ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII1410 good K KOG0214 Transcription RNA polymerase II, second largest subunit
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII1410 505355 501693 -1221
(1221 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YOR151c [K] KOG0214 RNA polymerase II second largest subunit 2171 0.0
At4g21710 [K] KOG0214 RNA polymerase II second largest subunit 1435 0.0
Hs4505941 [K] KOG0214 RNA polymerase II second largest subunit 1380 0.0
7299847 [K] KOG0214 RNA polymerase II second largest subunit 1374 0.0
CE01162 [K] KOG0214 RNA polymerase II second largest subunit 1340 0.0
ECU10g0250 [K] KOG0214 RNA polymerase II second largest subunit 1325 0.0
SPAC23G3.01 [K] KOG0214 RNA polymerase II second largest subunit 914 0.0
SPAC4G9.08c [K] KOG0215 RNA polymerase III second largest subunit 735 0.0
YOR207c [K] KOG0215 RNA polymerase III second largest subunit 714 0.0
CE00690 [K] KOG0215 RNA polymerase III second largest subunit 692 0.0
7303535 [K] KOG0215 RNA polymerase III second largest subunit 688 0.0
ECU11g0370 [K] KOG0215 RNA polymerase III second largest subunit 668 0.0
At5g45140 [K] KOG0215 RNA polymerase III second largest subunit 656 0.0
At3g18090 [K] KOG0214 RNA polymerase II second largest subunit 561 e-159
At3g23780 [K] KOG0214 RNA polymerase II second largest subunit 524 e-148
CE05629 [K] KOG0216 RNA polymerase I second largest subunit 387 e-107
7296211 [K] KOG0216 RNA polymerase I second largest subunit 342 2e-93
YPR010c [K] KOG0216 RNA polymerase I second largest subunit 337 9e-92
At1g29940 [K] KOG0216 RNA polymerase I second largest subunit 309 2e-83
SPBP23A10.07 [K] KOG0216 RNA polymerase I second largest subunit 301 5e-81
Hs14149912 [K] KOG0216 RNA polymerase I second largest subunit 296 1e-79
ECU03g0440 [K] KOG0216 RNA polymerase I second largest subunit 296 1e-79
Hs8922399 [K] KOG0215 RNA polymerase III second largest subunit 293 9e-79
AtCh015 [K] KOG0214 RNA polymerase II second largest subunit 140 2e-32
Hs22058718 [K] KOG0215 RNA polymerase III second largest subunit 114 7e-25
Hs9506619 [K] KOG0216 RNA polymerase I second largest subunit 52 6e-06
>YOR151c [K] KOG0214 RNA polymerase II second largest subunit
Length = 1224
Score = 2171 bits (5626), Expect = 0.0
Identities = 1065/1199 (88%), Positives = 1138/1199 (94%), Gaps = 7/1199 (0%)
Query: 25 WTVISAFFREKGLVSQQLDSFNQFINYTIQDLILEDSTLILEQLAQHTTETDNISRKYEI 84
W VISAFFREKGLVSQQLDSFNQF++YT+QD+I EDSTLILEQLAQHTTE+DNISRKYEI
Sbjct: 31 WAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHTTESDNISRKYEI 90
Query: 85 SFGKIYLAKPSMTESDGVSHAMYPQEARLRNLTYASGLFVEIQKRTYQAIDIPGRDLKYX 144
SFGKIY+ KP + ESDGV+HA+YPQEARLRNLTY+SGLFV+++KRTY+AID+PGR+LKY
Sbjct: 91 SFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYEAIDVPGRELKYE 150
Query: 145 XXXXXXXXXXXXXXXFIGRVPIMLRSKYCLLDDLTESDLYRLKECPFDMGGYFIINGSEK 204
FIGR+PIMLRSK C L + TESDLY+LKECPFDMGGYFIINGSEK
Sbjct: 151 LIAEESEDDSESGKVFIGRLPIMLRSKNCYLSEATESDLYKLKECPFDMGGYFIINGSEK 210
Query: 205 VLIAQERSAGNIVQVFKKSAPSPISHIAEIRSALEKGSRFISTLQVKLYGREGSTSRTIK 264
VLIAQERSAGNIVQVFKK+APSPISH+AEIRSALEKGSRFISTLQVKLYGREGS++RTIK
Sbjct: 211 VLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGREGSSARTIK 270
Query: 265 ATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEEGFVIQDRETA 324
ATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVE+GFVIQDRETA
Sbjct: 271 ATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDGFVIQDRETA 330
Query: 325 LDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLLLCAL 384
LDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLLLCAL
Sbjct: 331 LDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLLLCAL 390
Query: 385 DRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRDILRFMQRSVEEAKDFNLKLAVKA 444
DRKDQDDRDHFGKKRLDLAGPLLAQLFKTLF+KLT+DI R+MQR+VEEA DFN+KLA+ A
Sbjct: 391 DRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYMQRTVEEAHDFNMKLAINA 450
Query: 445 TTITAGLKYALATGNWGEQKKSMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKLAK 504
TIT+GLKYALATGNWGEQKK+MSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKLAK
Sbjct: 451 KTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKLAK 510
Query: 505 PRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPLPIITFLNEWGMEPLEDYI 564
PRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDP+PIITFL+EWGMEPLEDY+
Sbjct: 511 PRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITFLSEWGMEPLEDYV 570
Query: 565 PHQSPDATRVFVNGVWHGIHRNPAKLVDTIRKLRRKGDITPEVSIVRDIREKELKIFTDA 624
PHQSPDATRVFVNGVWHG+HRNPA+L++T+R LRRKGDI PEVS++RDIREKELKIFTDA
Sbjct: 571 PHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDINPEVSMIRDIREKELKIFTDA 630
Query: 625 GRVYRPLFIVDENPETGRKELKVKKGHVRKLMLTEYQDIEGGFDDEEEMNYTWTSLLNEG 684
GRVYRPLFIV+++ G KELKV+KGH+ KLM TEYQDIEGGF+D EE YTW+SLLNEG
Sbjct: 631 GRVYRPLFIVEDDESLGHKELKVRKGHIAKLMATEYQDIEGGFEDVEE--YTWSSLLNEG 688
Query: 685 LVEYIDAEEEETILIAMQHEDLDPALLPVADSEDDL--DPARRIRAIHNSNIFTHCEIHP 742
LVEYIDAEEEE+ILIAMQ EDL+PA A+ E+DL DPA+RIR H++ FTHCEIHP
Sbjct: 689 LVEYIDAEEEESILIAMQPEDLEPA---EANEENDLDVDPAKRIRVSHHATTFTHCEIHP 745
Query: 743 SMILGVAASVIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYYPQKPLGT 802
SMILGVAAS+IPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYYPQKPLGT
Sbjct: 746 SMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYYPQKPLGT 805
Query: 803 TRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKR 862
TRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEK+
Sbjct: 806 TRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKK 865
Query: 863 IGMSITESFEKPHRTNTLRMKHGTYDKLDDDGLIAPGVRVSGDDMIIGKTTPIPPDAEEL 922
GMSITE+FEKP RTNTLRMKHGTYDKLDDDGLIAPGVRVSG+D+IIGKTTPI PD EEL
Sbjct: 866 YGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVIIGKTTPISPDEEEL 925
Query: 923 GQRTAFHSKRDASTPLRSTENGIVDQVLITTNQEGLKFVKVRVRTTKIPQIGDKFASRHG 982
GQRTA+HSKRDASTPLRSTENGIVDQVL+TTNQ+GLKFVKVRVRTTKIPQIGDKFASRHG
Sbjct: 926 GQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTKIPQIGDKFASRHG 985
Query: 983 QKGTIGITYRTEDMPFTAEGVVPDLIINPHAIPSRMTVAHLIECLLSKVAALSGNEGDAS 1042
QKGTIGITYR EDMPFTAEG+VPDLIINPHAIPSRMTVAHLIECLLSKVAALSGNEGDAS
Sbjct: 986 QKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALSGNEGDAS 1045
Query: 1043 PFTDITVDGISRLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHA 1102
PFTDITV+GIS+LLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHA
Sbjct: 1046 PFTDITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHA 1105
Query: 1103 RARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAAFLKERLMEASDAFRVHICGI 1162
RARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAA+FLKERLMEASDAFRVHICGI
Sbjct: 1106 RARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKERLMEASDAFRVHICGI 1165
Query: 1163 CGLMSVVAKLKHNQFECRSCKNKIDIYQVHIPYAAKLLFQELMAMNIAPRLYTDRSKDF 1221
CGLM+V+AKL HNQFEC+ C NKIDIYQ+HIPYAAKLLFQELMAMNI PRLYTDRS+DF
Sbjct: 1166 CGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYAAKLLFQELMAMNITPRLYTDRSRDF 1224
>At4g21710 [K] KOG0214 RNA polymerase II second largest subunit
Length = 1188
Score = 1435 bits (3714), Expect = 0.0
Identities = 722/1201 (60%), Positives = 903/1201 (75%), Gaps = 51/1201 (4%)
Query: 25 WTVISAFFREKGLVSQQLDSFNQFINYTIQDLILEDSTLILEQLAQHTT--ETDNISRKY 82
W VISA+F EKGLV QQLDSF++FI T+Q+++ E + + + +QH ++D Y
Sbjct: 27 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETIY 86
Query: 83 EISFGKIYLAKPSMTESDGVSHAMYPQEARLRNLTYASGLFVEIQKRTYQAIDIPGRDLK 142
+ISFG+IYL+KP MTESDG + ++P+ ARLRNLTY++ L+V++ KR +K
Sbjct: 87 KISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRV----------IK 136
Query: 143 YXXXXXXXXXXXXXXXXFIGRVPIMLRSKYCLLDDLTESDLYRLKECPFDMGGYFIINGS 202
FIG+VPIMLRS YC L +E DL L ECP+D GGYFIINGS
Sbjct: 137 KGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFIINGS 196
Query: 203 EKVLIAQERSAGNIVQVFKKSAPSPISHIAEIRSALEKGSRFISTLQVKLYGRE----GS 258
EKVLIAQE+ + N V VFKK P+ +++ E+RS E +R ST+ V++ R GS
Sbjct: 197 EKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAENQNRPPSTMFVRMLARASAKGGS 256
Query: 259 TSRTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEEGFVI 318
+ + I+ TLPYI+ +IPI+I+FRALG + D +ILEHICYD D QM+E+L+P +EE FVI
Sbjct: 257 SGQYIRCTLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVI 316
Query: 319 QDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINR 378
Q++ ALD+IG+RG +G+ KEKRI+YA+DILQKE LPH+ E E++KA++ GY+I+R
Sbjct: 317 QNQLVALDYIGKRGATVGVTKEKRIKYARDILQKEMLPHVGIGEHCETKKAYYFGYIIHR 376
Query: 379 LLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRDILRFMQRSVEEAKDFNL 438
LLLCAL R+ +DDRDH+G KRLDLAGPLL LF+ LFRKLTRD+ ++Q+ V+ K+ NL
Sbjct: 377 LLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNL 436
Query: 439 KLAVKATTITAGLKYALATGNWGEQKKSMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGR 498
+ A+KA TIT+GLKY+LATGNWG Q + +RAGVSQVLNR TY+STLSHLRR N+PIGR
Sbjct: 437 QFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR 495
Query: 499 DGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPLPIITFLNEWGME 558
+GKLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I+VG+ PI+ FL EWG E
Sbjct: 496 EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE 555
Query: 559 PLEDYIPHQSPDATRVFVNGVWHGIHRNPAKLVDTIRKLRRKGDITPEVSIVRDIREKEL 618
E+ P P AT++FVNG+W G+HR+P LV T+R+LRR+ D+ EV +VRDIR KEL
Sbjct: 556 NFEEISPSVIPQATKIFVNGMWVGVHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKEL 615
Query: 619 KIFTDAGRVYRPLFIVDENPETGRKELKVKKGHVRKLMLTEYQDIEGGFDDEEEMNYTWT 678
+I+TD GR RPLFIVD ++L +KK + L E + +G W
Sbjct: 616 RIYTDYGRCSRPLFIVDN------QKLLIKKRDIYALQQRESAEEDG-----------WH 658
Query: 679 SLLNEGLVEYIDAEEEETILIAMQHEDLDPALLPVADSEDDLDPARRIRAIHNSNIFTHC 738
L+ +G +EYID EEEET +I+M DL A L R + N +THC
Sbjct: 659 HLVAKGFIEYIDTEEEETTMISMTISDLVQARL-------------RPEEAYTEN-YTHC 704
Query: 739 EIHPSMILGVAASVIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYYPQK 798
EIHPS+ILGV AS+IPFPDHNQSPRNTYQSAMGKQAMG+++TNY RMDT+A +LYYPQK
Sbjct: 705 EIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQK 764
Query: 799 PLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMD 858
PL TTRAME+L FR+LPAG NAIVAI+CYSGYNQEDS+IMNQSSIDRG FRSLFFRSY D
Sbjct: 765 PLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRD 824
Query: 859 QEKRIGMSITESFEKPHRTNTLRMKHGTYDKLDDDGLIAPGVRVSGDDMIIGKTTPIPPD 918
+EK++G + E F +P R +T+ M+HG+YDKLDDDGL PG RVSG+D+IIGKTTPI D
Sbjct: 825 EEKKMGTLVKEDFGRPDRGSTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD 884
Query: 919 AEELGQRTAFHSKRDASTPLRSTENGIVDQVLITTNQEGLKFVKVRVRTTKIPQIGDKFA 978
E GQ + + ++RD S LR +E G+VDQVL+TTN +GL+FVKVRVR+ +IPQIGDKF+
Sbjct: 885 -EAQGQSSRY-TRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFS 942
Query: 979 SRHGQKGTIGITYRTEDMPFTAEGVVPDLIINPHAIPSRMTVAHLIECLLSKVAALSGNE 1038
SRHGQKGT+G+TY EDMP+T EGV PD+I+NPHAIPSRMT+ LIEC++ KVAA G E
Sbjct: 943 SRHGQKGTVGMTYTQEDMPWTIEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE 1002
Query: 1039 GDASPFTDITVDGISRLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDD 1098
GDA+PFTD+TVD IS+ L + GYQ RGFE MYNGHTG+ L A IF GPTYYQRL+HMVDD
Sbjct: 1003 GDATPFTDVTVDNISKALHKCGYQMRGFERMYNGHTGRPLTAMIFLGPTYYQRLKHMVDD 1062
Query: 1099 KIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAAFLKERLMEASDAFRVH 1158
KIH+R RGP+Q+LTRQP EGRSRDGGLRFGEMERDCMIAHGAA FLKERL + SDA+RVH
Sbjct: 1063 KIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVH 1122
Query: 1159 ICGICGLMSVVAKLKHNQFECRSCKNKIDIYQVHIPYAAKLLFQELMAMNIAPRLYTDRS 1218
+C +CGL++ +A LK N FECR CKNK DI QV+IPYA KLLFQELM+M IAPR+ T
Sbjct: 1123 VCEVCGLIA-IANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQELMSMAIAPRMLTKHL 1181
Query: 1219 K 1219
K
Sbjct: 1182 K 1182
>Hs4505941 [K] KOG0214 RNA polymerase II second largest subunit
Length = 1174
Score = 1380 bits (3573), Expect = 0.0
Identities = 695/1197 (58%), Positives = 884/1197 (73%), Gaps = 60/1197 (5%)
Query: 25 WTVISAFFREKGLVSQQLDSFNQFINYTIQDLILEDSTLILEQLAQHTTETDNISRKYEI 84
W VIS++F EKGLV QQLDSF++FI ++Q ++ + + L+ AQH + +Y +
