ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII0833 good U KOG1302 Intracellular trafficking, secretion, and vesicular transport Vacuolar sorting protein VPS33/slp1 (Sec1 family)
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII0833 296600 298516 639
(639 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YLR396c [U] KOG1302 Vacuolar sorting protein VPS33/slp1 (Sec1 fa... 289 8e-78
Hs18105056 [U] KOG1302 Vacuolar sorting protein VPS33/slp1 (Sec1... 132 2e-30
SPBC1703.15c [U] KOG1302 Vacuolar sorting protein VPS33/slp1 (Se... 106 1e-22
At3g54860 [U] KOG1302 Vacuolar sorting protein VPS33/slp1 (Sec1 ... 94 6e-19
7293600 [U] KOG1302 Vacuolar sorting protein VPS33/slp1 (Sec1 fa... 84 9e-16
Hs18105058 [U] KOG1302 Vacuolar sorting protein VPS33/slp1 (Sec1... 83 1e-15
CE00012 [U] KOG1302 Vacuolar sorting protein VPS33/slp1 (Sec1 fa... 69 2e-11
CE04214 [U] KOG1299 Vacuolar sorting protein VPS45/Stt10 (Sec1 f... 54 7e-07
>YLR396c [U] KOG1302 Vacuolar sorting protein VPS33/slp1 (Sec1 family)
Length = 691
Score = 289 bits (740), Expect = 8e-78
Identities = 204/674 (30%), Positives = 337/674 (49%), Gaps = 93/674 (13%)
Query: 6 DAKQFKKHNRDTFINAVETLQDCLKPVTLVVQESILPILDSLFTFSQLKTATQIENVVKC 65
+ K+F N D + + LVVQ S+LP+L+SL TF L +T + +
Sbjct: 6 NTKKFSLTNADGLCATLNEISQ--NDEVLVVQPSVLPVLNSLLTFQDLTQSTPVRKITLL 63
Query: 66 DDEAANVLQSLKEDTT---LIYLVDVRXXXXXXXXXXXXXXXXQISKPNVISVTYNDRSE 122
DD+ ++ L S LI+L+DVR +S ++I + +
Sbjct: 64 DDQLSDDLPSALGSVPQMDLIFLIDVRTSLRLPPQLLDAAQKHNLSSLHIIYCRWKPSFQ 123
Query: 123 EL----------------------GLVRDYLRELVRVPLTLVKWHVLPTESLDENILDCK 160
++ L+EL TL W +LP +DEN+L
Sbjct: 124 NTLEDTEQWQKDGFDLNSKKTHFPNVIESQLKELSN-EYTLYPWDLLPFPQIDENVLLTH 182
Query: 161 LLLTSEGINMYYPSDPYFRSASINILLDNLSNVLLSILDKENITISKSLALGDNSRRLVD 220
L E +NMYYP+ +SA+ +IL+D++ N L S++ + N I+ +++G+ S+R
Sbjct: 183 SLYNMENVNMYYPNLRSLQSATESILVDDMVNSLQSLIFETNSIITNVVSIGNLSKRCSH 242
Query: 221 IVKQRMAIRDTAETQFIKNAKFG-KLKSGERNDLIVFERSVDTITPMMADLTYSGILSEV 279
++K+R+ T FIK +G + G DLI+ ER+ D ITP++ LTY+GIL ++
Sbjct: 243 LLKKRIDEHQTENDLFIKGTLYGERTNCGLEMDLIILERNTDPITPLLTQLTYAGILDDL 302
Query: 280 DQISNVPK-----------DGGIWDLLKFLNFGAVGSNLNTLAKDLQSQYESRHAANTIS 328
+ ++ K + IW+ LKFLNFG++G LN LAK+LQ+QY++RH A ++
Sbjct: 303 YEFNSGIKIKEKDMNFNYKEDKIWNDLKFLNFGSIGPQLNKLAKELQTQYDTRHKAESVH 362
