ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII1486 good J KOG0815 Translation, ribosomal structure and biogenesis 60S acidic ribosomal protein P0
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII1486 534006 533074 -311
(311 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YLR340w [J] KOG0815 60S acidic ribosomal protein P0 459 e-129
SPCC18.14c [J] KOG0815 60S acidic ribosomal protein P0 313 2e-85
Hs4506667 [J] KOG0815 60S acidic ribosomal protein P0 283 2e-76
Hs20536934 [J] KOG0815 60S acidic ribosomal protein P0 277 2e-74
7296522 [J] KOG0815 60S acidic ribosomal protein P0 268 6e-72
CE09655 [J] KOG0815 60S acidic ribosomal protein P0 266 4e-71
At3g11250 [J] KOG0815 60S acidic ribosomal protein P0 236 3e-62
At3g09200 [J] KOG0815 60S acidic ribosomal protein P0 235 5e-62
At2g40010 [J] KOG0815 60S acidic ribosomal protein P0 233 2e-61
ECU07g0820 [J] KOG0815 60S acidic ribosomal protein P0 184 1e-46
Hs20541776 [J] KOG0815 60S acidic ribosomal protein P0 169 4e-42
Hs22061057 [J] KOG0815 60S acidic ribosomal protein P0 134 1e-31
Hs17437153_1 [J] KOG0815 60S acidic ribosomal protein P0 115 8e-26
Hs22057309 [J] KOG0815 60S acidic ribosomal protein P0 112 7e-25
Hs17443776 [J] KOG0815 60S acidic ribosomal protein P0 89 8e-18
Hs17437661 [J] KOG0815 60S acidic ribosomal protein P0 73 5e-13
Hs22060836 [J] KOG0815 60S acidic ribosomal protein P0 62 8e-10
Hs22060831 [J] KOG0815 60S acidic ribosomal protein P0 62 8e-10
7303797 [A] KOG0816 Protein involved in mRNA turnover 62 1e-09
At1g25260 [A] KOG0816 Protein involved in mRNA turnover 59 7e-09
Hs18490987 [A] KOG0816 Protein involved in mRNA turnover 57 4e-08
>YLR340w [J] KOG0815 60S acidic ribosomal protein P0
Length = 312
Score = 459 bits (1181), Expect = e-129
Identities = 233/312 (74%), Positives = 253/312 (80%), Gaps = 1/312 (0%)
Query: 1 MGGVREKKAEYFAKLREYLEEYKSVFVVGVDNVSSQQMHEVRKNLRGRAVVLMGKNTMVR 60
MGG+REKKAEYFAKLREYLEEYKS+FVVGVDNVSSQQMHEVRK LRGRAVVLMGKNTMVR
Sbjct: 1 MGGIREKKAEYFAKLREYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVR 60
Query: 61 RAVRGFISDFPDYEKLLPFVKGNVGFIFTNDSLQDIKEVIIXXXXXXXXXXXXXXXEDIW 120
RA+RGF+SD PD+EKLLPFVKGNVGF+FTN+ L +IK VI+ EDIW
Sbjct: 61 RAIRGFLSDLPDFEKLLPFVKGNVGFVFTNEPLTEIKNVIVSNRVAAPARAGAVAPEDIW 120
Query: 121 VLAVNTGMEPGKTSFFQALGVPTKIARGTIEIVSDVKVVDAGKRVGASEASLLNLLNISP 180
V AVNTGMEPGKTSFFQALGVPTKIARGTIEIVSDVKVVDAG +VG SEASLLNLLNISP
Sbjct: 121 VRAVNTGMEPGKTSFFQALGVPTKIARGTIEIVSDVKVVDAGNKVGQSEASLLNLLNISP 180
Query: 181 FTYGLTVVQVYDNGQVFPASILDITDDELISHFISAVNTIACVSLAAGYPTLPSVGHSLI 240
FT+GLTVVQVYDNGQVFP+SILDITD+EL+SHF+SAV+TIA +SLA GYPTLPSVGH+LI
Sbjct: 181 FTFGLTVVQVYDNGQVFPSSILDITDEELVSHFVSAVSTIASISLAIGYPTLPSVGHTLI 240
Query: 241 NNYKDLLAVAIAADYIYPEIEELKDRIENPDXXXXXX-XXXXXXXXXXXXXXXXXXXXXX 299
NNYKDLLAVAIAA Y YPEIE+L DRIENP+
