ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactII1165   suspect: LH   U     KOG3368  Intracellular trafficking, secretion, and vesicular transport  Transport protein particle (TRAPP) complex subunit

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactII1165 412826  413131 102  
         (102 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YML077w [U] KOG3368 Transport protein particle (TRAPP) complex s...    77   3e-15

>YML077w [U] KOG3368 Transport protein particle (TRAPP) complex subunit
          Length = 159

 Score = 77.4 bits (189), Expect = 3e-15
 Identities = 41/107 (38%), Positives = 66/107 (61%), Gaps = 7/107 (6%)

Query: 1   MVHSLKAMSTKIAPG---NTLRTLTTGKYRIHALFTASNLWIVIFSDLTHHELHERLDKI 57
           M+ SL++++ K++ G   N +R+++TGKYR+H   TAS LW V+ SD       + L  I
Sbjct: 47  MIFSLRSITQKLSKGSVKNDIRSISTGKYRVHTYCTASGLWFVLLSDFKQQSYTQVLQYI 106

Query: 58  Y-ELYLKYVVHNMLKPIDLRESEN---AKESDKITSPSFIKAVDQVL 100
           Y  +Y+KYV +N+L P D  E+EN    + + KIT+ +FI  ++  L
Sbjct: 107 YSHIYVKYVSNNLLSPYDFAENENEMRGQGTRKITNRNFISVLESFL 153


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.321    0.135    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,931,489
Number of Sequences: 60738
Number of extensions: 224621
Number of successful extensions: 657
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 656
Number of HSP's gapped (non-prelim): 1
length of query: 102
length of database: 30,389,216
effective HSP length: 78
effective length of query: 24
effective length of database: 25,651,652
effective search space: 615639648
effective search space used: 615639648
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)