ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII0817 good A KOG0947 RNA processing and modification Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII0817 292141 292974 278
(278 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YLR398c [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-... 345 3e-95
SPCC550.03c [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 D... 229 3e-60
At3g46960 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEA... 188 8e-48
Hs20631987 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DE... 172 5e-43
YJL050w [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box ... 158 7e-39
CE20651 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-... 146 4e-35
SPAC17H9.02 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-... 141 9e-34
SPAC6F12.16c [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD... 139 3e-33
At1g59760 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-bo... 133 3e-31
Hs14721269 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-b... 129 4e-30
CE06562 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box ... 129 5e-30
7298249 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box ... 116 4e-26
At2g06990 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-bo... 115 7e-26
ECU04g1290 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DE... 109 5e-24
ECU04g0910 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-b... 102 5e-22
>YLR398c [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-box
superfamily
Length = 1287
Score = 345 bits (886), Expect = 3e-95
Identities = 172/258 (66%), Positives = 212/258 (81%)
Query: 21 LKVQQSILQRLKIVKELNSLSVLKDTKFADKYDVFHERFELQSQIKNIYHMMSEQNLNLL 80
LK+ Q +L R I E+ L +K + + ++ +I+ +YH+MS+QNL+LL
Sbjct: 1030 LKIHQILLDRTNIRDEIFKLKSIKCPNLSQHIVPKFKAHVIKKKIEELYHLMSDQNLSLL 1089
Query: 81 PDYESRLSVLKETGFIDYNNNVLLKGRVACEINTGYELVLTELILDNFLGDFEPEEIVAL 140
PDYE RL+VLK+T FID N+NVLLKGRVACEIN+GYELVLTELILDNFLG FEPEEIVAL
Sbjct: 1090 PDYEKRLAVLKDTEFIDQNHNVLLKGRVACEINSGYELVLTELILDNFLGSFEPEEIVAL 1149
Query: 141 LSAFVYEGRTKDEEPPAITPRLAKGKEKIREIYAKVQEVSERYQIPATQEEAEFLEKKRF 200
LS FVYEG+T++EEPP +TPRLAKGK++I EIY K+ V +QIP TQ+EAEFL++KRF
Sbjct: 1150 LSVFVYEGKTREEEPPIVTPRLAKGKQRIEEIYKKMLCVFNTHQIPLTQDEAEFLDRKRF 1209
Query: 201 ALLNVIYEWARGLSFKEIMEMSVEAEGTIVRVISRLDEVCREVRNAAVIIGNSVLHQKMT 260
A++NV+YEWARGLSFKEIMEMS EAEGT+VRVI+ LDE+CREV+ A++IIGNS LH KM+
Sbjct: 1210 AMMNVVYEWARGLSFKEIMEMSPEAEGTVVRVITWLDEICREVKTASIIIGNSTLHMKMS 1269
Query: 261 QAQELIKRDIVFAASLYL 278
+AQELIKRDIVFAASLYL