Query: 329 EIKNFVDNLGDLQNRQALLKQHTVQSSELMEYLKDTD---FKDKIDFEHGVYADLLDYST 385
EIK FVD+LG LQ RQA LK HT SS++++ ++ + F ++ E ++L +T
Sbjct: 363 EIKEFVDSLGSLQQRQAFLKNHTTLSSDVLKVVETEEYGSFNKILELE----LEILMGNT 418
Query: 386 IVNTITEMMC-----FDKSELSILRLCCLFSQIKHGIREKEFNLLRQELVDTFGNEMIFK 440
+ N I +++ ++ + ILRL CL S K+ +REK++ LR ++D++G E F+
Sbjct: 419 LNNDIEDIILELQYQYEVDQKKILRLICLLSLCKNSLREKDYEYLRTFMIDSWGIEKCFQ 478
Query: 441 LNTLDRYRLF------------SKKHTDGLKNYQLICKSFDTIP--------DVDIEPTK 480
L +L F + K T K Y+ I + F+T+P + E
Sbjct: 479 LESLAELGFFTSKTGKTDLHITTSKSTRLQKEYRYISQWFNTVPIEDEHAADKITNENDD 538
Query: 481 PRDMNYAFSGVVPIVSRLLQSMFDRSVFVKNNNSILQSFIHSREPTLDKLEPLMKE---S 537
+ +A+SGVVP+ RL+Q ++DRS+ N +S Q FI SREP + + E L+++
Sbjct: 539 FSEATFAYSGVVPLTMRLVQMLYDRSILFHNYSS-QQPFILSREPRVSQTEDLIEQLYGD 597
Query: 538 QIPLDERHWV--KTEGKIIGDVKDES---------------DLTFLIFIGGITHGEISTI 580
++E WV KI +K + D+ ++F+GG+T GEI+ +
Sbjct: 598 SHAIEESIWVPGTITKKINASIKSNNRRSIDGSNGTFHAAEDIALVVFLGGVTMGEIAIM 657
Query: 581 NYLKEKLRAKKIRK 594
+L++ L K I K
Sbjct: 658 KHLQKILGKKGINK 671
>Hs18105056 [U] KOG1302 Vacuolar sorting protein VPS33/slp1 (Sec1 family)
Length = 596
Score = 132 bits (331), Expect = 2e-30
Identities = 99/365 (27%), Positives = 164/365 (44%), Gaps = 53/365 (14%)
Query: 251 NDLIVFERSVDTITPMMADLTYSGILSEVDQISN----------VPK---DGG------- 290
++L++ +R+VD +TP+ LTY G++ E+ I N PK DGG
Sbjct: 225 DNLLLLDRNVDLLTPLATQLTYEGLIDEIYGIQNSYVKLPPEKFAPKKQGDGGKDLPTEA 284
Query: 291 ----------IWDLLKFLNFGAVGSNLNTLAKDLQSQYESRHAANTISEIKNFVDNLGDL 340
++ ++ NF AVGS L+ AK + + +E RH A T+ EIK FV L +
Sbjct: 285 KKLQLNSAEELYAEIRDKNFNAVGSVLSKKAKIISAAFEERHNAKTVGEIKQFVSQLPHM 344
Query: 341 QNRQALLKQHTVQSSELMEYLKDTDFKDKIDFEHGVYADLLDYSTIVNTITEMMCFDKSE 400
Q + L HT + + + DF DK+ E + +D + N I + + S
Sbjct: 345 QAARGSLANHTSIAELIKDVTTSEDFFDKLTVEQ-EFMSGIDTDKVNNYIEDCIAQKHSL 403
Query: 401 LSILRLCCLFSQIKHGIREKEFNLLRQELVDTFGNEMIFKLNTLDRYRLFSKKHTDGLKN 460
+ +LRL CL S G+++K + ++E++ T+G E I L+ L++ L K T G N
Sbjct: 404 IKVLRLVCLQSVCNSGLKQKVLDYYKREILQTYGYEHILTLHNLEKAGLL-KPQTGGRNN 462
Query: 461 YQLICKSFDTIPDVDIEPTKPRDMNYAFSGVVPIVSRLLQSMFDRSVFVKNNNSILQSFI 520
Y I K+ D D+ P D++Y +SG P+ RL Q +
Sbjct: 463 YPTIRKTLRLWMD-DVNEQNPTDISYVYSGYAPLSVRLAQLL------------------ 503
