ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII1307 good D KOG0987 Cell cycle control, cell division, chromosome partitioning DNA helicase PIF1/RRM3
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII1307 466334 463719 -872
(872 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YML061c [D] KOG0987 DNA helicase PIF1/RRM3 614 e-175
SPBC887.14c [D] KOG0987 DNA helicase PIF1/RRM3 420 e-117
YHR031c [D] KOG0987 DNA helicase PIF1/RRM3 343 9e-94
7295800 [D] KOG0987 DNA helicase PIF1/RRM3 225 2e-58
Hs15300290 [D] KOG0987 DNA helicase PIF1/RRM3 146 2e-34
CE26962 [D] KOG0987 DNA helicase PIF1/RRM3 125 4e-28
At3g43350 [D] KOG0987 DNA helicase PIF1/RRM3 79 4e-14
CE26057_1 [D] KOG0987 DNA helicase PIF1/RRM3 72 3e-12
CE21950 [D] KOG0987 DNA helicase PIF1/RRM3 65 6e-10
CE17043 [D] KOG0987 DNA helicase PIF1/RRM3 64 8e-10
CE15285 [D] KOG0987 DNA helicase PIF1/RRM3 62 4e-09
CE15283B [D] KOG0987 DNA helicase PIF1/RRM3 62 4e-09
CE15283A [D] KOG0987 DNA helicase PIF1/RRM3 62 4e-09
CE20911 [D] KOG0987 DNA helicase PIF1/RRM3 62 5e-09
At1g35940 [D] KOG0987 DNA helicase PIF1/RRM3 60 1e-08
At3g31980 [D] KOG0987 DNA helicase PIF1/RRM3 59 4e-08
At2g05640 [D] KOG0987 DNA helicase PIF1/RRM3 59 4e-08
CE24155 [D] KOG0987 DNA helicase PIF1/RRM3 58 6e-08
CE05256 [D] KOG0987 DNA helicase PIF1/RRM3 58 6e-08
At3g30420 [D] KOG0987 DNA helicase PIF1/RRM3 58 7e-08
At3g13250 [D] KOG0987 DNA helicase PIF1/RRM3 58 7e-08
At2g07620 [D] KOG0987 DNA helicase PIF1/RRM3 58 7e-08
At3g42100 [D] KOG0987 DNA helicase PIF1/RRM3 57 9e-08
At5g34960_2 [D] KOG0987 DNA helicase PIF1/RRM3 57 9e-08
At1g54430 [D] KOG0987 DNA helicase PIF1/RRM3 57 1e-07
At2g14470 [D] KOG0987 DNA helicase PIF1/RRM3 57 2e-07
At3g30560 [D] KOG0987 DNA helicase PIF1/RRM3 55 4e-07
At1g52960 [D] KOG0987 DNA helicase PIF1/RRM3 55 4e-07
At5g37110 [D] KOG0987 DNA helicase PIF1/RRM3 55 5e-07
At2g05080 [D] KOG0987 DNA helicase PIF1/RRM3 54 8e-07
CE26961 [D] KOG0987 DNA helicase PIF1/RRM3 54 1e-06
At5g32630 [D] KOG0987 DNA helicase PIF1/RRM3 54 1e-06
At1g64410_2 [D] KOG0987 DNA helicase PIF1/RRM3 51 7e-06
>YML061c [D] KOG0987 DNA helicase PIF1/RRM3
Length = 859
Score = 614 bits (1584), Expect = e-175
Identities = 342/681 (50%), Positives = 456/681 (66%), Gaps = 22/681 (3%)
Query: 193 NEELDQTQTLDKEITPDENPKPRHSHHRQLTFLTQQQSMNEYISNDSRESSVTPEVARKK 252
N + Q ++L+ +EN K + ++ LTQ+ S E + ND +S++ P K
Sbjct: 176 NNSISQERSLEMI---NENEKKKMQFGEKIAVLTQRPSFTE-LQNDQDDSNLNPHNGVKV 231
Query: 253 VRAITLSEEQEHVIELARRKLNIFYTGSAGTGKSVLLRELIKTLKTMYGTSGAVAVTAST 312
I LS+EQE +I+LA NIFYTGSAGTGKS+LLRE+IK LK +YG VAVTAST
Sbjct: 232 KIPICLSKEQESIIKLAENGHNIFYTGSAGTGKSILLREMIKVLKGIYGREN-VAVTAST 290
Query: 313 GLAACNIGGITLHSFAGIGLGVGDEAMLLKKVRRSAKHRERWKNIKALVIDEISMIDGKL 372
GLAACNIGGIT+HSFAGIGLG GD L KKVRRS KH RW+NI ALV+DEISM+D +L
Sbjct: 291 GLAACNIGGITIHSFAGIGLGKGDADKLYKKVRRSRKHLRRWENIGALVVDEISMLDAEL 350
Query: 373 LDKLDGIAKTLRRSSKPFGGIQIILCGDFFQLPPVTKG-DQQINFAFQSYSWRTAIDATI 431
LDKLD IA+ +R++ +PFGGIQ+I CGDFFQLPPV+K ++ FAF+S +W+ + TI
Sbjct: 351 LDKLDFIARKIRKNHQPFGGIQLIFCGDFFQLPPVSKDPNRPTKFAFESKAWKEGVKMTI 410
Query: 432 ILQKVFRQQGDHRFVEMLNEMRMGVISDRTLKEFAELSRPLPNDEIVPAELFSTRAEVDN 491
+LQKVFRQ+GD +F++MLN MR+G I D T +EF +LSRPLP+DEI+PAEL+STR EV+
Sbjct: 411 MLQKVFRQRGDVKFIDMLNRMRLGNIDDETEREFKKLSRPLPDDEIIPAELYSTRMEVER 470
Query: 492 ANYSRLKTLPGETMTYEASDGGVIDNVELRRKLLDNFLAPKKLELKVGAQVMNIKNIDAT 551
AN SRL LPG+ + A DGG +++ EL+ +LL NFLAPK+L LKVGAQVM +KN+DAT
Sbjct: 471 ANNSRLSKLPGQVHIFNAIDGGALEDEELKERLLQNFLAPKELHLKVGAQVMMVKNLDAT 530
Query: 552 LVNGSLGKVLAFLDSDTFAFLKGPFNSNKILNDEDVEKLTENPDXXXXXXXXXXLTAKQS 611
LVNGSLGKV+ F+D +T+ F ++ + E +E ENP ++S
Sbjct: 531 LVNGSLGKVIEFMDPETY-FCYEALTNDPSMPPEKLETWAENPSKLKAAMEREQSDGEES 589
Query: 612 KQKKKEMELEKNFMK-DQQERIQIESPLSETIFDFFITETDSMSSRIKANVERKKEIVRN 670
++ +++ F K D E + SPL ++FD F+ + + N++RK+++++
Sbjct: 590 AVASRKSSVKEGFAKSDIGEPV---SPLDSSVFD-FMKRVKTDDEVVLENIKRKEQLMQT 645
Query: 671 LHKKARG-AKLPLVQFFTPSGDARIVLVRPETWAMEDEKDVPLVSRTQLPLILAWSLSIH 729
+H+ + G +LPLV+F R+VLV PE WA+EDE + PLVSR QLPL+LAWSLSIH
Sbjct: 646 IHQNSAGKRRLPLVRFKASDMSTRMVLVEPEDWAIEDENEKPLVSRVQLPLMLAWSLSIH 705
Query: 730 KSQGQTLSKVKVDLKRVFEKGQAYVALSRAVSRTGLQVLNFDRTKVKAHDIVVNFYESLS 789
KSQGQTL KVKVDL+RVFEKGQAYVALSRAVSR GLQVLNFDRT++KAH V++FY +LS
Sbjct: 706 KSQGQTLPKVKVDLRRVFEKGQAYVALSRAVSREGLQVLNFDRTRIKAHQKVIDFYLTLS 765
Query: 790 SAKSVMNELN-----QKKTTDHTKATDSKTVSTASESESRP----PQKRNLETMLLNRMR 840
SA+S +L +K+ D+ K S + + P Q N +L R
Sbjct: 766 SAESAYKQLEADEQVKKRKLDYAPGPKYKAKSKSKSNSPAPISATTQSNNGIAAMLQRHS 825
Query: 841 QVKKKSWNEVPTNTVVDLAYD 861
+ + + E +N V L D
Sbjct: 826 RKRFQLKKESNSNQVHSLVSD 846
>SPBC887.14c [D] KOG0987 DNA helicase PIF1/RRM3
Length = 805
Score = 420 bits (1080), Expect = e-117
Identities = 241/554 (43%), Positives = 344/554 (61%), Gaps = 67/554 (12%)