Sbjct: 27 WIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYLL 86
Query: 85 SFGKIYLAKPSMTESDGVSHAMYPQEARLRNLTYASGLFVEIQKRTYQAIDIPGRDLKYX 144
F +IYL+KP+ E DG M P EARLRNLTY++ L+V+I K + +
Sbjct: 87 KFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGE--------- 137
Query: 145 XXXXXXXXXXXXXXXFIGRVPIMLRSKYCLLDDLTESDLYRLKECPFDMGGYFIINGSEK 204
FIG++PIMLRS YCLL+ LT+ DL L ECP D GGYFIINGSEK
Sbjct: 138 -----EQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEK 192
Query: 205 VLIAQERSAGNIVQVFKKSAPSPISHIAEIRSALEKGSRFISTLQVKLYGREGSTSRT-- 262
VLIAQE+ A N V VF K S ++ E RS LE SR ST+ V + R G ++
Sbjct: 193 VLIAQEKMATNTVYVFAKK-DSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSA 251
Query: 263 ----IKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEEGFVI 318
I ATLPYIKQ++PI+I+FRALG + D +ILEHI YD D +M+EM+KP ++E FVI
Sbjct: 252 IGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVI 311
Query: 319 QDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINR 378
Q++ AL+FIG RG G+ KEKRI+YAK++LQKE LPH+ + E++KA+FLGYM++R
Sbjct: 312 QEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHR 371
Query: 379 LLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRDILRFMQRSVEEAKDFNL 438
LLL AL R++ DDRDH+G KRLDLAGPLLA LF+ +F+ L +++ + Q+ ++ KDFNL
Sbjct: 372 LLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNL 431
Query: 439 KLAVKATTITAGLKYALATGNWGEQKKSMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGR 498
+LA+K I+ GLKY+LATGNWG+QKK+ +RAGVSQVLNR T++STLSHLRR N+PIGR
Sbjct: 432 ELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGR 491
Query: 499 DGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPLPIITFLNEWGME 558
DGKLAKPRQLHNT WG+VCPAETPEG A GLVKNL+LM+ ISVG+ P PI+ FL EW ME
Sbjct: 492 DGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSME 551
Query: 559 PLEDYIPHQSPDATRVFVNGVWHGIHRNPAKLVDTIRKLRRKGDI-TPEVSIVRDIREKE 617
LE+ P DAT++FVNG W GIH++P +L++T+RKLRR+ DI EVS++RDIRE+E
Sbjct: 552 NLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIRERE 611
Query: 618 LKIFTDAGRVYRPLFIVDENPETGRKELKVKKGHVRKLMLTEYQDIEGGFDDEEEMNYTW 677
++I+TDAGR+ RPL IV+ +++L +KK H+ +L EY NY+W
Sbjct: 612 IRIYTDAGRICRPLLIVE------KQKLLLKKRHIDQLKEREYN------------NYSW 653
Query: 678 TSLLNEGLVEYIDAEEEETILIAMQHEDLDPALLPVADSEDDLDPARRIRAIHNSNIFTH 737
L+ G+VEYID EEET+++AM +DL + + + +TH
Sbjct: 654 QDLVASGVVEYIDTLEEETVMLAMTPDDLQE------------------KEVAYCSTYTH 695
Query: 738 CEIHPSMILGVAASVIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYYPQ 797
CEIHPSMILGV AS+IPFPDHNQSPRNTYQSAMGKQAMGV++TN++VRMDT+A++LYYPQ
Sbjct: 696 CEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQ 755
Query: 798 KPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYM 857
KPL TTR+MEYL+FRELPAG N+IVAIA Y+GYNQEDS+IMN+S++DRG FRS+F+RSY
Sbjct: 756 KPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYK 815
Query: 858 DQEKRIGMSITESFEKPHRTNTLRMKHGTYDKLDDDGLIAPGVRVSGDDMIIGKTTPIPP 917
+QE + G E FEKP R M+H YDKLDDDGLIAPGVRVSGDD+IIGKT +P
Sbjct: 816 EQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPE 875
Query: 918 DAEELGQRTAFHSKRDASTPLRSTENGIVDQVLITTNQEGLKFVKVRVRTTKIPQIGDKF 977
+ +EL ++KRD ST LR++E GIVDQV++T NQEG KF K+RVR+ +IPQIGDKF
Sbjct: 876 NEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKF 935
Query: 978 ASRHGQKGTIGITYRTEDMPFTAEGVVPDLIINPHAIPSRMTVAHLIECLLSKVAALSGN 1037
ASRHGQKGT GI YR EDMPFT EG+ PD+IINPHAIPSRMT+ HLIECL KV+A G
Sbjct: 936 ASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGE 995
Query: 1038 EGDASPFTD-ITVDGISRLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMV 1096
GDA+PF D + V IS LL ++GY RG EV+YNG TG+K+ +QIF GPTYYQRL+HMV
Sbjct: 996 IGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMV 1055
Query: 1097 DDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAAFLKERLMEASDAFR 1156
DDKIH+RARGP+Q+L RQP+EGRSRDGGLRFGEMERDC IAHGAA FL+ERL EASD ++
Sbjct: 1056 DDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQ 1115
Query: 1157 VHICGICGLMSVVAKLKHNQFECRSCKNKIDIYQVHIPYAAKLLFQELMAMNIAPRL 1213
VH+C +CG+M+ +A + + +ECR C+NK I V +PYA KLLFQELM+M+IAPR+
Sbjct: 1116 VHVCNLCGIMA-IANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRM 1171
>7299847 [K] KOG0214 RNA polymerase II second largest subunit
Length = 1176
Score = 1374 bits (3556), Expect = 0.0
Identities = 700/1198 (58%), Positives = 881/1198 (73%), Gaps = 61/1198 (5%)
Query: 25 WTVISAFFREKGLVSQQLDSFNQFINYTIQDLILEDSTLILEQLAQHTTETDNISRKYEI 84
W VI+A+F EKGLV QQLDSF++FI ++Q ++ + + L+ AQHT+ ++ +
Sbjct: 28 WIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVETPPRFSL 87
Query: 85 SFGKIYLAKPSMTESDGVSHAMYPQEARLRNLTYASGLFVEIQKRTYQAIDIPGRDLKYX 144
F +IYL+KP+ E DG M P EARLRNLTY++ L+V+I K ++ G D
Sbjct: 88 KFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTK----NVEGLD---- 139
Query: 145 XXXXXXXXXXXXXXXFIGRVPIMLRSKYCLLDDLTESDLYRLKECPFDMGGYFIINGSEK 204
FIG++PIMLRS YCLL LT+ DL L ECP D GGYFIINGSEK
Sbjct: 140 ------PVETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEK 193
Query: 205 VLIAQERSAGNIVQVFKKSAPSPISHIAEIRSALEKGSRFISTLQVKLYGR------EGS 258
VLIAQE+ A N V VF + EIRS LE SR STL V + R + +
Sbjct: 194 VLIAQEKMATNTVYVFSMK-DGKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKSA 252
Query: 259 TSRTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEEGFVI 318
+ I A LPYIKQ+IPI+I+FRALG + D +ILEHI YD +D +M+EM+KP ++E FV+
Sbjct: 253 IGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVV 312
Query: 319 QDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINR 378
Q++ AL+FIG RG G+ K+KRI+YAK+ILQKE LPH+ + E++KA+FLGYM++R
Sbjct: 313 QEQNVALNFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHR 372
Query: 379 LLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRDILRFMQRSVEEAKDFNL 438
LLL +L R++ DDRDH+G KRLDLAGPLLA LF+ LF+ L +++ + Q+ ++ KDFNL
Sbjct: 373 LLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDRGKDFNL 432
Query: 439 KLAVKATTITAGLKYALATGNWGEQKKSMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGR 498
+LA+K IT GL+Y+LATGNWG+QKK+ +RAGVSQVLNR T++STLSHLRR N+PIGR
Sbjct: 433 ELAIKTNIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGR 492
Query: 499 DGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPLPIITFLNEWGME 558
DGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+ P PI+ FL EW ME
Sbjct: 493 DGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSME 552
Query: 559 PLEDYIPHQSPDATRVFVNGVWHGIHRNPAKLVDTIRKLRRKGDI-TPEVSIVRDIREKE 617
LE+ P DAT++FVNG W GIHR+P +L+ T+RKLRR+ DI EVS++RDIR++E
Sbjct: 553 NLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDRE 612
Query: 618 LKIFTDAGRVYRPLFIVDENPETGRKELKVKKGHVRKLMLTEYQDIEGGFDDEEEMNYTW 677
++I+TDAGR+ RPL IV+ L +KK HV L +Y NY+W
Sbjct: 613 IRIYTDAGRICRPLLIVENG------SLLLKKTHVEMLKERDYN------------NYSW 654
Query: 678 TSLLNEGLVEYIDAEEEETILIAMQHEDLDPALLPVADSEDDLDPARRIRAIHNSNIFTH 737
L+ G+VEYID EEET++IAM DL + D D A +TH
Sbjct: 655 QVLVASGVVEYIDTLEEETVMIAMSPYDL----------KQDKDYAY-------CTTYTH 697
Query: 738 CEIHPSMILGVAASVIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYYPQ 797
CEIHP+MILGV AS+IPFPDHNQSPRNTYQSAMGKQAMGV++TN++VRMDT+A++LYYP
Sbjct: 698 CEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPM 757
Query: 798 KPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYM 857
KPL TTR+MEYL+FRELPAG N+IVAI CY+GYNQEDS+I+N S+++RG FRS+F+RSY
Sbjct: 758 KPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYK 817
Query: 858 DQE-KRIGMSITESFEKPHRTNTLRMKHGTYDKLDDDGLIAPGVRVSGDDMIIGKTTPIP 916
D E KR+G E+FEKPHR M++ YDKLDDDG+IAPG+RVSGDD++IGKT +P
Sbjct: 818 DSENKRVG-DQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVIGKTITLP 876
Query: 917 PDAEELGQRTAFHSKRDASTPLRSTENGIVDQVLITTNQEGLKFVKVRVRTTKIPQIGDK 976
+ +EL T SKRDAST LR++E GIVDQV++T N EG KF K+RVR+ +IPQIGDK
Sbjct: 877 ENDDELDSNTKRFSKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDK 936
Query: 977 FASRHGQKGTIGITYRTEDMPFTAEGVVPDLIINPHAIPSRMTVAHLIECLLSKVAALSG 1036
FASRHGQKGT GI YR EDM FT EG+ PD+IINPHAIPSRMT+ HLIECL K+ + G
Sbjct: 937 FASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNKG 996
Query: 1037 NEGDASPFTD-ITVDGISRLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHM 1095
GDA+PF D + V IS L+E+GY RG EVMYNGHTG+K+ AQ+F GPTYYQRL+HM
Sbjct: 997 EIGDATPFNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHM 1056
Query: 1096 VDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAAFLKERLMEASDAF 1155
VDDKIH+RARGP+Q+L RQP+EGR+RDGGLRFGEMERDC I+HGAA FL+ERL E SD +
Sbjct: 1057 VDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPY 1116
Query: 1156 RVHICGICGLMSVVAKLKHNQFECRSCKNKIDIYQVHIPYAAKLLFQELMAMNIAPRL 1213
RVHIC CGL++ +A L++N FEC+ CKNK I QV +PYAAKLLFQELM+MNIAPRL
Sbjct: 1117 RVHICNFCGLIA-IANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRL 1173
>CE01162 [K] KOG0214 RNA polymerase II second largest subunit
Length = 1193
Score = 1340 bits (3469), Expect = 0.0
Identities = 689/1197 (57%), Positives = 864/1197 (71%), Gaps = 61/1197 (5%)
Query: 25 WTVISAFFREKGLVSQQLDSFNQFINYTIQDLILEDSTLILEQLAQHTTETDNISRKYEI 84
W VISA+F EKGLV QQLDSF++F+ +Q ++ + + L+ QH K+ +
Sbjct: 34 WVVISAYFDEKGLVRQQLDSFDEFVQMNVQRIVEDSPPVELQSENQHLGTDMENPAKFSL 93
Query: 85 SFGKIYLAKPSMTESDGVSHAMYPQEARLRNLTYASGLFVEIQKRTYQAIDIPGRDLKYX 144
F +IYL+KP+ E DG M P EARLRNLTYAS L+V+I K + RD
Sbjct: 94 KFNQIYLSKPTHWEKDGAPMPMMPNEARLRNLTYASPLYVDITK-------VVTRD---- 142
Query: 145 XXXXXXXXXXXXXXXFIGRVPIMLRSKYCLLDDLTESDLYRLKECPFDMGGYFIINGSEK 204
F+G+VP+MLRS YC+L ++T+ DL L ECP D GGYF+INGSEK
Sbjct: 143 ----DSATEKVYDKVFVGKVPVMLRSSYCMLSNMTDRDLTELNECPLDPGGYFVINGSEK 198
Query: 205 VLIAQERSAGNIVQVFKKSAPSPISHIAEIRSALEKGSRFISTLQVKLYGREG------S 258
VLIAQE+ A N V VF + E RS LE SR ST+ V + R G +
Sbjct: 199 VLIAQEKMATNTVYVFSMK-DGKYAFKTECRSCLENSSRPTSTMWVNMLARGGGGGKKTA 257
Query: 259 TSRTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEEGFVI 318
+ I LPYIKQ+IPI+I+FRALG + D +IL HI YD ND +M+EM+KP ++E FVI
Sbjct: 258 MGQRIIGILPYIKQEIPIMIVFRALGFVSDRDILGHIIYDFNDPEMMEMVKPSLDEAFVI 317
Query: 319 QDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINR 378
Q++ AL+FIG RG G+ +E+RI+YA++ILQKE LPH+ E E++KAFF+GYM++R
Sbjct: 318 QEQNVALNFIGARGAKPGVTREQRIKYAREILQKELLPHVGVSEHCETKKAFFIGYMVHR 377
Query: 379 LLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRDILRFMQRSVEEAKDFNL 438
LLL AL R++ DDRDH G KRLDLAGPLLA LF++LFR L +++ Q+ + + DF L
Sbjct: 378 LLLAALGRRELDDRDHIGNKRLDLAGPLLAFLFRSLFRNLLKEMRMTAQKYINKNDDFAL 437
Query: 439 KLAVKATTITAGLKYALATGNWGEQKKSMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGR 498
+ VK +TIT GL Y+LATGNWG+QKK+ SRAGVSQVLNR TY++TLSHLRR N+PIGR
Sbjct: 438 DVCVKTSTITRGLTYSLATGNWGDQKKAHQSRAGVSQVLNRLTYTATLSHLRRANSPIGR 497
Query: 499 DGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPLPIITFLNEWGME 558
+GKLAKPRQLHNT WG+VCPAETPEGQA GLVKNL+LM+ ISVG+ P PI+ FL EW ME
Sbjct: 498 EGKLAKPRQLHNTQWGMVCPAETPEGQAVGLVKNLALMAYISVGSLPEPILEFLEEWSME 557
Query: 559 PLEDYIPHQSPDATRVFVNGVWHGIHRNPAKLVDTIRKLRRKGDI-TPEVSIVRDIREKE 617
LE+ P DAT++FVNG W GIHR P +L+ T++KLRR+ DI EVS+VRDIR++E
Sbjct: 558 NLEEVSPSAIADATKIFVNGAWVGIHREPDQLMTTLKKLRRQMDIIVSEVSMVRDIRDRE 617
Query: 618 LKIFTDAGRVYRPLFIVDENPETGRKELKVKKGHVRKLMLTEYQDIEGGFDDEEEMNYTW 677
++I+TDAGRV RPL IV+ ++L +KK H+ +L +E YTW
Sbjct: 618 IRIYTDAGRVCRPLLIVEN------QKLALKKRHIDQLKEAA----------DEANKYTW 661
Query: 678 TSLLNEGLVEYIDAEEEETILIAMQHEDLDPALLPVADSEDDLDPARRIRAIHNSNIFTH 737
+ L+ G+VE ID+ EEET +IAM EDL R+ + TH
Sbjct: 662 SDLVGGGVVELIDSMEEETSMIAMMPEDL--------------------RSGGYCDTHTH 701
Query: 738 CEIHPSMILGVAASVIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYYPQ 797
CEIHP+MILGV AS+IPFPDHNQSPRNTYQSAMGKQAMGV+ TN++VRMDT+A++LYYPQ
Sbjct: 702 CEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQ 761
Query: 798 KPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYM 857
KPL TTR+MEYL+F ELPAG NAIVAI YSGYNQEDS+IMN S+IDRGLFRS+F+RSY
Sbjct: 762 KPLVTTRSMEYLRFNELPAGINAIVAILSYSGYNQEDSVIMNNSAIDRGLFRSVFYRSYR 821
Query: 858 DQEKRIGMSITESFEKPHRTNTLRMKHGTYDKLDDDGLIAPGVRVSGDDMIIGKTTPIPP 917
D E + + E EKP R M+H YDKLD+DG+I+PG+RVSGDD+IIGKT +P