Sbjct: 241 NNYKDLLAVAIAASYHYPEIEDLVDRIENPEKYAAAAPAATSAASGDAAPAEEAAAEEEE 300
Query: 300 XXDDDMGFGLFD 311
DDDMGFGLFD
Sbjct: 301 ESDDDMGFGLFD 312
>SPCC18.14c [J] KOG0815 60S acidic ribosomal protein P0
Length = 312
Score = 313 bits (803), Expect = 2e-85
Identities = 156/308 (50%), Positives = 205/308 (65%), Gaps = 1/308 (0%)
Query: 5 REKKAEYFAKLREYLEEYKSVFVVGVDNVSSQQMHEVRKNLRGRAVVLMGKNTMVRRAVR 64
+E KA+YF KLR E+Y S+FVV +DNVSSQQMH VRK LRG A ++MGKNTM+RRA+R
Sbjct: 5 KESKAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMR 64
Query: 65 GFISDFPDYEKLLPFVKGNVGFIFTNDSLQDIKEVIIXXXXXXXXXXXXXXXEDIWVLAV 124
G I+D P+ E+LLP V+GNVGF+FTN L++++E II D++V A
Sbjct: 65 GIINDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAG 124
Query: 125 NTGMEPGKTSFFQALGVPTKIARGTIEIVSDVKVVDAGKRVGASEASLLNLLNISPFTYG 184
NTGMEPGKTSFFQALG+PTKI RGTIEI SDV +V +VG SEA+LLN+LNISPFTYG
Sbjct: 125 NTGMEPGKTSFFQALGIPTKITRGTIEITSDVHLVSKDAKVGPSEATLLNMLNISPFTYG 184
Query: 185 LTVVQVYDNGQVFPASILDITDDELISHFISAVNTIACVSLAAGYPTLPSVGHSLINNYK 244
+ V+ +YD G VF ILD+++++LI H +SA + I +SL A YPT+ SV HS++N YK
Sbjct: 185 MDVLTIYDQGNVFSPEILDVSEEDLIGHLLSAASIITAISLGANYPTILSVMHSVVNAYK 244
Query: 245 DLLAVAIAADYIYPEIEELKDRIENPDXXXXXXX-XXXXXXXXXXXXXXXXXXXXXXXDD 303
+L+AV++A +Y + E+ K + +P D+
Sbjct: 245 NLVAVSLATEYTFEGTEQTKAFLADPSAFVVAAAPAAAAGGEAEAPAAEAAAEEEEESDE 304
Query: 304 DMGFGLFD 311
DMGFGLFD
Sbjct: 305 DMGFGLFD 312
>Hs4506667 [J] KOG0815 60S acidic ribosomal protein P0
Length = 317
Score = 283 bits (725), Expect = 2e-76
Identities = 138/308 (44%), Positives = 199/308 (63%), Gaps = 4/308 (1%)
Query: 8 KAEYFAKLREYLEEYKSVFVVGVDNVSSQQMHEVRKNLRGRAVVLMGKNTMVRRAVRGFI 67
K+ YF K+ + L++Y F+VG DNV S+QM ++R +LRG+AVVLMGKNTM+R+A+RG +
Sbjct: 10 KSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHL 69
Query: 68 SDFPDYEKLLPFVKGNVGFIFTNDSLQDIKEVIIXXXXXXXXXXXXXXXEDIWVLAVNTG 127
+ P EKLLP ++GNVGF+FT + L +I+++++ ++ V A NTG
Sbjct: 70 ENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTG 129
Query: 128 MEPGKTSFFQALGVPTKIARGTIEIVSDVKVVDAGKRVGASEASLLNLLNISPFTYGLTV 187
+ P KTSFFQALG+ TKI+RGTIEI+SDV+++ G +VGASEA+LLN+LNISPF++GL +
Sbjct: 130 LGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVI 189
Query: 188 VQVYDNGQVFPASILDITDDELISHFISAVNTIACVSLAAGYPTLPSVGHSLINNYKDLL 247
QV+DNG ++ +LDIT++ L S F+ V +A V L GYPT+ SV HS+IN YK +L
Sbjct: 190 QQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVL 249
Query: 248 AVAIAADYIYPEIEELKDRIENPDXXXXXXXXXXXXXXXXXXXXX----XXXXXXXXXDD 303
A+++ DY +P E++K + +P D+
Sbjct: 250 ALSVETDYTFPLAEKVKAFLADPSAFVAAAPVAAATTAAPAAAAAPAKVEAKEESEESDE 309
Query: 304 DMGFGLFD 311
DMGFGLFD
Sbjct: 310 DMGFGLFD 317
>Hs20536934 [J] KOG0815 60S acidic ribosomal protein P0
Length = 317
Score = 277 bits (708), Expect = 2e-74
Identities = 136/308 (44%), Positives = 195/308 (63%), Gaps = 4/308 (1%)