Query: 245 TPEVARKKVRAITLSEEQEHVIELA-RRKLNIFYTGSAGTGKSVLLRELIKTLKTMYGT- 302
T + +K V +I LS+EQ+ ++++ ++ +IF+TGSAGTGKSVLLR++I+ LK+ Y
Sbjct: 297 TSDSRKKSVPSIFLSDEQKRILDMVVEQQHSIFFTGSAGTGKSVLLRKIIEVLKSKYRKQ 356
Query: 303 SGAVAVTASTGLAACNIGGITLHSFAGIGLGVGDEAMLLKKVRRSAKHRERWKNIKALVI 362
S VAVTASTGLAACNIGG+TLHSFAG+GL +L+ K++++ K RW + L+I
Sbjct: 357 SDRVAVTASTGLAACNIGGVTLHSFAGVGLARESVDLLVSKIKKNKKCVNRWLRTRVLII 416
Query: 363 DEISMIDGKLLDKLDGIAKTLRRSSKPFGGIQIILCGDFFQLPPVTKGDQQINFAFQSYS 422
DE+SM+D +L+DKL+ +A+ +R+ SKPFGGIQ++L GDFFQLPPV + ++ F F+S +
Sbjct: 417 DEVSMVDAELMDKLEEVARVIRKDSKPFGGIQLVLTGDFFQLPPVPENGKESKFCFESQT 476
Query: 423 WRTAIDATIILQKVFRQQGDHRFVEMLNEMRMGVISDRTLKEFAELSRPLP-NDEIVPAE 481
W++A+D TI L VFRQ+ D FV+MLNE+R+G +SD ++++F L+R + D ++P E
Sbjct: 477 WKSALDFTIGLTHVFRQK-DEEFVKMLNELRLGKLSDESVRKFKVLNRTIEYEDGLLPTE 535
Query: 482 LFSTRAEVDNANYSRLKTLPGETMTYEASDGGVIDNVELRRKLLDNFLAPKKLELKVGAQ 541
LF TR EV+ +N R++ + +T+ A D G + + E R +LL +AP L LKV AQ
Sbjct: 536 LFPTRYEVERSNDMRMQQINQNPVTFTAIDSGTVRDKEFRDRLLQGCMAPATLVLKVNAQ 595
Query: 542 VMNIKNIDATLVNGSLGKVLAFLDSDTFAFLKGPFNSNKILNDEDVEKLTENPDXXXXXX 601
VM IKNID LVNGSLGKV+ F+D +T+
Sbjct: 596 VMLIKNIDDQLVNGSLGKVIGFIDDETY-------------------------------- 623
Query: 602 XXXXLTAKQSKQKKKEMELEKNFMKDQQERIQIESPLSETIFDFFITETDSMSSRIKANV 661
Q ++K EM+ F D + + P +V
Sbjct: 624 --------QMEKKDAEMQGRNAFEYDSLDISPFDLP----------------------DV 653
Query: 662 ERKKEIVRNLHKKARGA-KLPLVQFFTPSGDARIVLVRPETWAMEDEKDVPLVSRTQLPL 720
++KK + + K + A K PLV+F P+G R ++V+ ETW +E SR+Q+PL
Sbjct: 654 KQKKYKLIAMRKASSTAIKWPLVRFKLPNGGERTIVVQRETWNIELPNGEVQASRSQIPL 713
Query: 721 ILAWSLSIHKSQGQTLSKVKVDLKRVFEKGQAYVALSRAVSRTGLQVLNFDRTKVKAHDI 780
ILA+++SIHK+QGQTL +VKVDL RVFEKGQAYVALSRA ++ GLQVLNF KV AH
Sbjct: 714 ILAYAISIHKAQGQTLDRVKVDLGRVFEKGQAYVALSRATTQEGLQVLNFSPAKVMAHPK 773
Query: 781 VVNFYESLSSAKSV 794
VV FY+ L+S +
Sbjct: 774 VVQFYKQLASVNGL 787
>YHR031c [D] KOG0987 DNA helicase PIF1/RRM3
Length = 723
Score = 343 bits (879), Expect = 9e-94
Identities = 216/544 (39%), Positives = 320/544 (58%), Gaps = 57/544 (10%)
Query: 256 ITLSEEQEHVIEL-ARRKLNIFYTGSAGTGKSVLLRELIKTLKTMYGTSGAVAVTASTGL 314
+ L+ EQE V+ L +++ N+FYTGSAGTGKSV+L+ +I+ L ++YG ++A+TASTGL
Sbjct: 230 VVLTMEQERVVNLIVKKRTNVFYTGSAGTGKSVILQTIIRQLSSLYGKE-SIAITASTGL 288
Query: 315 AACNIGGITLHSFAGIGLGVGDEAMLLKKVRRSAKHRERWKNIKALVIDEISMIDGKLLD 374
AA IGG TLH ++GIG+G L+KK++ W+ K L+IDEISM+DG LLD
Sbjct: 289 AAVTIGGSTLHKWSGIGIGNKTIDQLVKKIQSQKDLLAAWRYTKVLIIDEISMVDGNLLD 348
Query: 375 KLDGIAKTLRRSSKPFGGIQIILCGDFFQLPPVTKGDQQ--INFAFQSYSWRTAIDATII 432
KL+ IA+ +R++ PFGGIQ++L GDFFQLPPV K D+ + F F+S W+ I TI+
Sbjct: 349 KLEQIARRIRKNDDPFGGIQLVLTGDFFQLPPVAKKDEHNVVKFCFESEMWKRCIQKTIL 408
Query: 433 LQKVFRQQGDHRFVEMLNEMRMGVISDRTLKEFAELSRPLP-NDEIVPAELFSTRAEVDN 491
L KVFRQQ D++ +++LN +R G ++ K L+R + D I P EL++TR EV+
Sbjct: 409 LTKVFRQQ-DNKLIDILNAIRYGELTVDIAKTIRNLNRDIDYADGIAPTELYATRREVEL 467
Query: 492 ANYSRLKTLPGETMTYEASDGGVIDNVELRRKLLDNFLAPKK-LELKVGAQVMNIKN-ID 549
+N +L++LPG+ ++A D E + +LD+ L +K + LK AQVM +KN D
Sbjct: 468 SNVKKLQSLPGDLYEFKAVDNA----PERYQAILDSSLMVEKVVALKEDAQVMMLKNKPD 523
Query: 550 ATLVNGSLGKVLAFLDSDTFAFLKGPFNSNKILNDEDVEKLTENPDXXXXXXXXXXLTAK 609
LVNGSLGKVL F+ +K + KI++DE V
Sbjct: 524 VELVNGSLGKVLFFVTESLVVKMKEIY---KIVDDEVV---------------------- 558
Query: 610 QSKQKKKEMELEKNFMKDQQERIQIESPLSETIFDFFITETDSMSSRIKANVERKKEIVR 669
+M L I +PL + +F +++R A +ER K ++
Sbjct: 559 ------MDMRLVSRV---------IGNPLLKESKEF----RQDLNARPLARLERLKILIN 599
Query: 670 NLHK-KARGAKLPLVQFFTPSGDARIVLVRPETWAMEDEKDVPLVSRTQLPLILAWSLSI 728
K K P V++ L+ PE + ++ ++ + RTQ+PL+L W+LSI
Sbjct: 600 YAVKISPHKEKFPYVRWTVGKNKYIHELMVPERFPIDIPRENVGLERTQIPLMLCWALSI 659
Query: 729 HKSQGQTLSKVKVDLKRVFEKGQAYVALSRAVSRTGLQVLNFDRTKVKAHDIVVNFYESL 788
HK+QGQT+ ++KVDL+R+FE GQ YVALSRAV+ LQVLNFD K++ ++ V +FY+ L
Sbjct: 660 HKAQGQTIQRLKVDLRRIFEAGQVYVALSRAVTMDTLQVLNFDPGKIRTNERVKDFYKRL 719
Query: 789 SSAK 792
+ K
Sbjct: 720 ETLK 723
>7295800 [D] KOG0987 DNA helicase PIF1/RRM3
Length = 663
Score = 225 bits (574), Expect = 2e-58
Identities = 143/361 (39%), Positives = 205/361 (56%), Gaps = 29/361 (8%)
Query: 212 PKPRHSHHRQLTFLTQQQSMNEYISNDSRESSVTPEVARKKVRAITLSEEQEHVIELARR 271
P P+ + R+ L +++ + +S T E R LSEEQ V+
Sbjct: 166 PSPQGAKKRRFEELKEEKERGTMPAAKKLYASTTDESLR-------LSEEQMEVLRACTS 218
Query: 272 KLNIFYTGSAGTGKSVLLRELIKTLKTMYGTSGAVAVTASTGLAACNIGGITLHSFAGIG 331
++F+TGSAGTGKS LLR +I L G VA TASTG+AAC IGG TLH+FAGIG
Sbjct: 219 GKSVFFTGSAGTGKSFLLRRIISALPP----DGTVA-TASTGVAACLIGGTTLHAFAGIG 273
Query: 332 LGVGDEAMLLKKVRRSAKHRERWKNIKALVIDEISMIDGKLLDKLDGIAKTLRRSSKPFG 391
G L+ R A + + W+ K L+IDEISM+DG+ +K++ +A+ +RR+ +PFG
Sbjct: 274 GGDATMQRCLELASRPA-NAQTWRKCKRLIIDEISMVDGQFFEKIEAVARHIRRNDRPFG 332
Query: 392 GIQIILCGDFFQLPPVTKGD--------QQINFAFQSYSWRTAIDATIILQKVFRQQGDH 443
GIQ+ILCGDF QLPPV KGD Q F FQS +W T I L++V R Q D
