKKRCEEYADSIEAADLLTAKERSAIHIFIE-----KSISRLRKDDRELPQITKI 649
+VF SK CE A + A + K + + + ++I+ +++ R++P T +
Sbjct: 475 IVFCPSKDWCENLAVQLATAIHVQIKSETVLGQRLRTNLNPRAIAEVKQQLRDIP--TGL 532
Query: 650 RSLLSRGI----AVHHGGLLPIVKELIEILFAKGFVKLLFATETFAMGLNLPTRTVVFSE 705
++S+ I A HH GL +++IE F G +K+L AT T + G+NLP R V+
Sbjct: 533 DGVMSKAITYACAFHHAGLTTEERDIIEASFKAGALKVLVATSTLSSGVNLPARRVLIRS 592
Query: 706 IQKHDGEKKRYLLPGEFTQMAGRAGRRGKDKTGTVIVM 743
G++ L + QM GRAGR GKD G I++
Sbjct: 593 -PLFGGKQMSSL---TYRQMIGRAGRMGKDTLGESILI 626
>YGL251c [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily
Length = 1187
Score = 72.8 bits (177), Expect = 3e-12
Identities = 96/444 (21%), Positives = 169/444 (37%), Gaps = 82/444 (18%)
Query: 316 ELDTFQKEAVYHL-EQGDSVFVAAHTSAGKTVVAEYAIAM------SKRNMTKTIYTSPI 368
E + Q EA + E ++ +++ T +GKTV+ E AI S N TK IY +P
Sbjct: 138 EFNKMQSEAFPSIYESNENCIISSPTGSGKTVLFELAILRLIKETNSDTNNTKIIYIAPT 197
Query: 369 KALSNQKFRDFKEDFDDVDVGLITGDVQI-----NPEADCLIMTTEILRSMLYRGADLIR 423
K+L + ++++ F ++ VG++T D + + +I T E + R +D R
Sbjct: 198 KSLCYEMYKNWFPSFVNLSVGMLTSDTSFLETEKAKKCNIIITTPEKWDLLTRRWSDYSR 257
Query: 424 DVEFVIFDEVHYVNDQTRGVVWEEVIIMLPQHVKFILLSATVPNTFEFANWVGRTKQKNI 483
E VK +L+ + + + ++
Sbjct: 258 LFEL----------------------------VKLVLVDEI--------HTIKEKRGASL 281
Query: 484 YVISTPKRPVPLEINIWAKKKVIPVINDKREFLPQNFREHKELLTAXXXXXXXXXXXXXX 543
VI T + I A +P I D +L N +L+
Sbjct: 282 EVILTRMNTMCQNIRFVALSATVPNIEDLALWLKTNNELPANILS-------------FD 328
Query: 544 XXXXQKTITKGSKGVGAKGSNMSTFYKYDGASKTTWYDLLKNLRANDLLPAVVFVFSKKR 603
Q +TK G N ++ D + ++++ + D P ++F
Sbjct: 329 ESYRQVQLTKFVYGYSF---NCKNDFQKDAIYNSKLIEIIE--KHADNRPVLIF------ 377
Query: 604 CEEYADSIEAADLLTAKERSAIHIFIEKSISRLRKDDRELPQITKIRSLLSRGIAVHHGG 663
C A +I A L HIF S+ +K P + + +GIA HH G
Sbjct: 378 CPTRASTISTAKFLLNN-----HIF-----SKSKKRCNHNPSDKILNECMQQGIAFHHAG 427
Query: 664 LLPIVKELIEILFAKGFVKLLFATETFAMGLNLPTRTVVFSEIQKHDGEKKRYLLPGEFT 723
+ + +E F G + +L +T T A+G+NLP V+ + + + + +
Sbjct: 428 ISLEDRTAVEKEFLAGSINILCSTSTLAVGVNLPAYLVIIKGTKSWNSSEIQEYSDLDVL 487
Query: 724 QMAGRAGRRGKDKTGTVIVMSYSR 747
QM GRAGR + G ++M+ S+
Sbjct: 488 QMIGRAGRPQFETHGCAVIMTDSK 511
>Hs14747366 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily
Length = 1866
Score = 72.8 bits (177), Expect = 3e-12
Identities = 60/212 (28%), Positives = 109/212 (51%), Gaps = 33/212 (15%)
Query: 308 NPARTWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAI--AMSKRNMTKTIYT 365
NP +T F +YH + +V + A T +GKTV AE AI +K +K +Y
Sbjct: 992 NPVQTQIFH-------TLYHTDC--NVLLGAPTGSGKTVAAELAIFRVFNKYPTSKAVYI 1042
Query: 366 SPIKALSNQKFRDFKEDFDD------VDV-GLITGDVQINPEADCLIMTTE----ILRSM 414
+P+KAL ++ D+K ++ +++ G +T D++ +AD ++ T E + RS
Sbjct: 1043 APLKALVRERMDDWKVRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRS- 1101
Query: 415 LYRGADLIRDVEFVIFDEVHYVNDQTRGVVWEEVII---MLPQH----VKFILLSATVPN 467
++ + ++ V +I DE+H + ++ RG V E ++ + H V+ + LS + N
Sbjct: 1102 -WQNRNYVQQVTILIIDEIHLLGEE-RGPVLEVIVSRTNFISSHTEKPVRIVGLSTALAN 1159
Query: 468 TFEFANWVGRTKQKNIYVISTPKRPVPLEINI 499
+ A+W+ KQ ++ RPVPLE++I
Sbjct: 1160 ARDLADWL-NIKQMGLFNFRPSVRPVPLEVHI 1190
Score = 70.9 bits (172), Expect = 1e-11
Identities = 60/229 (26%), Positives = 101/229 (43%), Gaps = 35/229 (15%)
Query: 626 HIFIEKSISRLRKDDRELPQITKIRSLLSRGIAVHHGGLLPIVKELIEILFAKGFVKLLF 685
++ EK + R R ++R L G ++HH G+L + L+E LF+ G +K+L
Sbjct: 420 YVLAEKQVQRSRNK--------QVRELFPDGFSIHHAGMLRQDRNLVENLFSNGHIKVLV 471
