ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactII0988   suspect: LH   S     KOG4784  Function unknown                                               Uncharacterized conserved protein

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactII0988  345371 344310 -354 
         (354 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YJR141w [S] KOG4784 Uncharacterized conserved protein                 122   1e-27

>YJR141w [S] KOG4784 Uncharacterized conserved protein
          Length = 347

 Score =  122 bits (305), Expect = 1e-27
 Identities = 80/285 (28%), Positives = 129/285 (45%), Gaps = 26/285 (9%)

Query: 76  KSGKTFDRSSNHIMEKLVAKWMRKDLVKHP-FVFYCLDCDTPVISSINCKRIRDMPSEFW 134
           KS K +D S   IM     +W +++L     F   CL+C   +IS  NC+ + DMPSEFW
Sbjct: 79  KSSKIYDSS---IMSLPDGRWTKEELRSDSDFSIECLNCKQKIISKDNCQVLNDMPSEFW 135

Query: 135 ADFMDYWHCHKPDMEPHQKGHHVAASETLLHRYNNPLNPAVGEIMLSDSFIYINKDWIPE 194
            + MDYWHCHKPD++  +  +     ET        L P+  EI++  S+        P 
Sbjct: 136 FELMDYWHCHKPDVKEDKSSY--TRFET--------LKPSKNEILIGSSYF----QGTPA 181

Query: 195 KF-----IYDEELVRSRSCNTVIGSFTKEGSVRIGKWNLRAEIGGFLDVFDPSNYVLYQI 249
            F       + + V    C+ V+G  T     ++ KW L+    G    F P   +   +
Sbjct: 182 TFENVATTKENDNVLCIKCSAVLGQVTAGSLYKLHKWKLQLIRSGNTYKFPPECDITISL 241

Query: 250 YNELKAHSIRLFHLKGDDKRYIIWVFGIGSCIQFDKSRMLNNCLKILYRDGKPAESE--K 307
            N +KA+S R   +K   +  ++W+F +   +    ++     +K+LY +     +    
Sbjct: 242 INVVKANSCRYVLVKCKTESLLVWIFSVDIGVTLTGNKSFKRAMKLLYTNSVTTINRCLN 301

Query: 308 NQNIAELKVEENSALINFIQHLESVNRQLPEELRLLNEWKVSYIS 352
            Q + EL  +E S    F   L+  N  LP  ++ + EW +SY S
Sbjct: 302 RQVVEELDFQETS-FNAFYSALQHTNALLPSSMKKIGEWTISYTS 345


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.322    0.139    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,220,290
Number of Sequences: 60738
Number of extensions: 1024278
Number of successful extensions: 2404
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2401
Number of HSP's gapped (non-prelim): 1
length of query: 354
length of database: 30,389,216
effective HSP length: 107
effective length of query: 247
effective length of database: 23,890,250
effective search space: 5900891750
effective search space used: 5900891750
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)