Sbjct: 333 GIQLILCGDFLQLPPVIKGDFGAAPTATPQQRFCFQSSAWETCIQCVYELKQVHR-QSDP 391
Query: 444 RFVEMLNEMRMGVISDRTLKEFAELSR-PLPNDEIVPAELFSTRAEVDNANYSRLKTLPG 502
FV++LN +R+G ++D A S+ + + I+ +L S + ++ N S+L+ L G
Sbjct: 392 EFVKILNHLRIGHVNDSITSRLAATSKQKIEGNGILATQLCSHTNDANSINESKLENLDG 451
Query: 503 ETMTYEASDGGVIDNVELRRKLLDNFLAPKKLELKVGAQVMNIKNIDAT--LVNGSLGKV 560
+ + ++A D + + R L AP +L LKV AQVM +KNI+ + LVNG+ G V
Sbjct: 452 DKILFKADD----SDASMTRTLDQQIQAPSQLYLKVNAQVMLLKNINISNGLVNGARGVV 507
Query: 561 L 561
+
Sbjct: 508 V 508
Score = 80.5 bits (197), Expect = 1e-14
Identities = 40/74 (54%), Positives = 55/74 (74%)
Query: 713 VSRTQLPLILAWSLSIHKSQGQTLSKVKVDLKRVFEKGQAYVALSRAVSRTGLQVLNFDR 772
++R Q+PL LAW+ SIHKSQG TL V++ L +VFE GQAYVALSRA S +++L+FD
Sbjct: 542 ITRRQVPLKLAWAFSIHKSQGLTLDCVEMSLSKVFEAGQAYVALSRAKSLQSIRILDFDA 601
Query: 773 TKVKAHDIVVNFYE 786
+V A+ V+ FY+
Sbjct: 602 KQVWANPHVLQFYK 615
>Hs15300290 [D] KOG0987 DNA helicase PIF1/RRM3
Length = 332
Score = 146 bits (368), Expect = 2e-34
Identities = 84/200 (42%), Positives = 119/200 (59%), Gaps = 8/200 (4%)
Query: 367 MIDGKLLDKLDGIAKTLRRSSKPFGGIQIILCGDFFQLPPVTKGDQQINFAFQSYSWRTA 426
M++ L DKL+ +A+ +R+ +KPFGGIQ+I+CGDF QLPPVTKG Q F FQS SW+
Sbjct: 1 MVEADLFDKLEAVARAVRQQNKPFGGIQLIICGDFLQLPPVTKGSQPPRFCFQSKSWKRC 60
Query: 427 IDATIILQKVFRQQGDHRFVEMLNEMRMGVISDRTLKEF-AELSRPLPNDEIVPAELFST 485
+ T+ L KV+R Q D F+ +L +R+G SD ++ A S + D IV L +
Sbjct: 61 VPVTLELTKVWR-QADQTFISLLQAVRLGRCSDEVTRQLQATASHKVGRDGIVATRLCTH 119
Query: 486 RAEVDNANYSRLKTLPGETMTYEASDGGVIDNVELRRKLLDNFLAPKKLELKVGAQVMNI 545
+ +V N RL+ LPG+ +EA D N EL L + L+LK+GAQVM +
Sbjct: 120 QDDVALTNERRLQELPGKVHRFEAMD----SNPELASTLDAQCPVSQLLQLKLGAQVMLV 175
Query: 546 KNIDAT--LVNGSLGKVLAF 563
KN+ + LVNG+ G V+ F
Sbjct: 176 KNLSVSRGLVNGARGVVVGF 195
Score = 92.8 bits (229), Expect = 2e-18
Identities = 58/142 (40%), Positives = 83/142 (57%), Gaps = 9/142 (6%)
Query: 674 KARGAKLPLVQFFTPSGDARIVLVRPETWAMEDEKDVPLVSRTQLPLILAWSLSIHKSQG 733
+A G LP V+F + ++ + W ++ L+SR QLPL LAW++SIHKSQG
Sbjct: 196 EAEGRGLPQVRFLCGVTE----VIHADRWTVQATGG-QLLSRQQLPLQLAWAMSIHKSQG 250
Query: 734 QTLSKVKVDLKRVFEKGQAYVALSRAVSRTGLQVLNFDRTKVKAHDIVVNFYESLSSAKS 793
TL V++ L RVF GQAYVALSRA S GL+VL+FD V+ V++FY +L +S
Sbjct: 251 MTLDCVEISLGRVFASGQAYVALSRARSLQGLRVLDFDPMAVRCDPRVLHFYATLRRGRS 310
Query: 794 VMNELNQKKTTDHTKATDSKTV 815
L+ + D A+D + +
Sbjct: 311 ----LSLESPDDDEAASDQENM 328
>CE26962 [D] KOG0987 DNA helicase PIF1/RRM3
Length = 723
Score = 125 bits (313), Expect = 4e-28
Identities = 78/190 (41%), Positives = 112/190 (58%), Gaps = 10/190 (5%)
Query: 379 IAKTLRRSSKPFGGIQIILCGDFFQLPPVTKGDQQINFAFQSYSWRTAIDATIILQKVFR 438
+A+T+R + KPFGGIQ+I+ GDFFQLPPV+K D+ + F F+S +W I TI+L+ V +
Sbjct: 498 VARTVRNNDKPFGGIQLIITGDFFQLPPVSK-DEPV-FCFESEAWSRCIQKTIVLKNV-K 554
Query: 439 QQGDHRFVEMLNEMRMGVISDRTLKEFAELSRPLPNDEIVPAELFSTRAEVDNANYSRLK 498
+Q D+ FV++LN +R+G ++ E S+ ++P +L + + D N S ++
Sbjct: 555 RQNDNVFVKILNNVRVGKCDFKSADILKESSKNQFPSSVIPTKLCTHSDDADRINSSSIE 614
Query: 499 TLPGETMTYEASDGGVIDNVELRRKLLDNFLAPKKLELKVGAQVMNIKNIDAT--LVNGS 556
T G+ T+ A D D R LA KKL LKVGAQVM IKNID L NGS
Sbjct: 615 TTQGDAKTFHAYDDESFDTHAKART-----LAQKKLVLKVGAQVMLIKNIDVIKGLCNGS 669
Query: 557 LGKVLAFLDS 566
G V F ++
Sbjct: 670 RGFVEKFSEN 679
Score = 93.2 bits (230), Expect = 2e-18
Identities = 53/126 (42%), Positives = 76/126 (60%), Gaps = 6/126 (4%)
Query: 256 ITLSEEQEHVIE-LARRKLNIFYTGSAGTGKSVLLRELIKTLKTMYGTSGAVAVTASTGL 314
I LS+EQ+ V+ + + ++F+TGSAGTGKSV+LR +I+ L +G +TA+TG+
Sbjct: 265 IQLSDEQKSVVRCVINSRTSVFFTGSAGTGKSVILRRIIEMLP-----AGNTYITAATGV 319
Query: 315 AACNIGGITLHSFAGIGLGVGDEAMLLKKVRRSAKHRERWKNIKALVIDEISMIDGKLLD 374
AA IGGITLH+F G LK+V R +WK L+IDEISMID +
Sbjct: 320 AASQIGGITLHAFCGFRYENSTPEQCLKQVLRQNHMVRQWKQCSHLIIDEISMIDRDFFE 379
Query: 375 KLDGIA 380
L+ ++
Sbjct: 380 ALEYVS 385
>At3g43350 [D] KOG0987 DNA helicase PIF1/RRM3
Length = 830
Score = 78.6 bits (192), Expect = 4e-14
Identities = 131/562 (23%), Positives = 208/562 (36%), Gaps = 126/562 (22%)
Query: 276 FYTGSAGTGKSVLLRELIKTLKTMYGTSGAVAVT-ASTGLAACNI-GGITLHSFAGIGLG 333
F G GTGK+ L K L + G +++ AS+G+AA + GG T HS I +
Sbjct: 200 FVYGFGGTGKTFLW----KLLSAAVRSKGDISLNVASSGIAALRLDGGRTAHSRFDIPIN 255
Query: 334 VGDEAMLLKKVRRSAKHRERWKNIKALVIDEISMIDGKLLDKLDGIAKTLRRS--SKPFG 391
+ + + R + E K K ++ DE M+ + LD K + + KP G
Sbjct: 256 PNESSTC--NISRGSDLGELVKEAKLIIWDEAPMMSKHCFESLDRTLKDIVNNPGDKPLG 313
Query: 392 GIQIILCGDFFQLPPVTKGDQQINFAF----QSYSWRTAIDATIILQKVFRQQGDHRFVE 447
G I+ GDF Q+ PV G + F SY W + KV + R +
Sbjct: 314 GKVIVFGGDFRQVLPVINGAGREEIVFAALNSSYIWEHS--------KVLELTKNMRLLA 365
Query: 448 MLNEMRMGVISD--RTLKEFAELSRPLPNDEI----VPAE-------------------- 481
++E I D + + + + PND I +P E
Sbjct: 366 DISEHEKRDIEDFSKWILDVGDGKISQPNDGIALIDIPEEFLINGDNDPVESIIEAVYGN 425
Query: 482 ---------------------LFSTRAEVDNANYSRLKTLPGETMTYEASDG------GV 514
L T +V++ N ++ L GE Y +SD