Query: 686 ATETFAMGLNLPTRTVVFSEIQKHDGEKKRYLLPG--EFTQMAGRAGRRGKDKTGTVIVM 743
T T A G+NLP V+ Q + ++ ++ G + Q+ GRAGR DK G I++
Sbjct: 472 CTATLAWGVNLPAHAVIIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIII 531
Query: 744 SYSRPIDEASFKDVSLGVPTRLQSQF--RLTYNMILNLLRIEALRVEEMIK--------- 792
+ D+ S L ++SQF L N+ + VEE +K
Sbjct: 532 TTH---DKLSHYLTLLTQRNPIESQFLESLADNLNAEIALGTVTNVEEAVKWISYTYLYV 588
Query: 793 --------FSFSENSKE---TLKPEQEKEIKELQSKVDSIDISEFSEET 830
+ S + + TL+ +E+ + E+ K+D + F E T
Sbjct: 589 RMRANPLAYGISHKAYQIDPTLRKHREQLVIEVGRKLDKAQMIRFEERT 637
Score = 68.2 bits (165), Expect = 6e-11
Identities = 49/159 (30%), Positives = 77/159 (47%), Gaps = 19/159 (11%)
Query: 593 PAVVFVFSKKRCEEYADSIEAADLLTAKERSAIHIFIEKSISRLRKDDRELPQI------ 646
P ++FV S+++ LTA E A E L D+RE+ I
Sbjct: 1221 PVLIFVSSRRQTR-----------LTALELIAFLATEEDPKQWLNMDEREMENIIATVRD 1269
Query: 647 TKIRSLLSRGIAVHHGGLLPIVKELIEILFAKGFVKLLFATETFAMGLNLPTRTVVFSEI 706
+ ++ L+ GI +HH GL ++ +E LF V++L AT T A G+N P V+
Sbjct: 1270 SNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGVNFPAHLVIIKGT 1329
Query: 707 QKHDGEKKRYL-LP-GEFTQMAGRAGRRGKDKTGTVIVM 743
+ +DG+ +RY+ P + QM GRAGR D G +++
Sbjct: 1330 EYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVIL 1368
Score = 53.5 bits (127), Expect = 2e-06
Identities = 47/190 (24%), Positives = 87/190 (45%), Gaps = 27/190 (14%)
Query: 332 DSVFVAAHTSAGKTVVAEYAI----------AMSKRNMTKTIYTSPIKALSNQKFRDFKE 381
+++ + A T AGKT +A + + K+N K +Y +P+KAL+ + F
Sbjct: 157 ENMLICAPTGAGKTNIAMLTVLHEIRQHFQQGVIKKNEFKIVYVAPMKALAAEMTDYFSR 216
Query: 382 DFDDVDVGL--ITGDVQINPE----ADCLIMTTE---ILRSMLYRGADLIRDVEFVIFDE 432
+ + + + +TGD+Q++ L+ T E ++ L + V +I DE
Sbjct: 217 RLEPLGIIVKELTGDMQLSKSEILRTQMLVTTPEKWDVVTRKSVGDVALSQIVRLLILDE 276
Query: 433 VHYVNDQTRGVVWEEVIIMLPQHV-------KFILLSATVPNTFEFANWVGRTKQKNIYV 485
VH +++ RG V E ++ + V + + LSAT+PN + A ++ ++
Sbjct: 277 VHLLHED-RGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHVNPYIGLFF 335
Query: 486 ISTPKRPVPL 495
RPVPL
Sbjct: 336 FDGRFRPVPL 345
>CE27019 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfamily
Length = 923
Score = 72.8 bits (177), Expect = 3e-12
Identities = 67/234 (28%), Positives = 109/234 (45%), Gaps = 22/234 (9%)
Query: 594 AVVFVFSKKRCEEYADSIEA---ADLLTAKERSAIHIFIEKSISRLRKDDRELPQITKIR 650
AV+F +KK CE A I A + AK R+ F++ +S DD + + K +
Sbjct: 406 AVIFCPNKKNCENVAVLIAKTLPAHIRQAK-RAESDAFLQSYLSD--NDDERMDAVLK-Q 461
Query: 651 SLLSRGIAVHHGGLLPIVKELIEILFAKGFVKLLFATETFAMGLNLPTRTVVFSEIQKHD 710
+LS G+A HH GL ++ +E F +G + ++ AT T A G+NLP R V+ K
Sbjct: 462 CILS-GVAYHHSGLTQDERKCVEAAFMEGLIYVVCATSTLAAGVNLPVRRVII----KAP 516
Query: 711 GEKKRYLLPGEFTQMAGRAGRRGKDKTGTVIVMSYSRPIDEASFKDVSLGVPTRLQSQFR 770
+ L ++ QMAGRAGR G D G I + + +E F+++ R S
Sbjct: 517 MVGRERLGKAQYLQMAGRAGRAGFDTKGDCITIIKAGE-EERWFREMLKSDIPRCMSSLS 575
Query: 771 LTYNMILNLLRIEALRVEEMIK---------FSFSENSKETLKPEQEKEIKELQ 815
+M +L L++ E I+ +++ S E ++ E +K L+
Sbjct: 576 SEESMGSFILDCVVLKLAENIEEIMTAVRYSLFYAQESPENIRKLVESSVKRLE 629
>YGR271w [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily
Length = 1967
Score = 72.0 bits (175), Expect = 4e-12
Identities = 78/307 (25%), Positives = 137/307 (44%), Gaps = 33/307 (10%)
Query: 219 EEIDKLSNLNNSQE--NKKEVEKLRELEYQKMASTAVVDEALGSSEIDKLLPVD----LN 272
EE DK L+ + N++++ E+++ S + + + D + + ++
Sbjct: 1040 EESDKSQILHFEKFILNRRQLNNQHEMDFMIPLSDPLPPQVVVKVVSDTWIGCESTHAIS 1099
Query: 273 FARHIRTFNNTAEKVEWAHMVDLNSNMDNFNELVPNPARTWPFE-LDTFQKEAVYHL-EQ 330