Query: 8 KAEYFAKLREYLEEYKSVFVVGVDNVSSQQMHEVRKNLRGRAVVLMGKNTMVRRAVRGFI 67
K+ YF K+ + L++Y F+VG DNV S+QM ++R +LRG+ VVLMGKNTM+R+A+RG +
Sbjct: 10 KSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKVVVLMGKNTMMRKAIRGHL 69
Query: 68 SDFPDYEKLLPFVKGNVGFIFTNDSLQDIKEVIIXXXXXXXXXXXXXXXEDIWVLAVNTG 127
+ P EKLLP + GNVGF+FT + L +I+++++ ++ V A NTG
Sbjct: 70 ENNPALEKLLPHIWGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTG 129
Query: 128 MEPGKTSFFQALGVPTKIARGTIEIVSDVKVVDAGKRVGASEASLLNLLNISPFTYGLTV 187
+ P KTSFFQALG+ TKI+RGTIEI+SDV+++ G +VGASEA+LLN+LNISPF++GL +
Sbjct: 130 LGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVI 189
Query: 188 VQVYDNGQVFPASILDITDDELISHFISAVNTIACVSLAAGYPTLPSVGHSLINNYKDLL 247
QV+DNG ++ +LD T++ L S F+ V +A V L GYPT+ SV HS+IN YK +L
Sbjct: 190 QQVFDNGSIYNPEVLDKTEETLHSRFLEGVRNVASVCLQTGYPTVASVPHSIINGYKRVL 249
Query: 248 AVAIAADYIYPEIEELKDRIENPDXXXXXXXXXXXXXXXXXXXXX----XXXXXXXXXDD 303
A+++ DY +P E +K + +P D+
Sbjct: 250 ALSVETDYTFPLAENVKAFLADPSAFVAAAPVAADTTAAPAAAAAPAKVEAKEESEESDE 309
Query: 304 DMGFGLFD 311
DMGFGLFD
Sbjct: 310 DMGFGLFD 317
>7296522 [J] KOG0815 60S acidic ribosomal protein P0
Length = 317
Score = 268 bits (686), Expect = 6e-72
Identities = 136/308 (44%), Positives = 189/308 (61%), Gaps = 4/308 (1%)
Query: 8 KAEYFAKLREYLEEYKSVFVVGVDNVSSQQMHEVRKNLRGRAVVLMGKNTMVRRAVRGFI 67
KA+YF K+ E +E+ F+VG DNV S+QM +R +LRG AVVLMGKNTM+R+A+RG +
Sbjct: 10 KAQYFIKVVELFDEFPKCFIVGADNVGSKQMQNIRTSLRGLAVVLMGKNTMMRKAIRGHL 69
Query: 68 SDFPDYEKLLPFVKGNVGFIFTNDSLQDIKEVIIXXXXXXXXXXXXXXXEDIWVLAVNTG 127
+ P EKLLP +KGNVGF+FT L ++++ ++ + + A NTG
Sbjct: 70 ENNPQLEKLLPHIKGNVGFVFTKGDLAEVRDKLLESKVRAPARPGAIAPLHVIIPAQNTG 129
Query: 128 MEPGKTSFFQALGVPTKIARGTIEIVSDVKVVDAGKRVGASEASLLNLLNISPFTYGLTV 187
+ P KTSFFQAL +PTKI++GTIEI++DV ++ G +VGASEA+LLN+LNISPF+YGL V
Sbjct: 130 LGPEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEATLLNMLNISPFSYGLIV 189
Query: 188 VQVYDNGQVFPASILDITDDELISHFISAVNTIACVSLAAGYPTLPSVGHSLINNYKDLL 247
QVYD+G +F ILDI ++L + F V +A V L+ GYPT+ S HS+ N +K+LL
Sbjct: 190 NQVYDSGSIFSPEILDIKPEDLRAKFQQGVANLAAVCLSVGYPTIASAPHSIANGFKNLL 249
Query: 248 AVAIAADYIYPEIEELKDRIENPDXXXXXXXXXXXXXXXXXXXXXXXX----XXXXXXDD 303
A+A + + E +K+ I++P DD
Sbjct: 250 AIAATTEVEFKEATTIKEYIKDPSKFAAAASASAAPAAGGATEKKEEAKKPESESEEEDD 309
Query: 304 DMGFGLFD 311
DMGFGLFD
Sbjct: 310 DMGFGLFD 317
>CE09655 [J] KOG0815 60S acidic ribosomal protein P0
Length = 312
Score = 266 bits (679), Expect = 4e-71
Identities = 139/304 (45%), Positives = 184/304 (59%), Gaps = 1/304 (0%)
Query: 8 KAEYFAKLREYLEEYKSVFVVGVDNVSSQQMHEVRKNLRGRAVVLMGKNTMVRRAVRGFI 67
KA YF KL E EEY +VGVDNV S+QM E+R+ +RG A +LMGKNTM+R+A+RG +
Sbjct: 10 KANYFTKLVELFEEYPKCLLVGVDNVGSKQMQEIRQAMRGHAEILMGKNTMIRKALRGHL 69
Query: 68 SDFPDYEKLLPFVKGNVGFIFTNDSLQDIKEVIIXXXXXXXXXXXXXXXEDIWVLAVNTG 127
P EKLLP + NVGF+FT + L +I+ ++ D+ + NTG