Sbjct: 1270 RAQELIKRDIVFAASLYL 1287
>SPCC550.03c [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-box
superfamily
Length = 1213
Score = 229 bits (584), Expect = 3e-60
Identities = 119/243 (48%), Positives = 164/243 (66%), Gaps = 2/243 (0%)
Query: 36 ELNSLSVLKDTKFADKYDVFHERFELQSQIKNIYHMMSEQNLNLLPDYESRLSVLKETGF 95
+L+ ++ F + + ++ +EL+S I N+ +S+QNL LLPDYE R+ VL+E G+
Sbjct: 973 KLSGNPIISTPNFLTHFALAYQEYELESNIDNLSSYISDQNLELLPDYEQRIKVLQELGY 1032
Query: 96 IDYNNNVLLKGRVACEINTGYELVLTELILDNFLGDFEPEEIVALLSAFVYEGRTKDEEP 155
ID VLLKGRVACEIN+ ELVLTELIL+N L DF EE +ALLSAFV++ +T+ E
Sbjct: 1033 IDAERTVLLKGRVACEINSTSELVLTELILENSLADFSCEETIALLSAFVFDEKTEVE-- 1090
Query: 156 PAITPRLAKGKEKIREIYAKVQEVSERYQIPATQEEAEFLEKKRFALLNVIYEWARGLSF 215
P I+P L KGKE I + KV ++ E YQ+ E +F + RF L+ V YEWARG+SF
Sbjct: 1091 PTISPHLQKGKEMILSVAEKVNQIQEHYQVLYFNEGNDFESQPRFGLMEVCYEWARGMSF 1150
Query: 216 KEIMEMSVEAEGTIVRVISRLDEVCREVRNAAVIIGNSVLHQKMTQAQELIKRDIVFAAS 275
I +++ EG+IVR I RLDEV RE R AA ++G+S ++ KM + Q LI+R+IVF S
Sbjct: 1151 NRITDLTDVLEGSIVRTIIRLDEVLRECRGAARVVGDSSMYTKMEECQNLIRRNIVFCPS 1210
Query: 276 LYL 278
LY+
Sbjct: 1211 LYM 1213
>At3g46960 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-box
superfamily
Length = 1347
Score = 188 bits (477), Expect = 8e-48
Identities = 98/217 (45%), Positives = 143/217 (65%), Gaps = 3/217 (1%)
Query: 62 QSQIKNIYHMMSEQNLNLLPDYESRLSVLKETGFIDYNNNVLLKGRVACEINTGYELVLT 121
++ +K++ MS++ L +P ++ R+ VLK G ID + V +KGRVACE+N+G EL+ T
Sbjct: 1131 KTDLKDLEFQMSDEALLQMPAFQGRIDVLKNIGCIDDDLVVQIKGRVACEMNSGEELICT 1190
Query: 122 ELILDNFLGDFEPEEIVALLSAFVYEGRTKDEEPPAITPRLAKGKEKIREIYAKVQEVSE 181
+ +N + EPEE VA++SAFV++ K+ P +TP+LAK K+++ + ++ E+
Sbjct: 1191 VCLFENQFEELEPEEAVAIMSAFVFQ--QKNTSAPTLTPKLAKAKQRLYDTAIRLGELQA 1248
Query: 182 RYQIPATQEEAEFLEKKRFALLNVIYEWARGLSFKEIMEMSVEAEGTIVRVISRLDEVCR 241
+Y + EE E +F L+ V+YEWA+G F EI E++ EG IVR I RLDE CR
Sbjct: 1249 QYNLQIDPEEYA-QENLKFGLVEVVYEWAKGTPFAEICELTDVPEGLIVRTIVRLDETCR 1307
Query: 242 EVRNAAVIIGNSVLHQKMTQAQELIKRDIVFAASLYL 278
E +NAA I+GNS LH+KM A IKRDIVFAASLY+
Sbjct: 1308 EFKNAAAIMGNSALHKKMDAASNAIKRDIVFAASLYV 1344
>Hs20631987 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-box
superfamily
Length = 1246
Score = 172 bits (436), Expect = 5e-43
Identities = 100/259 (38%), Positives = 153/259 (58%), Gaps = 9/259 (3%)
Query: 21 LKVQQSILQRLKIVKELNSLSVLKDTKFADKYDVFHERFELQSQIKNIYHMMSEQNLNLL 80
+ V + L+ K+ + + + +F +Y ER ++Q +++ + ++S+Q+L LL
Sbjct: 993 MSVVEGGLRARKLEELIQGAQCVHSPRFPAQYLKLRERMQIQKEMERLRFLLSDQSLLLL 1052
Query: 81 PDYESRLSVLKETGFIDYNNNVLLKGRVACEINTGYELVLTELILDNFLGDFEPEEIVAL 140