Sbjct: 426 TFMEEKDPKKTDYPQYQGRAILCPTNEDVNSINEHMMRMLDGEERIYLSSDSIDPADISS 485
Query: 515 IDNVELRRKLLDNF----LAPKKLELKVGAQVMNIKNIDATLVNGSLGKVLAFLDSDTFA 570
+N L+N L L LKVG VM ++N+D
Sbjct: 486 ANNAAYLADFLNNVRVYGLPNHCLRLKVGCPVMLLRNMDPN------------------- 526
Query: 571 FLKGPFNSNKILNDEDVEKLTENPDXXXXXXXXXXLTAKQSKQKKKEME-----LEKNFM 625
KG N ++ ++T+ D +K + + +E L +
Sbjct: 527 --KGLCNGTRL-------QVTQMTDTIIQARFITAFAMTINKSQGQTLESVGLYLPRPVF 577
Query: 626 KDQQERIQIESPLSETIFDFFITETDSMSSRIKANVERKKEIVRNLHKKARGAKLPLVQ- 684
Q + I S+TI + N++ K + + ++Q
Sbjct: 578 SHGQLYVAISRVTSKTI---------GCPVMLLRNMDPNKGLCNGTRLQVTQMADTVIQA 628
Query: 685 -FFTPSGDARIVLVRPETWAMEDEKDVPL-VSRTQLPLILAWSLSIHKSQGQTLSKVKVD 742
F T + +IVL+ P + +P + R Q L +A++++I+KSQGQTL V +
Sbjct: 629 RFITGNRVGKIVLI-PRMLITPSDTRLPFKMRRKQFALSVAFAMTINKSQGQTLESVGLY 687
Query: 743 LKR-VFEKGQAYVALSRAVSRT 763
L R VF GQ YVA+SR S+T
Sbjct: 688 LPRPVFSHGQLYVAISRVTSKT 709
Score = 50.8 bits (120), Expect = 9e-06
Identities = 33/82 (40%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 684 QFFTPSGDARIVLVRPETWAMEDEKDVPLVSRTQLPLILAWSLSIHKSQGQTLSKVKVDL 743
+F T + +IVL+ D + + R Q L +A++++I+KSQGQTL V + L
Sbjct: 745 RFITGNRVGKIVLIPRMLITPLDTRLPFKMRRKQFALSVAFAMTINKSQGQTLESVGLYL 804
Query: 744 KR-VFEKGQAYVALSRAVSRTG 764
R VF GQ YVA+SR S+TG
Sbjct: 805 PRPVFSHGQLYVAISRVTSKTG 826
>CE26057_1 [D] KOG0987 DNA helicase PIF1/RRM3
Length = 758
Score = 72.4 bits (176), Expect = 3e-12
Identities = 95/372 (25%), Positives = 151/372 (40%), Gaps = 50/372 (13%)
Query: 229 QSMNEYISNDSRE-------SSVTPEVARKKVRAI-TLSEEQEHVIELARRKLN------ 274
++ N+Y+ S +S + A + VR TL+ +Q++V E L+
Sbjct: 334 KAFNDYVPEPSMHPTDIYLNTSDPSQCAAEGVRLFQTLNSDQKYVFERIVGALHDPTLPR 393
Query: 275 -IFYTGSAGTGKSVLLRELIKTLKTMYGTSGAVAVTASTGLAACNI-GGITLHSFAGIGL 332
F G G+GK+ L I + G + A TA TG+AA + GG T+ S + +
Sbjct: 394 LFFLDGPGGSGKTYLY---IALYNMIIGENKMAACTAWTGIAAHLLPGGRTMVSLLKLNI 450
Query: 333 GVGDEAMLLKKVRRSAKHRERWKNIKALVIDEISMIDGKLLDKLDGIAKTLRRSSKPFGG 392
E+ L RR K N + DE SMI L+ D + + + + +PFGG
Sbjct: 451 HDRCESSLH---RRQLKDARELANTDVFICDEASMIPKTALNTFDSLLRDITQVDQPFGG 507
Query: 393 IQIILCGDFFQ-LPPVTKGDQ--QINFAFQSYSWRTAIDATIILQKVFRQQGDHRFVEML 449
+IL GDF Q LP V KG + Q++ +S + + + D ++ L
Sbjct: 508 KIVILGGDFRQILPIVEKGSRADQVDACIKSSPLWNQFETLRLHSNMRVTTNDTEWMNFL 567
Query: 450 NEMRMGVISDR---------------TLKEFAELSRPLPNDEIVPAELFSTRAEVDNANY 494
+ G ++D K F ++ P +D L +V N
Sbjct: 568 LGVGDGSLNDSESKVQIPFSLCDGNIVEKVFGDVIDPSTSDPCENVILTPKNVDVTLLNE 627
Query: 495 SRLKTLPGETMTYEASDGGVIDN--------VELRRKLLDNFLAPKKLELKVGAQVMNIK 546
GE Y + D V D+ E K+ + L P L+LK G+ VM ++
Sbjct: 628 DVHSRGIGEERIYLSRDEIVTDDPADHMHYPTEFLNKMTPSTLPPHVLKLKKGSVVMLLR 687
Query: 547 NIDAT--LVNGS 556
N+D + L NGS
Sbjct: 688 NLDVSGGLCNGS 699
>CE21950 [D] KOG0987 DNA helicase PIF1/RRM3
Length = 1365
Score = 64.7 bits (156), Expect = 6e-10
Identities = 83/337 (24%), Positives = 143/337 (41%), Gaps = 43/337 (12%)
Query: 257 TLSEEQEHVIELARRKLN------IFYT-GSAGTGKSVLLRELIKTLKTMYGTSGAVAVT 309
TL+++Q+ + L+ +FY G G+GK+ L I G VA T
Sbjct: 921 TLNDQQKRAADQILAALDDASLPRLFYLDGPGGSGKTYLY---ITLYNICVGRGLKVACT 977
Query: 310 ASTGLAACNIGGITLHSFAGIGLGVGDEAMLLKKVRRSAKHRERWKNIKALVIDEISMID 369
A TG+AA N+ + S + L + ++ R+ + +E +N + DE SM+
Sbjct: 978 AWTGIAA-NLLPLGRTSASLFKLDIRNQCKSSLHQRQLKEAQELAEN-DVFIWDEASMVP 1035
Query: 370 GKLLDKLDGIAKTLRRSSKPFGGIQIILCGDFFQLPPV----TKGDQQINFAFQSYSWRT 425
LD +D + + L + +PFGG +IL GDF Q+ PV ++ DQ +S W T
Sbjct: 1036 KTALDTVDVLLRDLTKIDQPFGGKILILGGDFRQILPVVERSSRADQVDACIKRSPLW-T 1094
Query: 426 AIDATIILQKVFRQQGDHRFVEMLNE--------------MRMGVISDRTLKE--FAELS 469
++ + GD +++ L + + V+ D + E F +
Sbjct: 1095 EFQILHLISNMRVTSGDSDWIQFLLNVGDGSANDSDSKVTLPLSVMCDHNIVEEVFGAVI 1154
Query: 470 RPLPNDEIVPAELFSTRAEVDNANYSRLKTLPGETMTYEASDGGVIDN--------VELR 521
P +D L +V N + GE Y + D ++++ E
Sbjct: 1155 DPTTSDPCDNVILTPKNVDVAQLNDDVHNRMVGEERIYLSRDEVIVEHQADTMHYPTEFL 1214
Query: 522 RKLLDNFLAPKKLELKVGAQVMNIKNID--ATLVNGS 556
K+ + L P L+LK G+ ++ ++N+D A L NGS
Sbjct: 1215 NKMSPSSLPPHILKLKKGSVIILLRNLDVSAGLCNGS 1251
>CE17043 [D] KOG0987 DNA helicase PIF1/RRM3
Length = 1360
Score = 64.3 bits (155), Expect = 8e-10
Identities = 83/337 (24%), Positives = 141/337 (41%), Gaps = 43/337 (12%)
Query: 257 TLSEEQEHVIELARRKLN------IFYT-GSAGTGKSVLLRELIKTLKTMYGTSGAVAVT 309
TL+++Q+ + L+ +FY G G+GK+ L I G VA T
Sbjct: 916 TLNDQQKRAADQILAALDDASLPRLFYLDGPGGSGKTYLY---ITLYNICVGRGLKVACT 972
Query: 310 ASTGLAACNIGGITLHSFAGIGLGVGDEAMLLKKVRRSAKHRERWKNIKALVIDEISMID 369
A TG+AA N+ + S + L + ++ R+ + +E +N + DE SM+
Sbjct: 973 AWTGIAA-NLLPLGRTSASLFKLDIRNQCKSSLHQRQLKEAQELAEN-DVFIWDEASMVP 1030
Query: 370 GKLLDKLDGIAKTLRRSSKPFGGIQIILCGDFFQLPPV----TKGDQQINFAFQSYSWRT 425
LD +D + + L + +PFGG +IL GDF Q+ PV ++ DQ +S W T
Sbjct: 1031 KTALDTVDVLLRDLTKIDQPFGGKILILGGDFRQILPVVERSSRADQVDACIKRSPLW-T 1089