Sbjct: 70 GKNPSLEKLLPHIVENVGFVFTKEDLGEIRSKLLENRKGAPAKAGAIAPCDVKLPPQNTG 129
Query: 128 MEPGKTSFFQALGVPTKIARGTIEIVSDVKVVDAGKRVGASEASLLNLLNISPFTYGLTV 187
M P KTSFFQAL +PTKIARGTIEI++DV ++ G +VGASE++LLN+L ++PF+YGL V
Sbjct: 130 MGPEKTSFFQALQIPTKIARGTIEILNDVHLIKEGDKVGASESALLNMLGVTPFSYGLVV 189
Query: 188 VQVYDNGQVFPASILDITDDELISHFISAVNTIACVSLAAGYPTLPSVGHSLINNYKDLL 247
QVYD+G ++ +LD+T +EL F+S V +A VSLA YPTL SV HSL N +++L
Sbjct: 190 RQVYDDGTLYTPEVLDMTTEELRKRFLSGVRNVASVSLAVNYPTLASVAHSLANGLQNML 249
Query: 248 AVAIAADYIYPEIEELKDRIENPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGF 307
VA D + E E +K I +P DDDMGF
Sbjct: 250 GVAAVTDVSFKEAETIKAFIADP-SKFAAAAPAAAAAPAAAAPAAKKEEPKEESDDDMGF 308
Query: 308 GLFD 311
GLFD
Sbjct: 309 GLFD 312
>At3g11250 [J] KOG0815 60S acidic ribosomal protein P0
Length = 323
Score = 236 bits (602), Expect = 3e-62
Identities = 123/314 (39%), Positives = 180/314 (57%), Gaps = 8/314 (2%)
Query: 6 EKKAEYFAKLREYLEEYKSVFVVGVDNVSSQQMHEVRKNLRGRAVVLMGKNTMVRRAVRG 65
EKK Y KL + ++EY + VV DNV S Q+ +RK LRG +VVLMGKNTM++R+VR
Sbjct: 8 EKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRI 67
Query: 66 FISDFPDYE--KLLPFVKGNVGFIFTNDSLQDIKEVIIXXXXXXXXXXXXXXXEDIWVLA 123
+ + LLP ++GNVG IFT L+++ E + D+ V
Sbjct: 68 HSENSGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQP 127
Query: 124 VNTGMEPGKTSFFQALGVPTKIARGTIEIVSDVKVVDAGKRVGASEASLLNLLNISPFTY 183
NTG++P +TSFFQ L +PTKI +GT+EI++ V+++ G +VG+SEA+LL L I PF+Y
Sbjct: 128 GNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSY 187
Query: 184 GLTVVQVYDNGQVFPASILDITDDELISHFISAVNTIACVSLAAGYPTLPSVGHSLINNY 243
GL V VYDNG VF +LD+T+D+L+ F S ++ + ++LA YPTL + H IN Y
Sbjct: 188 GLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAY 247
Query: 244 KDLLAVAIAADYIYPEIEELKDRIENPDXXXXXXXXXXXXXXXXXXXXXXXX------XX 297
K+ LA+A+A DY +P+ E++K+ +++P
Sbjct: 248 KNALAIAVATDYTFPQAEKVKEFLKDPSKFVVAAAAVSADAGGGSAQAGAAAKVEEKKEE 307
Query: 298 XXXXDDDMGFGLFD 311
D + GFGLFD
Sbjct: 308 SDEEDYEGGFGLFD 321
>At3g09200 [J] KOG0815 60S acidic ribosomal protein P0
Length = 320
Score = 235 bits (600), Expect = 5e-62
Identities = 123/311 (39%), Positives = 181/311 (57%), Gaps = 5/311 (1%)
Query: 6 EKKAEYFAKLREYLEEYKSVFVVGVDNVSSQQMHEVRKNLRGRAVVLMGKNTMVRRAVRG 65
EKK Y KL + ++EY + VV DNV S Q+ +RK LRG +VVLMGKNTM++R+VR
Sbjct: 8 EKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRI 67
Query: 66 FISDFPDYE--KLLPFVKGNVGFIFTNDSLQDIKEVIIXXXXXXXXXXXXXXXEDIWVLA 123
+ + LLP ++GNVG IFT L+++ E + D+ V
Sbjct: 68 HSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQP 127
Query: 124 VNTGMEPGKTSFFQALGVPTKIARGTIEIVSDVKVVDAGKRVGASEASLLNLLNISPFTY 183
NTG++P +TSFFQ L +PTKI +GT+EI++ V+++ G +VG+SEA+LL L I PF+Y
Sbjct: 128 GNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSY 187
Query: 184 GLTVVQVYDNGQVFPASILDITDDELISHFISAVNTIACVSLAAGYPTLPSVGHSLINNY 243