P+Y R+ VL+ G++D V L GRVAC +++ +EL+LTEL+ DN L PEEI AL
Sbjct: 1053 PEYHQRVEVLRTLGYVDEVGTVKLAGRVACAMSS-HELLLTELMFDNALSTLRPEEIAAL 1111
Query: 141 LSAFVYE--GRTKDEEPPAITPRLAKGKEKIREIYAKVQEVSERYQIPATQEEAEFLEKK 198
LS V + G D+ P L +G E++R + ++ EV + T EE F+ +
Sbjct: 1112 LSGLVCQSPGDAGDQLPNT----LKQGIERVRAVAKRIGEVQVACGLNQTVEE--FVGEL 1165
Query: 199 RFALLNVIYEWARGLSFKEIMEMSVEAEGTIVRVISRLDEVCREVRNAAVIIGNSVLHQK 258
F L+ V+YEWARG+ F E+ +S EG +VR I RL E+CR +R AA ++G VL K
Sbjct: 1166 NFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRCIQRLAEMCRSLRGAARLVGEPVLGAK 1225
Query: 259 MTQAQELIKRDIVFAASLY 277
M A L++RDIVFAASLY
Sbjct: 1226 METAATLLRRDIVFAASLY 1244
>YJL050w [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box superfamily
Length = 1073
Score = 158 bits (400), Expect = 7e-39
Identities = 92/244 (37%), Positives = 145/244 (58%), Gaps = 5/244 (2%)
Query: 36 ELNSLSVLKDTKFADKYDVFHERFELQSQIKNIYHMMSE-QNLNLLPDYESRLSVLKETG 94
+L+S + + + Y + + +L +K + +SE Q + L D R VL+ G
Sbjct: 834 KLSSNPLTNSMRLEELYGKYSRKHDLHEDMKQLKRKISESQAVIQLDDLRRRKRVLRRLG 893
Query: 95 FIDYNNNVLLKGRVACEINTGYELVLTELILDNFLGDFEPEEIVALLSAFVYEGRTKDEE 154
F N+ + LKGRVACEI++G EL+LTELI + + +PE+ ALLS F ++ R K E
Sbjct: 894 FCTPNDIIELKGRVACEISSGDELLLTELIFNGNFNELKPEQAAALLSCFAFQERCK--E 951
Query: 155 PPAITPRLAKGKEKIREIYAKVQEVSERYQIPATQEEAEFLEKKRFALLNVIYEWARGLS 214
P + P LA+ + +REI AK+ ++ + +I E +++E R L+ V+YEW RG +
Sbjct: 952 APRLKPELAEPLKAMREIAAKIAKIMKDSKIEVV--EKDYVESFRHELMEVVYEWCRGAT 1009
Query: 215 FKEIMEMSVEAEGTIVRVISRLDEVCREVRNAAVIIGNSVLHQKMTQAQELIKRDIVFAA 274
F +I +M+ EG+++R+ RL+E+ +E+ + A IGNS L +KM +LI RDIV A
Sbjct: 1010 FTQICKMTDVYEGSLIRMFKRLEELVKELVDVANTIGNSSLKEKMEAVLKLIHRDIVSAG 1069
Query: 275 SLYL 278
SLYL
Sbjct: 1070 SLYL 1073
>CE20651 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-box
superfamily
Length = 1260
Score = 146 bits (368), Expect = 4e-35
Identities = 91/265 (34%), Positives = 143/265 (53%), Gaps = 7/265 (2%)
Query: 14 SIAANPSLKVQQSILQRLKIVKEL-NSLSVLKDTKFADKYDVFHERFELQSQIKNIYHMM 72
S N +L++L+ L S T+F + + V +R ++ +I+++ + +
Sbjct: 999 SFCQNLDTSFDTDLLEKLEYNLNLPQSFPARHCTRFDEHFSVLRDRIRIERKIESLEYEL 1058
Query: 73 SEQNLNLLPDYESRLSVLKETGFIDYNNNVLLKGRVACEINTGYELVLTELILDNFLGDF 132
S L L +Y +RL VL+ F++ V LKGR+ CEI+ EL++TELILD
Sbjct: 1059 SSDALLLSEEYHNRLKVLEALNFVE-QKMVSLKGRIGCEIHH-QELLITELILDYKFHQR 1116
Query: 133 EPEEIVALLSAFVYEGRTKDEEPPAITPRLAKGKEKIREIYAKVQEVSERYQIPATQEEA 192
P E+ ALLS + + E + E ++ + +++ V+ +++ +
Sbjct: 1117 SPAELAALLSTLTCQYNSGREMQFGGDTVFGEISESVKSVLTRLESVASKHKSQISDLGC 1176
