ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII1415 suspect: LH J KOG4089 Translation, ribosomal structure and biogenesis Predicted mitochondrial ribosomal protein L23
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII1415 506136 506858 241
(241 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YDR405w [J] KOG4089 Predicted mitochondrial ribosomal protein L23 262 3e-70
SPAC31A2.08 [J] KOG4089 Predicted mitochondrial ribosomal protei... 60 4e-09
>YDR405w [J] KOG4089 Predicted mitochondrial ribosomal protein L23
Length = 263
Score = 262 bits (670), Expect = 3e-70
Identities = 126/222 (56%), Positives = 167/222 (74%), Gaps = 3/222 (1%)
Query: 12 LRNLATAVETESTVAVKASQFKRPRQSVQSRILEYTREAIKTEKPHFKVGGAELYFPKAR 71
+R+LA+ VE+ S + K+ + +V +I ++T+ I+ K HFKVGG ++YFPKAR
Sbjct: 31 IRSLASVVESSSKILDKSGSDREVDINVSEKIYKWTKAGIEQGKEHFKVGGNKVYFPKAR 90
Query: 72 VILLRPNAKHTPYQAKFIVPKSFNKLDLRDYLFHLYGLRALNVTTQLLHARYTRATPVSP 131
+ILLRPNAKHTPYQAKFIVPKSFNKLDLRDYL+H+YGLRA+N+TTQLLH ++ R +
Sbjct: 91 IILLRPNAKHTPYQAKFIVPKSFNKLDLRDYLYHIYGLRAMNITTQLLHGKFNRMNLQTT 150
Query: 132 RYRGPQIKKMTIDMAEPFIWPAE--PEDKSAWNTEFQKELEKYRNDRMR-LGSDANKPSK 188
R+R PQIKKMTI+M EPFIWP E P++ S W++ +EKYR +R+ LGSDANKP
Sbjct: 151 RFREPQIKKMTIEMEEPFIWPEEPRPDENSFWDSTTPDNMEKYREERLNCLGSDANKPGT 210
Query: 189 AFDGVLGPYQETAKPFIPRFLKRRLVNKKAREAKKEQYLEQI 230
AFDGV+GPY+ A+PFIPRFLKR + NK+ R A + Q +++
Sbjct: 211 AFDGVVGPYERVAQPFIPRFLKREIDNKRERHAAELQRADKL 252
>SPAC31A2.08 [J] KOG4089 Predicted mitochondrial ribosomal protein L23
Length = 161
Score = 59.7 bits (143), Expect = 4e-09
Identities = 47/182 (25%), Positives = 80/182 (43%), Gaps = 26/182 (14%)
Query: 59 KVGGAEL-YFPKARVILLRPNAKHTPYQAKFIVPKSFNKLDLRDYLFHLYGLRALNVTTQ 117
K+ G L YFP L R P A F VP NK D+RDYL H+Y L+ ++V ++
Sbjct: 3 KIAGKRLVYFPNITFTLCR-GLNLQPKFAVFRVPLHVNKFDVRDYLQHVYNLKVVSVKSR 61
Query: 118 LLHARYTRATPVSPRYRGPQIKKMTIDMAEPFIWPAEPEDKSAWNTEFQKELEKYRNDRM 177
+ + R + R K++ ++M EPF++P P D W + +
Sbjct: 62 IYQGKLFR-NQLGQVKRPQSEKRVIVEMEEPFVYPNAPNDLKDWQ----------EGELL 110
Query: 178 RLGSDANKPSKAFDGVLGPYQETAKPFIPRFLKRRLVNKKAREAKKEQYLEQIKKVSEVL 237
GS+ S+ P + + + VN++ + + +Q LE +K++ +L
Sbjct: 111 PDGSNVKTLSR-------------YPKVLEQVDMKRVNEELSKLQDKQILESQQKIARLL 157
Query: 238 AK 239
K
Sbjct: 158 KK 159
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.318 0.134 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,820,962
Number of Sequences: 60738
Number of extensions: 576582
Number of successful extensions: 1583
Number of sequences better than 1.0e-05: 2
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1579
Number of HSP's gapped (non-prelim): 2
length of query: 241
length of database: 30,389,216
effective HSP length: 103
effective length of query: 138
effective length of database: 24,133,202
effective search space: 3330381876
effective search space used: 3330381876
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)