GL V VYDNG VF +LD+T+D+L+ F S ++ + ++LA YPTL + H IN Y
Sbjct: 188 GLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAY 247
Query: 244 KDLLAVAIAADYIYPEIEELKDRIENPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD- 302
K+ LA+A+A +Y +P+ E++K+ +++P D
Sbjct: 248 KNALAIAVATEYTFPQAEKVKEYLKDPSKFAVASVAAVSADAGGGAPAAAKVEEKEESDE 307
Query: 303 DDMG--FGLFD 311
+D G FGLFD
Sbjct: 308 EDYGGDFGLFD 318
>At2g40010 [J] KOG0815 60S acidic ribosomal protein P0
Length = 317
Score = 233 bits (595), Expect = 2e-61
Identities = 123/308 (39%), Positives = 179/308 (57%), Gaps = 3/308 (0%)
Query: 6 EKKAEYFAKLREYLEEYKSVFVVGVDNVSSQQMHEVRKNLRGRAVVLMGKNTMVRRAVRG 65
EKK Y +KL + L EY + VV DNV S Q+ +RK LRG +VVLMGKNTM++R+VR
Sbjct: 9 EKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRI 68
Query: 66 FISDFPD--YEKLLPFVKGNVGFIFTNDSLQDIKEVIIXXXXXXXXXXXXXXXEDIWVLA 123
+ + LLP ++GNVG IFT L+++ E + D+ V
Sbjct: 69 HADKTGNQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQP 128
Query: 124 VNTGMEPGKTSFFQALGVPTKIARGTIEIVSDVKVVDAGKRVGASEASLLNLLNISPFTY 183
NTG++P +TSFFQ L +PTKI +GT+EI++ V+++ G +VG+SEA+LL L I PF+Y
Sbjct: 129 GNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSY 188
Query: 184 GLTVVQVYDNGQVFPASILDITDDELISHFISAVNTIACVSLAAGYPTLPSVGHSLINNY 243
GL V VYDNG VF +L++T+D+L+ F + V+ I +SLA YPT+ + H +N Y
Sbjct: 189 GLVVESVYDNGSVFNPEVLNLTEDDLVEKFAAGVSMITALSLAISYPTVAAAPHMFLNAY 248
Query: 244 KDLLAVAIAADYIYPEIEELKDRIENPDXXXXXXXX-XXXXXXXXXXXXXXXXXXXXXXD 302
K++LAVA+A +Y +P+ E +K+ +++P D
Sbjct: 249 KNVLAVALATEYSFPQAENVKEFLKDPTKFAVAVAAPVSGESGGAVVAVAVEEEAAEESD 308
Query: 303 DDMGFGLF 310
DMGF LF
Sbjct: 309 GDMGFDLF 316
>ECU07g0820 [J] KOG0815 60S acidic ribosomal protein P0
Length = 290
Score = 184 bits (467), Expect = 1e-46
Identities = 92/255 (36%), Positives = 157/255 (61%), Gaps = 2/255 (0%)
Query: 5 REKKAEYFAKLREYLEEYKSVFVVGVDNVSSQQMHEVRKNLRGRAVVLMGKNTMVRRAVR 64
+E+K + + R+ E Y +V ++NV S Q+ ++++ G A +LMGKN+ +RRA+
Sbjct: 31 KERKELTYERARKLFETYSRFALVKIENVVSTQLKDIKRQWGGNAELLMGKNSAIRRAIA 90
Query: 65 GFISDFPDYEKLLPFVKGNVGFIFTNDSLQDIKEVIIXXXXXXXXXXXXXXXEDIWVLAV 124
P+ + VKG+V F+F + +DIK+ I D+WV +
Sbjct: 91 DLGK--PELSGVYDLVKGDVCFVFFKGNARDIKKAIDENVREACAKVGNVAQRDVWVESC 148
Query: 125 NTGMEPGKTSFFQALGVPTKIARGTIEIVSDVKVVDAGKRVGASEASLLNLLNISPFTYG 184
TGM P KTS+FQALG+ TKI +G +EI+S KV+ G +VG S+A+LL +LNI PF Y
Sbjct: 149 ITGMTPDKTSYFQALGIATKITKGKVEIISPYKVLSEGDKVGPSQANLLGMLNIKPFCYK 208
Query: 185 LTVVQVYDNGQVFPASILDITDDELISHFISAVNTIACVSLAAGYPTLPSVGHSLINNYK 244
+T+ Q+Y++G ++ +S++DI ++++ + +A++T+A SL AG T S+ +++ N +K
Sbjct: 209 MTMHQIYEDGVIYDSSLIDIGEEDIFTSLRNAISTVAAASLGAGVITQASMPYNVRNAFK 268
Query: 245 DLLAVAIAADYIYPE 259
D+L V++ AD++ E
Sbjct: 269 DILHVSLGADFMIKE 283
>Hs20541776 [J] KOG0815 60S acidic ribosomal protein P0
Length = 234
Score = 169 bits (429), Expect = 4e-42
