ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII1041 good U KOG3489 Intracellular trafficking, secretion, and vesicular transport Mitochondrial import inner membrane translocase, subunit TIM8
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactII1041 369906 369646 -87  
         (87 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YJR135w-a [U] KOG3489 Mitochondrial import inner membrane transl...   138   2e-33
SPAC13G6.04 [U] KOG3489 Mitochondrial import inner membrane tran...    82   1e-16
7292637 [U] KOG3489 Mitochondrial import inner membrane transloc...    59   9e-10
Hs4758152 [U] KOG3489 Mitochondrial import inner membrane transl...    55   1e-08
Hs6912712 [U] KOG3489 Mitochondrial import inner membrane transl...    52   1e-07
At5g50810 [U] KOG3489 Mitochondrial import inner membrane transl...    50   5e-07

>YJR135w-a [U] KOG3489 Mitochondrial import inner membrane translocase
          subunit TIM8
          Length = 87

 Score =  138 bits (347), Expect = 2e-33
 Identities = 65/85 (76%), Positives = 77/85 (90%)

Query: 1  MSSISQNDLSNLDDGSKKEIMTFLESENSKQKVQMSIHQFTNLCFKNCISNVQNADLSSQ 60
          MSS+S +DL++LDD SKKEI TFLE ENSKQKVQMSIHQFTN+CFK C+ +V +++LSSQ
Sbjct: 1  MSSLSTSDLASLDDTSKKEIATFLEGENSKQKVQMSIHQFTNICFKKCVESVNDSNLSSQ 60

Query: 61 EEQCLNNCVNRFLDTNIRIVKGLQS 85
          EEQCL+NCVNRFLDTNIRIV GLQ+
Sbjct: 61 EEQCLSNCVNRFLDTNIRIVNGLQN 85


>SPAC13G6.04 [U] KOG3489 Mitochondrial import inner membrane translocase
          subunit TIM8
          Length = 98

 Score = 82.4 bits (202), Expect = 1e-16
 Identities = 37/81 (45%), Positives = 53/81 (64%), Gaps = 1/81 (1%)

Query: 1  MSSISQNDLSNLDDGSKKEIMTFLESENSKQKVQMSIHQFTNLCFKNCISNVQNADLSSQ 60
          M+  ++N +++L +  + E+  F+ESE  K K+Q +IHQFT+ C+  CI N+ N  L   
Sbjct: 1  MADATKNPIADLSESEQLELSKFIESEQQKVKLQQAIHQFTSTCWPKCIGNIGN-KLDKS 59

Query: 61 EEQCLNNCVNRFLDTNIRIVK 81
          EEQCL NCV RFLD N  I+K
Sbjct: 60 EEQCLQNCVERFLDCNFHIIK 80


>7292637 [U] KOG3489 Mitochondrial import inner membrane translocase
          subunit TIM8
          Length = 88

 Score = 59.3 bits (142), Expect = 9e-10
 Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 2/75 (2%)

Query: 7  NDLSNLDDGSKKEIMTFLESENSKQKVQMSIHQFTNLCFKNCISNVQNADLSSQEEQCLN 66
          +D  NL  G+ KE+  FL  E  K +V   IH+F  +C++ CI    +  L    E CL+
Sbjct: 2  SDFENLS-GNDKELQEFLLIEKQKAQVNAQIHEFNEICWEKCIGK-PSTKLDHATETCLS 59

Query: 67 NCVNRFLDTNIRIVK 81
          NCV+RF+DT++ I +
Sbjct: 60 NCVDRFIDTSLLITQ 74


>Hs4758152 [U] KOG3489 Mitochondrial import inner membrane translocase
          subunit TIM8
          Length = 97

 Score = 55.5 bits (132), Expect = 1e-08
 Identities = 26/69 (37%), Positives = 39/69 (55%), Gaps = 1/69 (1%)

Query: 19 EIMTFLESENSKQKVQMSIHQFTNLCFKNCISNVQNADLSSQEEQCLNNCVNRFLDTNIR 78
          ++  F+E E  KQ+ Q  +HQ T LC++ C+       L S+ E C  NCV RF+DT+  
Sbjct: 18 QLQHFIEVETQKQRFQQLVHQMTELCWEKCMDK-PGPKLDSRAEACFVNCVERFIDTSQF 76

Query: 79 IVKGLQSIQ 87
          I+  L+  Q
Sbjct: 77 ILNRLEQTQ 85


>Hs6912712 [U] KOG3489 Mitochondrial import inner membrane translocase
          subunit TIM8
          Length = 83

 Score = 52.4 bits (124), Expect = 1e-07
 Identities = 23/78 (29%), Positives = 40/78 (50%), Gaps = 1/78 (1%)

Query: 9  LSNLDDGSKKEIMTFLESENSKQKVQMSIHQFTNLCFKNCISNVQNADLSSQEEQCLNNC 68
          ++ L +  + E+   + +E  K +    +H F  LC+  C+    N  L S+ E CL++C
Sbjct: 1  MAELGEADEAELQRLVAAEQQKAQFTAQVHHFMELCWDKCVEKPGNR-LDSRTENCLSSC 59

Query: 69 VNRFLDTNIRIVKGLQSI 86
          V+RF+DT + I      I
Sbjct: 60 VDRFIDTTLAITSRFAQI 77


>At5g50810 [U] KOG3489 Mitochondrial import inner membrane translocase
          subunit TIM8
          Length = 77

 Score = 50.1 bits (118), Expect = 5e-07
 Identities = 20/67 (29%), Positives = 37/67 (54%)

Query: 19 EIMTFLESENSKQKVQMSIHQFTNLCFKNCISNVQNADLSSQEEQCLNNCVNRFLDTNIR 78
          E++ FL  E  +  V   + + T++C+  CI++   +  SS E  CL +C  R++D ++ 
Sbjct: 10 ELLQFLAQEKERAMVNEMVSKMTSVCWDKCITSAPGSKFSSSESSCLTHCAQRYMDMSMI 69

Query: 79 IVKGLQS 85
          I+K   S
Sbjct: 70 IMKRFNS 76


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.314    0.127    0.346 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,725,494
Number of Sequences: 60738
Number of extensions: 160969
Number of successful extensions: 574
Number of sequences better than 1.0e-05: 6
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 567
Number of HSP's gapped (non-prelim): 6
length of query: 87
length of database: 30,389,216
effective HSP length: 63
effective length of query: 24
effective length of database: 26,562,722
effective search space: 637505328
effective search space used: 637505328
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)