Query: 426 AIDATIILQKVFRQQGDHRFVEMLNEMRMGVISDRTLK----------------EFAELS 469
++ + GD +++ L + G +D K F +
Sbjct: 1090 EFQILHLISNMRVTSGDSDWIQFLLNVGDGSANDSDSKVTLPLSVMCDHKIVEEVFGAVI 1149
Query: 470 RPLPNDEIVPAELFSTRAEVDNANYSRLKTLPGETMTYEASDGGVIDN--------VELR 521
P +D L +V N + GE Y + D ++++ E
Sbjct: 1150 DPTTSDPCDNVILTPKNVDVAQLNDDVHNRMVGEERIYLSRDEVIVEHQADTMHYPTEFL 1209
Query: 522 RKLLDNFLAPKKLELKVGAQVMNIKNID--ATLVNGS 556
K+ + L P L+LK G+ ++ ++N+D A L NGS
Sbjct: 1210 NKMSPSSLPPHILKLKKGSVIILLRNLDVSAGLCNGS 1246
>CE15285 [D] KOG0987 DNA helicase PIF1/RRM3
Length = 1192
Score = 62.0 bits (149), Expect = 4e-09
Identities = 82/337 (24%), Positives = 142/337 (41%), Gaps = 43/337 (12%)
Query: 257 TLSEEQEHVIELARRKLN------IFYTGSAG-TGKSVLLRELIKTLKTMYGTSGAVAVT 309
TL+++Q+ + L+ +FY G +GK+ L I G VA T
Sbjct: 748 TLNDQQKRAADQILAALDDASLPRLFYLDGPGRSGKTYLY---ITLYNICVGRGLKVACT 804
Query: 310 ASTGLAACNIGGITLHSFAGIGLGVGDEAMLLKKVRRSAKHRERWKNIKALVIDEISMID 369
A TG+AA N+ + S + L + ++ R+ + +E +N + DE SM+
Sbjct: 805 AWTGIAA-NLLPLGRTSASLFKLDIRNQCKSSLHQRQLKEAQELAEN-DVFIWDEASMVP 862
Query: 370 GKLLDKLDGIAKTLRRSSKPFGGIQIILCGDFFQLPPV----TKGDQQINFAFQSYSWRT 425
LD +D + + L + +PFGG +IL GDF Q+ PV ++ DQ +S W T
Sbjct: 863 KTALDTVDVLLRDLTKIDQPFGGKILILGGDFRQILPVVERSSRADQVDACIKRSPLW-T 921
Query: 426 AIDATIILQKVFRQQGDHRFVEMLNE--------------MRMGVISDRTLKE--FAELS 469
++ + GD +++ L + + V+ D + E F +
Sbjct: 922 EFQILHLISNMRVTSGDSDWIQFLLNVGDGSANDSDSKVTLPLSVMCDHNIVEEVFGAVI 981
Query: 470 RPLPNDEIVPAELFSTRAEVDNANYSRLKTLPGETMTYEASDGGVIDN--------VELR 521
P +D L +V N + GE Y + D ++++ E
Sbjct: 982 DPTTSDPCDNVILTPKNVDVAQLNDDVHNRMVGEERIYLSRDEVIVEHQADTMHYPTEFL 1041
Query: 522 RKLLDNFLAPKKLELKVGAQVMNIKNID--ATLVNGS 556
K+ + L P L+LK G+ ++ ++N+D A L NGS
Sbjct: 1042 NKMSPSSLPPHILKLKKGSVIILLRNLDVSAGLCNGS 1078
>CE15283B [D] KOG0987 DNA helicase PIF1/RRM3
Length = 1466
Score = 62.0 bits (149), Expect = 4e-09
Identities = 82/337 (24%), Positives = 142/337 (41%), Gaps = 43/337 (12%)
Query: 257 TLSEEQEHVIELARRKLN------IFYTGSAG-TGKSVLLRELIKTLKTMYGTSGAVAVT 309
TL+++Q+ + L+ +FY G +GK+ L I G VA T
Sbjct: 1022 TLNDQQKRAADQILAALDDASLPRLFYLDGPGRSGKTYLY---ITLYNICVGRGLKVACT 1078
Query: 310 ASTGLAACNIGGITLHSFAGIGLGVGDEAMLLKKVRRSAKHRERWKNIKALVIDEISMID 369
A TG+AA N+ + S + L + ++ R+ + +E +N + DE SM+
Sbjct: 1079 AWTGIAA-NLLPLGRTSASLFKLDIRNQCKSSLHQRQLKEAQELAEN-DVFIWDEASMVP 1136
Query: 370 GKLLDKLDGIAKTLRRSSKPFGGIQIILCGDFFQLPPV----TKGDQQINFAFQSYSWRT 425
LD +D + + L + +PFGG +IL GDF Q+ PV ++ DQ +S W T
Sbjct: 1137 KTALDTVDVLLRDLTKIDQPFGGKILILGGDFRQILPVVERSSRADQVDACIKRSPLW-T 1195
Query: 426 AIDATIILQKVFRQQGDHRFVEMLNE--------------MRMGVISDRTLKE--FAELS 469
++ + GD +++ L + + V+ D + E F +
Sbjct: 1196 EFQILHLISNMRVTSGDSDWIQFLLNVGDGSANDSDSKVTLPLSVMCDHNIVEEVFGAVI 1255
Query: 470 RPLPNDEIVPAELFSTRAEVDNANYSRLKTLPGETMTYEASDGGVIDN--------VELR 521
P +D L +V N + GE Y + D ++++ E
Sbjct: 1256 DPTTSDPCDNVILTPKNVDVAQLNDDVHNRMVGEERIYLSRDEVIVEHQADTMHYPTEFL 1315
Query: 522 RKLLDNFLAPKKLELKVGAQVMNIKNID--ATLVNGS 556
K+ + L P L+LK G+ ++ ++N+D A L NGS
Sbjct: 1316 NKMSPSSLPPHILKLKKGSVIILLRNLDVSAGLCNGS 1352
>CE15283A [D] KOG0987 DNA helicase PIF1/RRM3
Length = 1466
Score = 62.0 bits (149), Expect = 4e-09
Identities = 82/337 (24%), Positives = 142/337 (41%), Gaps = 43/337 (12%)
Query: 257 TLSEEQEHVIELARRKLN------IFYTGSAG-TGKSVLLRELIKTLKTMYGTSGAVAVT 309
TL+++Q+ + L+ +FY G +GK+ L I G VA T
Sbjct: 1022 TLNDQQKRAADQILAALDDASLPRLFYLDGPGRSGKTYLY---ITLYNICVGRGLKVACT 1078
Query: 310 ASTGLAACNIGGITLHSFAGIGLGVGDEAMLLKKVRRSAKHRERWKNIKALVIDEISMID 369
A TG+AA N+ + S + L + ++ R+ + +E +N + DE SM+
Sbjct: 1079 AWTGIAA-NLLPLGRTSASLFKLDIRNQCKSSLHQRQLKEAQELAEN-DVFIWDEASMVP 1136
Query: 370 GKLLDKLDGIAKTLRRSSKPFGGIQIILCGDFFQLPPV----TKGDQQINFAFQSYSWRT 425
LD +D + + L + +PFGG +IL GDF Q+ PV ++ DQ +S W T
Sbjct: 1137 KTALDTVDVLLRDLTKIDQPFGGKILILGGDFRQILPVVERSSRADQVDACIKRSPLW-T 1195
Query: 426 AIDATIILQKVFRQQGDHRFVEMLNE--------------MRMGVISDRTLKE--FAELS 469
++ + GD +++ L + + V+ D + E F +
Sbjct: 1196 EFQILHLISNMRVTSGDSDWIQFLLNVGDGSANDSDSKVTLPLSVMCDHNIVEEVFGAVI 1255
Query: 470 RPLPNDEIVPAELFSTRAEVDNANYSRLKTLPGETMTYEASDGGVIDN--------VELR 521
P +D L +V N + GE Y + D ++++ E
Sbjct: 1256 DPTTSDPCDNVILTPKNVDVAQLNDDVHNRMVGEERIYLSRDEVIVEHQADTMHYPTEFL 1315
Query: 522 RKLLDNFLAPKKLELKVGAQVMNIKNID--ATLVNGS 556
K+ + L P L+LK G+ ++ ++N+D A L NGS
Sbjct: 1316 NKMSPSSLPPHILKLKKGSVIILLRNLDVSAGLCNGS 1352
>CE20911 [D] KOG0987 DNA helicase PIF1/RRM3
Length = 1486
Score = 61.6 bits (148), Expect = 5e-09
Identities = 84/340 (24%), Positives = 145/340 (41%), Gaps = 49/340 (14%)
Query: 257 TLSEEQEHVIELARRKLN------IFYT-GSAGTGKSVLLRELIKTLKTMYGTSGAVAVT 309
TL+++Q+ + L+ +FY G G+GK+ L I G VA T
Sbjct: 1042 TLNDQQKRAADQILAALDDASLPRLFYLDGPGGSGKTYLY---ITLYNICVGRGLKVACT 1098
Query: 310 ASTGLAACNIGGITLHSFAGIGLGVGDEAMLLKKVRRSAKHRERWKNIKALVIDEISMID 369
A TG+AA N+ + S + L + ++ R+ + +E +N + DE SM+
