ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII1317 good A KOG3460 RNA processing and modification Small nuclear ribonucleoprotein (snRNP) LSM3
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII1317 469929 470177 83
(83 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YLR438c-a [A] KOG3460 Small nuclear ribonucleoprotein (snRNP) LSM3 115 1e-26
At1g76860 [A] KOG3460 Small nuclear ribonucleoprotein (snRNP) LSM3 79 1e-15
CE28143 [A] KOG3460 Small nuclear ribonucleoprotein (snRNP) LSM3 78 2e-15
SPBC9B6.05c [A] KOG3460 Small nuclear ribonucleoprotein (snRNP) ... 75 2e-14
Hs7657315 [A] KOG3460 Small nuclear ribonucleoprotein (snRNP) LSM3 75 2e-14
At1g21190 [A] KOG3460 Small nuclear ribonucleoprotein (snRNP) LSM3 72 1e-13
7301084 [A] KOG3460 Small nuclear ribonucleoprotein (snRNP) LSM3 51 2e-07
SPBC20F10.09 [A] KOG1775 U6 snRNA-associated Sm-like protein 47 5e-06
>YLR438c-a [A] KOG3460 Small nuclear ribonucleoprotein (snRNP) LSM3
Length = 89
Score = 115 bits (287), Expect = 1e-26
Identities = 55/81 (67%), Positives = 67/81 (81%)
Query: 3 DTPLDLLKLNLDERVYVKLRDARELVGTLQAFDSHCNIVLSDSKETIYELVEGDLKTTER 62
+TPLDLLKLNLDERVY+KLR AR LVGTLQAFDSHCNIVLSD+ ETIY+L +L +ER
Sbjct: 2 ETPLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESER 61
Query: 63 FSEMIFVRGGLVALVTTPEDE 83
EM+F+RG V L++TP ++
Sbjct: 62 RCEMVFIRGDTVTLISTPSED 82
>At1g76860 [A] KOG3460 Small nuclear ribonucleoprotein (snRNP) LSM3
Length = 98
Score = 78.6 bits (192), Expect = 1e-15
Identities = 43/82 (52%), Positives = 55/82 (66%), Gaps = 6/82 (7%)
Query: 5 PLDLLKLNLDERVYVKLRDARELVGTLQAFDSHCNIVLSDSKETIY------ELVEGDLK 58
PLDL++L+LDER+YVKLR REL G L AFD H N++L D +ETI E E ++
Sbjct: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVEIDDETYEEIVR 71
Query: 59 TTERFSEMIFVRGGLVALVTTP 80
TT+R E +FVRG V LV+ P
Sbjct: 72 TTKRTIEFLFVRGDGVILVSPP 93
>CE28143 [A] KOG3460 Small nuclear ribonucleoprotein (snRNP) LSM3
Length = 102
Score = 78.2 bits (191), Expect = 2e-15
Identities = 44/84 (52%), Positives = 57/84 (67%), Gaps = 6/84 (7%)
Query: 3 DTPLDLLKLNLDERVYVKLRDARELVGTLQAFDSHCNIVLSDSKETI------YELVEGD 56
+ PLDLL+L+LDERVYVK+R+ REL G L+AFD H N+VLS+ +ETI + E
Sbjct: 15 EEPLDLLRLSLDERVYVKMRNDRELRGRLRAFDQHLNMVLSEVEETITTREVDEDTFEEI 74
Query: 57 LKTTERFSEMIFVRGGLVALVTTP 80
K T+R M+FVRG V LV+ P
Sbjct: 75 YKQTKRVVPMLFVRGDSVILVSPP 98
>SPBC9B6.05c [A] KOG3460 Small nuclear ribonucleoprotein (snRNP) LSM3
Length = 93
Score = 75.1 bits (183), Expect = 2e-14
Identities = 43/84 (51%), Positives = 56/84 (66%), Gaps = 6/84 (7%)
Query: 5 PLDLLKLNLDERVYVKLRDARELVGTLQAFDSHCNIVLSDSKE--TIYELVEGD----LK 58
PLDL++L+LDE VYVKLR REL G L A+D H N+VL D++E TI++ E D LK
Sbjct: 10 PLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALK 69
Query: 59 TTERFSEMIFVRGGLVALVTTPED 82
T + EM+FVRG V L+ P +
Sbjct: 70 TIRKHYEMLFVRGDSVILIAPPRN 93
>Hs7657315 [A] KOG3460 Small nuclear ribonucleoprotein (snRNP) LSM3
Length = 102
Score = 75.1 bits (183), Expect = 2e-14
Identities = 40/84 (47%), Positives = 55/84 (64%), Gaps = 6/84 (7%)
Query: 3 DTPLDLLKLNLDERVYVKLRDARELVGTLQAFDSHCNIVLSDSKETI------YELVEGD 56
+ PLDL++L+LDER+YVK+R+ REL G L A+D H N++L D +ET+ E E
Sbjct: 15 EEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74
Query: 57 LKTTERFSEMIFVRGGLVALVTTP 80
K+T+R M+FVRG V LV P
Sbjct: 75 YKSTKRNIPMLFVRGDGVVLVAPP 98
>At1g21190 [A] KOG3460 Small nuclear ribonucleoprotein (snRNP) LSM3
Length = 97
Score = 72.0 bits (175), Expect = 1e-13
Identities = 39/82 (47%), Positives = 53/82 (64%), Gaps = 6/82 (7%)
Query: 5 PLDLLKLNLDERVYVKLRDARELVGTLQAFDSHCNIVLSDSKETIY------ELVEGDLK 58
PLDL++L+++ER+YVKLR REL G L AFD H N++L D +E I E E ++
Sbjct: 12 PLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIEIDDETYEEIVR 71
Query: 59 TTERFSEMIFVRGGLVALVTTP 80
TT+R +FVRG V LV+ P
Sbjct: 72 TTKRTVPFLFVRGDGVILVSPP 93
>7301084 [A] KOG3460 Small nuclear ribonucleoprotein (snRNP) LSM3
Length = 143
Score = 51.2 bits (121), Expect = 2e-07
Identities = 30/66 (45%), Positives = 39/66 (58%), Gaps = 6/66 (9%)
Query: 21 LRDARELVGTLQAFDSHCNIVLSDSKETI------YELVEGDLKTTERFSEMIFVRGGLV 74
+R+ REL G L AFD H N+VL D++ET+ E E KT +R M+FVRG V
Sbjct: 1 MRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEVYKTAKRTIPMLFVRGDGV 60
Query: 75 ALVTTP 80
LV+ P
Sbjct: 61 ILVSPP 66
>SPBC20F10.09 [A] KOG1775 U6 snRNA-associated Sm-like protein
Length = 80
Score = 47.0 bits (110), Expect = 5e-06
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 1 MSDTPLDLLKLNLDERVYVKLRDARELVGTLQAFDSHCNIVLSDSKETIYELVEGDLKTT 60
M+ PL+L+ + ++V ++ RE GTL FD + NIVL D E Y+ V G T
Sbjct: 3 MTILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTE--YDTVTG---VT 57
Query: 61 ERFSEMIFVRGGLVALV 77
E+ SEM+ G+ L+
Sbjct: 58 EKHSEMLLNGNGMCMLI 74
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.318 0.137 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,587,401
Number of Sequences: 60738
Number of extensions: 151741
Number of successful extensions: 472
Number of sequences better than 1.0e-05: 8
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 460
Number of HSP's gapped (non-prelim): 8
length of query: 83
length of database: 30,389,216
effective HSP length: 59
effective length of query: 24
effective length of database: 26,805,674
effective search space: 643336176
effective search space used: 643336176
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)