Query: 521 HSREPTLDKLEPLMKESQIPLDERHWVKTEGKIIGDVKDESDLTFLIFIGGITHGEISTI 580
P +E +++ P E G E+ +T + F+GG+T EI+ +
Sbjct: 504 --SRPGWRSIEEVLRILPGPHFEERQPLPTGLQKKRQPGENRVTLIFFLGGVTFAEIAAL 561
Query: 581 NYLKE 585
+L +
Sbjct: 562 RFLSQ 566
>SPBC1703.15c [U] KOG1302 Vacuolar sorting protein VPS33/slp1 (Sec1 family)
Length = 592
Score = 106 bits (264), Expect = 1e-22
Identities = 107/520 (20%), Positives = 218/520 (41%), Gaps = 83/520 (15%)
Query: 116 TYNDRSEELGLVRDYLRELVRVPLTLVKWHVLPTES------LDENILDCKLLLTSEGIN 169
TY + VR + R+++R+ T++ VLPT + L E + +LL+T ++
Sbjct: 75 TYENAKLVATHVRQFQRDMLRIESTVI---VLPTSNILFETVLQEEGVFGELLVTEWPLH 131
Query: 170 MYYPSDPYFRSASIN------ILLDNLSNVLLSILDKENITISKSLALGDNSRRLVDIVK 223
P D S + LL ++ L+ ++ + + G + +++++++
Sbjct: 132 AV-PLDKDLLSLELGPEKLEESLLQRSTDALIDF-ERTHGRFPRVSGRGPYAAKMLELLE 189
Query: 224 QRMAIRDTAETQFIKNAKFGKLK---SGERNDLIVFERSVDTITPMMADLTYSGILSEV- 279
+ T FGK++ S + +++ +RS+D ITP + LTY G L E+
Sbjct: 190 KTYQEEATIN--------FGKVEGEISALYDSVLLVDRSLDRITPFLTQLTYFGFLDEIL 241
Query: 280 ----------------DQISNV---------PKDGGIWDLLKFLNFGAVGSNLNTLAKDL 314
++ SN I ++ +NF +G L+ +A+ L
Sbjct: 242 GIQQMNVKLPSSLVNRNEASNTGPMKKFSLSSSSSQITKEIRDINFNCIGPYLSKIARKL 301
Query: 315 QSQYESRHAANTISEIKNFVDNLGDLQNRQALLKQHTVQSSELMEYLKDTDFKDKIDFEH 374
S +E R A T+++I++FV LG LQ+ L HT + L+++ K+ F+ + +H
Sbjct: 302 SSDFEGRRQAKTVNQIRDFVSKLGSLQSEHTSLNIHTGLAETLVQHTKNNYFQKLLQLQH 361
Query: 375 GVYADLLDYSTIVNTITEMMCFDKSELSILRLCCLFSQIKHGIREKEFNLLRQELVDTFG 434
+ D T N + E++ + + R+ CL S +G+R K+ + R+E+ T+G
Sbjct: 362 -LLVSHADSFTQFNLLDEIIYAEAPVEEVFRVLCLASITTNGLRRKDIDHYRREITQTYG 420
Query: 435 NEMIFKLNTLDRYRLFSKKHTDGLK-----NYQLICKSFDTIPDVDIEPTKPRDMNYAFS 489
+ L L + + + +Y ++ + D +++ P D+ Y +S
Sbjct: 421 YYHLLTFQALIDAGLLRLRQSTNISLQKSLSYSTWLNTYPLVKD-EVDEQNPEDIAYTYS 479
Query: 490 GVVPIVSRLLQSMF---DRSVFVKNNNSILQSFIHSREPTLDKLEPLMKESQIPLDERHW 546
G P+ + + D + ++ +++ +K+ P ++ +P R
Sbjct: 480 GYGPLSVHIAYDILKGRDNEEKILKLQNMPGTYVDKWTLDQEKVMPKNLKTNVPGKRR-- 537
Query: 547 VKTEGKIIGDVKDESDLTFLIFIGGITHGEISTINYLKEK 586
+ FIGG T+ E++ L+EK
Sbjct: 538 -----------------VLVFFIGGCTYTELAAFRLLQEK 560
>At3g54860 [U] KOG1302 Vacuolar sorting protein VPS33/slp1 (Sec1 family)
Length = 535
Score = 94.0 bits (232), Expect = 6e-19
Identities = 85/332 (25%), Positives = 145/332 (43%), Gaps = 55/332 (16%)