Sbjct: 1099 AWTGIAA-NLLPLGRTSASLFKLDIRNQCKSSLHQRQLKEAQELAEN-DVFIWDEASMVP 1156
Query: 370 GKLLDKLDGIAKTLRRSSKPFGGIQIILCGDFFQLPPV----TKGDQQINFAFQSYSWRT 425
LD +D + + L + +PFGG +IL GDF Q+ PV ++ DQ +S W T
Sbjct: 1157 KTALDTVDVLLRDLTKIDQPFGGKILILGGDFRQILPVVERSSRADQVDACIKRSPLW-T 1215
Query: 426 AIDATIILQKVFRQQGDHRFVEMLNE--------------MRMGVISDRTLKE--FAELS 469
++ + GD +++ L + + V+ D + E F +
Sbjct: 1216 EFQILHLISNMRVTSGDSDWIQFLLNVGDGSANHSDSKVTLPLSVMCDHNIVEEVFGAVI 1275
Query: 470 RP---LPNDEIVPAELFSTRAEVDNANYSRLKTLPGETMTYEASDGGVIDN--------V 518
P P D ++ L +V N + GE Y + D ++++
Sbjct: 1276 DPTTSYPCDNVI---LTPKNVDVAQLNDDVHNRMVGEERIYLSRDEVIVEHQADTMHYPT 1332
Query: 519 ELRRKLLDNFLAPKKLELKVGAQVMNIKNID--ATLVNGS 556
E K+ + L P L+LK G+ ++ ++N+D A L NGS
Sbjct: 1333 EFLNKMSPSSLPPHILKLKKGSVIILLRNLDVSAGLCNGS 1372
>At1g35940 [D] KOG0987 DNA helicase PIF1/RRM3
Length = 1678
Score = 60.1 bits (144), Expect = 1e-08
Identities = 43/119 (36%), Positives = 64/119 (53%), Gaps = 13/119 (10%)
Query: 667 IVRNLHKKA---RGAKLPLVQFFTPSGDAR---------IVLVRPETWAMEDEKDVPLVS 714
++RNL K G +L + Q T +A+ IVL+ D K +
Sbjct: 1539 LLRNLDPKGGLCNGTRLQITQLCTQIVEAKVITGDRIGNIVLIPTVNLTPTDTKLPFKMR 1598
Query: 715 RTQLPLILAWSLSIHKSQGQTLSKVKVDL-KRVFEKGQAYVALSRAVSRTGLQVLNFDR 772
R Q PL +A++++I+KSQGQ+L + + L K VF GQ YVALSR S+ GL++L D+
Sbjct: 1599 RRQFPLSVAFAMTINKSQGQSLEHIGLYLPKPVFSHGQLYVALSRVTSKKGLKILILDK 1657
>At3g31980 [D] KOG0987 DNA helicase PIF1/RRM3
Length = 1099
Score = 58.5 bits (140), Expect = 4e-08
Identities = 46/159 (28%), Positives = 78/159 (48%), Gaps = 13/159 (8%)
Query: 627 DQQERIQIESPLSETIFDFFITETDSMSSRIKANVERKKEIVRNLHKKA---RGAKLPLV 683
D Q+ + +P+ F I + + + + ++RN+ K G +L +
Sbjct: 919 DPQDAASLNNPVLTPDFLNSIKLSGLPNHNLTLKIGTPVMLLRNIDPKGGLCNGTRLQVT 978
Query: 684 QFFTPSGDARI---------VLVRPETWAMEDEKDVPLVSRTQLPLILAWSLSIHKSQGQ 734
Q +AR+ V++ + D K + R Q P+ +A++++I+KSQGQ
Sbjct: 979 QMGNHILEARVITGDRVGDKVIIIKSQISPSDTKLPFRMRRRQFPIAVAFAMTINKSQGQ 1038
Query: 735 TLSKVKVDL-KRVFEKGQAYVALSRAVSRTGLQVLNFDR 772
+L +V + L K VF GQ YVALSR S+ GL+VL D+
Sbjct: 1039 SLKEVGIYLPKPVFSHGQLYVALSRVTSKKGLKVLIVDK 1077
>At2g05640 [D] KOG0987 DNA helicase PIF1/RRM3
Length = 1308
Score = 58.5 bits (140), Expect = 4e-08
Identities = 92/334 (27%), Positives = 132/334 (38%), Gaps = 60/334 (17%)
Query: 276 FYTGSAGTGKSVLLRELIKTLKTMYGTSGAVAVT-ASTGLAACNI-GGITLHSFAGIGLG 333
F G GTGK+ L KTL T + G + + AS+G+AA + GG T HS I L
Sbjct: 851 FVNGFGGTGKTYLW----KTLSTYIRSRGEIVLNVASSGMAALLLDGGRTAHSRFAIPLQ 906
Query: 334 VGDEAMLLKKVRRSAKHRERWKNIKALVIDEISMIDGKLLDKLDGIAKTLRRSS--KPFG 391
V + + + + K ++ DE M+ + LD K + ++ KPFG
Sbjct: 907 VNETSTC--SISPDSDLASLLLRAKLIIWDEAPMLHRHCYEALDRTLKDIVQADNHKPFG 964
Query: 392 GIQIILCGDFFQ-LPPVTKGD-QQINFAFQSYSWRTAIDATIILQKVFRQQGDHRFVEML 449
G I GDF Q LP +TKG +QI A + S + L K R D + +
Sbjct: 965 GKTITFGGDFRQILPVITKGSREQIIHASLTSSRLWNSCKVLTLTKNMRLTADPTEKDNI 1024
Query: 450 NEMRMGV--ISDRTLKE--FAELSRPLPNDEIV--------------------------- 478
E + + D L E E + +P D ++
Sbjct: 1025 KEFSDWILKLGDGKLSEPNDGEAAIDIPEDMLLLDSLHPIDSIANCVYPNLLQNLNDQTF 1084
Query: 479 ---PAELFSTRAEVDNANYSRLKTLPGETMTYEASDGGVID---NVELRRKLLDNFLAPK 532
A L T +V N + LPGE Y +SD + D +VE + FL
Sbjct: 1085 FRERAILCPTNDDVSEVNNHIMDLLPGEVKEYFSSD-KICDFDTSVERDANMSTEFLNAI 1143
Query: 533 K--------LELKVGAQVMNIKNIDAT--LVNGS 556
K L LK+G VM I+N+D L NG+
Sbjct: 1144 KCSGVPNHVLRLKLGVPVMLIRNLDQKYGLCNGT 1177
Score = 53.9 bits (128), Expect = 1e-06
Identities = 29/58 (50%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Query: 715 RTQLPLILAWSLSIHKSQGQTLSKVKVDLKR-VFEKGQAYVALSRAVSRTGLQVLNFD 771
R Q P++ + ++I+KSQGQ+LS V + L R VF GQ YVA+SR SR GL++L D
Sbjct: 1223 RRQFPVVPCFGMTINKSQGQSLSHVGIYLPRPVFSHGQLYVAVSRVKSRRGLKILIID 1280
>CE24155 [D] KOG0987 DNA helicase PIF1/RRM3
Length = 180
Score = 58.2 bits (139), Expect = 6e-08
Identities = 52/166 (31%), Positives = 87/166 (52%), Gaps = 14/166 (8%)
Query: 260 EEQEHVIELAR-----RKLNIFYTGSAGTGKSVLLRELIKTLKTMYGTSGAVAVTASTGL 314
E+Q+ + ++ R +++ + G+AGTGK+ L++ LI+ V +T STG
Sbjct: 5 EQQQLLNKIVRDDSQDKQVLLMINGAAGTGKTFLIK-LIENSMNRSVRKRVVLMTGSTGK 63
Query: 315 AACNIGGITLHSFAGIGLGVGDEAMLLKKVRRSAKHRERWKNIKALVIDEISMIDGKLLD 374
AA IGG TLH G+ ++ L++++ A + ++IDEI+++ LD
Sbjct: 64 AAKAIGGRTLHCTIGL---PNEKPEDLERLKYQA---FICVTTRLIIIDEITLLASWHLD 117
Query: 375 KLDGIAK-TLRRSSKPFGGIQIILCGDFFQLP-PVTKGDQQINFAF 418
D + K T +R+ FGG+ IIL GD QL +G +QI+ F
Sbjct: 118 ATDMVLKRTPKRTDALFGGLSIILVGDLRQLNLGGWRGKKQIDTVF 163
>CE05256 [D] KOG0987 DNA helicase PIF1/RRM3
Length = 169
Score = 58.2 bits (139), Expect = 6e-08
Identities = 46/152 (30%), Positives = 78/152 (51%), Gaps = 13/152 (8%)
Query: 259 SEEQEHVIELAR-----RKLNIFYTGSAGTGKSVLLRELIKTLKTMYGTSGAVAVTASTG 313
+E+Q+ + ++ R +++ + G+A TGK+ L++ + ++ G V +T STG
Sbjct: 4 NEQQDLLNKIIRDDSKNKQVLLMINGAARTGKTFLIKLIENSMNRSAGKR-VVLMTGSTG 62