Query: 193 EFLEKKRFALLNVIYEWARGLSFKEIMEMSVEAEGTIVRVISRLDEVCREVRNAAVIIGN 252
E RF L+ V+YEWA G F +IMEM+ EG IV+ I RLDEVC++VRNA I+G+
Sbjct: 1177 EI----RFDLMEVVYEWANGTPFYQIMEMTDCQEGLIVKCIQRLDEVCKDVRNAGRIVGD 1232
Query: 253 SVLHQKMTQAQELIKRDIVFAASLY 277
L +KM + I+RDIVFAASLY
Sbjct: 1233 PALVEKMEEVSASIRRDIVFAASLY 1257
>SPAC17H9.02 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box superfamily
Length = 1030
Score = 141 bits (356), Expect = 9e-34
Identities = 88/258 (34%), Positives = 148/258 (57%), Gaps = 15/258 (5%)
Query: 28 LQRLKIVK-ELNSLSVLKDTKFADKYDVFHERFELQSQIKNIYHMMSEQNLNL-LPDYES 85
L++L+I++ +L KD+K +Y F ++ L++QIK+I ++ + L + +
Sbjct: 781 LRKLEILEPKLFDSPYYKDSKHRAEYHEFRKKLNLRAQIKDISTKITNTEAIIQLRELKI 840
Query: 86 RLSVLKETGFIDYNNNVLLKGRVACEINTGYELVLTELILDNFLGDFEPEEIVALLSAFV 145
R VL+ GF N + +KGRVACEI +G EL+L ELI F PEEI A LS FV
Sbjct: 841 RQRVLRRLGFCTLENVIDIKGRVACEITSGDELLLVELIFQGFFNQMPPEEIAAALSCFV 900
Query: 146 YEGRTKDEEPPAITPRLAKGKEKIREIYAKVQEVSERYQIPATQE-----EAEFLEKKRF 200
YE +++ T L KE +++Y + E ++R + + E+++L + +
Sbjct: 901 YEDKSE-----VSTLNL---KEPFKKMYLTIIEAAKRIATVSLESKLQFNESDYLHQFKP 952
Query: 201 ALLNVIYEWARGLSFKEIMEMSVEAEGTIVRVISRLDEVCREVRNAAVIIGNSVLHQKMT 260
++ + W G SF+EI +S EG+IVR RLDE+ +++ +AA+++GN+ L +K
Sbjct: 953 DIMEPVSLWINGASFQEICIVSKLYEGSIVRTFRRLDELLKQLEHAAIVLGNNELKEKSV 1012
Query: 261 QAQELIKRDIVFAASLYL 278
++ + RDI+F+ASLYL
Sbjct: 1013 LTEQKLHRDIIFSASLYL 1030
>SPAC6F12.16c [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box superfamily
Length = 1117
Score = 139 bits (351), Expect = 3e-33
Identities = 84/256 (32%), Positives = 152/256 (58%), Gaps = 11/256 (4%)
Query: 31 LKIVKELNSLS-------VLKDTKFADKYDVFHERFELQSQIKNIYHMMSE-QNLNLLPD 82
+K++K++N L + ++ +KY + + L ++K++ +S+ +++ L +
Sbjct: 865 IKLMKKVNILESRLLSNPLHNFSELEEKYAEYLRKLALLEEVKDLKKKLSKARSIMQLDE 924
Query: 83 YESRLSVLKETGFIDYNNNVLLKGRVACEINTGYELVLTELILDNFLGDFEPEEIVALLS 142
SR VL+ GF ++ + +KGRVACEI++G L+LTELI + D PE+ ALLS
Sbjct: 925 LNSRKRVLRRLGFTTSDDVIEVKGRVACEISSGDGLLLTELIFNGMFNDLTPEQCAALLS 984
Query: 143 AFVYEGRTKDEEPPAITPRLAKGKEKIREIYAKVQEVSERYQIPATQEEAEFLEKKRFAL 202
V++ +++ E + LA + ++E+ ++ +VS+ + +EE ++ + +L
Sbjct: 985 CLVFQEKSEVENQ-RMKEELAGPLKILQEMARRIAKVSKESKQELNEEE--YVNSFKPSL 1041
Query: 203 LNVIYEWARGLSFKEIMEMSVEAEGTIVRVISRLDEVCREVRNAAVIIGNSVLHQKMTQA 262
+ V+Y WA G SF +I +M+ EG+++R+ RL+E+ R++ +AA +IGN+ L QKM
Sbjct: 1042 MEVVYAWAHGASFAQICKMTDVYEGSLIRMFRRLEELIRQMVDAAKVIGNTSLQQKMEDT 1101
Query: 263 QELIKRDIVFAASLYL 278
I RDIVF+ASLYL
Sbjct: 1102 IACIHRDIVFSASLYL 1117