Sbjct: 822 DNEANLDNANEELIEKPTREKCSGMRHSLYDKLDEDGIISPGMRVSGDDVIIGKTVALPD 881
Query: 918 DAEELGQRTAFHSKRDASTPLRSTENGIVDQVLITTNQEGLKFVKVRVRTTKIPQIGDKF 977
++L + KRDAST LRS+E GIVDQV+++ N +G KFVK+R+R+ ++PQIGDKF
Sbjct: 882 IDDDLDASGKKYPKRDASTFLRSSETGIVDQVMLSLNSDGNKFVKIRMRSVRLPQIGDKF 941
Query: 978 ASRHGQKGTIGITYRTEDMPFTAEGVVPDLIINPHAIPSRMTVAHLIECLLSKVAALSGN 1037
ASRHGQKGT+GI YR EDMPFTAEG+ PD+IINPHA+PSRMT+ HLIECL K++A G
Sbjct: 942 ASRHGQKGTMGIMYRQEDMPFTAEGLTPDIIINPHAVPSRMTIGHLIECLQGKLSANKGE 1001
Query: 1038 EGDASPFTD-ITVDGISRLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMV 1096
GDA+PF D + V IS LL E+GY RG EVMYNGHTGKKL QIFFGPTYYQRL+HMV
Sbjct: 1002 IGDATPFNDTVNVQKISGLLCEYGYHLRGNEVMYNGHTGKKLTTQIFFGPTYYQRLKHMV 1061
Query: 1097 DDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAAFLKERLMEASDAFR 1156
DDKIH+RARGP+Q++ RQP+EGR+RDGGLRFGEMERDC I+HGA FL+ERL E SD +
Sbjct: 1062 DDKIHSRARGPIQMMNRQPMEGRARDGGLRFGEMERDCQISHGATQFLRERLFEVSDPYH 1121
Query: 1157 VHICGICGLMSVVAKLKHNQFECRSCKNKIDIYQVHIPYAAKLLFQELMAMNIAPRL 1213
V++C CGL+ VVA L+ N FEC++C+NK + V IPYA KLLFQELM+M+IAPRL
Sbjct: 1122 VYVCNNCGLI-VVANLRTNSFECKACRNKTQVSAVRIPYACKLLFQELMSMSIAPRL 1177
>ECU10g0250 [K] KOG0214 RNA polymerase II second largest subunit
Length = 1141
Score = 1325 bits (3429), Expect = 0.0
Identities = 670/1190 (56%), Positives = 871/1190 (72%), Gaps = 64/1190 (5%)
Query: 25 WTVISAFFREKGLVSQQLDSFNQFINYTIQDLILEDSTLILEQLAQHTTETDNISRKYEI 84
W++IS+FF +KGLV QQLDSF+QF+ +Q++I E +I++ ET ++ +
Sbjct: 11 WSIISSFFEQKGLVRQQLDSFDQFVKTKMQEVINESPVIIVQSAPTAGIETQ---KRIAV 67
Query: 85 SFGKIYLAKPSM-TESDGVSHAMYPQEARLRNLTYASGLFVEIQKRTYQAIDIPGRDLKY 143
FG+IY++KP + TESDG + ++P EAR+R+LTYAS LF+++ K T + + + KY
Sbjct: 68 RFGQIYVSKPPVYTESDGRTITVFPNEARIRDLTYASPLFIDVTKETLSELGVVDKH-KY 126
Query: 144 XXXXXXXXXXXXXXXXFIGRVPIMLRSKYCLLDDLTESDLYRLKECPFDMGGYFIINGSE 203
G +P+MLRS YC+L L + DL L ECP+D GGYFI+NGSE
Sbjct: 127 SRVP-------------FGSLPVMLRSSYCVLYGLGDKDLIDLGECPYDQGGYFIVNGSE 173
Query: 204 KVLIAQERSAGNIVQVFKKSAPSPISHIAEIRSALEKGSRFISTLQVKLYGREGSTSRTI 263
KV++AQER A N V VFKK+ P+ +H AEIRS EK SR STL +KL G I
Sbjct: 174 KVIVAQERMASNTVYVFKKAQPATYTHYAEIRSVPEKSSRNPSTLSMKLCRSPG----VI 229
Query: 264 KATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEEGFVIQDRET 323
+ +LP +KQD+P+ +++RALG + D EI++HI Y+ +D +M E+LK +EEG V+QD+
Sbjct: 230 RVSLPLVKQDVPLFVLYRALGFLSDKEIIDHILYE-DDEEMFELLKESIEEGTVVQDQNV 288
Query: 324 ALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLLLCA 383
ALD+IG+R +G +EKRI AKD+L KE LPHI E E++KA+F+GY++ RLLL A
Sbjct: 289 ALDYIGKRSAPIGTPQEKRIVMAKDLLAKEVLPHIGTQEFCETKKAYFIGYIVQRLLLVA 348
Query: 384 LDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRDILRFMQRSVEEAKDFNLKLAVK 443
L R++ DDRDH+GKKR+DL+GPLLA LF+TLF+KL D R MQ+ +E ++FN+ L +K
Sbjct: 349 LGRRNPDDRDHYGKKRMDLSGPLLASLFRTLFKKLCVDTTRHMQKCIENGREFNIALGLK 408
Query: 444 ATTITAGLKYALATGNWGEQKKSMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKLA 503
A+ IT G +YALATGNWG+Q K+M +RAGV+QVLNRY + STLSHLRR NTPI ++GKLA
Sbjct: 409 ASIITQGFRYALATGNWGDQAKAMQTRAGVAQVLNRYNFVSTLSHLRRVNTPIEKEGKLA 468
Query: 504 KPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPLPIITFLNEWGMEPLEDY 563
PRQLHNTHWG+VCPAETPEGQACGLVKNLSLM+ ISVG+ P++ FL E G+E LE+
Sbjct: 469 APRQLHNTHWGMVCPAETPEGQACGLVKNLSLMAYISVGSSSGPLVEFLEECGVESLEEI 528
Query: 564 IPHQSPDATRVFVNGVWHGIHRNPAKLVDTIRKLRRKGDITPEVSIVRDIREKELKIFTD 623
Q AT++FVNGVW GIH +P L+ +++ LRR ++ EVSIVRDIREKE+++ +D
Sbjct: 529 STSQLDAATKIFVNGVWVGIHSDPVGLIKSLKLLRRSLEMDKEVSIVRDIREKEIRVQSD 588
Query: 624 AGRVYRPLFIVDENPETGRKELKVKKGHVRKLMLTEYQDIEGGFDDEEEMNYTWTSLLNE 683
AGR RPL +V +N +L + +RKL E + W +L+
Sbjct: 589 AGRPCRPLLVVKDN------KLVITAEDIRKLKRGEIK---------------WDNLVTS 627
Query: 684 GLVEYIDAEEEETILIAMQHEDLDPALLPVADSEDDLDPARRIRAIHNSNIFTHCEIHPS 743
G +E++D EEEE +IAM + L D +R + S +THCEIHP+
Sbjct: 628 GFIEFLDVEEEEMSMIAMNTKIL-------------ADESRNSSDVSVS--YTHCEIHPA 672
Query: 744 MILGVAASVIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYYPQKPLGTT 803
+ILG+ AS IPFPDHNQSPRNTYQSAMGKQAMG++ TN+ +RMDT++NIL+YPQKPL TT
Sbjct: 673 LILGICASTIPFPDHNQSPRNTYQSAMGKQAMGIYATNFLLRMDTLSNILFYPQKPLVTT 732
Query: 804 RAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKRI 863
++MEYL+F+ELP+GQNA+VAIACYSGYNQEDS+IMNQS+IDRGLFRS F+R+Y DQE
Sbjct: 733 KSMEYLRFKELPSGQNALVAIACYSGYNQEDSIIMNQSAIDRGLFRSFFYRTYTDQESMS 792
Query: 864 GMSITESFEKPHRTNTLRMKHGTYDKLDDDGLIAPGVRVSGDDMIIGKTTPIPPDAEELG 923
+ E F KP R LRMK+ Y+KLDDDGLI+PG RV+GDD++IGK TPI D E
Sbjct: 793 RPGVNEEFCKPSRGAVLRMKNLNYNKLDDDGLISPGTRVTGDDVLIGKITPI-LDPERST 851
Query: 924 QRTAFHSKRDASTPLRSTENGIVDQVLITTNQEGLKFVKVRVRTTKIPQIGDKFASRHGQ 983
+ + +D+ST +R TE GIVD V++ TN++G KF KV+VR+ +IPQ+GDKFASRH Q
Sbjct: 852 KEAPVYVYKDSSTAMRRTETGIVDTVIV-TNKDGYKFSKVKVRSGRIPQMGDKFASRHAQ 910
Query: 984 KGTIGITYRTEDMPFTAEGVVPDLIINPHAIPSRMTVAHLIECLLSKVAALSGNEGDASP 1043
KGTIGIT R EDMPFT+EG+VPD+IINPHAIPSRMT+ HLIECLL KV+A+SG EGDA+P
Sbjct: 911 KGTIGITLRQEDMPFTSEGIVPDIIINPHAIPSRMTIGHLIECLLGKVSAMSGEEGDATP 970
Query: 1044 FTDITVDGISRLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHAR 1103
F+ +TVDGIS L+ +G+Q RG EVMYNG TG+KL AQ+FFGPTYYQRL+HMVDDKIHAR
Sbjct: 971 FSGVTVDGISSRLKSYGFQQRGLEVMYNGMTGRKLRAQMFFGPTYYQRLKHMVDDKIHAR 1030
Query: 1104 ARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAAFLKERLMEASDAFRVHICGIC 1163
ARGP+Q+LTRQPVEGRSRDGGLRFGEMERDC+I+HGA+AFLKERLM+ SDA+ ++C C
Sbjct: 1031 ARGPLQILTRQPVEGRSRDGGLRFGEMERDCIISHGASAFLKERLMDVSDAYSCYVCDFC 1090
Query: 1164 GLMSVVAKLKHNQFECRSCKNKIDIYQVHIPYAAKLLFQELMAMNIAPRL 1213
GL+++ + EC+ C N ++ V IPYA KLL QELM MNIAPR+
Sbjct: 1091 GLLAMGGSKVN---ECKGCNNTTNVSMVEIPYAFKLLIQELMGMNIAPRI 1137
>SPAC23G3.01 [K] KOG0214 RNA polymerase II second largest subunit
Length = 728
Score = 914 bits (2361), Expect = 0.0
Identities = 445/716 (62%), Positives = 582/716 (81%), Gaps = 15/716 (2%)
Query: 25 WTVISAFFREKGLVSQQLDSFNQFINYTIQDLILEDSTLILEQLAQHTTETDNISRKYEI 84
WTVIS+FF E L QQL SF++F+ T+Q+++ +DSTL L+Q AQHT +++R+YEI
Sbjct: 18 WTVISSFFEETSLARQQLFSFDEFVQNTMQEIVDDDSTLTLDQYAQHTGAQGDVTRRYEI 77
Query: 85 SFGKIYLAKPSMTESDGVSHAMYPQEARLRNLTYASGLFVEIQKRTYQAID--IPGRDLK 142
+FG+IYL++P+MTE+DG + M+PQEARLRNLTY+S L+V+++K+ A D +P + +
Sbjct: 78 NFGQIYLSRPTMTEADGSTTTMFPQEARLRNLTYSSPLYVDMRKKVMVAADSNVPIGEEE 137
Query: 143 YXXXXXXXXXXXXXXXXFIGRVPIMLRSKYCLLDDLTESDLYRLKECPFDMGGYFIINGS 202
+ FIG++PIMLRS +C+L+ +++S+LY L ECP+D GGYFIINGS
Sbjct: 138 WLVEEEDEEPSKV----FIGKIPIMLRSTFCILNGVSDSELYDLNECPYDQGGYFIINGS 193
Query: 203 EKVLIAQERSAGNIVQVFKKSAPSPISHIAEIRSALEKGSRFISTLQVKLYGREGSTS-R 261
EKV+IAQERSA NIVQVFKK+APSPI+++AEIRSALE+GSR IS++Q+KL R S +
Sbjct: 194 EKVIIAQERSAANIVQVFKKAAPSPIAYVAEIRSALERGSRLISSMQIKLMARNTENSGQ 253
Query: 262 TIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEEGFVIQDR 321
TI+ATLPYI+ DIPIVI+FRALG++PD +ILEHICYD ND+QMLEM+KPC+EE FVIQD+
Sbjct: 254 TIRATLPYIRSDIPIVIVFRALGVVPDRDILEHICYDPNDFQMLEMMKPCIEEAFVIQDK 313
Query: 322 ETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLLL 381
+ ALD+IG+RG+ G+ +EKR++YA DILQKE LPHIT +EGFE+RKAFFLGYMI+R+LL
Sbjct: 314 DIALDYIGKRGSTTGVTREKRLRYAHDILQKELLPHITTMEGFETRKAFFLGYMIHRMLL 373
Query: 382 CALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRDILRFMQRSVEEAKDFNLKLA 441
CAL+R++ DDRDHFGKKRLDLAGPLLA LF+ LFRK+TRD+ ++MQ+ VE ++FNL LA
Sbjct: 374 CALERREPDDRDHFGKKRLDLAGPLLASLFRMLFRKMTRDVYKYMQKCVETNREFNLTLA 433
Query: 442 VKATTITAGLKYALATGNWGEQKKSMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGK 501
VK+ IT GL+Y+LATGNWG+QK+SM +R GVSQVLNRYT++STLSHLRRTNTPIGRDGK
Sbjct: 434 VKSNIITNGLRYSLATGNWGDQKRSMVNRVGVSQVLNRYTFASTLSHLRRTNTPIGRDGK 493
Query: 502 LAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPLPIITFLNEWGMEPLE 561
LAKPRQLHNTHWG+VCPAETPEGQACGLVKNLSLMS +SVG+ PII FL EWG+E LE
Sbjct: 494 LAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYVSVGSPSAPIIEFLEEWGLETLE 553
Query: 562 DYIPHQSPDATRVFVNGVWHGIHRNPAKLVDTIRKLRRKGDITPEVSIVRDIREKELKIF 621
DY P SP+AT+VFVNGVW G+HR+PA L +T+R LRR+ DI+ EVSIVRDIREKEL++F
Sbjct: 554 DYNPSASPNATKVFVNGVWLGVHRDPAHLTETLRSLRRRLDISAEVSIVRDIREKELRLF 613
Query: 622 TDAGRVYRPLFIVDENPETGRK-ELKVKKGHVRKLMLTEYQDIEGGFDDEEEMNYTWTSL 680
TDAGR+ RPLFIVD NP + R+ EL ++K H+++L+ + + +D + E + WT+L
Sbjct: 614 TDAGRICRPLFIVDNNPNSERRGELCIRKEHIQQLI-----EDKDRYDIDPEQRFGWTAL 668
Query: 681 LNEGLVEYIDAEEEETILIAMQHEDLDPALLPVADSE--DDLDPARRIRAIHNSNI 734
++ GL+EY+DAEEEET++IAM EDL+ + A E ++LDPA+R++ N ++
Sbjct: 669 VSSGLIEYLDAEEEETVMIAMSPEDLEASRQMQAGYEVKEELDPAQRVKPAPNPHV 724
>SPAC4G9.08c [K] KOG0215 RNA polymerase III second largest subunit
Length = 1165
Score = 735 bits (1898), Expect = 0.0
Identities = 451/1214 (37%), Positives = 668/1214 (54%), Gaps = 132/1214 (10%)
Query: 25 WTVISAFFREKGLVSQQLDSFNQFINYTIQDLILEDSTLILEQLAQHTTETDNISRKYEI 84
W ++ AF + KGLV Q LDS+N F++ ++ ++ + + T ++ + +
Sbjct: 51 WQLLPAFLKVKGLVKQHLDSYNYFVDVDLKKIVQANEKV-----------TSDVEPWFYL 99
Query: 85 SFGKIYLAKPSMTESDGVSHAMYPQEARLRNLTYASGLFVEIQ----KRTYQAIDIPGRD 140
+ I + P T++D + ++ P E RLR+LTY + ++V+I+ K+ + ++P
Sbjct: 100 KYLDIRVGAPVRTDADAIQASISPHECRLRDLTYGANIYVDIEYTRGKQVVRRRNVP--- 156
Query: 141 LKYXXXXXXXXXXXXXXXXFIGRVPIMLRSKYCLLDDLTESDLYRLKECPFDMGGYFIIN 200
IGR+P+MLRS C+L E ++ L ECP D GGYFI+
Sbjct: 157 --------------------IGRMPVMLRSNKCVLSGKNEMEMAALNECPLDPGGYFIVK 196
Query: 201 GSEKVLIAQERSAGNIVQVFKKSAPSPISHIAEIRSALE--KGSRFISTLQVKLYGREGS 258
G+EKV++ QE+ + N ++ ++ P A + S+ K ++ T KLY + S
Sbjct: 197 GTEKVILVQEQLSKN--RIIVEAEPKKGLWQASVTSSTHERKSKTYVITKNGKLYLKHNS 254
Query: 259 TSRTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEE--GF 316
+ DIPIV++ +A+G+ D EI E + +Q ++ P +EE
Sbjct: 255 -----------VADDIPIVVVLKAMGLQSDQEIFELVAGAEASYQ--DLFAPSIEECAKL 301
Query: 317 VIQDRETALDFIGRR---GTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLG 373
I + AL++IG R G + + A ++L L HI KA ++G
Sbjct: 302 NIYTAQQALEYIGARVKVNRRAGANRLPPHEEALEVLAAVVLAHINVFNLEFRPKAVYIG 361
Query: 374 YMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRDILRFMQRSVEE- 432
M R+L+ +D DDRD+ G KRL+LAG LLA LF+ LF+K D+ + + +++
Sbjct: 362 IMARRVLMAMVDPLQVDDRDYVGNKRLELAGQLLALLFEDLFKKFNSDLKLNIDKVLKKP 421
Query: 433 --AKDFNL--KLAVKATTITAGLKYALATGNWGEQKKSMSSRAGVSQVLNRYTYSSTLSH 488
++F+ +L V + IT G+ AL+TGNW ++ M RAGV+ VL+R +Y S L
Sbjct: 422 HRTQEFDAYNQLTVHSDHITQGMVRALSTGNWSLKRFKME-RAGVTHVLSRLSYISALGM 480
Query: 489 LRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPLPI 548
+ R + + K++ PR L + +G++C ++TPEG+ACGLVKNL+LM+ I+ + PI
Sbjct: 481 MTRITSQFEKTRKVSGPRSLQASQFGMLCTSDTPEGEACGLVKNLALMTHITTDEEEEPI 540
Query: 549 ITFLNEWGMEPLEDYIPHQ--SPDATRVFVNGVWHGIHRNPAKLVDTIRKLRRKGDITPE 606
I +G+E + + S V++NG GI R P+ V + RKLRR G I+P
Sbjct: 541 IKLAYAFGIEDIHVISGRELHSHGTYLVYLNGAILGISRYPSLFVASFRKLRRSGKISPF 600
Query: 607 VSIVRDIREKELKIFTDAGRVYRPLFIVDENPETGRKELKVKKGHVRKLMLTEYQDIEGG 666
+ I + ++ + I TD GR+ RPL IV KV+ H+R L ++ + G
Sbjct: 601 IGIFINTHQRAVFISTDGGRICRPLIIVQNGLP------KVESKHIRLL-----KEGKWG 649
Query: 667 FDDEEEMNYTWTSLLNEGLVEYIDAEEEETILIAMQHEDLDPALLPVADSEDDLDPARRI 726
F+D L +GLVEY+D EE LI++ D+ P
Sbjct: 650 FED----------FLKQGLVEYVDVNEENDSLISVYERDITPDT---------------- 683
Query: 727 RAIHNSNIFTHCEIHPSMILGVAASVIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRM 786
TH EI P ILG A +IP+P HNQSPRNTYQ AMGKQA+G N R+
Sbjct: 684 ---------THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLQRI 734
Query: 787 DTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRG 846
DT+ ++ YPQ+P+ T+ +E + + +LPAGQNA VAI YSGY+ ED++++N+SSIDRG
Sbjct: 735 DTLLYLMVYPQQPMVKTKTIELIGYDKLPAGQNATVAIMSYSGYDIEDALVLNKSSIDRG 794
Query: 847 LFRSLFFRSYMDQEKRIGMSITESFEKPHR---TNTLRMKHGTYDKLDDDGLIAPGVRVS 903
R F + ++ + P R T + KHG ++DDGL G RV
Sbjct: 795 FGRCQVFHKHSVIVRKYPNGTHDRIGDPQRDPETGEVVWKHGV---VEDDGLAGVGCRVQ 851
Query: 904 GDDMIIGKTTPIPP--DAEELGQRTAFHSKRDASTPL--RSTENGIVDQVLITTNQEGLK 959
+ + K TP ++ LG S A TP+ ++ E G +D+V++TT
Sbjct: 852 PGQIYVNKQTPTNALDNSITLGHTQTVESGYKA-TPMTYKAPEPGYIDKVMLTTTDSDQT 910
Query: 960 FVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRTEDMPFTAEGVVPDLIINPHAIPSRMT 1019
+KV +R T+ P++GDKF+SRHGQKG G+ + EDMPF +G+ PD+I+NPH PSRMT