Query: 314 LAACNIGGITLHSFAGIGLGVGDEAMLLKKVRRSAKHRERWKNIKALVIDEISMIDGKLL 373
AA IGG TLH G+ ++ LK + + ++IDEI+++ L
Sbjct: 63 KAAKAIGGRTLHCTIGLPNEKPEDLESLK------SQAFIYATTRLIIIDEITLLASWHL 116
Query: 374 DKLDGIAK-TLRRSSKPFGGIQIILCGDFFQL 404
D D + K T +R+ FGG+ IIL GD QL
Sbjct: 117 DATDMVLKRTQKRTDALFGGLSIILVGDLRQL 148
>At3g30420 [D] KOG0987 DNA helicase PIF1/RRM3
Length = 837
Score = 57.8 bits (138), Expect = 7e-08
Identities = 44/121 (36%), Positives = 64/121 (52%), Gaps = 20/121 (16%)
Query: 664 KKEIVRNLHKKARGAKLPLVQFFTPSGDARIVLVRPETWAMEDEKDVPLVSRTQLPLILA 723
K EI+ + KK + +P RI+L + +D K + R Q P+ +
Sbjct: 718 KAEILSDTTKKRKKVLIP-----------RIIL------SPQDSKHPFTLRRRQFPVRMC 760
Query: 724 WSLSIHKSQGQTLSKVKVDL-KRVFEKGQAYVALSRAVSRTGLQVLNFDRTKVKAHDIVV 782
++++++KSQGQTL++V + L K VF GQ YVALSR S GL VL D +K K V
Sbjct: 761 YAMTVNKSQGQTLNRVALYLPKPVFSHGQLYVALSRVTSPKGLTVL--DTSKKKEGKYVT 818
Query: 783 N 783
N
Sbjct: 819 N 819
>At3g13250 [D] KOG0987 DNA helicase PIF1/RRM3
Length = 1419
Score = 57.8 bits (138), Expect = 7e-08
Identities = 41/119 (34%), Positives = 66/119 (55%), Gaps = 13/119 (10%)
Query: 667 IVRNLHKKA---RGAKLPLVQFFTPSGDARIV--------LVRPETWAMEDEKDVPL-VS 714
++RNL K G +L + Q + +A+++ + P + +P +
Sbjct: 1281 LLRNLDPKGGLCNGTRLQITQLCSHIVEAKVITGDRIGQIVYIPLINITPSDTKLPFKMR 1340
Query: 715 RTQLPLILAWSLSIHKSQGQTLSKVKVDL-KRVFEKGQAYVALSRAVSRTGLQVLNFDR 772
R Q PL +A+ ++I+KSQGQ+L +V + L K VF GQ YVALSR S+TGL++L D+
Sbjct: 1341 RRQFPLSVAFVMTINKSQGQSLEQVGLYLPKPVFSHGQLYVALSRVTSKTGLKILILDK 1399
>At2g07620 [D] KOG0987 DNA helicase PIF1/RRM3
Length = 1241
Score = 57.8 bits (138), Expect = 7e-08
Identities = 45/159 (28%), Positives = 77/159 (48%), Gaps = 13/159 (8%)
Query: 627 DQQERIQIESPLSETIFDFFITETDSMSSRIKANVERKKEIVRNLHKKA---RGAKLPLV 683
D Q+ + +P+ F I + + + + +++N+ K G +L +
Sbjct: 1061 DPQDPASLNNPVFTPYFLNSIKLSGLSNHNLTLKIGTPVMLLKNIDPKGGLCNGTRLQVT 1120
Query: 684 QFFTPSGDARI---------VLVRPETWAMEDEKDVPLVSRTQLPLILAWSLSIHKSQGQ 734
Q +AR+ V++ + D K + R Q P+ +A+++ I KSQGQ
Sbjct: 1121 QMGNHILEARVITGDRVRDKVIIIKAQISPSDTKLPFRMRRRQFPIAVAFAMRIKKSQGQ 1180
Query: 735 TLSKVKVDLKR-VFEKGQAYVALSRAVSRTGLQVLNFDR 772
+L +V++ L R VF GQ YVALSR S+ GL+VL D+
Sbjct: 1181 SLKEVEIYLPRPVFSHGQLYVALSRVTSKKGLKVLIVDK 1219
>At3g42100 [D] KOG0987 DNA helicase PIF1/RRM3
Length = 1752
Score = 57.4 bits (137), Expect = 9e-08
Identities = 43/119 (36%), Positives = 63/119 (52%), Gaps = 13/119 (10%)
Query: 667 IVRNLHKKA---RGAKLPLVQFFTPSGDAR---------IVLVRPETWAMEDEKDVPLVS 714
++RNL K G +L + Q A+ IVL+ D K +
Sbjct: 1613 LLRNLDPKGGLCNGTRLQITQLAKQVVQAKVITRDRIGDIVLIPLINLTPSDTKLPFKMR 1672
Query: 715 RTQLPLILAWSLSIHKSQGQTLSKVKVDL-KRVFEKGQAYVALSRAVSRTGLQVLNFDR 772
R Q PL +A++++I+KSQGQ+L +V + L K VF GQ YVALSR S+ GL++L D+
Sbjct: 1673 RRQFPLSVAFAMTINKSQGQSLEQVGLYLPKPVFSHGQLYVALSRVTSKKGLKILILDK 1731
>At5g34960_2 [D] KOG0987 DNA helicase PIF1/RRM3
Length = 442
Score = 57.4 bits (137), Expect = 9e-08
Identities = 44/129 (34%), Positives = 65/129 (50%), Gaps = 13/129 (10%)
Query: 657 IKANVERKKEIVRNLHKKA---RGAKLPLVQFFTPSGDAR---------IVLVRPETWAM 704
++ V ++RNL K G +L + Q T +A+ IVL+
Sbjct: 293 LRLKVSAPVMLLRNLDPKGGLCNGTRLQITQLCTQIVEAKVITGDIIGHIVLIPTVNLTP 352
Query: 705 EDEKDVPLVSRTQLPLILAWSLSIHKSQGQTLSKVKVDL-KRVFEKGQAYVALSRAVSRT 763
D K + R Q PL +A++++I+ SQGQ+L V + L K VF GQ YVALSR S+
Sbjct: 353 TDTKLPFKMRRRQFPLSVAFAMTINTSQGQSLEHVGLYLPKAVFSHGQLYVALSRVTSKK 412
Query: 764 GLQVLNFDR 772
GL+ L D+
Sbjct: 413 GLKFLILDK 421
>At1g54430 [D] KOG0987 DNA helicase PIF1/RRM3
Length = 1639
Score = 57.0 bits (136), Expect = 1e-07
Identities = 36/80 (45%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 705 EDEKDVPLVSRTQLPLILAWSLSIHKSQGQTLSKVKVDL-KRVFEKGQAYVALSRAVSRT 763
+D K + R Q P+ + ++++I+KSQGQTL++V + L K VF GQ YVALSR S
Sbjct: 1544 QDSKHPFTLRRRQFPVRMCYAMTINKSQGQTLNRVALYLPKPVFSHGQLYVALSRVTSPK 1603
Query: 764 GLQVLNFDRTKVKAHDIVVN 783
GL VL D +K K V N
Sbjct: 1604 GLTVL--DTSKKKEGKYVTN 1621
>At2g14470 [D] KOG0987 DNA helicase PIF1/RRM3
Length = 1265
Score = 56.6 bits (135), Expect = 2e-07
Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 13/119 (10%)
Query: 667 IVRNLHKKA---RGAKLPLVQFFTPSGDARIV--------LVRPETWAMEDEKDVPL-VS 714
++RNL K G +L + Q T +A+++ ++ P +P +
Sbjct: 1143 LLRNLDPKGGLCNGTRLQITQLCTQIVEAKVITGDRIGHIILIPTVNLTPTNTKLPFKMR 1202
Query: 715 RTQLPLILAWSLSIHKSQGQTLSKVKVDL-KRVFEKGQAYVALSRAVSRTGLQVLNFDR 772
R Q PL +A+ ++I+KS+GQ+L V + L K VF GQ YVALSR S+ GL++L D+
Sbjct: 1203 RRQFPLSVAFVMTINKSEGQSLEHVGLYLPKPVFSHGQLYVALSRVTSKKGLKILILDK 1261
>At3g30560 [D] KOG0987 DNA helicase PIF1/RRM3
Length = 1473
Score = 55.5 bits (132), Expect = 4e-07
Identities = 36/96 (37%), Positives = 55/96 (56%), Gaps = 1/96 (1%)
Query: 677 GAKLPLVQFFTPSGDARIVLVRPETWAMEDEKDVPLVSRTQLPLILAWSLSIHKSQGQTL 736
G KL + T + ++V++ D + + R Q PL +A++++I+KSQGQ+L
Sbjct: 1357 GDKLVQGRILTGTRVGKLVIIPRMPLTPSDRRLPFKMKRRQFPLSVAFAMTINKSQGQSL 1416