F IR FN T + S + N P +PF+ + Q Y L
Sbjct: 1100 FQHLIRPFNETLQTKLLKLRPLPTSALQN-----PLIESIYPFKYFNPMQTMTFYTLYNT 1154
Query: 331 GDSVFVAAHTSAGKTVVAEYAI--AMSKRNMTKTIYTSPIKALSNQKFRDFKEDFDDV-- 386
++ FV + T +GKT+VAE AI A K +Y +P+KAL ++ D+++ V
Sbjct: 1155 NENAFVGSPTGSGKTIVAELAIWHAFKTFPGKKIVYIAPMKALVRERVDDWRKKITPVTG 1214
Query: 387 -DVGLITGDVQINP----EADCLIMTTEILR--SMLYRGADLIRDVEFVIFDEVHYVNDQ 439
V +TGD +P +A +I T E S ++ ++DV +I DE+H +
Sbjct: 1215 DKVVELTGDSLPDPKDVHDATIVITTPEKFDGISRNWQTRKFVQDVSLIIMDEIHLLASD 1274
Query: 440 TRGVVWEEVIIML-------PQHVKFILLSATVPNTFEFANWVGRTKQKNIYVISTPKRP 492
RG + E ++ + Q V+ + +S V N ++ A W+G K +Y + RP
Sbjct: 1275 -RGPILEMIVSRMNYISSQTKQPVRLLGMSTAVSNAYDMAGWLG-VKDHGLYNFPSSVRP 1332
Query: 493 VPLEINI 499
VPL++ I
Sbjct: 1333 VPLKMYI 1339
Score = 65.5 bits (158), Expect = 4e-10
Identities = 58/182 (31%), Positives = 89/182 (48%), Gaps = 27/182 (14%)
Query: 593 PAVVFVFSKKRCEEYADSIEAADLLTAKERSAIHIFIEKSISR--LRKDDRE-----LPQ 645
PA++FV S+++ + A DL IH+ + R L DD E L Q
Sbjct: 1371 PALIFVASRRQTR-----LTALDL--------IHLCGMEDNPRRFLNIDDEEELQYYLSQ 1417
Query: 646 ITK--IRSLLSRGIAVHHGGLLPIVKELIEILFAKGFVKLLFATETFAMGLNLPTRTVVF 703
+T ++ L GI +HH GL+ + + LF K +++L AT T A G+NLP V+
Sbjct: 1418 VTDDTLKLSLQFGIGLHHAGLVQKDRSISHQLFQKNKIQILIATSTLAWGVNLPAHLVII 1477
Query: 704 SEIQKHDGEKKRY--LLPGEFTQMAGRAGRRGKDKTGTVIVMSYSRPIDEASFKD-VSLG 760
Q D + + Y + + QM GRAGR D TGT IV Y++ + +K +++G
Sbjct: 1478 KGTQFFDAKIEGYRDMDLTDILQMMGRAGRPAYDTTGTAIV--YTKESKKMFYKHFLNVG 1535
Query: 761 VP 762
P
Sbjct: 1536 FP 1537
Score = 65.1 bits (157), Expect = 5e-10
Identities = 63/233 (27%), Positives = 112/233 (48%), Gaps = 40/233 (17%)
Query: 297 SNMDNFNELVPNPARTWPFELDTFQKEAVYHL--EQGDSVFVAAHTSAGKTVVAEYAIAM 354
S++D+F + V +P+E + VY + + +++ + A T AGKT +A I
Sbjct: 273 SDLDHFCKTV------FPYETLNQIQSLVYPVAYKTNENMLICAPTGAGKTDIALLTIIN 326
Query: 355 SKRNMT---------------KTIYTSPIKALSNQKFRDFKEDFD--DVDVGLITGDVQI 397
+ + + K IY +P+KAL+ + F + ++ V +TGD+Q+
Sbjct: 327 TIKQFSVVNGENEIDIQYDDFKVIYVAPLKALAAEIVDKFSKKLAPFNIQVRELTGDMQL 386
Query: 398 NPE---ADCLIMTTEILRSMLYRGA----DLIRDVEFVIFDEVHYVNDQTRGVVWEEVII 450
A +I+TT ++ R A DL+ V+ +I DEVH +++ RG V E ++
Sbjct: 387 TKAEILATQVIVTTPEKWDVVTRKANGDNDLVSKVKLLIIDEVHLLHED-RGPVIETLVA 445
Query: 451 MLPQHV-------KFILLSATVPNTFEFANWVGRTKQKNIYVISTPKRPVPLE 496
+ V + I LSAT+PN + A+++G +Q ++ RP PLE
Sbjct: 446 RTLRQVESSQSMIRIIGLSATLPNFMDVADFLGVNRQIGMFYFDQSFRPKPLE 498
Score = 56.2 bits (134), Expect = 2e-07
Identities = 47/166 (28%), Positives = 80/166 (47%), Gaps = 20/166 (12%)
Query: 595 VVFVFSKKRCEEYADSIEAADLLTAKERSAIHIF----IEK---SISRLRKDDRELPQIT 647
+VFV S+K + A + + A+ + +F IEK S S ++ D+++ +I
Sbjct: 536 MVFVHSRKETVKSARNF----IKLAESNHEVDLFAPDPIEKDKYSRSLVKNRDKDMKEIF 591
Query: 648 KIRSLLSRGIAVHHGGLLPIVKELIEILFAKGFVKLLFATETFAMGLNLPTRTVVFSEIQ 707
+ G +HH G+ + L E +F G +K+L T T A G+NLP V+ Q
Sbjct: 592 QF------GFGIHHAGMARSDRNLTEKMFKDGAIKVLCCTATLAWGVNLPADCVIIKGTQ 645
Query: 708 KHDGEKKRYLLPG--EFTQMAGRAGRRG-KDKTGTVIVMSYSRPID 750
+D +K ++ G + Q+ GR GR G GT I+ + + +D
Sbjct: 646 VYDSKKGGFIDLGISDVIQIFGRGGRPGFGSANGTGILCTSNDRLD 691
>At4g32700 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfamily
Length = 1548
Score = 68.6 bits (166), Expect = 5e-11
Identities = 45/152 (29%), Positives = 75/152 (48%), Gaps = 9/152 (5%)
Query: 595 VVFVFSKKRCEEYADSIEAADL---LTAKERSAIHIFIEKSISRLRKDDRELPQITKIRS 651
++F S+K CE A I + ++ + I +I LR+ + + +