Identities = 83/180 (46%), Positives = 123/180 (68%)
Query: 45 LRGRAVVLMGKNTMVRRAVRGFISDFPDYEKLLPFVKGNVGFIFTNDSLQDIKEVIIXXX 104
+ G+AVV MG+N M+R+A +G + + P EKLLP ++GNVGF FT + L +++++++
Sbjct: 27 MEGKAVVPMGRNPMMRKATQGQLENSPALEKLLPPLQGNVGFAFTKEDLTEVRDLLLANK 86
Query: 105 XXXXXXXXXXXXEDIWVLAVNTGMEPGKTSFFQALGVPTKIARGTIEIVSDVKVVDAGKR 164
++ V A NTG+ P K SFFQALG+ TKI+RGT EI+SDV+++ G R
Sbjct: 87 VPAATRAGAIGPCEVTVPAQNTGLGPEKISFFQALGITTKISRGTTEILSDVQLIKTGDR 146
Query: 165 VGASEASLLNLLNISPFTYGLTVVQVYDNGQVFPASILDITDDELISHFISAVNTIACVS 224
VGASEA+LLN NISPF++GL + QV++NG ++ +LDIT++ L S F+ V +A VS
Sbjct: 147 VGASEATLLNTPNISPFSFGLVIQQVFNNGSIYNPEVLDITEETLYSGFLEGVRNVASVS 206
>Hs22061057 [J] KOG0815 60S acidic ribosomal protein P0
Length = 184
Score = 134 bits (338), Expect = 1e-31
Identities = 73/191 (38%), Positives = 110/191 (57%), Gaps = 36/191 (18%)
Query: 54 GKNTMVRRAVRGFISDFPDYEKLLPFVKGNVGFIFTNDSLQDIKEVIIXXXXXXXXXXXX 113
G+ TM+ +A++G + + EKLLP ++GNVGF+FT + L +I+++++
Sbjct: 30 GQETMMLKAIQGHLENSRALEKLLPRIQGNVGFVFTKEDLTEIRDMLVAS---------- 79
Query: 114 XXXEDIWVLAVNTGMEPGKTSFFQALGVPTKIARGTIEIVSDVKVVDAGKRVGASEASLL 173
K S + LG T EI+SDV+++ G +VGASEA+LL
Sbjct: 80 ------------------KASSLKPLG--------TTEILSDVQLIKTGVKVGASEATLL 113
Query: 174 NLLNISPFTYGLTVVQVYDNGQVFPASILDITDDELISHFISAVNTIACVSLAAGYPTLP 233
N+ NISPF++GL + QV+DNG ++ +LDIT++ L HF+ V IA V L GYP +
Sbjct: 114 NMRNISPFSFGLVIQQVFDNGSIYNTEVLDITEEILNPHFLEGVRNIANVCLQIGYPAVA 173
Query: 234 SVGHSLINNYK 244
SV HS I+ YK
Sbjct: 174 SVPHSTISGYK 184
>Hs17437153_1 [J] KOG0815 60S acidic ribosomal protein P0
Length = 334
Score = 115 bits (288), Expect = 8e-26
Identities = 72/207 (34%), Positives = 114/207 (54%), Gaps = 43/207 (20%)
Query: 8 KAEYFAKLREYLEEYKSVFVVGVDNVSSQQMHEVRKNLRGRAVVLMGKNTMVRRAVRGFI 67
K YF K+ + L++Y F++G DN+ S+QM ++R +L +A+VL+GKNT +
Sbjct: 138 KPNYFLKIIQLLDDYPKCFIMGADNMGSKQMQQIRISLCRKAMVLLGKNTTM-------- 189
Query: 68 SDFPDYEKLLPFVKGNVGFIFTNDSLQDIKEVIIXXXXXXXXXXXXXXXEDIWVLAVNTG 127
GNVGF+F + L +I+++++ + +A
Sbjct: 190 --------------GNVGFVFIKEDLTEIRDLLL--------------ANKVPAVAHAGS 221
Query: 128 MEPGKT---SFFQALGVPTKIARGTIEIVSDVKVVDAGKRVGASEASLLNLLNISPFTYG 184
+ P K+ S LG+ TKI+RG EI+SDV+++ G +VGASEA+ LLNISPF +G
Sbjct: 222 IAPVKSLCQSRTLVLGITTKISRGATEILSDVQLIKTGDKVGASEAT---LLNISPF-FG 277
Query: 185 LTVVQVYDNGQVFPASILDITDDELIS 211
L + QV+DNG ++ LDIT++ S
Sbjct: 278 LVIQQVFDNGSIYNPEGLDITEETAFS 304
>Hs22057309 [J] KOG0815 60S acidic ribosomal protein P0
Length = 214
Score = 112 bits (280), Expect = 7e-25
Identities = 64/197 (32%), Positives = 102/197 (51%), Gaps = 5/197 (2%)
Query: 118 DIWVLAVNTGMEPGKTSFFQALGVPTKIARGTIEIVSDVKVVDAGKRVGASEASLLNLLN 177
++ V A NTG+ P KTSFFQALG+ TKI+RGTIEI+SDV+++ G +VGA++A+LLN +
Sbjct: 20 EVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGANKATLLNTPS 79