Query: 737 SKVKVDL-KRVFEKGQAYVALSRAVSRTGLQVLNFD 771
V + L K VF GQ YVA+SR S+ GL+VL D
Sbjct: 1417 GNVGIYLPKPVFSHGQLYVAMSRVKSKGGLKVLITD 1452
>At1g52960 [D] KOG0987 DNA helicase PIF1/RRM3
Length = 996
Score = 55.5 bits (132), Expect = 4e-07
Identities = 35/83 (42%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Query: 684 QFFTPSGDARIVLVRPETWAMEDEKDVPL-VSRTQLPLILAWSLSIHKSQGQTLSKVKVD 742
+F T + +IVL+ P + +P + R Q PL +A++++I+KSQGQTL V +
Sbjct: 911 RFITGNRVGKIVLI-PRMLITPSDTRLPFKMRRRQFPLSVAFAMTINKSQGQTLESVGLY 969
Query: 743 LKR-VFEKGQAYVALSRAVSRTG 764
L R VF GQ YVA+SR S+TG
Sbjct: 970 LPRPVFSHGQLYVAISRVTSKTG 992
Score = 54.7 bits (130), Expect = 6e-07
Identities = 86/354 (24%), Positives = 131/354 (36%), Gaps = 78/354 (22%)
Query: 276 FYTGSAGTGKSVLLRELIKTLKTMYGTSGAVAVTASTGLAACNI-GGITLHSFAGIGLGV 334
F G GTGK+ L + L +++ S VA S+G+AA + GG T HS GI +
Sbjct: 568 FVYGFGGTGKTFLWKLLSAAIRSKGDISLNVA---SSGIAALLLDGGRTTHSRFGIPINP 624
Query: 335 GDEAMLLKKVRRSAKHRERWKNIKALVIDEISMIDGKLLDKLDGIAKTLRRS--SKPFGG 392
+ + + R + E K ++ DE M+ + LD + + + KPFGG
Sbjct: 625 NESSTC--NISRGSDLGELVKEANLIIWDETPMMSKHCFESLDRTLRDIMNNPGDKPFGG 682
Query: 393 IQIILCGDFFQLPPVTKGDQQINFAF----QSYSWRTAIDATIILQKVFRQQGDHRFVEM 448
I+ GDF Q+ PV G + F SY W KV + R +
Sbjct: 683 KGIVFGGDFRQVLPVINGAGREEIVFAALNSSYIWEHC--------KVLELTKNMRLLAN 734
Query: 449 LNEMRMGVIS--DRTLKEFAELSRPLPNDEI----VPAE--------------------- 481
++E I + + + + PND I +P E
Sbjct: 735 ISEHEKRDIEYFSKWILDVGDGKISQPNDGIALIDIPEEFLINGDNDPVESIIEAVYGNT 794
Query: 482 ---------------LFSTRAEVDNANYSRLKTLPGETMTYEASDGGVIDNVELRRKLLD 526
L T +V++ N + L GE Y +SD ID + D
Sbjct: 795 FMEEKDPKFFQGRAILCPTNEDVNSINEHMMSMLDGEERIYLSSDS--IDPADTSSANND 852
Query: 527 NF------------LAPKKLELKVGAQVMNIKNIDAT--LVNGSLGKVLAFLDS 566
+ L L LKVG VM ++N+D L NG+ +V D+
Sbjct: 853 AYSADFLNSVRVSGLPNHCLRLKVGCPVMLLRNMDPNKGLCNGTRLQVTQMADT 906
>At5g37110 [D] KOG0987 DNA helicase PIF1/RRM3
Length = 1307
Score = 55.1 bits (131), Expect = 5e-07
Identities = 35/89 (39%), Positives = 54/89 (60%), Gaps = 3/89 (3%)
Query: 682 LVQFFTPSGD--ARIVLVRPETWAMEDEKDVPLVSRTQLPLILAWSLSIHKSQGQTLSKV 739
++Q +GD +VL+ A D K + RTQLPL + ++++I+KSQGQ+L +V
Sbjct: 1204 ILQAMILTGDRAGHLVLIPRLKLAPSDTKLPFRMRRTQLPLAVCFAMTINKSQGQSLKRV 1263
Query: 740 KVDLKR-VFEKGQAYVALSRAVSRTGLQV 767
+ L R F GQ YVA+SR S+T L++
Sbjct: 1264 GIFLLRPCFSHGQLYVAISRVTSKTRLKI 1292
>At2g05080 [D] KOG0987 DNA helicase PIF1/RRM3
Length = 1219
Score = 54.3 bits (129), Expect = 8e-07
Identities = 27/55 (49%), Positives = 41/55 (74%), Gaps = 1/55 (1%)
Query: 715 RTQLPLILAWSLSIHKSQGQTLSKVKVDLKR-VFEKGQAYVALSRAVSRTGLQVL 768
RTQLPL + ++++I+KSQGQ+L +V + L R F Q YVA+SR S++GL++L
Sbjct: 1120 RTQLPLAVCFAMTINKSQGQSLKRVGIFLPRPCFSHSQLYVAISRVTSKSGLKIL 1174
>CE26961 [D] KOG0987 DNA helicase PIF1/RRM3
Length = 80
Score = 53.9 bits (128), Expect = 1e-06
Identities = 25/56 (44%), Positives = 40/56 (70%)
Query: 735 TLSKVKVDLKRVFEKGQAYVALSRAVSRTGLQVLNFDRTKVKAHDIVVNFYESLSS 790
TL ++ L+RVF GQAYVALSRA S ++++ FD + V+A+ V++FY+S+ +
Sbjct: 2 TLDCAEISLERVFADGQAYVALSRARSLAAIRIIGFDASCVRANSKVIDFYKSIEA 57
>At5g32630 [D] KOG0987 DNA helicase PIF1/RRM3
Length = 856
Score = 53.5 bits (127), Expect = 1e-06
Identities = 29/59 (49%), Positives = 42/59 (71%), Gaps = 1/59 (1%)
Query: 715 RTQLPLILAWSLSIHKSQGQTLSKVKVDL-KRVFEKGQAYVALSRAVSRTGLQVLNFDR 772
R Q PL A++++I+KSQGQ+L + + L K VF GQ YVALSR S++GL++L D+
Sbjct: 777 RRQFPLSDAFAMTINKSQGQSLEQAGLYLPKLVFSHGQLYVALSRVTSKSGLKILILDK 835
>At1g64410_2 [D] KOG0987 DNA helicase PIF1/RRM3
Length = 687
Score = 51.2 bits (121), Expect = 7e-06
Identities = 46/155 (29%), Positives = 68/155 (43%), Gaps = 12/155 (7%)
Query: 276 FYTGSAGTGKSVLLRELIKTLKTMYGTSGAVAVTASTGLAACNI-GGITLHSFAGIGLGV 334
F G GTGK+ L + L +++ S VA S+G+AA + GG T HS GI +
Sbjct: 480 FVYGFGGTGKTFLWKLLSAAIRSKGDISLNVA---SSGIAALLLDGGRTAHSRFGIPINP 536
Query: 335 GDEAMLLKKVRRSAKHRERWKNIKALVIDEISMIDGKLLDKLDGIAKTLRRS--SKPFGG 392
+ + + R E K ++ DE M+ + LD + + + KPFGG
Sbjct: 537 NESSTC--NISRGLDFGELVKEANLIIWDEAHMMSKHCFESLDRTLRDIMNNPGDKPFGG 594
Query: 393 IQIILCGDFFQLPPVTKGDQQINFAF----QSYSW 423
I+ GDF Q+ V G + F SY W
Sbjct: 595 KVIVFGGDFRQVLSVINGAGREEIVFAALNSSYIW 629
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.315 0.131 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,221,903
Number of Sequences: 60738
Number of extensions: 2002621
Number of successful extensions: 8129
Number of sequences better than 1.0e-05: 33
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 8021
Number of HSP's gapped (non-prelim): 81
length of query: 872
length of database: 30,389,216
effective HSP length: 115
effective length of query: 757
effective length of database: 23,404,346
effective search space: 17717089922
effective search space used: 17717089922
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)