>At1g59760 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box superfamily
Length = 988
Score = 133 bits (334), Expect = 3e-31
Identities = 87/258 (33%), Positives = 144/258 (55%), Gaps = 16/258 (6%)
Query: 28 LQRLKIVKEL-NSLSVLKDTKFADKYDVFHERFELQSQIKNIYHMM-SEQNLNLLPDYES 85
++RL+ ++ L + K +K V + EL ++IK++ + S L + ++
Sbjct: 740 VRRLEALENLFEKHKIAKSPLITEKLKVLQMKEELIAKIKSLKKTVRSSTALAFKDELKA 799
Query: 86 RLSVLKETGFIDYNNNVLLKGRVACEINTGYELVLTELILDNFLGDFEPEEIVALLSAFV 145
R VL+ G+I +N V LKG+VACEI++ EL LTEL+ D + EE+V+LLS FV
Sbjct: 800 RKRVLRRLGYITSDNVVELKGKVACEISSAEELTLTELMFSGIFKDAKVEELVSLLSCFV 859
Query: 146 YEGRTKDEEPPAITPRLAKGKEKIREIYAKVQEVSERYQIPATQEEAE-----FLEKKRF 200
+ R D AK +E++ ++ ++Q+ + R + E F++ R
Sbjct: 860 WRERLPDA---------AKPREELDLLFIQLQDTARRVAEVQLDCKVEIDVESFVQSFRP 910
Query: 201 ALLNVIYEWARGLSFKEIMEMSVEAEGTIVRVISRLDEVCREVRNAAVIIGNSVLHQKMT 260
++ +Y WA+G F E+ME++ EG+++R I R++EV +++ AA IG + L K+
Sbjct: 911 DIMEAVYAWAKGSKFYEVMEIARVFEGSLIRAIRRMEEVLQQLIVAAKSIGETQLEAKLE 970
Query: 261 QAQELIKRDIVFAASLYL 278
+A IKRDIVFAASLYL
Sbjct: 971 EAVSKIKRDIVFAASLYL 988
>Hs14721269 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box superfamily
Length = 1042
Score = 129 bits (325), Expect = 4e-30
Identities = 78/235 (33%), Positives = 132/235 (55%), Gaps = 5/235 (2%)
Query: 45 DTKFADKYDVFHERFELQSQIKNIYHMMSEQNLNL-LPDYESRLSVLKETGFIDYNNNVL 103
D Y + ++ ++ IK+ + + L + + + R VL+ GF ++ +
Sbjct: 812 DPNLETVYTLCEKKAQIAIDIKSAKRELKKARTVLQMDELKCRKRVLRRLGFATSSDVIE 871
Query: 104 LKGRVACEINTGYELVLTELILDNFLGDFEPEEIVALLSAFVYEGRTKDEEPPAITPRLA 163
+KGRVACEI++ EL+LTE++ + D E+ ALLS FV++ + E P +T +LA
Sbjct: 872 MKGRVACEISSADELLLTEMMFNGLFNDLSAEQATALLSCFVFQENSS--EMPKLTEQLA 929
Query: 164 KGKEKIREIYAKVQEVSERYQIPATQEEAEFLEKKRFALLNVIYEWARGLSFKEIMEMSV 223
+++E ++ +VS ++ +E +L + L++V+Y WA G +F I +M+
Sbjct: 930 GPLRQMQECAKRIAKVSAEAKLEIDEET--YLSSFKPHLMDVVYTWATGATFAHICKMTD 987
Query: 224 EAEGTIVRVISRLDEVCREVRNAAVIIGNSVLHQKMTQAQELIKRDIVFAASLYL 278
EG+I+R + RL+E+ R++ AA IGN+ L K + IKRDIVFAASLYL
Sbjct: 988 VFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKIKRDIVFAASLYL 1042
>CE06562 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box superfamily
Length = 1026
Score = 129 bits (324), Expect = 5e-30
Identities = 78/238 (32%), Positives = 132/238 (54%), Gaps = 13/238 (5%)
Query: 43 LKDTK--FADKYDVFHERFELQSQIKNIYHMMSEQNLNLLPDYESRLSVLKETGFIDYNN 100
+KD K F K D E L+++ K++ + + LN +R VL+ G++ ++
Sbjct: 800 MKDLKKQFEQKQDAVKELNALKAERKSVQSTLHLEELN------NRKRVLRRLGYLGNDD 853
Query: 101 NVLLKGRVACEINTGYELVLTELILDNFLGDFEPEEIVALLSAFVYEGRTKDEEPPAITP 160