Query: 178 ISPFTYGLTVVQVYDNGQVFPASILDITDDELISHFISAVNTIACVSLAAGYPTLPSVGH 237
ISP ++ L + Q DNG ++ +LDIT++ S + C L+A + +
Sbjct: 80 ISPSSFALVIQQASDNGSIYNPEVLDITEE--TSFLLPEGCPRCCQCLSADWLPTCCIST 137
Query: 238 SLINNYKDLLAVAIAADYIYPEIEELKDRIENPDXXXXXXXXXXXXXXXXXXXXXXXXXX 297
+ + + ++ DY +P ++K + +P
Sbjct: 138 PFYHQWVQMSPGSVETDYTFPLAGKVKAFLADPSAFVAIASVAVATTAAPAAAAPAKVEA 197
Query: 298 XXXXD---DDMGFGLFD 311
+ +DMGFGLFD
Sbjct: 198 KEEVEELGEDMGFGLFD 214
>Hs17443776 [J] KOG0815 60S acidic ribosomal protein P0
Length = 158
Score = 89.0 bits (219), Expect = 8e-18
Identities = 45/117 (38%), Positives = 70/117 (59%), Gaps = 7/117 (5%)
Query: 50 VVLMGKNTMVRRAVRGFISDFPDYEKLLPFVKGNVGFIFTNDSLQDIKEVIIXXXXXXXX 109
+V MGKNTM+ +A++G + + P EKLLP ++GNVGF FT + L +++++
Sbjct: 1 MVPMGKNTMMCKAIQGHLENNPALEKLLPHIQGNVGFAFTKEDLTKFRDMLLNSKVPAAT 60
Query: 110 XXXXXXXEDIWVLAVNTGMEPGKTSFFQALGVPTKIARGTIEIVSDVKVVDAGKRVG 166
++ V NTG+EP KTSFFQAL + T EI+SDV+++ G ++G
Sbjct: 61 HAGAIAPCEVTVPGQNTGLEPKKTSFFQALSI-------TTEILSDVQLIKTGDKIG 110
>Hs17437661 [J] KOG0815 60S acidic ribosomal protein P0
Length = 122
Score = 73.2 bits (178), Expect = 5e-13
Identities = 37/80 (46%), Positives = 59/80 (73%), Gaps = 1/80 (1%)
Query: 118 DIWVLAVNTGMEPGKTSFFQALGVPTKIARGTIEIVSDVKVVDAGKRVGASEASLLNLLN 177
++ V A NT + P K+ FFQALG+ TKI+R TI I+SDV+++ G ++ ASEA+LLN+LN
Sbjct: 40 EVTVPAQNTSLGPKKSFFFQALGITTKISRVTIGILSDVQLMRTGDKLEASEATLLNMLN 99
Query: 178 ISP-FTYGLTVVQVYDNGQV 196
+ F++GL + +V++N +
Sbjct: 100 TAQLFSFGLIIKRVFNNSSI 119
>Hs22060836 [J] KOG0815 60S acidic ribosomal protein P0
Length = 137
Score = 62.4 bits (150), Expect = 8e-10
Identities = 29/72 (40%), Positives = 50/72 (69%), Gaps = 2/72 (2%)
Query: 136 FQALGVPTKIARGTIEIVSDVKVVDAGKRVGASEASLLNLLNISPFTYGLTVVQVYDNGQ 195
F A G TK+ RG++EI+S+V ++ G + GASEA+L+N+ NISP ++ L + V+DN
Sbjct: 58 FSASG--TKMFRGSVEILSEVPLIKTGDKAGASEATLVNMWNISPSSFELIIQPVFDNCS 115
Query: 196 VFPASILDITDD 207
++ +LD+ ++
Sbjct: 116 IYNPEVLDMAEE 127
>Hs22060831 [J] KOG0815 60S acidic ribosomal protein P0
Length = 116
Score = 62.4 bits (150), Expect = 8e-10
Identities = 29/72 (40%), Positives = 50/72 (69%), Gaps = 2/72 (2%)
Query: 136 FQALGVPTKIARGTIEIVSDVKVVDAGKRVGASEASLLNLLNISPFTYGLTVVQVYDNGQ 195
F A G TK+ RG++EI+S+V ++ G + GASEA+L+N+ NISP ++ L + V+DN
Sbjct: 37 FSASG--TKMFRGSVEILSEVPLIKTGDKAGASEATLVNMWNISPSSFELIIQPVFDNCS 94
Query: 196 VFPASILDITDD 207
++ +LD+ ++
Sbjct: 95 IYNPEVLDMAEE 106
>7303797 [A] KOG0816 Protein involved in mRNA turnover
Length = 256
Score = 61.6 bits (148), Expect = 1e-09
Identities = 47/201 (23%), Positives = 93/201 (45%), Gaps = 11/201 (5%)
Query: 15 LREYLEEYKSVFVVGVDNVSSQQMHEVRKNLRGRAVVLMGKNTMVRRAVRGFISDF--PD 72
+R + +Y ++FV V N+ + + ++R+ L+ + + GKN +++ + S+ P+
Sbjct: 30 IRFCVGKYPNIFVFQVQNMRNSLLKDLRQELKKNSRFIFGKNRVMQIGLGRTKSEEVEPE 89