Query: 205 ISKSLALGDNSRRLVDIVKQRMAIRDTAETQFIKNAKFGKLKSGERNDLIVFERSVDTIT 264
ISK A G S R+ DI+ RM + + + + E + LI+ +R VD +T
Sbjct: 198 ISKMRAKGKASVRVADILN-RMQVEEPVNSNDVGRP--------EVDTLILLDREVDMVT 248
Query: 265 PMMADLTYSGILSEVDQISN--------------------VPKDGGIWDLLKFLNFGAVG 304
PM + LTY G++ E+ ISN VP + I L +L
Sbjct: 249 PMCSQLTYEGLIDEILHISNGAVEVDSSVMGAQQEGKKMKVPLNSRI--LFPYLPDAIWS 306
Query: 305 SNLNTLAKDLQSQYESRHA-----------ANTISEIKNFVDNLGDLQNRQALLKQHTVQ 353
L A ++ Y ++ T+SE+K+FV L L + +H
Sbjct: 307 QVLRQKAMTMKEDYTEINSISNGVWLYNAQTQTVSELKDFVKKLNSLPE----MTRHIHL 362
Query: 354 SSELMEYLKDTDFKDKIDFEHGVYADLLDYSTIVNTITEMMCFDKSELSILRLCCLFSQI 413
+ L + F ++D E + +Y I EM+ + ++LRL LFS
Sbjct: 363 AQHLTTFTSKQSFNSQLDMEQ-TLVEAENYDICYEYIEEMIHKQEPLTNVLRLLVLFSVT 421
Query: 414 KHGIREKEFNLLRQ-----ELVDTFGNEMIFKLNTLDRYRLFSKKHTDGLKNYQLICKSF 468
G+ +K+F+ +RQ EL+ ++G E + LN L++ L K+ + N+ + ++
Sbjct: 422 NSGLPKKQFDYIRQVKLPMELLHSYGFEHVVTLNNLEKAGLLKKQ--EFKSNWLTVKRTL 479
Query: 469 DTIPDVDIEPTKPRDMNYAFSGVVPIVSRLLQ 500
I + D + ++P D+ Y +SG P+ RL+Q
Sbjct: 480 KLIVE-DTDTSRPNDIAYVYSGYAPLSIRLIQ 510
>7293600 [U] KOG1302 Vacuolar sorting protein VPS33/slp1 (Sec1 family)
Length = 617
Score = 83.6 bits (205), Expect = 9e-16
Identities = 85/382 (22%), Positives = 165/382 (42%), Gaps = 63/382 (16%)
Query: 248 GERNDLIVFERSVDTITPMMADLTYSGILSEVDQI---------SNVPKDGGI------- 291
G + LI+ +RS+D ++P+ LTY G++ E I N P DG +
Sbjct: 223 GVVDQLILLDRSIDLLSPLATQLTYEGLIDEFYGIRQNKLTLPAENFPSDGALPGGGGSG 282
Query: 292 --------------------------WDLLKFLNFGAVGSNLNTLAKDLQSQYESRHAAN 325
+ L+ +F V L A+++ Q +
Sbjct: 283 PRVEESQSLLGDTEKKTILLHSGEQLYAELRNKHFNEVTKLLARKAREIHVQMHATSQDK 342
Query: 326 TISEIKNFVDNL-GDLQNRQALLKQHTVQSSELMEYLKDTDFKDKI--DFEHGVYADLLD 382
++ EIK+FV+NL L ++ +HT + L E + F D + + E V AD+
Sbjct: 343 SVQEIKSFVENLLPQLMAQKKATSEHTAIAGLLHEQVNAVRFADDLAAEQEFMVCADIDK 402
Query: 383 YSTIVNTITEMMCFDKSELS-ILRLCCLFSQIKHGIREKEFNLLRQELVDTFGNEMIFKL 441
S + + + C + EL+ +LRL C+ G +EK N ++ELV +G E++ +
Sbjct: 403 PSAYIEDL--IAC--RVELNRVLRLICMQCHAASGFKEKLLNHYKRELVHVYGLEVLLTI 458
Query: 442 NTLDRYRLFSKKHTDGLKNYQLICKSFDTIPDVDIEPTKPRDMNYAFSGVVPIVSRLLQS 501
+ L++ L + + Y ++ K+ D ++E +P+D++Y S P+ +R++
Sbjct: 459 SNLEKSGLLHLQTES--RAYSVLRKTLHLTVDDNVE-IEPKDISYVHSFYAPLTARIV-- 513
