ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactII1094   suspect: LH   S     KOG2846  Function unknown                                               Predicted membrane protein

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactII1094 387796 386966 -277 
         (277 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YHR192w [S] KOG2846 Predicted membrane protein                        131   1e-30

>YHR192w [S] KOG2846 Predicted membrane protein
          Length = 278

 Score =  131 bits (329), Expect = 1e-30
 Identities = 82/280 (29%), Positives = 130/280 (46%), Gaps = 22/280 (7%)

Query: 1   MLSAVRKIVSGDNDVKKLVQRYNKDLSSITNKIHDYETKLKGIEDRAKSLRATVTYYYLT 60
           M SA+ K V G  + K  V +Y  DLS IT++IH  +  LK  +      ++ +T+Y + 
Sbjct: 1   MFSALGKWVRGSRNDKDFVTKYTADLSQITSQIHQLDVALKKSQSILSQWQSNLTFYGIA 60

Query: 61  LLVCIIAYVYLKYSSSR------AILCSXXXXXXXXXXXXXXTRFYLMLNKKYESRLSAL 114
           L V  ++Y Y +Y   R      A+LC               T+ Y   N     +L+ L
Sbjct: 61  LTVLALSYTYWEYHGYRPYLVVTALLC----IGSLILFKWALTKLYAFYNNNRLRKLAKL 116

Query: 115 ISLHQEKMEELKQKTNFYHTNSLIQRYSSGESGSXXXXXXXXXEVKAKHXXXXXXXXXXX 174
            ++HQ+K+E+LK++T++  T+S+IQR+SSGE  +         E+ AK+           
Sbjct: 117 RAIHQKKLEKLKEETHYNATSSIIQRFSSGEDQNDDAMVLLDDELNAKYQELNNLKTELE 176

Query: 175 XXRTNEKQKTQDVEAREKWFDKALGILAGG---DDIKTLQPSISLIVCSQCKMSFGCYSV 231
             +     K    E  + WFDK + +LAGG   D   +L P    I+C QC     CY +
Sbjct: 177 KFKKESHVKGLKKEDSDAWFDKIISVLAGGNELDSTSSLSP-FKKIICPQCHWKSNCYRL 235

Query: 232 AGVPFQYVCSNCGSKL--------ATKPSNTAAPASSKSE 263
           A  P  ++C +C  K+        A +    A P+ S+ E
Sbjct: 236 ASKPIIFICPHCNHKIDEVKEREDAIEAKQPAQPSQSEKE 275


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.314    0.129    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,582,237
Number of Sequences: 60738
Number of extensions: 470147
Number of successful extensions: 1802
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1798
Number of HSP's gapped (non-prelim): 1
length of query: 277
length of database: 30,389,216
effective HSP length: 105
effective length of query: 172
effective length of database: 24,011,726
effective search space: 4130016872
effective search space used: 4130016872
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)