ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactII1505   suspect: HSP  Z     KOG4462  Cytoskeleton                                                   WASP-interacting protein VRP1/WIP, contains WH2 domain

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactII1505 538539  540305 589  
         (589 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YLR337c [Z] KOG4462 WASP-interacting protein VRP1/WIP contains W...   100   6e-21
SPBC13E7.09 [Z] KOG4462 WASP-interacting protein VRP1/WIP contai...    70   1e-11
CE25091 [Z] KOG4462 WASP-interacting protein VRP1/WIP contains W...    56   1e-07

>YLR337c [Z] KOG4462 WASP-interacting protein VRP1/WIP contains WH2 domain
          Length = 817

 Score =  100 bits (249), Expect = 6e-21
 Identities = 52/104 (50%), Positives = 67/104 (64%), Gaps = 3/104 (2%)

Query: 486 TNSSSSKGFFKHRLFSSGNEASRPSQSTNPYTNAAEIDVGDFTIEGSQDTTGIKLNNSGI 545
           T++S SK   K RLFS+G    +   +T  +TN  ++DVG +TI GS    G K  N  I
Sbjct: 717 TSNSPSKNL-KQRLFSTGGSTLQHKHNT--HTNQPDVDVGRYTIGGSNSIVGAKSGNERI 773

Query: 546 TIDDSKFDWSNRNDLPKPRQFLGLRKLYPSGRGSSVPLDFTVFT 589
            IDDS+F W+N + +PKPR F    KLYPSG+GSSVPLD T+FT
Sbjct: 774 VIDDSRFKWTNVSQMPKPRPFQNKTKLYPSGKGSSVPLDLTLFT 817



 Score = 85.5 bits (210), Expect = 2e-16
 Identities = 50/108 (46%), Positives = 60/108 (55%), Gaps = 5/108 (4%)

Query: 38  RDALLSDIRKGAKLKKAHTVDKSAPAIGGXXXXXXXXXXXXXXXXXXXXXXXTPTQLPGV 97
           RDALL DIRKG KLKKA T D+SAP +GG                        P    G 
Sbjct: 31  RDALLGDIRKGMKLKKAETNDRSAPIVGGGVVSSASGSSGTVSSKGPSMSA-PPIPGMGA 89

Query: 98  PQLGDILAGGIPKLKHVSGSSKSPAIPS-GAPPLP---DSSSIPKIPS 141
           PQLGDILAGGIPKLKH++ ++ +   PS  APP+P    S + P IP+
Sbjct: 90  PQLGDILAGGIPKLKHINNNASTKPSPSASAPPIPGAVPSVAAPPIPN 137


>SPBC13E7.09 [Z] KOG4462 WASP-interacting protein VRP1/WIP contains WH2 domain
          Length = 309

 Score = 69.7 bits (169), Expect = 1e-11
 Identities = 45/121 (37%), Positives = 57/121 (46%), Gaps = 14/121 (11%)

Query: 38  RDALLSDIRKGAKLKKAHTVDKSAPAIGGXXXXXXXXXXXXXXXX-----------XXXX 86
           R ALL+ I+KG KLKKA T D+SAP +GG                               
Sbjct: 28  RSALLNSIQKGKKLKKATTNDRSAPVVGGGVVGERKSNTPKSFAAPPVPTGAPSLPTSSN 87

Query: 87  XXXTPTQLPGVPQLGDILAGGIPKLKHVSGSSKSPAIPSG-APPLPDSSSIPKIPSNRPQ 145
                 + P +P LG + AGG+PKL+H+  SS S A PS  APP P S   P  P++ P 
Sbjct: 88  NTQQAEERPSMPALGGLFAGGMPKLRHIGKSSASAAPPSAPAPPTPQSELRP--PTSAPP 145

Query: 146 R 146
           R
Sbjct: 146 R 146


>CE25091 [Z] KOG4462 WASP-interacting protein VRP1/WIP contains WH2 domain
          Length = 376

 Score = 56.2 bits (134), Expect = 1e-07
 Identities = 36/113 (31%), Positives = 51/113 (44%), Gaps = 10/113 (8%)

Query: 38  RDALLSDIRKGAKLKKAHTVDKSAPAIGGXXXXXXXXXXXXXXXXXXXXXXXTPTQLPGV 97
           R+ALL DI KG KLKK  T D+SAP++G                         P Q+ G 
Sbjct: 29  RNALLGDIHKGLKLKKTVTNDRSAPSVG--KVVGSSGSSSNGNSGNGNGPAAKPPQMSG- 85

Query: 98  PQLGDILAGGIP------KLKHVSGSSKSPAIPSGAPPLPDSSSIPKIPSNRP 144
             LG + A G+P      K++  + S   P   S APP+P  + +P +   +P
Sbjct: 86  -GLGGLFANGMPMKPSENKIRRATTSIGPPPTASSAPPVPPPAPVPAVEGKKP 137


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.309    0.130    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,343,928
Number of Sequences: 60738
Number of extensions: 703459
Number of successful extensions: 2197
Number of sequences better than 1.0e-05: 3
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2168
Number of HSP's gapped (non-prelim): 23
length of query: 589
length of database: 30,389,216
effective HSP length: 112
effective length of query: 477
effective length of database: 23,586,560
effective search space: 11250789120
effective search space used: 11250789120
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)