Query: 502 MFDRSVFVKNNNSILQSFIHSREPTLDKLEPLMKESQIPLDERHWVKTEGKIIGDVKDES 561
+ S+ ++ + PT + + + + + RH V T + G + +
Sbjct: 514 --EHSLKPLGWQTLKSQINNLPGPTFEDFQAQL----VGIGGRHTVTTVSE--GSLLNVP 565
Query: 562 DLTFLIFIGGITHGEISTINYL 583
+ + F+GG T EI+ + +L
Sbjct: 566 RVVLVCFVGGCTFAEIAALRFL 587
>Hs18105058 [U] KOG1302 Vacuolar sorting protein VPS33/slp1 (Sec1 family)
Length = 617
Score = 83.2 bits (204), Expect = 1e-15
Identities = 89/388 (22%), Positives = 160/388 (40%), Gaps = 77/388 (19%)
Query: 249 ERNDLIVFERSVDTITPMMADLTYSGILSEVDQISNVPKDGG------------------ 290
E + + +R VD +T + + + Y G++ + +I D G
Sbjct: 224 EIGHIFLLDRDVDFVTALCSQVVYEGLVDDTFRIKCGSVDFGPEVTSSDKSLKVLLNAED 283
Query: 291 -IWDLLKFLNFGAVGSNLNTLAKDLQSQYESRHAANTISEIKNFVDN-LGDLQNRQALLK 348
+++ ++ +F V L+ A++LQ+QY+ R + I ++KNFV L L+ LL
Sbjct: 284 KVFNEIRNEHFSNVFGFLSQKARNLQAQYDRRRGMD-IKQMKNFVSQELKGLKQEHRLLS 342
Query: 349 QHTVQSSELMEYLKDTDFKDKIDFEHGVYADLLDYSTIVNTITEMMCFDKSELSILRLCC 408
H +M+ DF++ I EH + + + I E + S + LRL C
Sbjct: 343 LHIGACESIMKKKTKQDFQELIKTEHALLEGF-NIRESTSYIEEHIDRQVSPIESLRLMC 401
Query: 409 LFSQIKHGIREKEFNLLRQELVDTFGNEMIFKLNTLDRYRLFSK---------------- 452
L S ++G+ K++ L+ + + ++G E + + L R L ++
Sbjct: 402 LLSITENGLIPKDYRSLKTQYLQSYGPEHLLTFSNLRRAGLLTEQAPGDTLTAVESKVSK 461
Query: 453 --------KHTDGL------KNYQLICKSFDTIPDVD--IEPTKPRDMNYAFSGV-VPIV 495
K TD N++ I K + IP VD + PRDM Y FSG VP+
Sbjct: 462 LVTDKAAGKITDAFSSLAKRSNFRAISKKLNLIPRVDGEYDLKVPRDMAYVFSGAYVPLS 521
Query: 496 SRLLQSMFDRSVFVKNNNSILQSFIHSREPTLDKLEPLMKESQIPLDERHWVKTEGKIIG 555
R+++ + +R + LD++ L+ S + + E K
Sbjct: 522 CRIIEQVLERRSW----------------QGLDEVVRLLNCSDFAFTD---MTKEDKA-- 560
Query: 556 DVKDESDLTFLIFIGGITHGEISTINYL 583
+ L ++F+GG T EIS + +L
Sbjct: 561 -SSESLRLILVVFLGGCTFSEISALRFL 587
>CE00012 [U] KOG1302 Vacuolar sorting protein VPS33/slp1 (Sec1 family)
Length = 576
Score = 69.3 bits (168), Expect = 2e-11
Identities = 75/318 (23%), Positives = 143/318 (44%), Gaps = 46/318 (14%)
Query: 220 DIVKQRMAIRDTAETQFI-KNAK--FGKLKSGERNDLIVFERSVDTITPMMADLTYSGIL 276
D+ K IR++AE + KN G LK N +++ +R +D +TPM++ LT+ G+L
Sbjct: 194 DVAKMMGKIRNSAEADSMTKNLDPIEGLLKI---NRIVLIDRWMDPLTPMLSQLTFYGLL 250
Query: 277 SEVDQISNV------------PKDGG------------IWDLLKFLNFGAVGSNLNTLAK 312
E+ I V KDG ++ LK + AV + +