Sbjct: 233 LIFCSSRKGCESTARHISKLIKNVPVNVDGENSEFMDIRSAIDALRRSPSGVDPV--LEE 290
Query: 652 LLSRGIAVHHGGLLPIVKELIEILFAKGFVKLLFATETFAMGLNLPTRTVVFSEIQKHDG 711
L G+A HH GL +E++E + KG V++L AT T A G+NLP R V+F +
Sbjct: 291 TLPSGVAYHHAGLTVEEREIVETCYRKGLVRVLTATSTLAAGVNLPARRVIF----RQPM 346
Query: 712 EKKRYLLPGEFTQMAGRAGRRGKDKTGTVIVM 743
+ ++ + QM+GRAGR G D G +++
Sbjct: 347 IGRDFIDGTRYKQMSGRAGRTGIDTKGDSVLI 378
>SPBC13G1.10c [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily
Length = 1935
Score = 67.8 bits (164), Expect = 8e-11
Identities = 58/195 (29%), Positives = 98/195 (49%), Gaps = 27/195 (13%)
Query: 325 VYHLEQGDSVFVAAHTSAGKTVVAEYAI--AMSKRNMTKTIYTSPIKALSNQKFRDFKED 382
+YH + ++FV A T +GKT+ AE A A+ +K +Y +P+KAL ++ +D+
Sbjct: 1146 IYHTDT--NIFVGAPTGSGKTMAAELATWRALHNYPKSKVVYIAPMKALVKERVKDWGHR 1203
Query: 383 F-DDVDVGLI--TG----DVQINPEADCLIMTTE----ILRSMLYRGADLIRDVEFVIFD 431
+ + + +I TG DV+ A+ +I T E I RS ++ ++DV +I D
Sbjct: 1204 LVEPMGISMIELTGDTNPDVKAVTNANIIITTPEKWDGITRS--WKSRKYVQDVSLIILD 1261
Query: 432 EVHYVNDQTRGVVWEEVIIML-------PQHVKFILLSATVPNTFEFANWVGRTKQKNIY 484
E+H + RG V E ++ + + V+ + LS V N + ANW+ + ++
Sbjct: 1262 EIHLLGSD-RGPVLEMIVSRMNYVASQTNKKVRVLGLSTAVANANDLANWL--NIRDGLF 1318
Query: 485 VISTPKRPVPLEINI 499
RPVPLEI I
Sbjct: 1319 NFRHSVRPVPLEIYI 1333
Score = 62.0 bits (149), Expect = 4e-09
Identities = 54/214 (25%), Positives = 95/214 (44%), Gaps = 36/214 (16%)
Query: 332 DSVFVAAHTSAGKTVVAEYAIAMSKRNMT-------------------KTIYTSPIKALS 372
+++ + A T AGKT VA A+ + N K +Y +P+KAL+
Sbjct: 294 ENMLICAPTGAGKTDVALLAMLQTISNYVESMNLMDESEPLDVHRDDFKIVYIAPMKALA 353
Query: 373 NQKFRDFKEDFDDVDVGL--ITGDVQINP----EADCLIMTTE---ILRSMLYRGADLIR 423
+ + + + +TGD+Q+ E L+ T E ++ L
Sbjct: 354 AEVVEKMGKRLAWLGLKTRELTGDMQLTKTEIAETQILVTTPEKWDVVTRKSVGDTQLAE 413
Query: 424 DVEFVIFDEVHYVNDQTRGVVWEEVIIMLP-------QHVKFILLSATVPNTFEFANWVG 476
V VI DEVH ++D+ RG V E ++ Q ++ + LSAT+PN + A+++G
Sbjct: 414 KVRLVIIDEVHMLHDE-RGAVIESLVARTQRLVETSQQMIRIVGLSATLPNYLDVADFLG 472
Query: 477 RTKQKNIYVISTPKRPVPLEINIWAKKKVIPVIN 510
+ K ++ S+ RP P+E + K ++N
Sbjct: 473 VNRYKGLFYFSSAFRPCPIEQHFIGAKGSPKIVN 506
Score = 57.8 bits (138), Expect = 8e-08
Identities = 46/154 (29%), Positives = 70/154 (44%), Gaps = 19/154 (12%)
Query: 593 PAVVFVFSKKRCEEYADSIEAADLLTAKERSAIHIFIEKSISRLRKDDRELPQITK---- 648
P ++FV S+++ LTAK+ A + L D+ EL I
Sbjct: 1364 PVLIFVSSRRQTR-----------LTAKDLIAFCGLEDNPRRFLYMDEEELEMIVSEVED 1412
Query: 649 --IRSLLSRGIAVHHGGLLPIVKELIEILFAKGFVKLLFATETFAMGLNLPTRTVVFSEI 706
++ L GIA+HH GL +++ E LF V++L AT T A G+N P V+
Sbjct: 1413 KSLKLALPFGIALHHAGLTENDRKISEELFVNNKVQILIATSTLAWGVNTPAHLVIVKGT 1472
Query: 707 QKHDGEKKRY--LLPGEFTQMAGRAGRRGKDKTG 738
+ +D + Y + + QM GRAGR D +G
Sbjct: 1473 EYYDAKIGGYKDMDLTDVLQMLGRAGRPQFDNSG 1506
Score = 54.3 bits (129), Expect = 9e-07
Identities = 48/183 (26%), Positives = 84/183 (45%), Gaps = 23/183 (12%)
Query: 558 VGAKGSNMSTFYKYDGASKTTWYDLLKNLRANDLLPAVVFVFSKKRCEEYADSIEA---- 613
+GAKGS D A + +LK ++ + ++FV S+K A +
Sbjct: 496 IGAKGSPKIVNSNIDEAC---FDKVLKLIQEGHQV--MIFVHSRKETINSAKKLREQFFH 550
Query: 614 ---ADLLTAKERSAIHIFIEKSISRLRKDDRELPQITKIRSLLSRGIAVHHGGLLPIVKE 670
ADLL + + ++ +S+ + + ++ L + +H+ G+L +
Sbjct: 551 EGEADLLDNSQHEKYSL-AQRDVSKSKNKE--------LKELFKYSMGIHNAGMLRSDRH 601
Query: 671 LIEILFAKGFVKLLFATETFAMGLNLPTRTVVFSEIQKHDGEKKRYLLPG--EFTQMAGR 728
L E LF+ G +K+L T T A G+NLP V+ Q +D +K ++ G + Q+ GR
Sbjct: 602 LTERLFSMGILKILCCTATLAWGVNLPAYAVLIKGTQLYDPQKGSFVDLGVLDVLQIFGR 661
Query: 729 AGR 731