Sbjct: 911 LIKVLMRQTRRPELGDKFSSRHGQKGVCGVIVQQEDMPFNDQGICPDIIMNPHGFPSRMT 970
Query: 1020 VAHLIECLLSKVAALSGNEGDASPFTDITVDGISRLLREHGYQSRGFEVMYNGHTGKKLM 1079
V +IE L KV L G + F V+ SR+L EHGY G +++ +G TG+ L
Sbjct: 971 VGKMIELLSGKVGVLRGTLEYGTCFGGTKVEDASRILVEHGYNYSGKDMLTSGITGETLE 1030
Query: 1080 AQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHG 1139
A IF GP YYQ+L+HMV DK+HARARGP VLTRQP EGRSRDGGLR GEMERDC+IA+G
Sbjct: 1031 AYIFMGPIYYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIAYG 1090
Query: 1140 AAAFLKERLMEASDAFRVHICGICGLMSVVAKLKHNQFECRSCKNKIDIYQVHIPYAAKL 1199
A+ L ERLM +SDA V +CG CGL+ + C SC++ ++ ++ IPYAAKL
Sbjct: 1091 ASQLLLERLMISSDACDVDVCGQCGLLGY-------KGWCNSCQSTREVVKMTIPYAAKL 1143
Query: 1200 LFQELMAMNIAPRL 1213
LFQEL++MNI PRL
Sbjct: 1144 LFQELLSMNIVPRL 1157
>YOR207c [K] KOG0215 RNA polymerase III second largest subunit
Length = 1149
Score = 714 bits (1843), Expect = 0.0
Identities = 440/1201 (36%), Positives = 662/1201 (54%), Gaps = 116/1201 (9%)
Query: 25 WTVISAFFREKGLVSQQLDSFNQFINYTIQDLILEDSTLILEQLAQHTTETDNISRKYEI 84
W ++ AF + KGLV Q LDSFN F++ ++ +I + ++ ++ ++ +
Sbjct: 45 WHLLPAFLKVKGLVKQHLDSFNYFVDTDLKKIIKANQLIL-----------SDVDPEFYL 93
Query: 85 SFGKIYLAKPSMTESDGVSHAMYPQEARLRNLTYASGLFVEIQKRTYQAIDIPGRDLKYX 144
+ I + K S + + + P E RLR++TY++ ++V+I+ + I I +D++
Sbjct: 94 KYVDIRVGKKSSSSTK--DYLTPPHECRLRDMTYSAPIYVDIEYTRGRNI-IMHKDVE-- 148
Query: 145 XXXXXXXXXXXXXXXFIGRVPIMLRSKYCLLDDLTESDLYRLKECPFDMGGYFIINGSEK 204
IGR+PIMLRS C+L D ES + +L ECP D GGYFI+NG+EK
Sbjct: 149 ----------------IGRMPIMLRSNKCILYDADESKMAKLNECPLDPGGYFIVNGTEK 192
Query: 205 VLIAQERSAGNIVQVFKKSAPSPISHIAEIRSALEKGSRFISTLQVKLYGREGSTSRTIK 264
V++ QE+ + N + V + + K ++ T K+Y + S
Sbjct: 193 VILVQEQLSKNRIIVEADEKKGIVQASVTSSTHERKSKTYVITKNGKIYLKHNS------ 246
Query: 265 ATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEEGFVIQDRETA 324
I ++IPI I+ +A GI+ D EI++ +C + + +Q + + I ++ A
Sbjct: 247 -----IAEEIPIAIVLKACGILSDLEIMQLVCGNDSSYQDIFAVNLEESSKLDIYTQQQA 301
Query: 325 LDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESR-KAFFLGYMINRLLLCA 383
L++IG + + +K +Q + + + H+T +E + R KA ++ M R+++
Sbjct: 302 LEYIGAKVKTMRRQKLTILQEGIEAIATTVIAHLT-VEALDFREKALYIAMMTRRVVMAM 360
Query: 384 LDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRD-------ILRFMQRSVEEAKDF 436
+ K DDRD+ G KRL+LAG L++ LF+ LF+K D +L+ R++E D
Sbjct: 361 YNPKMIDDRDYVGNKRLELAGQLISLLFEDLFKKFNNDFKLSIDKVLKKPNRAMEY--DA 418
Query: 437 NLKLAVKATTITAGLKYALATGNWGEQKKSMSSRAGVSQVLNRYTYSSTLSHLRRTNTPI 496
L + V + IT+GL A++TGNW ++ M RAGV+ VL+R +Y S L + R ++
Sbjct: 419 LLSINVHSNNITSGLNRAISTGNWSLKRFKME-RAGVTHVLSRLSYISALGMMTRISSQF 477
Query: 497 GRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPLPIITFLNEWG 556
+ K++ PR L + +G++C A+TPEG+ACGLVKNL+LM+ I+ + PI G
Sbjct: 478 EKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPIKKLCYVLG 537
Query: 557 MEPLEDYIPHQSPDATRVFVNGVWHGIHRNPAKLVDTIRKLRRKGDITPEVSIVRDIREK 616
+E + V++NG G R P K V R LRR G ++ +SI + +
Sbjct: 538 VEDITLIDSASLHLNYGVYLNGTLIGSIRFPTKFVTQFRHLRRTGKVSEFISIYSNSHQM 597
Query: 617 ELKIFTDAGRVYRPLFIVDENPETGRKELKVKKGHVRKLMLTEYQDIEGGFDDEEEMNYT 676
+ I TD GR+ RPL IV + + +VK H+RKL+ D E FDD
Sbjct: 598 AVHIATDGGRICRPLIIVSDG------QSRVKDIHLRKLL-----DGELDFDD------- 639
Query: 677 WTSLLNEGLVEYIDAEEEETILIAMQHEDLDPALLPVADSEDDLDPARRIRAIHNSNIFT 736
L GLVEY+D EE IA+ +D+ P++ T
Sbjct: 640 ---FLKLGLVEYLDVNEENDSYIALYEKDIVPSM-------------------------T 671
Query: 737 HCEIHPSMILGVAASVIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYYP 796
H EI P ILG A +IP+P HNQSPRNTYQ AMGKQA+G N R+DT+ ++ YP
Sbjct: 672 HLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMTYP 731
Query: 797 QKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSY 856
Q+P+ T+ +E + + +LPAGQNA VA+ YSGY+ ED++++N+SSIDRG R R
Sbjct: 732 QQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRKT 791
Query: 857 MDQEKRIGMSITESFEKPHRTNTLRMKHGTYDKLDDDGLIAPGVRVSGDDMIIGKTTPI- 915
KR + T+ R + + L DGL G++V + I K+ P
Sbjct: 792 TTVLKRYA-NHTQDIIGGMRVDENGDPIWQHQSLGPDGLGEVGMKVQSGQIYINKSVPTN 850
Query: 916 ---PPDAEELGQRTAFHSKRDASTPLRSTENGIVDQVLITTNQEGLKFVKVRVRTTKIPQ 972
P+ + +T + R+A R E +DQV+++ + +KV +R + P+
Sbjct: 851 SADAPNPNNVNVQTQY---REAPVIYRGPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPE 907
Query: 973 IGDKFASRHGQKGTIGITYRTEDMPFTAEGVVPDLIINPHAIPSRMTVAHLIECLLSKVA 1032
+GDKF+SRHGQKG GI + EDMPF +G+VPD+I+NPH PSRMTV +IE + K
Sbjct: 908 LGDKFSSRHGQKGVCGIIVKQEDMPFNDQGIVPDIIMNPHGFPSRMTVGKMIELISGKAG 967
Query: 1033 ALSGNEGDASPFTDITVDGISRLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRL 1092
L+G + F ++ +S++L + G+ G +++Y+G TG+ L A IFFGP YYQ+L
Sbjct: 968 VLNGTLEYGTCFGGSKLEDMSKILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKL 1027
Query: 1093 RHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAAFLKERLMEAS 1152
+HMV DK+HARARGP VLTRQP EGRSRDGGLR GEMERDC+IA+GA+ L ERLM +S
Sbjct: 1028 KHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISS 1087
Query: 1153 DAFRVHICGICGLMSVVAKLKHNQFECRSCKNKIDIYQVHIPYAAKLLFQELMAMNIAPR 1212
DAF V +C CGLM C +CK+ +I ++ IPYAAKLLFQEL++MNIAPR
Sbjct: 1088 DAFEVDVCDKCGLMGYSG-------WCTTCKSAENIIKMTIPYAAKLLFQELLSMNIAPR 1140
Query: 1213 L 1213
L
Sbjct: 1141 L 1141
>CE00690 [K] KOG0215 RNA polymerase III second largest subunit
Length = 1207
Score = 692 bits (1785), Expect = 0.0
Identities = 419/1215 (34%), Positives = 647/1215 (52%), Gaps = 122/1215 (10%)
Query: 25 WTVISAFFREKGLVSQQLDSFNQFINYTIQDLILEDSTLILEQLAQHTTETDNISRKYEI 84
W ++ AF + +GLV Q L SF+ F+ I+ ++L + + T + + + +
Sbjct: 82 WLLVPAFLKVRGLVKQHLVSFDHFVQEEIRSIMLSNQKI-----------TSDANPNFYL 130
Query: 85 SFGKIYLAKPSMTESDGVSH-AMYPQEARLRNLTYASGLFVEIQKRTYQAIDIPGRDLKY 143
+ I + KPS E ++H + PQE RLR++TY++ + V+I+ T + +DL
Sbjct: 131 KYLDIRIGKPSSEEGLNMTHDKITPQECRLRDMTYSAPISVDIEY-TRGNQRVFKKDL-- 187
Query: 144 XXXXXXXXXXXXXXXXFIGRVPIMLRSKYCLLDDLTESDLYRLKECPFDMGGYFIINGSE 203
IGR+PIMLRS C+L DL E +L R++ECP+D GGYF++ GSE
Sbjct: 188 ----------------IIGRMPIMLRSSKCILRDLAEEELARVQECPYDPGGYFVVKGSE 231
Query: 204 KVLIAQERSAGNIVQVFKKSAPSPISHIAEIRSALEKGSRFISTLQVKLYGREGSTSRTI 263
KV++ QE+ + N + V + S+ + + S E+ S+ T++ Y +
Sbjct: 232 KVILIQEQLSKNRIMVGRNSSKELQCEV--LSSTSERKSKTYVTMKKGKYSVRHNQ---- 285
Query: 264 KATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQML-EMLKPCVEEGFVIQDRE 322
+ D+P+ IIF+A+G+ D +I+ I ++ + L+ + G Q +
Sbjct: 286 ------LTDDVPVSIIFKAMGVESDFDIVSTIGHEEKYVSAFAQTLEESINAGVYTQQQA 339
Query: 323 TAL-----------DFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFF 371
A F GT++ + + A D L + HI +G KA +
Sbjct: 340 LAYVTSKVKARKFTPFGSLPGTSVSVLTPPKEHEAVDFLSNSMITHIACPDGNFKMKAIY 399
Query: 372 LGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRDILRFMQRSVE 431
LG M RL+ L DDRD +G KRL+LAG LL+ LF+ +F++ ++ R ++
Sbjct: 400 LGLMTRRLIQTELGENGLDDRDFYGNKRLELAGSLLSLLFEDVFKRFNSELKRIADNALM 459
Query: 432 E--AKDFNLKLAVKATTITAGLKYALATGNWGEQKKSMSSRAGVSQVLNRYTYSSTLSHL 489
+ A ++ ++ IT + A++TGNW ++ M R GV+QVL+R +Y S L +
Sbjct: 460 KTMAAPLDIVKHMRQDMITNTIVNAMSTGNWIIKRFRME-RLGVTQVLSRLSYISALGMM 518
Query: 490 RRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPLPII 549
R N+ + K++ PR L + WG++CP++TPEG+ACGLVKNL+L+S I+ +D P++
Sbjct: 519 TRINSTFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALISHITTDSDEKPVL 578
Query: 550 TFLNEWGMEPLED-YIPH-QSPDATRVFVNGVWHGIHRNPAKLVDTIRKLRRKGDITPEV 607
L G+E L + + H P+ T +F+NGV G +P ++V +R LRR G ++ V
Sbjct: 579 RLLLNSGVEDLHNVHFSHVNKPENTLIFLNGVLIGTAVDPERVVKAVRDLRRSGLLSEFV 638
Query: 608 SIVRDIREKELKIFTDAGRVYRPLFIVDENPETGRKELKVKKGHVRKLMLTEYQDIEGGF 667
S+ R + + + I +D GR+ RP IV + + HV++L
Sbjct: 639 SVSRSLTNRSVFISSDGGRLCRPYIIVKNGTPM------LTQAHVQEL------------ 680
Query: 668 DDEEEMNYTWTSLLNEGLVEYIDAEEEETILIAMQHEDLDPALLPVADSEDDLDPARRIR 727
+E + +++G+VEY+D E LIA+ ++ P
Sbjct: 681 ---KEGKMIFEDFVDDGIVEYLDVNEMNDALIAVYGREIGPET----------------- 720
Query: 728 AIHNSNIFTHCEIHPSMILGVAASVIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMD 787
TH EI P +LGV A +IP+P HNQSPRNTYQ AMGKQAMG N R+D
Sbjct: 721 --------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIAYNQQKRID 772
Query: 788 TMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGL 847
++ +L YPQ+PL ++ +E F +LPAG N I+A+ YSGY+ ED++++N++S+DRG
Sbjct: 773 SIMYLLCYPQRPLVKSKTIELTNFEKLPAGANGIIAVMSYSGYDIEDALVLNKASLDRGY 832
Query: 848 FRSLFFRSYMDQEKRIGMSITESFEKPHRTNTLRMKHGTYDKLDDDGLIAPGVRVSGDDM 907
R L ++ K+ + P R + LD +G++ G R+
Sbjct: 833 GRCLVYKHVKGTAKKYPNQTFDRLLGPALDPNTRKPIFKHKNLDQEGIVFAGARIMPKQT 892
Query: 908 IIGKTTPI---------PPDAEELGQRTAFHSKRDASTPLRSTENGIVDQVLITTNQEGL 958
II K P+ A +G +D S ++ ++VL+T N++
Sbjct: 893 IINKHMPVVSGESGPGASASANTIGIAGRQVDYKDVSITYKTPTPSYAERVLLTYNEDEA 952
Query: 959 KFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRTEDMPFTAEGVVPDLIINPHAIPSRM 1018
KV +R T+ P++GDKF+SRHGQKG G+ + EDMPF G+VPD+I+NPH PSRM
Sbjct: 953 HLFKVLLRQTRRPELGDKFSSRHGQKGVCGLIAQQEDMPFNDLGMVPDMIMNPHGYPSRM 1012
Query: 1019 TVAHLIECLLSKVAALSGNEGDASPFTDITVDGISRLLREHGYQSRGFEVMYNGHTGKKL 1078
TV L+E L K ++G + F V + L GY G +++ +G TG+ L
Sbjct: 1013 TVGKLMELLSGKAGVVNGTYHYGTAFGGDQVKDVCEELAACGYNYMGKDMLTSGITGQPL 1072
Query: 1079 MAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAH 1138
A I+FGP YYQ+L+HMV DK+HARARGP LTRQP EGRSR+GGLR GEMERDC+IA+
Sbjct: 1073 SAYIYFGPIYYQKLKHMVLDKMHARARGPRAALTRQPTEGRSREGGLRLGEMERDCLIAY 1132
Query: 1139 GAAAFLKERLMEASDAFRVHICGICGLMSVVAKLKHNQFECRSCKNKIDIYQVHIPYAAK 1198
GA+ L ERLM +SD F+V +C CG++ ++ C+ C++ + + IPYA K
Sbjct: 1133 GASMLLIERLMVSSDEFKVDVCTGCGVIG-------SKGWCQKCRSSKSMANIKIPYACK 1185
Query: 1199 LLFQELMAMNIAPRL 1213
LLFQEL +MNI PRL
Sbjct: 1186 LLFQELQSMNIVPRL 1200
>7303535 [K] KOG0215 RNA polymerase III second largest subunit
Length = 1137
Score = 688 bits (1776), Expect = 0.0
Identities = 423/1206 (35%), Positives = 646/1206 (53%), Gaps = 125/1206 (10%)
Query: 25 WTVISAFFREKGLVSQQLDSFNQFINYTIQDLILEDSTLILEQLAQHTTETDNISRKYEI 84
W ++ AF + KGLV Q +DSFN FIN I+ ++ + + T + +
Sbjct: 35 WKLVPAFLQVKGLVKQHIDSFNHFINVDIKKIVKANELV-----------TSGADPLFYL 83
Query: 85 SFGKIYLAKPSMTESDGVSHAMYPQEARLRNLTYASGLFVEIQ-KRTYQAIDIPGRDLKY 143
+ + + KP + + ++ A P E RLR+ TY++ + V+I+ R Q I
Sbjct: 84 KYLDVRVGKPDIDDGFNITKATTPHECRLRDTTYSAPITVDIEYTRGTQRIK-------- 135
Query: 144 XXXXXXXXXXXXXXXXFIGRVPIMLRSKYCLLDDLTESDLYRLKECPFDMGGYFIINGSE 203
IGR+P+MLR C L +E +L +L ECP D GGYF++ G E
Sbjct: 136 ------------RNNLLIGRMPLMLRCSNCALTGKSEFELSKLNECPLDPGGYFVVRGQE 183
Query: 204 KVLIAQERSAGNIVQVFKKSAPSPISHIAEIR---SALEKGSRFISTLQVKLYGREGSTS 260
KV++ QE+ + N K + + + + S EK SR TL + +G+
Sbjct: 184 KVILIQEQLSWN------KMLTEDFNGVVQCQVTSSTHEKKSR---TLVLSKHGKYYLKH 234
Query: 261 RTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEEGFVIQD 320
++ DIPIV+IF+ALG++ D EI I D +
Sbjct: 235 NSMT-------DDIPIVVIFKALGVVSDQEIQSLIGIDSKSQNRFGA-SLIDAYNLKVFT 286
Query: 321 RETALDFIGRRGTALGIKKEKRI------QYAKDILQKEFLPHITQLEGFESRKAFFLGY 374
++ AL+++G + L +K+ + + A+++L L H+ KA ++
Sbjct: 287 QQRALEYMGSK---LVVKRFQSATTKTPSEEARELLLTTILAHVPVDNFNLQMKAIYVSM 343
Query: 375 MINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRDILRFMQRSVEEAK 434
M+ R++ LD+ DDRD++G KRL+LAG LL+ +F+ LF+++ ++ +++ + K
Sbjct: 344 MVRRVMAAELDKTLFDDRDYYGNKRLELAGSLLSMMFEDLFKRMNWELKTIADKNIPKVK 403
Query: 435 --DFNLKLAVKATTITAGLKYALATGNWGEQKKSMSSRAGVSQVLNRYTYSSTLSHLRRT 492
F++ ++A ITAGL+ A+++GNW ++ M RAGV+QVL+R +Y S L + R
Sbjct: 404 AAQFDVVKHMRAAQITAGLESAISSGNWTIKRFKME-RAGVTQVLSRLSYISALGMMTRV 462
Query: 493 NTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPLPIITFL 552
N+ + K++ PR L + WG++CP++TPEG+ACGLVKNL+LM+ I+ + P++
Sbjct: 463 NSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEERPVMIVA 522
Query: 553 NEWGMEPLEDYI--PHQSPDATRVFVNGVWHGIHRNPAKLVDTIRKLRRKGDITPEVSIV 610
G+E + + P +P+ VF+NG G+ N LV +R +RRKG + VS+
Sbjct: 523 FNAGVEDIREVSGNPINNPNVFLVFINGNVLGLTLNHKHLVRNLRYMRRKGRMGSYVSVH 582
Query: 611 RDIREKELKIFTDAGRVYRPLFIVDENPETGRKELKVKKGHVRKLMLTEYQDIEGGFDDE 670
++ + I TD GR+ RP IV+ R+ L VK+ H+ +L + FDD
Sbjct: 583 TSYTQRCIYIHTDGGRLCRPYVIVEN-----RRPL-VKQHHLDELNRGIRK-----FDD- 630
