ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII1315 good J KOG3331 Translation, ribosomal structure and biogenesis Mitochondrial/chloroplast ribosomal protein L4/L29
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII1315 469265 468270 -332
(332 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YLR439w [J] KOG3331 Mitochondrial/chloroplast ribosomal protein ... 290 3e-78
SPCC4G3.06c [J] KOG3331 Mitochondrial/chloroplast ribosomal prot... 79 1e-14
At1g07830 [J] KOG3331 Mitochondrial/chloroplast ribosomal protei... 59 1e-08
CE07706 [J] KOG3331 Mitochondrial/chloroplast ribosomal protein ... 57 5e-08
7299193 [J] KOG3331 Mitochondrial/chloroplast ribosomal protein ... 51 2e-06
>YLR439w [J] KOG3331 Mitochondrial/chloroplast ribosomal protein L4/L29
Length = 319
Score = 290 bits (741), Expect = 3e-78
Identities = 149/308 (48%), Positives = 208/308 (67%), Gaps = 10/308 (3%)
Query: 16 ARTRFTKPKPKPA--KRENVRLPTQRTHHDNDLKITAPIPPAAANLTCPDDHPLWQFFSE 73
ART+FTKPKPK ++ +R PTQ THH N+L+IT PIPP +NL CPDDHPLWQFFS
Sbjct: 15 ARTKFTKPKPKQPVLPKDKIRPPTQLTHHSNNLRITEPIPPTTSNLRCPDDHPLWQFFSN 74
Query: 74 KKFLRTPEELDTLS--RPWTIPELRRKSFTDLHSLWYTCLKERNVLARENHLVQFNFEAQ 131
KKF+R+ ++L S RPW+IPELR KSF DLHSLWY CL+E+NVLARENHL++ +
Sbjct: 75 KKFIRSADDLPPSSHIRPWSIPELRHKSFNDLHSLWYNCLREQNVLARENHLLKNIVGST 134
Query: 132 TEAYQDISEKIRTTMWRIRHVLSERDWAFKIANE--KFAVEKQVFIESFEKDFLEAPANE 189
+ + ++S IRTTMW+IRHVL+ER+ A+ + E + E++ F+++ D+
Sbjct: 135 HDEFSELSNSIRTTMWQIRHVLNERELAYSASREFLQDESERKKFLDTLANDYFLNKDIP 194
Query: 190 DEEIFESLQRFQYAIYGISEYIDENKVDRTFVDGLKAVATLKLKKFALRNEDIKNFLEES 249
D+E+ L RFQ AI+GISE I +N VD F+DG+K +A LKL++F N+ I E S
Sbjct: 195 DDEVASMLTRFQLAIFGISETIQDNTVDINFIDGIKFLANLKLQRFKDSNDLIS---EIS 251
Query: 250 NNTIVDAGESFLLYTSENTESAIAEACQAVRELREN-GSSVSRYDELETVQEYVNKLAEA 308
I D GESF+L+TS+ A+ EAC A+++LR++ + V + DEL TV++Y+ +L A
Sbjct: 252 QEPITDVGESFILFTSDFEPHAVQEACVAIKDLRKSPDNKVPKLDELPTVRKYLKQLIHA 311
Query: 309 QMAKVTEA 316
+ A
Sbjct: 312 SSVEQATA 319
>SPCC4G3.06c [J] KOG3331 Mitochondrial/chloroplast ribosomal protein L4/L29
Length = 144
Score = 78.6 bits (192), Expect = 1e-14
Identities = 45/122 (36%), Positives = 62/122 (49%), Gaps = 3/122 (2%)
Query: 51 PIPPAAANLTCPDDHPLWQFFSEKKFLRTPEELDTLSRPWTIPELRRKSFTDLHSLWYTC 110
P+P + D HPLW FF +K+ L P E R W ELR KSF DLH LWY C
Sbjct: 22 PVPKVKSAPKVSDTHPLWNFFRDKQALPPPSEEAKFGRAWAAEELRWKSFNDLHGLWYNC 81
Query: 111 LKERNVLARENHLVQFNFEAQTEAYQDISEKIRTTMWRIRHVLSERDWAFKIANEKFAVE 170