AGR
Sbjct: 662 AGR 664
>At5g61140 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily
Length = 2137
Score = 67.8 bits (164), Expect = 8e-11
Identities = 48/160 (30%), Positives = 77/160 (48%), Gaps = 18/160 (11%)
Query: 594 AVVFVFSKKRCEEYADSI-------EAADLLTAKERSAIHIFIEKSISRLRKDDRELPQI 646
A++FV S+K + A+ + E DL T + + ++K + + R D
Sbjct: 748 AMIFVHSRKDTSKTAEKLVDLARQYETLDLFTNETHPQFQL-MKKDVMKSRNKD------ 800
Query: 647 TKIRSLLSRGIAVHHGGLLPIVKELIEILFAKGFVKLLFATETFAMGLNLPTRTVVFSEI 706
+ G +HH G+L + L E LF+ G +K+L T T A G+NLP TVV
Sbjct: 801 --LVKFFEAGFGIHHAGMLRSDRTLTERLFSDGLLKVLVCTATLAWGVNLPAHTVVIKGT 858
Query: 707 QKHDGEKKRYLLPG--EFTQMAGRAGRRGKDKTGTVIVMS 744
Q +D + + G + Q+ GRAGR DK+G I+++
Sbjct: 859 QLYDAKAGGWKDLGMLDVMQIFGRAGRPQFDKSGEGIIIT 898
Score = 61.2 bits (147), Expect = 8e-09
Identities = 51/198 (25%), Positives = 93/198 (46%), Gaps = 28/198 (14%)
Query: 323 EAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMS----------KRNMTKTIYTSPIKALS 372
+ VYH + ++ V A T AGKT +A ++ +N K +Y +P+KAL+
Sbjct: 517 QTVYHTNE--NILVCAPTGAGKTNIAMISVLHEIKQHFRDGYLHKNEFKIVYVAPMKALA 574
Query: 373 NQKFRDFKEDFDDVDVGL--ITGDVQINP----EADCLIMTTEILRSMLYRGADLIRD-- 424
+ F +++ + +TGD+Q+ E ++ T E + + +D+
Sbjct: 575 AEVTSAFSRRLAPLNMVVKELTGDMQLTKTELEETQMIVTTPEKWDVITRKSSDMSMSML 634
Query: 425 VEFVIFDEVHYVNDQTRGVVWEEVIIMLPQHV-------KFILLSATVPNTFEFANWVGR 477
V+ +I DEVH +ND RG V E ++ + V + + LSAT+P+ + A ++
Sbjct: 635 VKLLIIDEVHLLNDD-RGAVIEALVARTLRQVESTQTMIRIVGLSATLPSYLQVAQFLRV 693
Query: 478 TKQKNIYVISTPKRPVPL 495
++ + RPVPL
Sbjct: 694 NTDTGLFYFDSSYRPVPL 711
Score = 56.2 bits (134), Expect = 2e-07
Identities = 56/209 (26%), Positives = 99/209 (46%), Gaps = 30/209 (14%)
Query: 308 NPARTWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIA--MSKRNMTKTIYT 365
NP +T F + +YH + ++V V A T +GKT+ AE A+ S + K +Y
Sbjct: 1346 NPIQTQIFHV-------LYHTD--NNVLVGAPTGSGKTISAELAMLRLFSTQPDMKVVYI 1396
Query: 366 SPIKALSNQKFRDFKEDF------DDVDV-GLITGDVQINPEADCLIMTTEILR--SMLY 416
+P+KA+ ++ D+K+ + V++ G T D+ AD +I T E S +
Sbjct: 1397 APLKAIVRERMNDWKKHLVAPLGKEMVEMTGDYTPDLVALLSADIIISTPEKWDGISRNW 1456
Query: 417 RGADLIRDVEFVIFDEVHYVNDQTRGVVWE------EVIIMLPQHVKFILLSATVPNTFE 470
++ V VI DE+H + RG + E V ++L + L + + N +
Sbjct: 1457 HTRSYVKKVGLVILDEIHLLG-ADRGPILELYHDTCNVSMVLVK--SLYLFGSALANAGD 1513
Query: 471 FANWVGRTKQKNIYVISTPKRPVPLEINI 499
A+W+G + ++ RPVP+E++I
Sbjct: 1514 LADWLG-VGEIGLFNFKPSVRPVPIEVHI 1541
>Hs19525733 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfamily
Length = 1101
Score = 67.0 bits (162), Expect = 1e-10
Identities = 58/197 (29%), Positives = 90/197 (45%), Gaps = 22/197 (11%)
Query: 558 VGAKGSNMSTF-----YKYDGASKTTWYDLLKNLRANDLLP---AVVFVFSKKRCEEYAD 609
V +K N TF YKY K D L L +++P +VF SKK CE A+
Sbjct: 537 VDSKAENGMTFSRLLNYKYSDTLKKMDPDHLVAL-VTEVIPNYSCLVFCPSKKNCENVAE 595
Query: 610 SI---EAADLLTAKERSAIHIFIEKSISRLRKDDRELPQITKIRSLLSRGIAVHHGGLLP 666
I + + L KE+ + K++ + + ++ + G+A HH GL
Sbjct: 596 MICKFLSKEYLKHKEKEKCEVI--KNLKNIGNGNL----CPVLKRTIPFGVAYHHSGLTS 649
Query: 667 IVKELIEILFAKGFVKLLFATETFAMGLNLPTRTVVFSEIQKHDGEKKRYLLPGEFTQMA 726
++L+E ++ G + L T T A G+NLP R V+ + K +L ++ QM
Sbjct: 650 DERKLLEEAYSTGVLCLFTCTSTLAAGVNLPARRVIL----RAPYVAKEFLKRNQYKQMI 705
Query: 727 GRAGRRGKDKTGTVIVM 743
GRAGR G D G I++
Sbjct: 706 GRAGRAGIDTIGESILI 722
>ECU06g0920 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily
Length = 1481
Score = 66.2 bits (160), Expect = 2e-10
Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 24/165 (14%)
Query: 582 LLKNLRANDLLPAVVFVFSKKRCEEYADSIEAADLLTAKERSAIHIFIEKSISRLRKDDR 641
+L+NL +N P +VFV S+ E A+ I ++EK+ D
Sbjct: 452 VLENLDSNG--PVLVFVHSRNEALEVANEIRR--------------YMEKA------SDD 489
Query: 642 ELPQITKIRSLLSRGIAVHHGGLLPIVKELIEILFAKGFVKLLFATETFAMGLNLPTRTV 701
++R LL + +HH GL + +E L+ G + ++ +T T A G+NLP +TV
Sbjct: 490 GADVSPEVRELLKHRVGIHHAGLDRKTRVAVEDLYRNGKIDVMVSTATLAWGVNLPGKTV 549
Query: 702 VFSEIQKHDGEKKRY--LLPGEFTQMAGRAGRRGKDKTGTVIVMS 744
+ + +D R+ + E QM GRAGR G D +++ S
Sbjct: 550 IIKGTEVYDASTSRWRPIKQIEMIQMFGRAGRSGDDGCKGILISS 594
Score = 56.2 bits (134), Expect = 2e-07
Identities = 54/196 (27%), Positives = 95/196 (47%), Gaps = 17/196 (8%)
Query: 330 QGD-SVFVAAHTSAGKTVVAEYAI--AMSKRNMTKTIYTSPIKALSNQKFRDFKEDFDDV 386
+GD +V V A T +GKTV+ +I +R + Y P+KAL+ + R F
Sbjct: 260 KGDGNVLVCAPTGSGKTVIGMMSILREAERRKKMRVGYIVPMKALAREICRTISRWFSGY 319
Query: 387 DVGLI--TGDV---QINPEADCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQTR 441
+ ++ T DV + E +I++T +L R DL D+ V+ DE+H V D +R
Sbjct: 320 GISVVEHTSDVYSGYAHLERTGVIVSTPEKFDVLTRNTDLWFDL--VVIDEIHMVGD-SR 376
Query: 442 GVVWEEVIIMLPQH--VKFILLSATVPNTFEFANWVGRTKQKNIYVISTPKRPVPLE--- 496
G E V+ + + + LSAT+PN + ++G +I+ R P++
Sbjct: 377 GAAVEAVVARMAVRGGCRIVGLSATLPNYMDVGAFIG-CNDPDIFYFGPEFRKSPIDYEV 435
Query: 497 INIWAKKKVIPVINDK 512
IN+ A+++ + + +K
Sbjct: 436 INVGAREREMDMTIEK 451
>CE20305 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily
Length = 1798
Score = 65.9 bits (159), Expect = 3e-10
Identities = 55/190 (28%), Positives = 92/190 (47%), Gaps = 27/190 (14%)
Query: 333 SVFVAAHTSAGKTVVAEYAI--AMSKRNMTKTIYTSPIKALSNQKFRDFKEDFDD---VD 387
S + A T +GKT+ AE A+ + K +Y +P+K+L ++ D+K+ F+D
Sbjct: 978 SALIGAPTGSGKTLCAELAMFRLLQDHPGMKVVYIAPLKSLVRERVDDWKKKFEDGMGYR 1037
Query: 388 VGLITGDVQINPE---ADCLIMTTE-----ILRSMLYRGADLIRDVEFVIFDEVHYVNDQ 439
V ++GDV +PE A +++TT I RS R + +R V ++ DEVH +
Sbjct: 1038 VVEVSGDVTPDPEELAASSILITTPEKWDGISRSWATR--EYVRRVGLIVLDEVHLLG-V 1094
Query: 440 TRGVVWEEVIIML----------PQHVKFILLSATVPNTFEFANWVGRTKQKNIYVISTP 489
RG V E ++ L + V+ + LS + N + A W+G + Y
Sbjct: 1095 DRGAVLEAIVSRLKMITRRSHVTEEPVRLLGLSTALANAGDVAEWLG-IPDEACYNFRPS 1153
Query: 490 KRPVPLEINI 499
RPVP+ ++I
Sbjct: 1154 VRPVPISVHI 1163
Score = 65.1 bits (157), Expect = 5e-10
Identities = 48/140 (34%), Positives = 70/140 (49%), Gaps = 10/140 (7%)
Query: 615 DLLTAKER-SAIHIFIEKSISRLRKDDRELPQITKIRSLLSRGIAVHHGGLLPIVKELIE 673
DL K+R S+ +I +K+I+ R +I L RG+ +HH GL + L+E
Sbjct: 364 DLFLPKDRASSKYIQADKAINICRNR-------AQISPLFQRGMGIHHAGLCRQDRILME 416
Query: 674 ILFAKGFVKLLFATETFAMGLNLPTRTVVFSEIQKHDGEKKRYLLPG--EFTQMAGRAGR 731
FA+G V +LF T T A G+NLP VV D EK + G + Q+ GRAGR
Sbjct: 417 RCFAEGHVSVLFCTATLAWGVNLPAHAVVIKGTDVFDAEKGVFTDLGVLDVQQIFGRAGR 476
Query: 732 RGKDKTGTVIVMSYSRPIDE 751
+ G I+++ ID+
Sbjct: 477 PQFENEGHGIIITTRDKIDK 496
Score = 58.5 bits (140), Expect = 5e-08
Identities = 50/191 (26%), Positives = 89/191 (46%), Gaps = 28/191 (14%)
Query: 332 DSVFVAAHTSAGKTVVAEYAIAMS-----------KRNMTKTIYTSPIKALSNQKFRDFK 380
+++ + A T AGKT +A I + ++ K IY +P+KAL+ + F
Sbjct: 109 ENLLICAPTGAGKTNIAMLTILNTIHEHQNSRGDIMKDDFKIIYIAPMKALATEMTESFG 168
Query: 381 EDFDDVDVGL--ITGDVQIN----PEADCLIMTTE---ILRSMLYRGADLIRDVEFVIFD 431
+ + + + +TGD Q++ + L++T E ++ LI V +I D
Sbjct: 169 KRLAPLGLKVKELTGDTQLSRNEVADTQMLVLTPEKWDVITRKSTSDNSLINVVRLLIID 228
Query: 432 EVHYVNDQTRGVVWEEVII-------MLPQHVKFILLSATVPNTFEFANWVGRTKQKNIY 484