++LKG VACE++ EL+LTE++L + + ALLS FV++ + P +
Sbjct: 854 ALVLKGSVACELSASDELILTEMLLKGIFNTLDVAQTAALLSCFVFQDKCA---APKLAT 910
Query: 161 RLAKGKEKIREIYAKVQEVSERYQIPATQEEAEFLEKKRFALLNVIYEWARGLSFKEIME 220
L ++ E V +VS ++ +++ ++ L++V+Y+W G +F EI++
Sbjct: 911 ELQTCLSELHEQARNVAKVSNECKMEVMEDK--YVSSFNPGLMDVVYQWVNGATFSEIVK 968
Query: 221 MSVEAEGTIVRVISRLDEVCREVRNAAVIIGNSVLHQKMTQAQELIKRDIVFAASLYL 278
+ EG+I+R + RL+EV RE+ NAA + N L QK A++ +KRDIVFAASLYL
Sbjct: 969 TTDVFEGSIIRTLRRLEEVLREMINAAKALANKELEQKFEDARKNLKRDIVFAASLYL 1026
>7298249 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box superfamily
Length = 1055
Score = 116 bits (290), Expect = 4e-26
Identities = 67/225 (29%), Positives = 131/225 (57%), Gaps = 5/225 (2%)
Query: 55 FHERFELQSQIKNIY-HMMSEQNLNLLPDYESRLSVLKETGFIDYNNNVLLKGRVACEIN 113
+ ++ LQ Q++++ + + ++L + + + R VL+ G+ + + KGRVACE++
Sbjct: 835 YQDKVTLQKQLQDLKAELKAARSLLQMDELKHRKRVLRRMGYCKPGDVIEFKGRVACELS 894
Query: 114 TGYELVLTELILDNFLGDFEPEEIVALLSAFVYEGRTKDEEPPAITPRLAKGKEKIREIY 173
+ EL++TE+I + D + VALLS FV + ++ + A L+ ++++
Sbjct: 895 SADELLMTEMIFNGVFNDLTAPQAVALLSCFVCDEKSSESVKSAT--ELSGPLRSMQDLA 952
Query: 174 AKVQEVSERYQIPATQEEAEFLEKKRFALLNVIYEWARGLSFKEIMEMSVEAEGTIVRVI 233
++ +VS ++ + +++K + L++V+ W +G SF + +M+ EG+I+R +
Sbjct: 953 RRIAKVSTECKLDLDADT--YVDKFKPFLMDVVLAWCKGSSFLAVCKMTDIFEGSIIRCM 1010
Query: 234 SRLDEVCREVRNAAVIIGNSVLHQKMTQAQELIKRDIVFAASLYL 278
RL+E+ R++ A+ IGN+ L K ++ L+KRDIVFAASLYL
Sbjct: 1011 RRLEELLRQMCQASKTIGNTDLENKFSEGIRLLKRDIVFAASLYL 1055
>At2g06990 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box superfamily
Length = 996
Score = 115 bits (288), Expect = 7e-26
Identities = 78/238 (32%), Positives = 125/238 (51%), Gaps = 18/238 (7%)
Query: 55 FHERFELQSQIKNIYHMMSEQNLNLLPD-YESRLSVLKETGFIDYNNNVLLKGRVACEIN 113
F + E+ +I+ + M + L D ++R VLK+ G ID + V +KGR AC I+
Sbjct: 763 FQRKAEVNYEIQQLKSKMRDSQLQKFRDELKNRSRVLKKLGHIDADGVVQVKGRAACLID 822
Query: 114 TGYELVLTELILDNFLGDFEPEEIVALLSAFVYEGRTKDEEPPAITPRLAKGKEKIREIY 173
TG EL++TEL+ + D + ++ AL S F+ K E + L K +++++
Sbjct: 823 TGDELLVTELMFNGTFNDLDHHQVAALASCFI--PVDKSNEQVNLRNELTKPLQQLQDSA 880
Query: 174 AKVQEVSERYQIPATQEEAEFLEKK-RFALLNVIYEWARGLSFKEIMEMSVEAEGTIVRV 232
K+ E+ ++ E E++E R L++VIY W++G SF EI++M+ EG+I+R
Sbjct: 881 RKIAEIQHECKLEIDVE--EYVESTIRPFLMDVIYSWSKGASFAEIIQMTDIFEGSIIRS 938
Query: 233 ISRLDEVCR------------EVRNAAVIIGNSVLHQKMTQAQELIKRDIVFAASLYL 278
RLDE ++R AA +G S L K A E ++R I+FA SLYL
Sbjct: 939 ARRLDEFLNQKSDDTLIGDFLQLRAAAEAVGESSLESKFAAASESLRRGIMFANSLYL 996
>ECU04g1290 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-box