Query: 73 YEKLLPFVKGNVGFIFTNDSLQDIKEVIIXXXXXXXXXXXXXXXEDIWVLA-----VNTG 127
KL + G VG +FT+ S +++ E E + + A
Sbjct: 90 LHKLSKRLTGQVGLLFTDKSKEEVLEWAENYWAVEYARSGFVATETVTLPAGPLEDFAHS 149
Query: 128 MEPGKTSFFQALGVPTKIARGTIEIVSDVKVVDAGKRVGASEASLLNLLNISPFTYGLTV 187
MEP ++LG+PTK+ +G + + SD V + GK + +A +L L+ + LT+
Sbjct: 150 MEP----HLRSLGLPTKLEKGIVTLYSDYTVCEEGKVLTPEQARILKLVGKPMAKFRLTM 205
Query: 188 VQVYDNGQVFPASILDITDDE 208
+ + F + D +DE
Sbjct: 206 KCSWTKSEGFQLHVEDDVNDE 226
>At1g25260 [A] KOG0816 Protein involved in mRNA turnover
Length = 231
Score = 59.3 bits (142), Expect = 7e-09
Identities = 44/187 (23%), Positives = 85/187 (44%), Gaps = 7/187 (3%)
Query: 5 REKKAEYFAKLREYLEEYKSVFVVGVDNVSSQQMHEVRKNLRGRAVVLMGKNTMVRRAVR 64
RE K +RE +E+Y SV+V +N+ + + E R+ R +G N +++ A+
Sbjct: 20 REHKECIVNGIREAVEKYSSVYVFSFENMRNIKFKEFRQQFRHNGKFFLGSNKVMQVALG 79
Query: 65 GFISDF--PDYEKLLPFVKGNVGFIFTNDSLQDIKEVIIXXXXXXXXXXXXXXXEDIWVL 122
D K+ ++G+ G + T+ ++++ + E L
Sbjct: 80 RSAEDELRSGIYKVSKLLRGDTGLLVTDMPKEEVESLFNAYEDSDFSRTGSIAVETEGPL 139
Query: 123 AVNTG-MEPGKTSFFQALGVPTKIARGTIEIVSDVKVVDAGKRVGASEASLLNLLNISPF 181
T MEP + L +P ++ +GT+E+V+D V + GK++ A +L LL +
Sbjct: 140 EQFTHEMEP----LLRKLEMPVRLNKGTVELVADFVVCEEGKQLSPKSAHILRLLRMKMA 195
Query: 182 TYGLTVV 188
T+ L ++
Sbjct: 196 TFKLNLL 202
>Hs18490987 [A] KOG0816 Protein involved in mRNA turnover
Length = 239
Score = 56.6 bits (135), Expect = 4e-08
Identities = 46/200 (23%), Positives = 89/200 (44%), Gaps = 22/200 (11%)
Query: 6 EKKAEYFAKLREYLEEYKSVFVVGVDNVSSQQMHEVRKNLRGRAVVLMGKNTMVRRAVRG 65
E K +LR+ ++ YK +F+ V N+ + ++ ++R N + + GKN ++ A+
Sbjct: 21 ELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIR-NAWKHSRMFFGKNKVMMVALGR 79
Query: 66 FISDFPDYEKLLPFV----KGNVGFIFTNDSLQDIKEVIIXXXXXXXXXXXXXXXEDIWV 121
SD +Y+ L V +G VG +FTN + +++ E
Sbjct: 80 SPSD--EYKDNLHQVSKRLRGEVGLLFTNRTKEEVNEWFTKYTEMDYARAGNKA------ 131
Query: 122 LAVNTGMEPGKTSFF--------QALGVPTKIARGTIEIVSDVKVVDAGKRVGASEASLL 173
A ++PG F + LG+PT + RG + ++SD +V G + +A +L
Sbjct: 132 -AFTVSLDPGPLEQFPHSMEPQLRQLGLPTALKRGVVTLLSDYEVCKEGDVLTPEQARVL 190
Query: 174 NLLNISPFTYGLTVVQVYDN 193
L + +T+ ++D+
Sbjct: 191 KLFGYEMAEFKVTIKYMWDS 210
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.320 0.139 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,212,664
Number of Sequences: 60738
Number of extensions: 542895
Number of successful extensions: 1377
Number of sequences better than 1.0e-05: 21
Number of HSP's better than 0.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1332
Number of HSP's gapped (non-prelim): 25
length of query: 311
length of database: 30,389,216
effective HSP length: 106
effective length of query: 205
effective length of database: 23,950,988
effective search space: 4909952540
effective search space used: 4909952540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)