ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactII0842   suspect: LH   C     KOG4527  Energy production and conversion                               Cytochrome c oxidase, subunit VIIc/COX8

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactII0842  300590  300808 73   
         (73 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YLR395c [C] KOG4527 Cytochrome c oxidase subunit VIIc/COX8             83   6e-17

>YLR395c [C] KOG4527 Cytochrome c oxidase subunit VIIc/COX8
          Length = 78

 Score = 83.2 bits (204), Expect = 6e-17
 Identities = 36/50 (72%), Positives = 41/50 (82%)

Query: 24 HFKEGVYSNIPVKIHNRKIPYAFIHFGFFALGFAVPFISSYVQLKKFGAF 73
          HFK+GVY NIP K+  RK PYA  HFGFFA+GFAVPF++ YVQLKK GAF
Sbjct: 29 HFKDGVYENIPFKVKGRKTPYALSHFGFFAIGFAVPFVACYVQLKKSGAF 78


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.332    0.142    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,832,547
Number of Sequences: 60738
Number of extensions: 127285
Number of successful extensions: 1078
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1077
Number of HSP's gapped (non-prelim): 1
length of query: 73
length of database: 30,389,216
effective HSP length: 49
effective length of query: 24
effective length of database: 27,413,054
effective search space: 657913296
effective search space used: 657913296
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)