EVH ++D+ RG V E ++ M ++ + LSAT+PN + A ++ K ++
Sbjct: 229 EVHLLHDE-RGPVIETLVARTLRQVEMSQSGIRIVGLSATLPNFIDVARFLRVNPYKGLF 287
Query: 485 VISTPKRPVPL 495
RPVPL
Sbjct: 288 FFDGRFRPVPL 298
Score = 57.0 bits (136), Expect = 1e-07
Identities = 32/96 (33%), Positives = 52/96 (53%), Gaps = 2/96 (2%)
Query: 649 IRSLLSRGIAVHHGGLLPIVKELIEILFAKGFVKLLFATETFAMGLNLPTRTVVFSEIQK 708
++ L GI +HH GL + ++E LF + +++L AT T A G+N P V+ +
Sbjct: 1245 LKLTLPFGIGMHHAGLSAHERAIVEQLFIEKKIQVLIATATLAWGINCPAHLVIVKGTEY 1304
Query: 709 HDGEKKRYL-LP-GEFTQMAGRAGRRGKDKTGTVIV 742
DG+K +Y+ P + QM GRAGR D + ++
Sbjct: 1305 FDGKKGKYVDFPVTDVLQMMGRAGRPQFDDSAVAVI 1340
>Hs16418479 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfamily
Length = 2724
Score = 65.5 bits (158), Expect = 4e-10
Identities = 50/165 (30%), Positives = 79/165 (47%), Gaps = 18/165 (10%)
Query: 595 VVFVFSKKRCEEYADSI-----------EAADLLTAKERSAIHIFIEKSISRLRKDDREL 643
++F SKK CE+ AD I E L+ E + I +K + + R L
Sbjct: 474 LLFCPSKKWCEKLADIIAREFYNLHHQAEGEGLVKPSECPPV-ILEQKELLEVMDQLRRL 532
Query: 644 PQ--ITKIRSLLSRGIAVHHGGLLPIVKELIEILFAKGFVKLLFATETFAMGLNLPTRTV 701
P + ++ + G+A HH GL +++IE F +G +++L AT T + G+NLP R V
Sbjct: 533 PSGLDSVLQKTVPWGVAFHHAGLTFEERDIIEGAFRQGLIRVLAATSTLSSGVNLPARRV 592
Query: 702 VFSEIQKHDGEKKRYLLPGEFTQMAGRAGRRGKDKTGTVIVMSYS 746
+ G L + QM GRAGR+G D G++++ S
Sbjct: 593 II-RTPIFGGRPLDIL---TYKQMVGRAGRKGVDTVGSILICKNS 633
>7295156 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfamily
Length = 1051
Score = 65.1 bits (157), Expect = 5e-10
Identities = 122/546 (22%), Positives = 218/546 (39%), Gaps = 115/546 (21%)
Query: 328 LEQGDSVFVAAHTSAGKTVVAEYAIAMS----KRNMTKTIYTSPIKALSNQK---FRDFK 380
+ Q ++ A TS GKT+VAE + +RN+ ++ P ++ +K F
Sbjct: 277 IRQRKNLIYALPTSGGKTLVAEILMLRELLCRERNV---LFILPYVSIVQEKVSAMSPFA 333
Query: 381 EDFDDVDVGLITGDVQINPEADCLIMTTEILRSMLYRGADLI---------RDVEFVIFD 431
D D + G + P+ + + + +GA L+ ++ V+ D
Sbjct: 334 IDLDFIVEEYTAGKGKCPPQPRR--KRRSLFIASIEKGAVLMDSLIDVQRPHEIGLVVVD 391
Query: 432 EVHYVNDQTRGVVWEEV---IIMLPQHVKFILLSATVPNTFEFANWVGRTKQKNIYVIST 488
E+H + ++ RG E ++ L +++ + +SAT+ N E ++++ N V +
Sbjct: 392 ELHLIGEKGRGATLEAFLTKVMFLNANIQIVGMSATIGNLSEISSFL------NADVYTR 445
Query: 489 PKRPVPLEINIWAKKKVIPVINDKREFLPQNFREHKELLTAXXXXXXXXXXXXXXXXXXQ 548
RPV L+ I ++ IN + L + F +
Sbjct: 446 GFRPVELKEYIKCGPDLLE-INSAGQTLEEIFVPSR------------------------ 480
Query: 549 KTITKGSKGVGAKGSNMSTFYKYDGASKTTWYDLLKNLRANDLLP---AVVFVFSKKRCE 605
S Y Y A K D L L ++ P +VF S+K CE
Sbjct: 481 -----------------SVEYNYSEAVKRADPDHLAGL-ISECAPEHCCLVFCPSRKNCE 522
Query: 606 EYADSIEAADLLTAKERSAIHIFIEKSISRLRKDDRELPQITKIRS-LLSRGIAVHHGGL 664
A + + K + H EK + + D+ ++ + + L GIA HH GL
Sbjct: 523 NVALLLSR---IVPKHKFFEHRRSEK-LDLMDALDKMCGILSPVLAKTLPYGIAYHHSGL 578
Query: 665 LPIVKELIEILFAKGFVKLLFATETFAMGLNLPTRTVVFSEIQKHDGEKKRYLLPGEFTQ 724
++ IE + G V ++ T T A G+NLP + V+ + G++ +L ++ Q
Sbjct: 579 TTDERKYIETAYRFGVVTVICCTSTLAAGVNLPAKRVIIR--APYVGQE--FLTLCKYKQ 634
Query: 725 MAGRAGRRGKDKTGTVIVMSYSR-----------PIDEA----------SFKDVSLGVPT 763
M GRAGR G + G I+++ S+ P+D+A + + L V
Sbjct: 635 MVGRAGRAGLGEAGESILIAQSKDNLLVGQMLFSPMDKALSSLDQNEAVGLQSLILSVVG 694
Query: 764 RLQSQFRLTYNMILN--LLRIEA----LRVEEMIKFSFSENSKETLKPEQEKEIKELQSK 817
++ R N ++N LL ++A + V E++ E K + E + K SK
Sbjct: 695 LNLAECRRDLNRLVNSTLLSVQAKSLEVAVNEIVLRILREMFKNKVLQLAEPQAK---SK 751
Query: 818 VDSIDI 823
++S DI
Sbjct: 752 INSSDI 757
>At3g27730 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily
Length = 1113
Score = 63.9 bits (154), Expect = 1e-09
Identities = 53/181 (29%), Positives = 87/181 (47%), Gaps = 39/181 (21%)
Query: 333 SVFVAAHTSAGKTVVAEYAI------AMSK-------RNMTKTIYTSPIKALSNQKFRDF 379
++ ++A T +GKTV+ E I ++SK + KT+Y SP KAL +K RD+
Sbjct: 42 NMIISAPTGSGKTVLFELCILRLFSKSISKEGSFLHAKGALKTVYISPSKALVQEKLRDW 101
Query: 380 KEDFDDVDVGL--ITGDVQIN-----PEADCLIMTTEILRSM-LYR----GADLIRDVEF 427
+ F+ + +TGD + +AD ++ T E ++ YR G D+
Sbjct: 102 NQKFNSWGISCLELTGDNETYSTKNIQDADIILTTPEKFDAVSRYRVTSGGLGFFSDIAL 161
Query: 428 VIFDEVHYVNDQTRGVVWEEVI----IMLPQH---------VKFILLSATVPNTFEFANW 474
V+ DEVH +ND RG E ++ I+ H V+ + +SAT+PN + A W
Sbjct: 162 VLIDEVHLLND-PRGAALEAIVSRLKILSSNHELRSSTLASVRLLAVSATIPNIEDLAEW 220
Query: 475 V 475
+
Sbjct: 221 L 221
>CE07565 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfamily
Length = 273
Score = 58.5 bits (140), Expect = 5e-08
Identities = 42/120 (35%), Positives = 57/120 (47%), Gaps = 10/120 (8%)
Query: 620 KERSAIHIFIEKSISRLRKDDRELPQITKIRSLLSRGIAVHHGGLLPIVKELIEILFAKG 679
KER+ +FI+ + R DR + S L+ G+A HH GL +E IE+ F +
Sbjct: 148 KERANGLLFIKHGLERNGCKDRN------VMSTLAWGVAYHHAGLTMEERECIELGFREK 201
Query: 680 FVKLLFATETFAMGLNLPTRTVVFSEIQKHDGEKKRYLLPGEFTQMAGRAGRRGKDKTGT 739
+ +L AT T A G+NLP V+ K L + QM GRAGR G GT
Sbjct: 202 NIVILVATSTLASGVNLPAERVLI----KAQPRGPSALTSLNYRQMVGRAGRTGHATRGT 257
>Hs18556835 [R] KOG0949 Predicted helicase DEAD-box superfamily
Length = 556
Score = 58.2 bits (139), Expect = 6e-08
Identities = 47/183 (25%), Positives = 85/183 (45%), Gaps = 17/183 (9%)
Query: 311 RTWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAI--AMSKRNMTKTIYTSPI 368
R F + +Q+E + +++ +S + A TS+GKT + Y + + + ++ +Y +P
Sbjct: 301 RVQDFIPNAWQQELLDVVDKNESAVIVAPTSSGKTYASYYCMEKVLRESDVGVVVYVAPA 360
Query: 369 KALSNQKFRDFKEDFDDVD------VGLITGDVQINPEADCLIMTT-----EILRSMLYR 417
K+L Q + F G T D N +C ++ T EIL +R
Sbjct: 361 KSLVGQVAATVENRFTKTLPAGRTLCGAFTRDYCHNV-LNCQVLITVPECFEILLLAPHR 419
Query: 418 GADLIRDVEFVIFDEVHYVNDQTRGVVWEEVIIMLPQHVKFILLSATVPNTFEFANWVGR 477
+ + +VIFDEVHY+ + WE +++++ F++LSAT+ N W+
Sbjct: 420 -QKWVERIRYVIFDEVHYLGREVGAKFWELLLVII--RCPFLVLSATINNPNLLTKWLQS 476
Query: 478 TKQ 480
KQ
Sbjct: 477 VKQ 479
>ECU07g0830 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily
Length = 1058
Score = 52.0 bits (123), Expect = 5e-06
Identities = 36/114 (31%), Positives = 55/114 (47%), Gaps = 8/114 (7%)
Query: 633 ISRLRKDDRELPQITK------IRSLLSRGIAVHHGGLLPIVKELIEILFAKGFVKLLFA 686
I+RL D+ E + + L+ RG+ VHH GL ++ +E F + V++L
Sbjct: 340 IARLLGDEGERRNVKAGTVTGALLELVRRGVGVHHAGLPRRIRLYMEDEFKRRGVRVLVT 399
Query: 687 TETFAMGLNLPTRTVVFSEIQKHDGEKKRYLLPG--EFTQMAGRAGRRGKDKTG 738
T T A G+NLP V+ + +D K + G + Q+ GRAGR D G
Sbjct: 400 TSTLAWGVNLPAYAVIIKGTRFYDSSKGGFADVGILDVLQIFGRAGRPQFDSRG 453
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.317 0.135 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,632,980
Number of Sequences: 60738
Number of extensions: 2471578
Number of successful extensions: 8420
Number of sequences better than 1.0e-05: 45
Number of HSP's better than 0.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 8201
Number of HSP's gapped (non-prelim): 125
length of query: 1001
length of database: 30,389,216
effective HSP length: 116
effective length of query: 885
effective length of database: 23,343,608
effective search space: 20659093080
effective search space used: 20659093080
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)