Query: 671 EEMNYTWTSLLNEGLVEYIDAEEEETILIAMQHEDLDPALLPVADSEDDLDPARRIRAIH 730
L +GL+EY+D EE IA + ++
Sbjct: 631 ---------FLLDGLIEYLDVNEENDSFIAWNEDQIEDRT-------------------- 661
Query: 731 NSNIFTHCEIHPSMILGVAASVIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMA 790
TH EI P +LGV A ++P+P HNQSPRNTYQ AMGKQAMG+ N R+D++
Sbjct: 662 -----THLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLM 716
Query: 791 NILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRS 850
L YP P+ ++ +E F +LPAGQNA VA+ YSGY+ ED++I+N++SIDRG R
Sbjct: 717 YNLVYPHAPMVKSKTIELTNFDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRC 776
Query: 851 LFFRSYMDQEKRIGMSITESFEKPHR---TNTLRMKHGTYDKLDDDGLIAPGVRVSGDDM 907
L +++ KR + P + TN + KH D LD DG++APG +V +
Sbjct: 777 LVYKNSKCTVKRYANQTFDRIMGPMKDALTNKVIFKH---DVLDTDGIVAPGEQVQNKQI 833
Query: 908 IIGKTTPIPPDAEELGQRTAFHSKRDASTPLRSTENGIVDQVLITTNQEGLKFVKVRVRT 967
+I K P L ++A + E +++V+++ N E +K+ +R
Sbjct: 834 MINKEMPAVTSMNPLQGQSAQVPYTAVPISYKGPEPSYIERVMVSANAEEDFLIKILLRQ 893
Query: 968 TKIPQIGDKFASRHGQKGTIGITYRTEDMPFTAEGVVPDLIINPHAIPSRMTVAHLIECL 1027
T+IP+IGDKF+SRHGQKG G+ EDMPF G+ PD+I+NPH PSRMTV +E L
Sbjct: 894 TRIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDFGICPDMIMNPHGFPSRMTVGKTLELL 953
Query: 1028 LSKVAALSGNEGDASPFTDITVDGISRLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPT 1087
K L G + F V+ I L HG+ G + Y+G TG L A I+ GP
Sbjct: 954 GGKAGLLEGKFHYGTAFGGSKVEDIQAELERHGFNYVGKDFFYSGITGTPLEAYIYSGPV 1013
Query: 1088 YYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAAFLKER 1147
YYQ+L+HMV DK+HARARGP VLTRQP +GRSR+GGLR GEMERDC+I++GA+ + ER
Sbjct: 1014 YYQKLKHMVQDKMHARARGPKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMER 1073
Query: 1148 LMEASDAFRVHICGICGLMSVVAKLKHNQFECRSCKNKIDIYQVHIPYAAKLLFQELMAM 1207
LM +SDAF V +C CG M+ + C C++ ++ ++ +PYA KLLFQEL +M
Sbjct: 1074 LMISSDAFEVDVCRTCGRMAYCS-------WCHFCQSSANVSKISMPYACKLLFQELTSM 1126
Query: 1208 NIAPRL 1213
N+ P++
Sbjct: 1127 NVVPKM 1132
>ECU11g0370 [K] KOG0215 RNA polymerase III second largest subunit
Length = 1110
Score = 668 bits (1724), Expect = 0.0
Identities = 419/1217 (34%), Positives = 677/1217 (55%), Gaps = 142/1217 (11%)
Query: 27 VISAFFREKGLVSQQLDSFNQFINYTIQDLILEDSTLILEQLAQHTTETDNISRKYEISF 86
+I FF EKGLV Q ++S++ F+++ I+ L+ + I++ HT + + +
Sbjct: 9 LIKLFFNEKGLVRQHIESYDYFVDHEIKALVRANQ--IVDSDIDHT---------FYLKY 57
Query: 87 GKIYLAKPSMTESDGVSHAMYPQEARLRNLTYASGLFVEIQKRTYQAIDIPGRDLKYXXX 146
I +A PS+ E + V++ ++P E RLR++TY++ ++V+I+ + I I RD+
Sbjct: 58 LDIRVAMPSV-EENMVNYNVFPIECRLRDITYSANIYVDIEYVRNRQI-IVKRDV----- 110
Query: 147 XXXXXXXXXXXXXFIGRVPIMLRSKYCLLDDLTESDLYRLK----------ECPFDMGGY 196
IG++P+MLRS C L T+ + K ECP D+GGY
Sbjct: 111 -------------CIGKMPVMLRSSRCHLRRETKGPMEGRKTKDRRIRESQECPLDVGGY 157
Query: 197 FIINGSEKVLIAQERSAGNIVQVFKKSAPSPISHIAEIRSALEKGSRFISTLQVKLYGRE 256
FI+ G E+V++ QE+ + N ++ +S P + A + S+ ++ +
Sbjct: 158 FIVRGIERVVLIQEQLSKN--RIIIESGPKGL--FASVTSSTDE--------------HK 199
Query: 257 GSTSRTIKATLPYIK-----QDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPC 311
TS T + Y+K +++P+VI+ +ALG++ D E+ E + + + M+ C
Sbjct: 200 SKTSVTTRDDCYYLKNSMFSEEVPVVIMMKALGLVQDREVAECVGKEYFEI-MVPSFGEC 258
Query: 312 VEEGFVIQDRETALDFIGRRGTALGIKKE-KRIQYAKDILQKEFLPHITQLEGFESRK-A 369
+ +G I RE AL +I + + +K E RI+ +L ++ LP++ Q+EG + RK
Sbjct: 259 MSKG--IFTREQALLYIS---SYIKLKPEDNRIEEVLTVLSEKVLPNV-QIEGCDLRKKG 312
Query: 370 FFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRDILRFMQRS 429
++ M+ RL L+ +DD+D G KR +LAG LL+ LF+ F++ ++ + + +
Sbjct: 313 IYIALMVRRLAQTKLNILREDDKDFVGNKRFELAGQLLSILFEDTFKRFNFELKKSIDKI 372
Query: 430 VEE---AKDFNLK--LAVKATTITAGLKYALATGNWGEQKKSMSSRAGVSQVLNRYTYSS 484
+ + A++F+ L ++A IT+ L A++TGNW ++ M R+GV+ VL+R++Y S
Sbjct: 373 LSKRSRAQEFDALTFLNLQANMITSTLARAISTGNWNLKRFRME-RSGVTHVLSRHSYIS 431
Query: 485 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTD 544
L + + N+ + K++ PR LH + WG++CP +TPEG++CGLVKNL+L++ I+ +D
Sbjct: 432 ALGMMTKINSHFEKTRKVSGPRSLHTSSWGMLCPVDTPEGESCGLVKNLALLAEITTNSD 491
Query: 545 PLPIITFLNEWGMEPLEDYIPHQ--SPDATRVFVNGVWHGIHRNPAKLVDTIRKLRRKGD 602
PI+ + + G+ + + D VF+NG GI LV+ + RRKG
Sbjct: 492 TKPILDTVYKLGVVDINSVYTREIHQKDMFSVFLNGDIIGITNRADFLVEQFKLHRRKGL 551
Query: 603 ITPEVSIVRDIREKELKIFTDAGRVYRPLFIVDENPETGRKELKVKKGHVRKLMLTEYQD 662
+ VSI + E+ + I +D GRV RPL I+D+N ++ L ++E
Sbjct: 552 VGKFVSIYKVTVERVIHIASDNGRVCRPLIIIDKNRINQTIISNQMDECLKALNISEKVA 611
Query: 663 IEGG---FDDEEEMNYTWTSLLNEGLVEYIDAEEEETILIAMQHEDLDPALLPVADSEDD 719
IE G FD + ++T LL EG +EY+D EE L+A++ ED+
Sbjct: 612 IESGKSLFDCYLKYK-SFTDLLEEGFIEYLDVNEENDCLVALKPEDIGEET--------- 661
Query: 720 LDPARRIRAIHNSNIFTHCEIHPSMILGVAASVIPFPDHNQSPRNTYQSAMGKQAMGVFL 779
TH EI ILG A ++PFP HNQSPRNTYQ AMGKQA+G
Sbjct: 662 ----------------THLEISEFAILGYVAGLVPFPHHNQSPRNTYQCAMGKQAIGHIS 705
Query: 780 TNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMN 839
N R D++ L Y +P+ +T+ ++ + + E+PAGQNA+VA+ YSGY+ ED++++N
Sbjct: 706 LNVKKRFDSVILQLTYTHRPMVSTKILDLINYNEIPAGQNAMVAVMSYSGYDIEDALVLN 765
Query: 840 QSSIDRGLFRSLFFRSYMDQEKRIGMSITESFEKPHRTNTLRMKHGTYDKLDDDGLIAPG 899
++S++RGLFR +++ K+ +++ + + L D+DGL PG
Sbjct: 766 KTSVERGLFRVEVYKTTTTLLKKHSNGMSDVLWPNPKESVL----------DEDGLGKPG 815
Query: 900 VRVSGDDMIIGKTTPIPPDAEELGQRTAFHSKRDASTPLRSTENGIVDQVLITTNQEGLK 959
V + + K +P+ + G+ + + +D++LIT +Q+ +
Sbjct: 816 KMVRDGTVYVNKMSPVDGTYKFTGK-------------VHRGDPAYIDKILITKSQDQV- 861
Query: 960 FVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRTEDMPFTAEGVVPDLIINPHAIPSRMT 1019
+K +R T++P+IGDKF+SRHGQKG +G+ R EDMPF +G+VPD+I+NPH PSRMT
Sbjct: 862 LIKTMLRQTRVPEIGDKFSSRHGQKGVVGLLVRQEDMPFNDQGIVPDIIMNPHGFPSRMT 921
Query: 1020 VAHLIECLLSKVAALSGNEGDASPFTDITVDGISRLLREHGYQSRGFEVMYNGHTGKKLM 1079
V ++E + K L G D++ F + +V+ LL +HG+ G + +G TG L
Sbjct: 922 VGKIVELISGKAGVLEGQILDSTAFKENSVEQTCELLIKHGFSYSGKDCFTSGTTGAPLA 981
Query: 1080 AQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHG 1139
A IFFGP +YQRL+HMV DKIH RARGP +LTRQP EGRS+DGGL+ GEMERDC+I +G
Sbjct: 982 AYIFFGPVFYQRLKHMVADKIHMRARGPRAILTRQPTEGRSKDGGLKLGEMERDCLIGYG 1041
Query: 1140 AAAFLKERLMEASDAFRVHICGICGLMSVVAKLKHNQFECRSCKNKIDIYQVHIPYAAKL 1199
A++ + ERLM +SD F ++C CG+++ C +CK + +V +PYA KL
Sbjct: 1042 ASSLITERLMTSSDVFEAYVCRSCGVLAFKGC-------CVACKGTKPV-KVKMPYACKL 1093
Query: 1200 LFQELMAMNIAPRLYTD 1216
LFQELM+MNI PRL+ +
Sbjct: 1094 LFQELMSMNILPRLHIE 1110
>At5g45140 [K] KOG0215 RNA polymerase III second largest subunit
Length = 1194
Score = 656 bits (1693), Expect = 0.0
Identities = 413/1194 (34%), Positives = 640/1194 (53%), Gaps = 112/1194 (9%)
Query: 27 VISAFFREKGLVSQQLDSFNQFINYTIQDLILEDSTLILEQLAQHTTETDNISRKYEISF 86
++ F + +GLV Q LDSFN FIN I ++ +S + T + + F
Sbjct: 56 LVPEFLKVRGLVKQHLDSFNYFINVGIHKIVKANSRI-----------TSTVDPSIYLRF 104
Query: 87 GKIYLAKPSMTESDGVSHAMYPQEARLRNLTYASGLFVEIQKRTYQAIDIPGRDLKYXXX 146
K+ + +PS+ + V + + P RL ++TYA+ +FV I+ Y
Sbjct: 105 KKVRVGEPSIINVNTVEN-INPHMCRLADMTYAAPIFVNIE---------------YVHG 148
Query: 147 XXXXXXXXXXXXXFIGRVPIMLRSKYCLLDDLTESDLYRLKECPFDMGGYFIINGSEKVL 206
IGR+PIMLRS C+L E +L RL ECP D GGYFII G+EKVL
Sbjct: 149 SHGNKAKSAKDNVIIGRMPIMLRSCRCVLHGKDEEELARLGECPLDPGGYFIIKGTEKVL 208
Query: 207 IAQERSAGNIVQVFKKSAPSPISHIAEIRSALEKGSRFISTLQVKLYGREGSTSRTIKAT 266
+ QE+ + N + + I+ + + K I + K+Y
Sbjct: 209 LIQEQLSKNRI-IIDSDKKGNINASVTSSTEMTKSKTVIQMEKEKIY-----------LF 256
Query: 267 LPYIKQDIPIVIIFRALGIIPDGEILEHICYDVN-DWQMLEMLKPCVEEGFVIQDRETAL 325
L + IPI+I+ +A+G+ D EI++ + D +L ++ CV EG + ++ AL
Sbjct: 257 LHRFVKKIPIIIVLKAMGMESDQEIVQMVGRDPRFSASLLPSIEECVSEG--VNTQKQAL 314
Query: 326 DFIGRRGTAL--GIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLLLCA 383
D++ + + G EK + A IL+ FL H+ + +K F++G M+ R++
Sbjct: 315 DYLEAKVKKISYGTPPEKDGR-ALSILRDLFLAHVPVPDNNFRQKCFYVGVMLRRMIEAM 373
Query: 384 LDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRDILRFMQRSVEE---AKDFNLKL 440
L++ DD+D+ G KRL+L+G L++ LF+ LF+ + + ++ + + + A F+
Sbjct: 374 LNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTMLSEAIKNVDHILNKPIRASRFDFSQ 433
Query: 441 AVKATT---ITAGLKYALATGNWGEQKKSMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIG 497
+ + I+ GL+ L+TGN+ + K+ R G++QVL R ++ ++ + + +
Sbjct: 434 CLNKDSRYSISLGLERTLSTGNF-DIKRFRMHRKGMTQVLTRLSFIGSMGFITKISPQFE 492
Query: 498 RDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPLPIITFLNEWGM 557
+ K++ PR L + WG++CP +TPEG++CGLVKNL+LM+ ++ + P++ + G+
Sbjct: 493 KSRKVSGPRSLQPSQWGMLCPCDTPEGESCGLVKNLALMTHVTTDEEEGPLVAMCYKLGV 552
Query: 558 EPLEDYIPHQ--SPDATRVFVNGVWHGIHRNPAKLVDTIRKLRRKGDITPEVSIVRDIRE 615
LE + +PD+ V +NG+ G H P +++R+LRR G I VS+ + ++
Sbjct: 553 TDLEVLSAEELHTPDSFLVILNGLILGKHSRPQYFANSLRRLRRAGKIGEFVSVFTNEKQ 612
Query: 616 KELKIFTDAGRVYRPLFIVDENPETGRKELKVKKGHVRKLMLTEYQDIEGGFDDEEEMNY 675
+ + +D GRV RPL I D+ +VK+ H+++L QD FDD
Sbjct: 613 HCVYVASDVGRVCRPLVIADKGIS------RVKQHHMKEL-----QDGVRTFDD------ 655
Query: 676 TWTSLLNEGLVEYIDAEEEETILIAMQHEDLDPALLPVADSEDDLDPARRIRAIHNSNIF 735
+ +GL+EY+D EE L+ ++ E AD+
Sbjct: 656 ----FIRDGLIEYLDVNEENNALVCLRAEAAK------ADT------------------- 686
Query: 736 THCEIHPSMILGVAASVIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYY 795
TH EI P ILGV A +IP+P HNQSPRNTYQ AMGKQAMG N RMDT+ +L Y
Sbjct: 687 THIEIEPFTILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLNRMDTLLYLLVY 746
Query: 796 PQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRS 855
PQ+PL TTR +E + + +L AGQNA VA+ +SGY+ ED+++MN+SS+DRG R + +
Sbjct: 747 PQRPLLTTRTIELVGYDKLGAGQNATVAVMSFSGYDIEDAIVMNKSSLDRGFGRCIVMKK 806
Query: 856 YMDQEKRIGMSITESFEKPHRTNTLRMKHGTYDKLDDDGLIAPGVRVSGDDMIIGKTTPI 915
+ ++ + P RT K LDDDGL PG + +D+ I K P+
Sbjct: 807 IVAMSQKYDNCTADRILIPQRTGPDAEK---MQILDDDGLATPGEIIRPNDIYINKQVPV 863
Query: 916 PPDAEELGQRTAFHSKRDASTPLRST--ENGIVDQVLITTNQEGLKFVKVRVRTTKIPQI 973
+ + R A + E +VD+V + ++++G +K +R T+ P++
Sbjct: 864 -DTVTKFTSALSDSQYRPAREYFKGPEGETQVVDRVALCSDKKGQLCIKYIIRHTRRPEL 922
Query: 974 GDKFASRHGQKGTIGITYRTEDMPFTAEGVVPDLIINPHAIPSRMTVAHLIECLLSKVAA 1033
GDKF+SRHGQKG GI + ED PF+ G+ PDLI+NPH PSRMTV +IE L SK
Sbjct: 923 GDKFSSRHGQKGVCGIIIQQEDFPFSELGICPDLIMNPHGFPSRMTVGKMIELLGSKAGV 982
Query: 1034 LSGNEGDASPFTDIT-----VDGISRLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTY 1088
G S F + + V+ IS L E G+ G +++Y+G +G+ + A IF GP Y
Sbjct: 983 SCGRFHYGSAFGERSGHADKVETISATLVEKGFSYSGKDLLYSGISGEPVEAYIFMGPIY 1042
Query: 1089 YQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAAFLKERL 1148
YQ+L+HMV DK+HAR GP ++TRQP EG+S++GGLR GEMERDC+IA+GA+ + ERL
Sbjct: 1043 YQKLKHMVLDKMHARGSGPRVMMTRQPTEGKSKNGGLRVGEMERDCLIAYGASMLIYERL 1102
Query: 1149 MEASDAFRVHICGICGLMSVVAKLKHNQFECRSCKNKIDIYQVHIPYAAKLLFQ 1202
M +SD F V +C CGL+ K + C +CKN +I + +PYA KLLFQ
Sbjct: 1103 MISSDPFEVQVCRACGLLGYY-NYKLKKAVCTTCKNGDNIATMKLPYACKLLFQ 1155
>At3g18090 [K] KOG0214 RNA polymerase II second largest subunit
Length = 1038
Score = 561 bits (1445), Expect = e-159
Identities = 383/1138 (33%), Positives = 575/1138 (49%), Gaps = 152/1138 (13%)
Query: 112 RLRNLTYASGLFVEIQKRTYQ-------AIDIPGRDLKYXXXXXXXXXXXXXXXXFIGRV 164
RL+N+TY++ + V Q T Q +D+ +D+ IG +
Sbjct: 4 RLQNMTYSARIKVNAQVETGQDEYVEKEILDVKKQDI------------------LIGSI 45
Query: 165 PIMLRSKYCLLDDLTESDLYRLKECPFDMGGYFIINGSEKVLIAQERSAGNIVQVFKKSA 224
P+M++S C + + + + C FD GGYF+I G+EKV IAQE+ +++ ++
Sbjct: 46 PVMVKSVLCKTSEKGKENCKK-GNCAFDQGGYFVIKGAEKVFIAQEQMCTK--RLWISNS 102
Query: 225 PSPISHIAEIRSALEKGSRFISTLQVKLYGREGSTSRTIKATLPYIKQDIPIVIIFRALG 284
P +S +E K +RFI L + + T+ ++ +IP+ ++F ALG
Sbjct: 103 PWTVSFRSET-----KRNRFIVRLSENEKAEDYKIMEKV-LTVYFLSTEIPVWLLFFALG 156
Query: 285 IIPDGEILEHICYDVNDWQMLEMLKPCVEEGFVIQDR----ETALDFIGRRGTALGIKKE 340
+ D E ++ I +D +D + L + E + + AL ++ + IK
Sbjct: 157 VSSDKEAMDLIAFDGDDASITNSLIASIHEADAVCEAFRCGNNALTYVEHQ-----IKST 211
Query: 341 K--RIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKK 398
K + D L+ P + L+ +KA FLGYM+ LL ++ ++RD F K
Sbjct: 212 KFPPAESVDDCLRLYLFPCLQGLK----KKARFLGYMVKCLLSAYAGKRKCENRDSFRNK 267
Query: 399 RLDLAGPLLAQLFKTLFRKLTRDILRFMQRSVEEAKDFN-LKLAVKATTITAGLKYALAT 457
R++LAG LL + + R + R MQ+ + D ++ + A+ IT GL A +T
Sbjct: 268 RIELAGELLEREIRVHLAHARRKMTRAMQKQLSGDGDLKPIEHYLDASVITNGLNRAFST 327