L+E+N+L + ++ +A + + TM I+ VL ER A+ A + +E
Sbjct: 82 LREKNLLFTQRAEMKRLQLTIPKASNERVLAVNKTMAAIKFVLWERQRAYTSAKQ---LE 138
Query: 171 KQ 172
KQ
Sbjct: 139 KQ 140
>At1g07830 [J] KOG3331 Mitochondrial/chloroplast ribosomal protein L4/L29
Length = 144
Score = 58.9 bits (141), Expect = 1e-08
Identities = 40/106 (37%), Positives = 59/106 (54%), Gaps = 11/106 (10%)
Query: 55 AAANLTCPDDHPLWQFFSEKKFLRTPEELDTL--SRPWTIPELRRKSFTDLHSLWYTCLK 112
AAA+ +PL +FF +F R+ +E + R W ELR KS+ DL LWY LK
Sbjct: 26 AAASTIRTPTNPLEEFF---EFDRSQDEDKPVVYGRGWKASELRLKSWDDLQKLWYVLLK 82
Query: 113 ERNVLARENHLVQFNFEAQTEAYQDISE--KIRTTMWRIRHVLSER 156
E+N+L + ++Q AQ + + K+R +M RI+HVL+ER
Sbjct: 83 EKNMLMTQRQMLQ----AQNMQFPNPERIPKVRRSMCRIKHVLTER 124
>CE07706 [J] KOG3331 Mitochondrial/chloroplast ribosomal protein L4/L29
Length = 252
Score = 56.6 bits (135), Expect = 5e-08
Identities = 35/92 (38%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 88 RPWTIPELRRKSFTDLHSLWYTCLKERNVLARENHLVQFNFEAQTEAYQDISEKIRTTMW 147
R WT ELR KS +DLH LWY CLKERN+L A+ + +++ TM
Sbjct: 86 RSWTAEELRLKSNSDLHKLWYVCLKERNMLITMKK--AHTSRARNMPNPERLDRVHETMD 143
Query: 148 RIRHVLSER-DWAFKIANEKFAVEKQVFIESF 178
RI V+ ER D F++ + A ++ I SF
Sbjct: 144 RIESVVHERNDAVFRLETGESAAPRKRTITSF 175
>7299193 [J] KOG3331 Mitochondrial/chloroplast ribosomal protein L4/L29
Length = 182
Score = 51.2 bits (121), Expect = 2e-06
Identities = 31/96 (32%), Positives = 50/96 (51%), Gaps = 4/96 (4%)
Query: 67 LWQFFSEKKFLRTPEELDTLSRPWTIPELRRKSFTDLHSLWYTCLKERNVLARENHLVQF 126
L +FF +KK E + R W ELR KS +LH LW+ LKERN+L H +
Sbjct: 14 LMEFFDDKK--NWSENEVKVGRAWRTEELRIKSNKELHQLWFVLLKERNMLLTMEH--EC 69
Query: 127 NFEAQTEAYQDISEKIRTTMWRIRHVLSERDWAFKI 162
N + + + +K++ +M + V+ ER+ A+ +
Sbjct: 70 NDKMEVFPSPERIDKVKISMENLETVVRERNKAYHL 105
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.316 0.131 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,133,388
Number of Sequences: 60738
Number of extensions: 897704
Number of successful extensions: 3006
Number of sequences better than 1.0e-05: 5
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2998
Number of HSP's gapped (non-prelim): 6
length of query: 332
length of database: 30,389,216
effective HSP length: 107
effective length of query: 225
effective length of database: 23,890,250
effective search space: 5375306250
effective search space used: 5375306250
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)