ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII0896 good K KOG3405 Transcription RNA polymerase subunit K
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII0896 316225 316437 71
(71 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YPR187w [K] KOG3405 RNA polymerase subunit K 141 1e-34
SPCC1020.04c [K] KOG3405 RNA polymerase subunit K 126 6e-30
At5g51940 [K] KOG3405 RNA polymerase subunit K 121 2e-28
At2g04630 [K] KOG3405 RNA polymerase subunit K 116 5e-27
Hs11527390 [K] KOG3405 RNA polymerase subunit K 115 1e-26
7296761 [K] KOG3405 RNA polymerase subunit K 114 2e-26
CE02117 [K] KOG3405 RNA polymerase subunit K 108 1e-24
ECU08g0320 [K] KOG3405 RNA polymerase subunit K 95 2e-20
>YPR187w [K] KOG3405 RNA polymerase subunit K
Length = 155
Score = 141 bits (356), Expect = 1e-34
Identities = 71/71 (100%), Positives = 71/71 (100%)
Query: 1 MTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYLPDGSFE 60
MTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYLPDGSFE
Sbjct: 85 MTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYLPDGSFE 144
Query: 61 DWSVEELIVDL 71
DWSVEELIVDL
Sbjct: 145 DWSVEELIVDL 155
>SPCC1020.04c [K] KOG3405 RNA polymerase subunit K
Length = 142
Score = 126 bits (316), Expect = 6e-30
Identities = 61/68 (89%), Positives = 66/68 (96%)
Query: 1 MTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYLPDGSFE 60
MTKYERARILGTRALQISMNAPV VDLEGETDPL+IAMKELA+KKIPL++RRYLPDGS+E
Sbjct: 75 MTKYERARILGTRALQISMNAPVLVDLEGETDPLQIAMKELAQKKIPLLVRRYLPDGSYE 134
Query: 61 DWSVEELI 68
DWSV ELI
Sbjct: 135 DWSVAELI 142
>At5g51940 [K] KOG3405 RNA polymerase subunit K
Length = 144
Score = 121 bits (303), Expect = 2e-28
Identities = 58/70 (82%), Positives = 64/70 (90%)
Query: 1 MTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYLPDGSFE 60
MTKYERARILGTRALQISMNAPV V+LEGETDPL IAMKEL ++KIP IRRYLPDGSFE
Sbjct: 65 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPDGSFE 124
Query: 61 DWSVEELIVD 70
+W V+ELIV+
Sbjct: 125 EWGVDELIVE 134
>At2g04630 [K] KOG3405 RNA polymerase subunit K
Length = 144
Score = 116 bits (291), Expect = 5e-27
Identities = 56/70 (80%), Positives = 63/70 (90%)
Query: 1 MTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYLPDGSFE 60
MTKYERARILGTRALQISMNAPV V+LEGETDPL IAMKEL ++KIP IRRYLPD S+E
Sbjct: 65 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPDMSYE 124
Query: 61 DWSVEELIVD 70
+W V+ELIV+
Sbjct: 125 EWGVDELIVE 134
>Hs11527390 [K] KOG3405 RNA polymerase subunit K
Length = 127
Score = 115 bits (288), Expect = 1e-26
Identities = 54/69 (78%), Positives = 63/69 (91%)
Query: 1 MTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYLPDGSFE 60
MTKYERAR+LGTRALQI+M APV V+LEGETDPL IAMKEL +KIP++IRRYLPDGS+E
Sbjct: 57 MTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYE 116
Query: 61 DWSVEELIV 69
DW V+ELI+
Sbjct: 117 DWGVDELII 125
>7296761 [K] KOG3405 RNA polymerase subunit K
Length = 131
Score = 114 bits (286), Expect = 2e-26
Identities = 52/69 (75%), Positives = 65/69 (93%)
Query: 1 MTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYLPDGSFE 60
MTKYERAR+LGTRALQI+M AP+ V+L+GETDPL+IAMKEL +KKIP++IRRYLPD S+E
Sbjct: 60 MTKYERARVLGTRALQIAMCAPIMVELDGETDPLQIAMKELKQKKIPIIIRRYLPDHSYE 119
Query: 61 DWSVEELIV 69
DWS++ELI+
Sbjct: 120 DWSIDELIM 128
>CE02117 [K] KOG3405 RNA polymerase subunit K
Length = 137
Score = 108 bits (271), Expect = 1e-24
Identities = 48/67 (71%), Positives = 60/67 (88%)
Query: 1 MTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYLPDGSFE 60
MTKYERAR+LGTRALQI+M APV V+LEGETDPL IA KEL +++IP+++RRYLPDGS+E
Sbjct: 66 MTKYERARVLGTRALQIAMGAPVMVELEGETDPLEIARKELKQRRIPIIVRRYLPDGSYE 125
Query: 61 DWSVEEL 67
DW ++L
Sbjct: 126 DWPTDQL 132
>ECU08g0320 [K] KOG3405 RNA polymerase subunit K
Length = 144
Score = 94.7 bits (234), Expect = 2e-20
Identities = 43/69 (62%), Positives = 55/69 (79%)
Query: 1 MTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYLPDGSFE 60
MTKYE+A ++G RA Q+S AP FVD+ ET+PL IA EL+EKKIP +IRR LPD SFE
Sbjct: 70 MTKYEKAHVIGVRATQLSAGAPPFVDIGNETNPLNIANMELSEKKIPFIIRRKLPDSSFE 129
Query: 61 DWSVEELIV 69
DW+V+EL++
Sbjct: 130 DWAVDELMI 138
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.321 0.140 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,018,515
Number of Sequences: 60738
Number of extensions: 132278
Number of successful extensions: 297
Number of sequences better than 1.0e-05: 8
Number of HSP's better than 0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 289
Number of HSP's gapped (non-prelim): 8
length of query: 71
length of database: 30,389,216
effective HSP length: 47
effective length of query: 24
effective length of database: 27,534,530
effective search space: 660828720
effective search space used: 660828720
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)