Query: 458 GNWGEQKKSMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVC 517
G W + M +GV L R TL LRRT + GK+ R H +HWG VC
Sbjct: 328 GAWSHPFRKMERVSGVVANLGRANPLQTLIDLRRTRQQVLYTGKVGDARHPHPSHWGRVC 387
Query: 518 PAETPEGQACGLVKNLSLMSCISV-GTDPLPIITFLNEWGMEPLEDYIPHQSPDATRVFV 576
TP+G+ CGLVKN+SL+ +S G + ++ L GME L + +V +
Sbjct: 388 FLSTPDGENCGLVKNMSLLGLVSTQGLES--VVEMLFTCGMEELMNDTSTPLCGKHKVLL 445
Query: 577 NGVWHGIHRNPAKLVDTIRKLRRKGDITPEVSIVRDIREKELKIFTDAGRVYRPLFIVDE 636
NG W G+ + V ++ RR+ ++ E RD + E++IFTDAGR+ RPL +V+
Sbjct: 446 NGDWVGLCADSESFVGELKSRRRQSELPLE----RDKDDNEVRIFTDAGRLLRPLLVVE- 500
Query: 637 NPETGRKELKVKKGHVRKLMLTEYQDIEGGFDDEEEMNYTWTSLLNEGLVEYIDAEEEET 696
++ KL ++ Y + LL++G++E I EEEE
Sbjct: 501 --------------NLHKLK------------QDKPTQYPFKHLLDQGILELIGIEEEED 534
Query: 697 ILIAMQHEDLDPALLPVADSEDDLDPARRIRAIHNSNIFTHCEIHPSMILGVAASVIPFP 756
A + L + +THCE+ S +LGV+ +++PF
Sbjct: 535 CTTAWGIKQL----------------------LKEPKNYTHCELDLSFLLGVSCAIVPFA 572
Query: 757 DHNQSPRNTYQSAMG-KQAMGVFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELP 815
+H+ R YQS +QA+G TN N+R DT++ L+YPQKPL T A E L+ L
Sbjct: 573 NHDHGKRVLYQSQKHCQQAIGFSSTNPNIRCDTLSQQLFYPQKPLFKTLASECLEKEVLF 632
Query: 816 AGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYM------DQEKRIGMSITE 869
GQNAIVA+ + GYNQEDS++MN++S++RG+FRS RSY D EKR M
Sbjct: 633 NGQNAIVAVNVHLGYNQEDSIVMNKASLERGMFRSEQIRSYKAEVDTKDSEKRKKMDELV 692
Query: 870 SFEKPHRTNTLRMKHGTYDKLDDDGLIAPGVRVSGDDMIIGKTTPIPPDAEELGQRTAFH 929
F K + K G D L+DDG G +S D++IG+ T
Sbjct: 693 QFGKTYS------KIGKVDSLEDDGFPFIGANMSTGDIVIGRCT---------------E 731
Query: 930 SKRDASTPLRSTENGIVDQVLITTNQEGLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGI 989
S D S L+ TE GIV +V++++N EG F V +R + P +GDKF+S HGQKG +G
Sbjct: 732 SGADHSIKLKHTERGIVQKVVLSSNDEGKNFAAVSLRQVRSPCLGDKFSSMHGQKGVLGY 791
Query: 990 TYRTEDMPFTAEGVVPDLIINPHAIPSRMTVAHLIECLLSKVAA--LSGNEGDASPFTDI 1047
++ PFT +G+VPD++INPHA PSR T L+E LSK A + EG ++ +T +
Sbjct: 792 LEEQQNFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALSKGIACPIQKKEGSSAAYTKL 851
Query: 1048 T----------VDGISRLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVD 1097
T V I+ L G+ G E +YNG +G+ + + IF GPT+YQRL HM +
Sbjct: 852 TRHATPFSTPGVTEITEQLHRAGFSRWGNERVYNGRSGEMMRSLIFMGPTFYQRLVHMSE 911
Query: 1098 DKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAAFLKERLMEASDAFRV 1157
+K+ R GP+ LTRQPV R R GG+RFGEMERDC+IAHGA+A L ERL SD+ ++
Sbjct: 912 NKVKFRNTGPVHPLTRQPVADRKRFGGIRFGEMERDCLIAHGASANLHERLFTLSDSSQM 971
Query: 1158 HICGICGLMSVVAKLKHNQFE------CRSCKNKIDIYQVHIPYAAKLLFQELMAMNI 1209
HIC C + V + + CR C + + +V++PY AKLL QEL +M I
Sbjct: 972 HICRKCKTYANVIERTPSSGRKIRGPYCRVCASSDHVVRVYVPYGAKLLCQELFSMGI 1029
>At3g23780 [K] KOG0214 RNA polymerase II second largest subunit
Length = 946
Score = 524 bits (1349), Expect = e-148
Identities = 347/976 (35%), Positives = 504/976 (51%), Gaps = 117/976 (11%)
Query: 266 TLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEEGFVIQDR---- 321
T+ ++ +IP+ ++F ALG+ D E ++ I +D +D + L + + +
Sbjct: 47 TVYFLSTEIPVWLLFFALGVSSDKEAMDLIAFDGDDASITNSLIASIHVADAVCEAFRCG 106
Query: 322 ETALDFIGRRGTALGIKKEK--RIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRL 379
AL ++ ++ IK K + + L P + L+ +KA FLGYM+ L
Sbjct: 107 NNALTYVEQQ-----IKSTKFPPAESVDECLHLYLFPGLQSLK----KKARFLGYMVKCL 157
Query: 380 LLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRDILRFMQRSVEEAKDFN-L 438
L ++ ++RD F KR++LAG LL + + R + R MQ+ + D +
Sbjct: 158 LNSYAGKRKCENRDSFRNKRIELAGELLEREIRVHLAHARRKMTRAMQKHLSGDGDLKPI 217
Query: 439 KLAVKATTITAGLKYALATGNWGEQKKSMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGR 498
+ + A+ IT GL A +TG W + M +GV L R TL LRRT +
Sbjct: 218 EHYLDASVITNGLSRAFSTGAWSHPFRKMERVSGVVANLGRANPLQTLIDLRRTRQQVLY 277
Query: 499 DGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPLP-IITFLNEWGM 557
GK+ R H +HWG VC TP+G+ CGLVKN+SL+ +S T L ++ L GM
Sbjct: 278 TGKVGDARYPHPSHWGRVCFLSTPDGENCGLVKNMSLLGLVS--TQSLESVVEKLFACGM 335
Query: 558 EPLEDYIPHQSPDATRVFVNGVWHGIHRNPAKLVDTIRKLRRKGDITPEVSIVRDIREKE 617
E L D +V +NG W G+ + V ++ RR+ ++ E RD + E
Sbjct: 336 EELMDDTCTPLFGKHKVLLNGDWVGLCADSESFVAELKSRRRQSELPRE----RDKDDNE 391
Query: 618 LKIFTDAGRVYRPLFIVDENPETGRKELKVKKGHVRKLMLTEYQDIEGGFDDEEEMNYTW 677
++IFTDAGR+ RPL +V+ +++KL E+ Y +
Sbjct: 392 VRIFTDAGRLLRPLLVVE---------------NLQKLK------------QEKPSQYPF 424
Query: 678 TSLLNEGLVEYIDAEEEETILIAMQHEDLDPALLPVADSEDDLDPARRIRAIHNSNIFTH 737
LL+ G++E I EEEE A + L + I+TH
Sbjct: 425 DHLLDHGILELIGIEEEEDCNTAWGIKQL----------------------LKEPKIYTH 462
Query: 738 CEIHPSMILGVAASVIPFPDHNQSPRNTYQSAMG-KQAMGVFLTNYNVRMDTMANILYYP 796
CE+ S +LGV+ +V+PF +H+ R YQS +QA+G TN N+R DT++ L+YP
Sbjct: 463 CELDLSFLLGVSCAVVPFANHDHGRRVLYQSQKHCQQAIGFSSTNPNIRCDTLSQQLFYP 522
Query: 797 QKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSY 856
QKPL T A E LK L GQNAIVA+ + GYNQEDS++MN++S++RG+FRS RSY
Sbjct: 523 QKPLFKTLASECLKKEVLFNGQNAIVAVNVHLGYNQEDSIVMNKASLERGMFRSEQIRSY 582
Query: 857 M------DQEKRIGMSITESFEKPHRTNTLRMKHGTYDKLDDDGLIAPGVRVSGDDMIIG 910
D EKR M F K H K G D L+DDG G +S D++IG
Sbjct: 583 KAEVDAKDSEKRKKMDELVQFGKTHS------KIGKVDSLEDDGFPFIGANMSTGDIVIG 636
Query: 911 KTTPIPPDAEELGQRTAFHSKRDASTPLRSTENGIVDQVLITTNQEGLKFVKVRVRTTKI 970
+ T S D S L+ TE GIV +V++++N EG F V +R +
Sbjct: 637 RCT---------------ESGADHSIKLKHTERGIVQKVVLSSNDEGKNFAAVSLRQVRS 681
Query: 971 PQIGDKFASRHGQKGTIGITYRTEDMPFTAEGVVPDLIINPHAIPSRMTVAHLIECLLSK 1030
P +GDKF+S HGQKG +G ++ PFT +G+VPD++INPHA PSR T L+E LSK
Sbjct: 682 PCLGDKFSSMHGQKGVLGYLEEQQNFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALSK 741
Query: 1031 -VAALSGNEGDASPFTDIT----------VDGISRLLREHGYQSRGFEVMYNGHTGKKLM 1079
+A EG ++ +T +T V I+ L G+ G E +YNG +G+ +
Sbjct: 742 GIACPIQKEGSSAAYTKLTRHATPFSTPGVTEITEQLHRAGFSRWGNERVYNGRSGEMMR 801
Query: 1080 AQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHG 1139
+ IF GPT+YQRL HM +DK+ R GP+ LTRQPV R R GG++FGEMERDC+IAHG
Sbjct: 802 SMIFMGPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHG 861
Query: 1140 AAAFLKERLMEASDAFRVHICGICGLMSVVAKLKHNQFE------CRSCKNKIDIYQVHI 1193
A+A L ERL SD+ ++HIC C + V + + CR C + + +V++
Sbjct: 862 ASANLHERLFTLSDSSQMHICRKCKTYANVIERTPSSGRKIRGPYCRVCVSSDHVVRVYV 921
Query: 1194 PYAAKLLFQELMAMNI 1209
PY AKLL QEL +M I
Sbjct: 922 PYGAKLLCQELFSMGI 937
>CE05629 [K] KOG0216 RNA polymerase I second largest subunit
Length = 1127
Score = 387 bits (994), Expect = e-107
Identities = 351/1181 (29%), Positives = 521/1181 (43%), Gaps = 205/1181 (17%)
Query: 106 MYPQEARLRNLTYASGLFVEIQKRTYQAIDIPGRDLKYXXXXXXXXXXXXXXXXFIGRVP 165
+ P E R R LTYA L V I + + G L +G+VP
Sbjct: 68 LLPAECRQRGLTYAGNLKVGID------VHVNGSRLDIIEI-------------ILGKVP 108
Query: 166 IMLRSKYCLLDDLTESDLYRLKECPFDMGGYFIINGSEKV---LIAQERS--AGNIVQVF 220
IMLRS+ C L ++ +L E P + GGYFI+NGSEKV LIA R+ I + F
Sbjct: 109 IMLRSEGCHLRGMSRKELVVAGEEPIEKGGYFIVNGSEKVIRLLIANRRNFPIAIIRKTF 168
Query: 221 KKSAPSPISHIAEIRSALEKGSRFISTLQVKLYGREGSTSRTIKATLPYIKQD--IPIVI 278
K+ +RS E + + TL G T++ L + ++ +P++
Sbjct: 169 KEKGKLFSEFGVMMRSVKENHTAVMMTLHYLDTG-------TMQLALQFRREIFYVPLMY 221
Query: 279 IFRALGIIPDGEILEHICYDVNDWQ-----MLEMLKPCVEEGFVIQDRETALDFIGRRGT 333
I +AL D I N Q +L ML C EE I ++E A+ IG R
Sbjct: 222 IVKALTDKNDAVISAGFKRGRNQDQFYSSCILNMLAQCQEEE--ILNQEAAIRAIGSRFR 279
Query: 334 ALGIKK----EKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQ 389
+ E ++ + I+++ L H+ + K L YM +L+
Sbjct: 280 VAVSDRVAPWEDDLEAGRFIIRECVLIHLDS----DEEKFHTLAYMTQKLIALVKGECAP 335
Query: 390 DDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRDILRFMQRSVE---EAKDFNLKLA--VKA 444
+ D+ + ++G +L + R+ +I+ ++R +E KDF L A +KA
Sbjct: 336 ETPDNPQFQEASVSGHILL----LILRERMENIIGMVRRKLEYMSSRKDFILTSAAILKA 391
Query: 445 T------TITAGLKYALATGNWGEQKK-SMSSRAGVSQVLNRYTYSSTLSHLRRTNT-PI 496
IT G+ Y LATGN + ++ +G S + R +SH R +
Sbjct: 392 LGNHTGGEITRGMAYFLATGNLVTRVGLALQQESGFSVIAERINQLRFVSHFRAIHRGAF 451
Query: 497 GRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVG--TDPLPIITFLNE 554
+ + R+L WG +CP TP+G CGL+ +++ SC V +D + + L E
Sbjct: 452 FMEMRTTDVRKLRPEAWGFICPVHTPDGAPCGLLNHVTA-SCRIVTDLSDNSNVPSLLAE 510
Query: 555 WGMEPLEDY-IPHQSPDATRVFVNGVWHGIHRNPAKLVDTIRKLRRKGDI--------TP 605
GM + + + V +NG + G P +I + R + T
Sbjct: 511 LGMYTHKTVALAPPGEELYPVLMNGRFLGYV--PITKAASIERYLRCAKVAKDARIPYTS 568
Query: 606 EVSIVR---DIREKELK-----IFTDAGRVYRPLFIVDENPETGRKELKVKKGHVRKLML 657
E+++VR DI+ + + I +DAGR+ RP VR L +
Sbjct: 569 EIALVRRSTDIKNIQTQYPGIYILSDAGRLIRP---------------------VRNLAM 607
Query: 658 TEYQDIEGGFDDEEEMNYTWTSLLNEGLVEYIDAEEEETILIAMQHEDLDPALLPVADSE 717
VE+I E+ + + + E+ +P
Sbjct: 608 DA--------------------------VEHIGTFEQVYLSVVLDPEEAEPG-------- 633
Query: 718 DDLDPARRIRAIHNSNIFTHCEIHPSMILGVAASVIPFPDHNQSPRNTYQSAMGKQAMGV 777
+ H E+HPS + A ++IPFPDHNQSPRN YQ MGKQ MG
Sbjct: 634 ----------------VTMHQELHPSCLFSFAGNLIPFPDHNQSPRNVYQCQMGKQTMGT 677
Query: 778 FLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMI 837
+ ++ R D L +PQ+P+ A E + E P G NA VA+ Y+GY+ ED+M
Sbjct: 678 AVHAWHSRADNKMYRLQFPQQPMLKLEAYEKYEMDEYPLGTNACVAVISYTGYDMEDAMT 737
Query: 838 MNQSSIDRGLFRSLFFRSYMDQEKRIGMSITESFEKPHRTNTLRMKHGTYDKLDDDGLIA 897
+N++S RG F + + +RI + E+ +T R + DGL
Sbjct: 738 INKASYQRG-----FAHGTVIKVERINLVT----ERERKTIFYRNPREEIKTVGPDGLPI 788
Query: 898 PGVRVSGDDMIIGKTTPIPPDAEELGQRT-AFHSKRDASTPL-RSTENGIVDQVLITTNQ 955
PG R D++ + + E RT FH A L R E G D
Sbjct: 789 PGRRYFLDEVYY-----VTFNMETGDFRTHKFHYAEPAYCGLVRIVEQGEGDS------- 836
Query: 956 EGLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRTEDMPFTAEGVVPDLIINPHAIP 1015
G K ++ R + P IGDKFASRHGQKG + E +PF+ G+VPD+I NPH P
Sbjct: 837 -GAKHALIQWRIERNPIIGDKFASRHGQKGINSFLWPVESLPFSETGMVPDIIFNPHGFP 895
Query: 1016 SRMTVAHLIECLLSKVAALSGNEGDASPFT----DITVDGISRLLREHGYQSRGFEVMYN 1071
SRMT+ +IE + K AA G DASPF + ++ LL + GY G E Y+
Sbjct: 896 SRMTIGMMIESMAGKAAATHGENYDASPFVFNEDNTAINHFGELLTKAGYNYYGNETFYS 955
Query: 1072 GHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEME 1131
G G+++ QIFFG YYQRLRHM+ DK RA GP+ +T QPV+GR + GG+RFGEME
Sbjct: 956 GVDGRQMEMQIFFGIVYYQRLRHMIADKFQVRATGPIDPITHQPVKGRKKGGGIRFGEME 1015
Query: 1132 RDCMIAHGAAAFLKERLMEASDAFRVHICGICG-LMSV---------VAKLKHNQFE--- 1178
RD +IAHG + L++RL+ SD + C CG L+SV + K K E
Sbjct: 1016 RDAIIAHGTSFVLQDRLLNCSDRDVAYACRRCGSLLSVLMSSRAGSHLLKKKRKDDEPLD 1075
Query: 1179 ------CRSCKNKIDIYQVHIPYAAKLLFQELMAMNIAPRL 1213
CR+C ++ + +P + L EL AMN+ +L
Sbjct: 1076 YTETQRCRTCDKDDQVFLLQVPRVFRYLTAELAAMNVKIKL 1116
>7296211 [K] KOG0216 RNA polymerase I second largest subunit
Length = 1129
Score = 342 bits (878), Expect = 2e-93
Identities = 324/1207 (26%), Positives = 535/1207 (43%), Gaps = 187/1207 (15%)
Query: 62 TLILEQLAQHTTETDNIS---RKYEISFGKIYLAKPSMTES--DGVSHAMYPQEARLRNL 116
T+ L+ A+H +S K + I++AKP + + D + +YP ++R ++
Sbjct: 48 TVGLDNSAKHMIPNHWLSPAGEKISMKVESIWIAKPKVPQDVIDVRTREIYPTDSRQLHV 107
Query: 117 TYASGLFVEIQKRTYQAIDIPGRDLKYXXXXXXXXXXXXXXXXFIGRVPIMLRSKYCLLD 176
+Y+ V + P +G VPIMLRSK C L
Sbjct: 108 SYSGMCSVRLGWSVNGVQKTP-------------------INMDLGEVPIMLRSKACNLG 148
Query: 177 DLTESDLYRLKECPFDMGGYFIINGSEKV---LIAQERSAGNIVQVFKKSAPSPISHIAE 233
T ++ + E + GG F+I G+EK+ LI R+ + + V + S + ++
Sbjct: 149 QATPEEMVKHGEHDSEWGGIFVIRGNEKIVRMLIMTRRN--HPICVKRSSWKDRGQNFSD 206
Query: 234 IRSALEKGSRFISTLQVKLYGREGSTSRTIKATLPYIKQDIPIVIIFRALGIIPDGEILE 293
+ ++ S+L ++ T++ + + + + +P+ +I + L D EI
Sbjct: 207 LGMLVQTVREDESSLSNVVHYLNNGTAKFMFSHVKRLSY-VPVCLILKCLMDYTDEEIYN 265
Query: 294 HICYDVNDWQMLEMLKPCVE------EGFVIQDRETALDFIGR--RGTALGIKKEKRIQY 345
+ V ++ + CV+ + + FIG R + + +
Sbjct: 266 RL---VQGYESDQYYVSCVQAMLREVQNENVYTHAQCKSFIGNLFRARFPEVPEWQPDDD 322
Query: 346 AKDILQKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGP 405
D + +E + + L+ +E + + +MI +L CA + ++ D + + L G
Sbjct: 323 VTDFILRERV--MIHLDTYEDKFQLIV-FMIQKLFQCAQGKYKVENVDSAMMQEVLLPGH 379
Query: 406 LLAQLFKTLFRKLTRDILRFMQRSVEEAKDFNLKLAV------KATTITAGLKYALATGN 459
L + + R +Q+ + + D + AV +A + ++ LATGN
Sbjct: 380 LYQKYLSERVESWVSQVRRCLQKKLT-SPDALVTSAVMTQCMRQAGGVGRAIESFLATGN 438