superfamily
Length = 881
Score = 109 bits (272), Expect = 5e-24
Identities = 71/234 (30%), Positives = 124/234 (52%), Gaps = 17/234 (7%)
Query: 45 DTKFADKYDVFHERFELQSQIKNIYHMMSEQNLNLLPDYESRLSVLKETGFIDYNNNVLL 104
D +++ V +R E+ + IK Y++ S L ++ +Y R+ LK+ GF++ + +
Sbjct: 665 DQHYSNALRVHCKRKEM-NDIKIRYNVCS---LGMIDEYNRRMEFLKKKGFVE--EMITI 718
Query: 105 KGRVACEINTGYELVLTELILDNFLGDFEPEEIVALLSAFVYEGRTKDEEPPAITPRLAK 164
KGR A EI+T E+++ E+I N + +IV+L+S+ ++E E A+ +
Sbjct: 719 KGRAAAEIHTVNEVLVVEMIFSNEFRQMDGRKIVSLMSSMIHEEADGQELGKALYDECKR 778
Query: 165 GKEKIREIYAKVQEVSERYQIPATQEEAEFLEKKRFALLNVIYEWARGLSFKEIMEMSVE 224
E RE+ + E+ IP F+L++ +Y+W G S +I+
Sbjct: 779 MDECFRELSRDLDEL----MIPP-------FTPLNFSLVDAVYDWCNGSSLGKIVSRYNV 827
Query: 225 AEGTIVRVISRLDEVCREVRNAAVIIGNSVLHQKMTQAQELIKRDIVFAASLYL 278
EGT VR++ RL+E CRE+ + + +IG+ L +K+ A +KRDI+F SLYL
Sbjct: 828 LEGTFVRLVLRLEECCRELISVSTMIGDKSLEEKIGDASASMKRDIIFLPSLYL 881
>ECU04g0910 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box superfamily
Length = 933
Score = 102 bits (255), Expect = 5e-22
Identities = 71/216 (32%), Positives = 113/216 (51%), Gaps = 14/216 (6%)
Query: 63 SQIKNIYHMMSEQNLNLLPDYESRLSVLKETGFIDYNNNVLLKGRVACEINTGYELVLTE 122
+ +K IYHM + + + VLK+ + D + VL+KGR+ACEI++G ELVLTE
Sbjct: 732 NSLKEIYHMR---------ECKKMIEVLKKLEYCD-DTTVLIKGRMACEISSGDELVLTE 781
Query: 123 LILDNFLGDFEPEEIVALLSAFVYEGRTKDEEPPAITPRLAKGKEKIREIYAKVQEVSER 182
+I + E V LLS V+E D + ++ + + KV +V +
Sbjct: 782 MIFNGDFAGIPVEHFVPLLSCIVFE--EWDSDSFVLSDENKLYYRLLSDSVEKVCKVLKS 839
Query: 183 YQIPATQEEAEFLEKKRFALLNVIYEWARGLSFKEIMEMSVEAEGTIVRVISRLDEVCRE 242
I + A +L++ + L++V+ W G +F I + EG+I+R RL+E+ R+
Sbjct: 840 CGIEI--DPAAYLKRFSYELMDVVRMWVCGCTFISICSKTSIFEGSIIRTFKRLEELLRQ 897
Query: 243 VRNAAVIIGNSVLHQKMTQAQELIKRDIVFAASLYL 278
+ +AA +IGN+ L IKRDIVFA SLY+
Sbjct: 898 LSSAARVIGNTELENMFALGIVKIKRDIVFANSLYI 933
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.319 0.135 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,770,887
Number of Sequences: 60738
Number of extensions: 596509
Number of successful extensions: 2027
Number of sequences better than 1.0e-05: 15
Number of HSP's better than 0.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1989
Number of HSP's gapped (non-prelim): 17
length of query: 278
length of database: 30,389,216
effective HSP length: 105
effective length of query: 173
effective length of database: 24,011,726
effective search space: 4154028598
effective search space used: 4154028598
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)