ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactII0846   suspect: LH   DR    KOG4739  Cell cycle control, cell division, chromosome partitioning     Uncharacterized protein involved in synaptonemal complex formation
r_klactII0846   suspect: LH   DR    KOG4739  General function prediction only                               Uncharacterized protein involved in synaptonemal complex formation

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactII0846  302480 301539 -314 
         (314 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YLR394w [DR] KOG4739 Uncharacterized protein involved in synapto...   136   4e-32

>YLR394w [DR] KOG4739 Uncharacterized protein involved in synaptonemal
           complex formation
          Length = 482

 Score =  136 bits (342), Expect = 4e-32
 Identities = 88/259 (33%), Positives = 135/259 (51%), Gaps = 24/259 (9%)

Query: 3   PPVDLNQIWVNCSQCHKPYNNQQGTSNGK-FWLTSCAHILCDKHYHNGMTVCPVCTTSRI 61
           P     Q +V C  CH+       TS+G    LTSCAHILC +H      VCP+C +S I
Sbjct: 43  PDSIFEQPFVYCGVCHRR------TSHGDPLRLTSCAHILCSQHSPLTSKVCPICRSSDI 96

Query: 62  SVLPLDGDSSKLPTEVQSFFKPFVSQLEPLYTVANFQWESMVQLCEYYQDMCLKLQEKCN 121
           S++ L  +S +LPT+++ FF+P    LE LY V+ FQ   + + C+YYQ+ CLKL+EKC 
Sbjct: 97  SIINLV-ESKQLPTDIRIFFEPLPPLLESLYNVSQFQLNGLSKQCQYYQNHCLKLREKCA 155

Query: 122 RQRQLLYQAKEELDKFTALKKELRMKDT--NRDVIS------MVTRNDSRNLINAKDGIE 173
           RQ+QLLYQAK ELD    LKK ++  ++  N + +S      + TRN  +N       ++
Sbjct: 156 RQQQLLYQAKIELDSMAILKKRIQELESVLNHNNVSSMSVGVLPTRNSHQNHYQPPPTVD 215

Query: 174 RDNQESFISKLQNSHRLKPSRTTSDDGNESPNISHVLAESTS--IGRTAPILVP------ 225
               ++ + + +    +K  +  S   N S N +  +  STS  + +  P+ +       
Sbjct: 216 LTVDDNSLEEFEAKSFIKKLKKNSSLRNSSKNNNGTVTPSTSGRVNKNQPLFMETLNNPN 275

Query: 226 HSPTTPISMNNKSGSNINN 244
            +   P  MN  + SN+ N
Sbjct: 276 RNSIPPPGMNPNANSNLPN 294


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.314    0.128    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,951,252
Number of Sequences: 60738
Number of extensions: 794123
Number of successful extensions: 3167
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3165
Number of HSP's gapped (non-prelim): 1
length of query: 314
length of database: 30,389,216
effective HSP length: 106
effective length of query: 208
effective length of database: 23,950,988
effective search space: 4981805504
effective search space used: 4981805504
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)