Sbjct: 251 DEIYGIGMVNSVKVPEMEFKNEKDGDPFQEKEVYLIDEVYHRLKHSHINAVSIEASKVLA 310
Query: 313 DLQSQYESRHAANTISEIKNFVDNLGDLQNRQALLKQHTVQSSELMEYLKDTDFKDKIDF 372
+++ + +++E V + + NR+ +++ H ++ +E+++ D I
Sbjct: 311 EIRDDEQFDRDKMSVAEYSVLVKKMPKIINRKKMIEVH-MRLAEMIQSHVYCKQSDSIKL 369
Query: 373 EHGVYADLLDYSTIVNTI--TEMMCFDKSEL-SILRLCCLFSQIKHGIREKEFNLLRQEL 429
E DLL+YS I E + FD S L ++LRL + S G++ R+ +
Sbjct: 370 ER----DLLEYSDSDKAIPLIEDLIFDASPLNAVLRLISVHSLTCGGLKPSVLQHYRRIV 425
Query: 430 VDTFGNEMIFKLNTLDRYRLFSKKHTDGLKN-------YQLICKSFDTIPDVDIEPTKPR 482
++G+ + K+ + + L +K G +Q + K+ D +P+ + K
Sbjct: 426 NQSYGSSALNKVLKMQKMGLIREKGGGGKMQCEYAQMMFQQMKKNHDMLPE-EFSEAKLD 484
Query: 483 DMNYAFSGVVPIVSRLLQ 500
DM YA+SG P++ ++L+
Sbjct: 485 DMAYAYSGFSPLLCKMLE 502
>CE04214 [U] KOG1299 Vacuolar sorting protein VPS45/Stt10 (Sec1 family)
Length = 547
Score = 53.9 bits (128), Expect = 7e-07
Identities = 48/210 (22%), Positives = 89/210 (41%), Gaps = 18/210 (8%)
Query: 235 QFIKNAKFGKLKSGERNDLIVFERSVDTITPMMADLTYSGILSEVDQISN---VPKDGGI 291
QFI+ S L++ ERS D +TP++ TY ++ E+ ++N D I
Sbjct: 195 QFIRRENGLFENSRADTTLLIIERSQDAVTPLLNQWTYEAMIHEMLTLTNNRCTCTDQNI 254
Query: 292 WDLLKFL-----------NFGAVGSNLNTLAKDLQSQYESRHAANTISEIKNFVDNLGDL 340
+L L NFG +G N+ TL + Q + +I ++K FV++
Sbjct: 255 --VLSELHDEFFARNITANFGEIGQNIKTLISEFQEKKHINKNLESIQDMKKFVEDYPQF 312
Query: 341 QNRQALLKQHTVQSSELMEYLKDTDFKDKIDFEHGVYADLLDYSTIVNTITEMMCFDKS- 399
+ + +H EL ++ + + E + +D D+ +N + ++ K+
Sbjct: 313 KKISGTVSKHVSLVGELSNLVQKHNLLGVSEVEQAIVSD-GDHGKCINLVRGLLKNTKTR 371
Query: 400 ELSILRLCCLFSQIKHGIREKEFNLLRQEL 429
E+ I+RL L++ E N L +L
Sbjct: 372 EVDIIRLVLLYALRFENAPGNELNSLISQL 401
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.318 0.136 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,793,335
Number of Sequences: 60738
Number of extensions: 1398112
Number of successful extensions: 3786
Number of sequences better than 1.0e-05: 8
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 3761
Number of HSP's gapped (non-prelim): 15
length of query: 639
length of database: 30,389,216
effective HSP length: 113
effective length of query: 526
effective length of database: 23,525,822
effective search space: 12374582372
effective search space used: 12374582372
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)