Query: 460 WGEQKK-SMSSRAGV---SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGL 515
+ + +G+ ++ +NR Y S + R + + + RQL WG
Sbjct: 439 IASRTGLGLMQNSGLVIMAENINRMRYMSHFRAIHRGS--YFTTMRTTEARQLLPDAWGF 496
Query: 516 VCPAETPEGQACGLVKNLSLMSCISVGTDPL---PIITFLNEWGMEPLEDYIPHQSPDAT 572
+CP TP+G CGL+ +L+L IS+ DP I L + GM PL + +
Sbjct: 497 ICPVHTPDGTPCGLLNHLTLTCEISMRPDPKLVKAIPKHLIDMGMMPLSNR-RYLGEKLY 555
Query: 573 RVFVNGVWHG-IHRNPA-KLVDTIRKLRRKGDITPEVSIVRDIREKE------LKIFTDA 624
VF++G G IH++ A K+VD +R + G + P++ + I K+ L I T
Sbjct: 556 VVFLDGKHLGHIHQSEAEKIVDELRYGKIFGTL-PQMMEIGFIPFKKNGQFPGLYIATGP 614
Query: 625 GRVYRPLFIVDENPETGRKELKVKKGHVRKLMLTEYQDIEGGFDDEEEMNYTWTSLLNEG 684
R+ RP++ N W
Sbjct: 615 ARMMRPVW-----------------------------------------NLKWKR----- 628
Query: 685 LVEYIDAEEEETILIAMQHEDLDPALLPVADSEDDLDPARRIRAIHNSNIFTHCEIHPSM 744
VEYI E+ + IA+ +++ P + TH E+ +
Sbjct: 629 -VEYIGTLEQLYMEIAIDAKEMYP------------------------DFTTHLELAKTH 663
Query: 745 ILGVAASVIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYYPQKPLGTTR 804
+ A++IP PD+NQSPRN YQ MGKQ MG N+ + L P PL
Sbjct: 664 FMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPGTPLFRPV 723
Query: 805 AMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGL-FRSLFFRSYMDQEKRI 863
+ ++ + G NAIVA+ Y+GY+ ED+MI+N+++ +RG + S++ ++ +K+
Sbjct: 724 HYDNIQLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIYKTKFLTLDKK- 782
Query: 864 GMSITESFEKPHRTNTLRMKHGTYDKLDDDGLIAPGVRVSGDDMIIGKTTPIPPDAEELG 923
S+ H +KH LD DGL PG ++S G D E
Sbjct: 783 -----SSYFARHPHMPELIKH-----LDTDGLPHPGSKLS-----YGSPLYCYFDGEVAT 827
Query: 924 QRTAFHSKRDASTPLRSTENGIVDQV--LITTNQEGLKFVKVRVRTTKIPQIGDKFASRH 981
+ ++ E+ IV+ + L + + K V + +R + IGDKFASR
Sbjct: 828 YKVVKMDEK---------EDCIVESIRQLGSFDLSPKKMVAITLRVPRPATIGDKFASRA 878
Query: 982 GQKGTIGITYRTEDMPFTAEGVVPDLIINPHAIPSRMTVAHLIECLLSKVAALSGNEGDA 1041
GQKG Y ED+PFT G++PD++ NPH PSRMT+A +IE + K AA+ GN DA
Sbjct: 879 GQKGICSQKYPAEDLPFTESGLIPDIVFNPHGFPSRMTIAMMIETMAGKGAAIHGNVYDA 938
Query: 1042 SPFT----DITVDGISRLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVD 1097
+PF + +D ++L GY G E +Y+G G+++ A IFFG +YQRLRHMV
Sbjct: 939 TPFRFSEENTAIDYFGKMLEAGGYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMVF 998
Query: 1098 DKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAAFLKERLMEASDAFRV 1157
DK R+ G ++ T QP++GR R GG+RFGEMERD +I+HGAA L++RL SD
Sbjct: 999 DKWQVRSTGAVEARTHQPIKGRKRGGGVRFGEMERDALISHGAAFLLQDRLFHNSDKTHT 1058
Query: 1158 HICGICGLMSVVAKL----KHNQF--------ECRSCKNKIDIYQVHIPYAAKLLFQELM 1205
+C CG S++A L K N+ CR C + + + IP++ K L EL
Sbjct: 1059 LVCHKCG--SILAPLQRIVKRNETGGLSSQPDTCRLCGDNSSVSMIEIPFSFKYLVTELS 1116
Query: 1206 AMNIAPR 1212
++NI R
Sbjct: 1117 SVNINAR 1123
>YPR010c [K] KOG0216 RNA polymerase I second largest subunit
Length = 1203
Score = 337 bits (863), Expect = 9e-92
Identities = 314/1126 (27%), Positives = 493/1126 (42%), Gaps = 147/1126 (13%)
Query: 78 ISRKYEISFGKIYLAKPSMTESDGVSHAM----YPQEARLRNLTYASGLFVEIQKRTYQA 133
+ K +S ++ +AKP +DGVS A+ YP E+R R +Y L ++++
Sbjct: 91 LGNKLSVSVEQVSIAKPM--SNDGVSSAVERKVYPSESRQRLTSYRGKLLLKLKWSVNNG 148
Query: 134 ID--IPGRDLKYXXXXXXXXXXXXXXXXFIGRVPIMLRSKYCLLDDLTESDLYRLKECPF 191
+ RD G +P+ML+S C L+ ++ +L + KE
Sbjct: 149 EENLFEVRDC--------------------GGLPVMLQSNRCHLNKMSPYELVQHKEESD 188
Query: 192 DMGGYFIINGSEK---VLIAQERS--AGNIVQVFKKSAPSPISHIAEIRSALEKGSRFIS 246
++GGYFI+NG EK +LI Q R+ I F S + +IRS + S
Sbjct: 189 EIGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFANRGASYSHYGIQIRSVRPDQT---S 245
Query: 247 TLQVKLYGREGSTSRTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHIC-YDVNDWQML 305
V Y +G T + + + +P+V+I +AL D EI + I DV D +
Sbjct: 246 QTNVLHYLNDGQV--TFRFSWRKNEYLVPVVMILKALCHTSDREIFDGIIGNDVKDSFLT 303
Query: 306 EMLKPCVEEGFV-----IQDRETALDFIGRRGTAL--GIKKEKRIQYAKDILQKEFLPHI 358
+ L+ + GF +Q+R L ++G + + + ++ +++L + L H+
Sbjct: 304 DRLE-LLLRGFKKRYPHLQNRTQVLQYLGDKFRVVFQASPDQSDLEVGQEVLDRIVLVHL 362
Query: 359 TQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKL 418
+ +G + + L +MI +L D+ D + + L G L + K +
Sbjct: 363 GK-DGSQDKFRMLL-FMIRKLYSLVAGECSPDNPDATQHQEVLLGGFLYGMILKEKIDEY 420
Query: 419 TRDILRFMQRSVEEAKDFNLK--------LAVKATTITAGLKYALATGNWGEQK-KSMSS 469
++I+ ++ + N K L I + ++Y L+TGN Q +
Sbjct: 421 LQNIIAQVRMDINRGMAINFKDKRYMSRVLMRVNENIGSKMQYFLSTGNLVSQSGLDLQQ 480
Query: 470 RAGVSQVLNRYTYSSTLSHLRRTNT-PIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACG 528
+G + V + + +SH R + K R+L WG +CP TP+G CG
Sbjct: 481 VSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCG 540
Query: 529 LVKNLSLMSCISV-GTDPLPIITFLNEWGMEPLEDYIPHQSPDATRVFVNGVWHG--IHR 585
L+ + + IS +D I + L G+ P P V ++G G H
Sbjct: 541 LLNHFAHKCRISTQQSDVSRIPSILYSLGVAPASHTFA-AGPSLCCVQIDGKIIGWVSHE 599
Query: 586 NPAKLVDTIRKLRRKGDITPEVSIVRDIREKELKIFTDAGRVYRPLFIVDENPETGRKEL 645
+ DT+R + +G TP + I +I Y P + P L
Sbjct: 600 QGKIIADTLRYWKVEGK-TPGLPIDLEIG-------------YVPPSTRGQYP-----GL 640
Query: 646 KVKKGHVRKLMLTEYQDIEGGFDDEEEMNYTWTSLLNEGLVEYIDAEEEETILIAMQHED 705
+ GH R L Y + D+E++ + E+ + IA+ ++
Sbjct: 641 YLFGGHSRMLRPVRYLPL-----DKEDI---------------VGPFEQVYMNIAVTPQE 680
Query: 706 LDPALLPVADSEDDLDPARRIRAIHNSNIFTHCEIHPSMILGVAASVIPFPDHNQSPRNT 765
+ +H FT I L + A++ PF D NQSPRN
Sbjct: 681 IQ-------------------NNVHTHVEFTPTNI-----LSILANLTPFSDFNQSPRNM 716
Query: 766 YQSAMGKQAMGVFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIA 825
YQ MGKQ MG R D L Q P+ + P G NA+VA+
Sbjct: 717 YQCQMGKQTMGTPGVALCHRSDNKLYRLQTGQTPIVKANLYDDYGMDNFPNGFNAVVAVI 776
Query: 826 CYSGYNQEDSMIMNQSSIDRGLFRSLFFRSY---MDQEKRIGMSITESFEKPHRTNTLRM 882
Y+GY+ +D+MI+N+S+ +RG +++ + + G IT+ F
Sbjct: 777 SYTGYDMDDAMIINKSADERGFGYGTMYKTEKVDLALNRNRGDPITQHF----GFGNDEW 832
Query: 883 KHGTYDKLDDDGLIAPGVRVSGDDMIIGKTTPIPPDAEELGQRTAFHSKRDASTPLRSTE 942
+KLD+DGL G V D PI ++ +T + +
Sbjct: 833 PKEWLEKLDEDGLPYIGTYVEEGD-------PICAYFDDTLNKTKIKTYHSSEPAYIEEV 885
Query: 943 NGIVDQVLITTNQEGLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRTEDMPFTAEG 1002
N I D+ + + L+ V ++ R + PQIGDKF+SRHGQKG + T DMPF+ G
Sbjct: 886 NLIGDE---SNKFQELQTVSIKYRIRRTPQIGDKFSSRHGQKGVCSRKWPTIDMPFSETG 942
Query: 1003 VVPDLIINPHAIPSRMTVAHLIECLLSKVAALSGNEGDASPF----TDITVDGISRLLRE 1058
+ PD+IINPHA PSRMT+ +E L K AL G D++P+ D D L +
Sbjct: 943 IQPDIIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWIFNEDDTPADYFGEQLAK 1002
Query: 1059 HGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEG 1118
GY G E MY+G TG++L A I+ G YYQRLRHMV+DK R+ GP+ LT QPV+G
Sbjct: 1003 AGYNYHGNEPMYSGATGEELRADIYVGVVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKG 1062
Query: 1119 RSRDGGLRFGEMERDCMIAHGAAAFLKERLMEASDAFRVHICGICG 1164
R R GG+R GEMERD +I HG + L++RL+ +SD + +C CG
Sbjct: 1063 RKRHGGIRVGEMERDALIGHGTSFLLQDRLLNSSDYTQASVCRECG 1108
>At1g29940 [K] KOG0216 RNA polymerase I second largest subunit
Length = 1114
Score = 309 bits (791), Expect = 2e-83
Identities = 191/512 (37%), Positives = 273/512 (53%), Gaps = 60/512 (11%)
Query: 736 THCEIHPSMILGVAASVIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYY 795
TH EIHP+ ++ V A++ P+ DHNQSPRN YQ M KQ M R D L
Sbjct: 611 THEEIHPTGMISVVANLTPWSDHNQSPRNMYQCQMAKQTMAYSTQALQFRADQKIYHLQT 670
Query: 796 PQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRS 855
PQ P+ T+ E P G NAIVA+ ++G++ ED+MI+N+SS++RG+ +++
Sbjct: 671 PQSPVVRTKTYTTYSIDENPTGTNAIVAVLAHTGFDMEDAMILNKSSVERGMCHGQIYQT 730
Query: 856 ----YMDQEKRIGMSITESFEKPHRTNTLRMKHGTYDKLDDDGLIAPGVRVSGDDMIIGK 911
DQ R +S K R +T + +H ++D DGL + G ++ D+
Sbjct: 731 ENIDLSDQNSRF-----DSGSKSFRRSTNKAEHF---RIDADGLPSVGQKLYPDE----- 777
Query: 912 TTPIPPDAEELGQRTAFHSKRDASTPLRSTENGIVDQVLITT-NQEGLKFVKVRVRTTKI 970
P +E+ +T H KR + P+ IVD V + +++ + +R R +
Sbjct: 778 --PYCSIYDEVTNKTR-HMKRKGTDPV------IVDFVSVDMKSKKHPQRANIRFRHARN 828
Query: 971 PQIGDKFASRHGQKGTIGITYRTEDMPFTA-EGVVPDLIINPHAIPSRMTVAHLIECLLS 1029
P IGDKF+SRHGQKG + DMPF G+ PDLIINPHA PSRMT+A L+E + +
Sbjct: 829 PIIGDKFSSRHGQKGVCSQLWPDIDMPFNGVTGMRPDLIINPHAFPSRMTIAMLLESIAA 888
Query: 1030 KVAALSGNEGDASPFTD--------------ITVDGISRLLREHGYQSRGFEVMYNGHTG 1075
K +L G DA+PF D + VD + +L+E G+ G E +Y+G+ G
Sbjct: 889 KGGSLHGKFVDATPFRDAVKKTNGEEESKSSLLVDDLGSMLKEKGFNHYGTETLYSGYLG 948
Query: 1076 KKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCM 1135
+L +IF GP YYQRLRHMV DK R+ G + LT QP++GR R GG+RFGEMERD +
Sbjct: 949 VELKCEIFMGPVYYQRLRHMVSDKFQVRSTGQVDQLTHQPIKGRKRGGGIRFGEMERDSL 1008
Query: 1136 IAHGAAAFLKERLMEASDAFRVHICGICG--------------LMSVVAKL----KHNQF 1177
+AHGA+ L +RL +SD +C +CG L+ + KL +
Sbjct: 1009 LAHGASYLLHDRLHTSSDHHIADVCSLCGSLLTSSVVNVQQKKLIQEIGKLPPGRTPKKV 1068
Query: 1178 ECRSCKNKIDIYQVHIPYAAKLLFQELMAMNI 1209
C SCK + V +PY + L EL +MNI
Sbjct: 1069 TCYSCKTSKGMETVAMPYVFRYLAAELASMNI 1100
>SPBP23A10.07 [K] KOG0216 RNA polymerase I second largest subunit
Length = 1227
Score = 301 bits (770), Expect = 5e-81
Identities = 192/517 (37%), Positives = 263/517 (50%), Gaps = 60/517 (11%)
Query: 734 IFTHCEIHPSMILGVAASVIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANIL 793
+ TH E P+ +L + A++ PF D NQSPRN YQ MGKQ MG T R D L
Sbjct: 723 VSTHVEYSPTNVLSIVANMTPFSDFNQSPRNMYQCQMGKQTMGTPGTALRYRTDNKLYRL 782
Query: 794 YYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFF 853
Q P+ + P G NA+VA+ Y+GY+ ED+MI+N+S+ +RG +
Sbjct: 783 QTGQTPVVRPKLHNTYGLDHYPNGTNAVVAVISYTGYDMEDAMILNKSAHERGFGYGTVY 842
Query: 854 RSY---MDQEKRIGMSITESFEKPHRTNTLRMKHGTYDKLDDDGLIAPGVRVSGDDMIIG 910
+ + Q++R G + F + R KLD DGL G+++ D I+
Sbjct: 843 KGESFDLSQKRRRGEPVVHHFGFAPGSTPRRE---WLQKLDADGLPFIGIKLEDGDPIVA 899
Query: 911 KTTPIPPDAEELGQR--TAFHSKRDASTPLRSTENGIVDQVLITTNQEG---LKFVKVRV 965
E GQ +H TE G VD+V + N G + + V++
Sbjct: 900 YYD------ESTGQNFIETYHG----------TEPGFVDEVRLLGNDVGDSECQQIHVKL 943
Query: 966 RTTKIPQIGDKFASRHGQKGTIGITYRTEDMPFTAEGVVPDLIINPHAIPSRMTVAHLIE 1025
R T+ P IGDKF+SRHGQKG + T DMPFT G+ PD+IINPHA PSRMT+ IE
Sbjct: 944 RITRSPIIGDKFSSRHGQKGICSQKWPTVDMPFTESGMQPDIIINPHAFPSRMTIGMFIE 1003
Query: 1026 CLLSKVAALSGNEGDASPFT----DITVDGISRLLREHGYQSRGFEVMYNGHTGKKLMAQ 1081
L K A G D++PF D L + GY G E MY+G TG+++ A
Sbjct: 1004 SLAGKAGACHGLAQDSTPFIYSEQQTAADYFGEQLVKAGYNYHGNEPMYSGITGQEMKAD 1063
Query: 1082 IFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAA 1141
I+ G YYQRLRHMV DK R GP+ LTRQPV+GR R GG+RFGEMERD +I HG +
Sbjct: 1064 IYIGVVYYQRLRHMVSDKFQVRTTGPIHNLTRQPVKGRKRAGGIRFGEMERDAVIGHGTS 1123
Query: 1142 AFLKERLMEASDAFRVHICGICG-LMSVVAKLKHN------QFECRSC-------KNKID 1187
+++RLM SD + +C CG ++S+++ + N + CRSC ++ D
Sbjct: 1124 FLMQDRLMNCSDYAQSWVCRDCGSIISIMSTISMNGVGSASEVRCRSCAKPALGLEDTSD 1183
Query: 1188 IYQ---------------VHIPYAAKLLFQELMAMNI 1209
I+Q + +P L EL AMNI
Sbjct: 1184 IWQDGSGKKFVGGTNTTLIALPSVFNYLTAELTAMNI 1220
Score = 100 bits (249), Expect = 1e-20
Identities = 132/571 (23%), Positives = 224/571 (39%), Gaps = 76/571 (13%)
Query: 38 VSQQLDSFNQF-----INYTIQDLILEDSTLILEQLAQHTTETDNISRKYEISFGKIYLA 92
V +DSFN +NY ++++ + + Q K ++ +A
Sbjct: 82 VKPHVDSFNALTNAGLLNYAVKEI---GEKCAFDSITQEEGGALKFGNKISFRVDEVQIA 138
Query: 93 KPSMT--ESDGVSHAMYPQEARLRNLTYASGLFVEIQKRTYQAIDIPGRDLKYXXXXXXX 150
KP ++ E ++ +YP EAR R TY S L + K ++ P +
Sbjct: 139 KPMLSSRERSSINRKVYPAEARERLTTYKSRL---VLKFSWSVNGGPRQS---------- 185
Query: 151 XXXXXXXXXFIGRVPIMLRSKYCLLDDLTESDLYRLKECPFDMGGYFIINGSEK-----V 205
+G +PIM+RS C L+ L+ ++L KE +MGGYFI+NG EK +
Sbjct: 186 ------EMREVGMIPIMVRSNRCHLEGLSPAELIAHKEESEEMGGYFIVNGIEKLIRMLI 239
Query: 206 LIAQERSAGNIVQVFKKSAPSPISHIAEIRSALEKGSRFISTLQVKLYGREGSTS-RTIK 264
L + I F S + IR S +TL Y G T R
Sbjct: 240 LPKRNHPTAIIRPSFANRGTSYSQYGLSIRCVRPDQSSLTNTLH---YLNNGVTMFRFHW 296
Query: 265 ATLPYIKQDIPIVIIFRALGIIPDGEILEHIC-YDVNDWQMLEMLKPCVE--EGFVIQDR 321
Y+ IP ++I +AL D EI E I D+ + + + ++ + + + + +
Sbjct: 297 RKNEYL---IPSMMILKALLETSDKEIFEGIVGKDLGNTFLTDRVELMLRAYKSYGLYSQ 353
Query: 322 ETALDFIGRR-GTALGIKKE-KRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRL 379
L ++G + LG+ ++ ++ + +LQK L H+ + + K L +MI +L
Sbjct: 354 TETLQYLGSKFRVVLGVAEDLTDVEVGRFLLQKVVLVHLREAKD----KFRLLLFMIRKL 409
Query: 380 LLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRDILRFMQRSVEEAK---DF 436
D+ D + + L G L Q+ K I + V + DF
Sbjct: 410 YALVAGECCADNPDSPQHQEILLGGFLYGQILKEKIEDWLNSIRAQINLDVRRSAPGVDF 469
Query: 437 NLKLAVKA------TTITAGLKYALATGNW-GEQKKSMSSRAGVSQVLNRYTYSSTLSHL 489
+ + + I L+Y L+TGN + G + V + + LSH
Sbjct: 470 SDRKYLTRVFSKINNDIGTKLQYFLSTGNLVSNTGLDLQQATGYTVVAEKLNFYRFLSHF 529
Query: 490 RRTNT-PIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMS----------- 537
R + + K R+L WG +CP TP+G CGL+ +L+
Sbjct: 530 RMVHRGAFFAELKTTTVRKLLPEAWGFMCPVHTPDGSPCGLLNHLARKCEIVTHPSDVSQ 589
Query: 538 ----CISVGTDPLPIITFLNEWGMEPLEDYI 564
+S+G DP ++ + WG L+ I
Sbjct: 590 IPSLLLSLGVDPPSVVGHESGWGCVQLDGKI 620
>Hs14149912 [K] KOG0216 RNA polymerase I second largest subunit
Length = 459
Score = 296 bits (759), Expect = 1e-79
Identities = 181/471 (38%), Positives = 245/471 (51%), Gaps = 34/471 (7%)
Query: 732 SNIFTHCEIHPSMILGVAASVIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMAN 791
+ + TH E+ P +L V A+ IPF D NQSPRN YQ MGKQ MG L Y R D
Sbjct: 12 AGVTTHQELFPHSLLSVIANFIPFSDLNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLY 71
Query: 792 ILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSL 851
L PQ PL +Y P G NAIVA+ Y+GY+ ED+MI+N++S +RG
Sbjct: 72 RLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGS 131
Query: 852 FFRSYMDQEKRIGMSITESFEKPHRTNTLRMKHG---TYDKLDDDGLIAPGVRVSGDDMI 908
++S + ++E ++ + +K G KLDDDGL G ++ D
Sbjct: 132 VYKSEF-------IDLSEKIKQGDSSLVFGIKPGDPRVLQKLDDDGLPFIGAKLQYGD-- 182
Query: 909 IGKTTPIPPDAEELGQRTAFHSKRDASTPLRSTENGIVDQVLITTNQEG---LKFVKVRV 965
P L T +S EN +VD + + +N G K V + +
Sbjct: 183 --------PYYSYLNLNTG----ESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITM 230
Query: 966 RTTKIPQIGDKFASRHGQKGTIGITYRTEDMPFTAEGVVPDLIINPHAIPSRMTVAHLIE 1025
R + P IGDKFASRHGQKG + + EDMPFT G+VPD++ NPH PSRMT+ LIE
Sbjct: 231 RVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIE 290
Query: 1026 CLLSKVAALSGNEGDASPFT----DITVDGISRLLREHGYQSRGFEVMYNGHTGKKLMAQ 1081
+ K AAL G DA+PF + ++ +L+ GY G E +Y+G +G +L A
Sbjct: 291 SMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEAD 350
Query: 1082 IFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAA 1141
IF G YYQRLRHMV DK R G +T QP+ GR+ GG+RFGEMERD ++AHG +
Sbjct: 351 IFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTS 410
Query: 1142 AFLKERLMEASDAFRVHICGICGL-MSVVAKLKHNQFECRSCKNKIDIYQV 1191
L +RL SD H+C + +S V + F + KI +Y V
Sbjct: 411 FLLHDRLFNCSDRSVAHVCEVWQFTLSTVGEA--TPFLVCHAQQKIQLYSV 459
>ECU03g0440 [K] KOG0216 RNA polymerase I second largest subunit
Length = 1062
Score = 296 bits (759), Expect = 1e-79
Identities = 188/485 (38%), Positives = 254/485 (51%), Gaps = 64/485 (13%)
Query: 739 EIHPSMILGVAASVIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYYPQK 798
EI S ILG+ A +IP+ DHNQSPRN YQ M KQA+G N R D + Y Q
Sbjct: 622 EIDKSGILGIIAGLIPYSDHNQSPRNMYQCQMAKQAIGHPAHNIRTRTDPTMYTVNYLQS 681
Query: 799 PLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMD 858
P+ T E +K + P G N +VA+ Y+ Y+ ED++++N++SIDRGLF Y+
Sbjct: 682 PIVRTEGYEMVK--DYPVGINCMVAVLSYTAYDMEDALVINKNSIDRGLFTG-----YVY 734
Query: 859 QEKRIGMSITESFEKPHRTNTLRMKHGTYDKLDDDGLIAPGVRVSGDDMIIGKTTPIPPD 918
+ +++ + F TY L + G R+ DD + + D
Sbjct: 735 KTEKVPLDKGYFF--------------TY-------LPSVGQRIQKDDTLYRY---VDQD 770
Query: 919 AEELGQRTAFHSKRDASTPLRSTENGIVDQVLITTNQEGLKFVKVRVRTTKIPQIGDKFA 978
E +R TE GIVD V + N G + +R + P IGDKF+
Sbjct: 771 GREYEKRYL------------GTEPGIVDIVRVFENDMGERCATFTIRIVRSPMIGDKFS 818
Query: 979 SRHGQKGTIGITYRTEDMPFTAEGVVPDLIINPHAIPSRMTVAHLIECLLSKVAALSGNE 1038
SRHGQKG + + DMPFT G VPD+IINPHA PSRMT+ LIE + KV LSGNE
Sbjct: 819 SRHGQKGVCSMHWPGIDMPFTESGCVPDIIINPHAFPSRMTIGMLIESIAGKVGCLSGNE 878
Query: 1039 GDASPFTDITV--------------DGISRLLREHGYQSRGFEVMYNGHTGKKLMAQIFF 1084
D + F + + + LR HG+ G E MY+G G + A IF
Sbjct: 879 QDGTVFKKSFLLEQEEGDDEKVRRKEYLCSELRRHGFNYYGNEPMYSGVAGNEFRADIFV 938
Query: 1085 GPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAAFL 1144
G YYQRL+HMV DK R +G + TRQPV GR + GG+RFGEMERD +I+HGA+ L
Sbjct: 939 GVVYYQRLKHMVGDKFQVRTKGAVVSTTRQPVGGRKKRGGIRFGEMERDALISHGASYLL 998
Query: 1145 KERLMEASDAFRVHICGICGLMSVVAKLKHNQFECRSCKNKIDIYQVHIPYAAKLLFQEL 1204
++RL+++SD+ CG C + L N +C C + D+ V +PY K L EL
Sbjct: 999 QDRLLKSSDSTVFEYCGTCRSI-----LFTNNGDC-ICGSS-DLKAVEMPYVFKYLCCEL 1051
Query: 1205 MAMNI 1209
+AMNI
Sbjct: 1052 LAMNI 1056
Score = 89.7 bits (221), Expect = 2e-17
Identities = 145/644 (22%), Positives = 246/644 (37%), Gaps = 80/644 (12%)
Query: 78 ISRKYEISFGKIYLAKPSMTESDGVS--HAMYPQEARLRNLTYASGLFVEIQKRTYQAID 135
+ K +I +I++A P +++ D +S + P+E R R LTY + V +
Sbjct: 46 VKGKTKIIVEEIHVAPPFLSDKDHISVDRRLLPRECRERGLTYKGKMVVRVSLF------ 99
Query: 136 IPGRDLKYXXXXXXXXXXXXXXXXFIGRVPIMLRSKYCLLDDLTESDLYRLKECPFDMGG 195
D K+ G PIM+RS C L+ + + + E ++GG
Sbjct: 100 ---HDNKHVVTEDKSA----------GHFPIMVRSTLCHLNGIKNKN--EVGEDEDEIGG 144
Query: 196 YFIINGSEKVLIAQERSAGNIVQVFKKSAPSPI--SHIAEIRSALEKGSRFISTLQVKLY 253
YFIING ++ + N + FK + ++ +R G I + Y
Sbjct: 145 YFIINGIDRFIRFNIMQKRNHIFAFKMRKKTSFFSDYMVSMRCV---GRDEIGHMNFLHY 201
Query: 254 GREGSTSRTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVE 313
+G+ IK + P+V++ +AL D E+ + Q L C
Sbjct: 202 CTDGNV--VIKIFHKKYEFLFPLVLVLKALVNTTDEELFGAL----GGGQRAVHLLKCFA 255
Query: 314 EGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQ-LEGFESRKAFFL 372
E V R LD+IG R +A+ + E + + A++IL K + H++ L+ F FL
Sbjct: 256 EHNVFS-RTECLDYIGSRFSAI-LNFESKAEVAEEILSKYVVSHLSSNLDKFN-----FL 308
Query: 373 GYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLF----------------KTLF- 415
+L + +DD D L +++ KT +
Sbjct: 309 ILAARKLFSFVDNEITEDDPDSPSNHELGTETQIISSFLRDRIEEFMRFFSMMCRKTYYK 368
Query: 416 -----RKLTRDILRFMQRSVEEAKDFNLKLAVKATTITAGLKYALATGNWGEQKKSMSS- 469
RKL D + +E ++ K T+I G + L + S S
Sbjct: 369 LEGEKRKLEGDSVTESGFCEDELDISKIREIFKRTSINIGQRMELFLSSGSITLTSCSDI 428
Query: 470 --RAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQAC 527
G S R + LSH R N + R+L WG +CP TP+G C
Sbjct: 429 LQTLGFSITAERINFYKYLSHFRGVNRGTHIPSMVTSIRKLRPESWGFLCPVHTPDGAPC 488
Query: 528 GLVKNLSLMSCISVGTDPLPIITFLNEWGMEPLEDYIPHQSPDATRVFVNGVWHGIHRNP 587
G++ +++ + + V D L E+G+ P + P V VNG G +P
Sbjct: 489 GVLLHMAKEAEV-VSRDDDFNTDILFEFGVVPSIRGVEMGIP----VLVNGRVVGSTSSP 543
Query: 588 AKLVDTIRKLRRKGDITPEVSIVRDIRE-KELKIFTDAGRVYRPLFIVDENPETGRKELK 646
+ L +R+ R + + EV + + + IF+ GR R + N G +E
Sbjct: 544 SDLTRMVREYRNRNGLMIEVVYTSEPKMFPSVCIFSSVGRFARKVM----NRRLGSEEW- 598
Query: 647 VKKGHVRKLMLTEYQDIEGGFDDEEEMNYTWTSLLNEGLVEYID 690
G + ++ L + G D E++ + + GL+ Y D
Sbjct: 599 --IGIMEQVFLNIDTEEGAGDGDYYEIDKSGILGIIAGLIPYSD 640
>Hs8922399 [K] KOG0215 RNA polymerase III second largest subunit
Length = 343
Score = 293 bits (751), Expect = 9e-79
Identities = 152/331 (45%), Positives = 204/331 (60%), Gaps = 14/331 (4%)
Query: 887 YDKLDDDGLIAPGVRVSGDDMIIGKTTP----IPPDAEELGQRTAFHSKRDASTPLRSTE 942
++ LD DG+ +PG +V +++ K+ P IP + + Q+ + +D +
Sbjct: 16 HEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQY---KDVPITYKGAT 72
Query: 943 NGIVDQVLITTNQEGLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRTEDMPFTAEG 1002
+ +++V+I++N E +K+ +R T+ P+IGDKF+SRHGQKG G+ EDMPF G
Sbjct: 73 DSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSG 132
Query: 1003 VVPDLIINPHAIPSRMTVAHLIECLLSKVAALSGNEGDASPFTDITVDGISRLLREHGYQ 1062
+ PD+I+NPH PSRMTV LIE L K L G + F V + L HGY
Sbjct: 133 ICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVKDVCEDLVRHGYN 192
Query: 1063 SRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRD 1122
G + + +G TG+ L A I+FGP YYQ+L+HMV DK+HARARGP VLTRQP EGRSRD
Sbjct: 193 YLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRD 252
Query: 1123 GGLRFGEMERDCMIAHGAAAFLKERLMEASDAFRVHICGICGLMSVVAKLKHNQFECRSC 1182
GGLR GEMERDC+I +GA+ L ERLM +SDAF V +CG CGL+ C C
Sbjct: 253 GGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGYSG-------WCHYC 305
Query: 1183 KNKIDIYQVHIPYAAKLLFQELMAMNIAPRL 1213
K+ + + IPYA KLLFQEL +MNI PRL
Sbjct: 306 KSSCHVSSLRIPYACKLLFQELQSMNIIPRL 336
>AtCh015 [K] KOG0214 RNA polymerase II second largest subunit
Length = 1072
Score = 140 bits (352), Expect = 2e-32
Identities = 108/376 (28%), Positives = 167/376 (43%), Gaps = 41/376 (10%)
Query: 813 ELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKRIGMSITESFE 872
EL G+N +VA + GYN ED++++++ + ++ S R Y + + + E
Sbjct: 650 ELALGKNILVAYMPWEGYNFEDAVLISECLVYGDIYTSFHIRKY-EIQTHVTTQGPERIT 708
Query: 873 K--PHRTNTLRMKHGTYDKLDDDGLIAPGVRVSGDDMIIGKTTP--------IPPDA--- 919
K PH L LD +G++ G V D+++GK TP P D
Sbjct: 709 KEIPHLEGRLLRN------LDKNGIVMLGSWVETGDILVGKLTPQVAKESSYAPEDRLLR 762
Query: 920 EELGQRTAFHSKRDASTPLRSTENGIVDQVLITTNQEGLKF----VKVRVRTTKIPQIGD 975
LG + + + P+ G V V + G + ++V + + ++GD
Sbjct: 763 AILGIQVSTSKETCLKLPIGG--RGRVIDVRWVQKKGGSSYNPEIIRVYISQKREIKVGD 820
Query: 976 KFASRHGQKGTIGITYRTEDMPFTAEGVVPDLIINPHAIPSRMTVAHLIECLLSKVAALS 1035
K A RHG KG I +DMP+ +G D++ NP +PSRM V + EC L +L
Sbjct: 821 KVAGRHGNKGIISKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLL 880
Query: 1036 GNEGDASPFTDITVDGISR-LLREHGYQSR--------------GFEVMYNGHTGKKLMA 1080
+PF + SR L+ Y++ G +++G TG
Sbjct: 881 DRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPFEQ 940
Query: 1081 QIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGA 1140
+ G Y +L H VDDKIH R+ G ++T+QP+ GRS+ GG R GEME + G
Sbjct: 941 PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRSKQGGQRVGEMEVWALEGFGV 1000
Query: 1141 AAFLKERLMEASDAFR 1156
A L+E L SD R
Sbjct: 1001 AHILQEMLTYKSDHIR 1016
>Hs22058718 [K] KOG0215 RNA polymerase III second largest subunit
Length = 273
Score = 114 bits (286), Expect = 7e-25
Identities = 85/261 (32%), Positives = 128/261 (48%), Gaps = 50/261 (19%)
Query: 25 WTVISAFFREKGLVSQQLDSFNQFINYTIQDLILEDSTLILEQLAQHTTETDNISRKYEI 84
W ++ AF + KGLV Q +DSFN FIN I+ ++ + + T + + +
Sbjct: 27 WRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKV-----------TSDADPMWYL 75
Query: 85 SFGKIYLAKPSMTESDGVSHAMYPQEARLRNLTYASGLFVEIQ-KRTYQAIDIPGRDLKY 143
+ IY+ P + ES V+ + P E RLR++TY++ + V+I+ R Q I
Sbjct: 76 KYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRI--------- 126
Query: 144 XXXXXXXXXXXXXXXXFIGRVPIMLRSKYCLLDDLTESDLYRLKECPFDMGGYFIINGSE 203
IGR+PIMLRS C+L T ++ +L ECP D GGYFI+ G E
Sbjct: 127 -----------IRNALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVE 175
Query: 204 KVLIAQERSAGN--IVQVFKKSAPSPISHIAEIRSALEKGSRF-ISTLQVKLYGREGSTS 260
KV++ QE+ + N IV+ +K A + S EK SR ++ Q + Y R + S
Sbjct: 176 KVILIQEQLSKNRIIVEADRKGAVG----ASVTSSTHEKKSRTNMAVKQGRFYLRHNTLS 231
Query: 261 RTIKATLPYIKQDIPIVIIFR 281
+DIPIVIIF+
Sbjct: 232 -----------EDIPIVIIFK 241
>Hs9506619 [K] KOG0216 RNA polymerase I second largest subunit
Length = 336
Score = 52.0 bits (123), Expect = 6e-06
Identities = 53/182 (29%), Positives = 83/182 (45%), Gaps = 21/182 (11%)
Query: 160 FIGRVPIMLRSKYCLLDDLTESDLYRLKECPFDMGGYFIINGSEKV---LIAQERS--AG 214
F+G VPIM++SK C L +L L E +MGGYFIING EKV LI R+
Sbjct: 133 FLGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIA 192
Query: 215 NIVQVFKKSAPSPISHIAEIRSALEKGSRFISTLQVKLYGREGSTSRTIKATLPYIKQ-- 272
I +K P + + E+ S + + L+ E T+ Y K+
Sbjct: 193 MIRPKWKTRGPGYTQYGVSMHCVREEH----SAVNMNLHYLENG---TVMLNFIYRKELF 245
Query: 273 DIPIVIIFRALGIIPDGEILEHICYDVNDWQML-----EMLKPCVEEGFVIQDRETALDF 327
+P+ +AL D +I + + D L +ML+ +EEG++ Q + L++
Sbjct: 246 FLPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGWLTQ--KQVLNY 303
Query: 328 IG 329
+G
Sbjct: 304 LG 305
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.321 0.138 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,049,270
Number of Sequences: 60738
Number of extensions: 3092610
Number of successful extensions: 6901
Number of sequences better than 1.0e-05: 26
Number of HSP's better than 0.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6679
Number of HSP's gapped (non-prelim): 45
length of query: 1221
length of database: 30,389,216
effective HSP length: 118
effective length of query: 1103
effective length of database: 23,222,132
effective search space: 25614011596
effective search space used: 25614011596
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)