ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII1528 suspect: HSP U KOG0864 Intracellular trafficking, secretion, and vesicular transport Ran-binding protein RANBP1 and related RanBD domain proteins
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII1528 548259 546277 -661
(661 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YLR335w_2 [U] KOG0864 Ran-binding protein RANBP1 and related Ran... 151 3e-36
YLR335w_1 [YU] KOG4719 Nuclear pore complex protein 142 1e-33
YJL041w_1 [YU] KOG4719 Nuclear pore complex protein 102 1e-21
SPCC18B5.07c [U] KOG0866 Ran-binding protein RANBP3 87 8e-17
YOR098c [YU] KOG4719 Nuclear pore complex protein 72 4e-12
YIL063c [U] KOG0864 Ran-binding protein RANBP1 and related RanBD... 67 9e-11
CE17939 [U] KOG0864 Ran-binding protein RANBP1 and related RanBD... 64 1e-09
7304093 [U] KOG2724 Nuclear pore complex component NPAP60L/NUP50 62 2e-09
At3g15970 [U] KOG0864 Ran-binding protein RANBP1 and related Ran... 55 3e-07
7301301 [U] KOG0864 Ran-binding protein RANBP1 and related RanBD... 53 1e-06
YDR002w [U] KOG0864 Ran-binding protein RANBP1 and related RanBD... 52 2e-06
Hs4826872 [YU] KOG4719 Nuclear pore complex protein 52 2e-06
>YLR335w_2 [U] KOG0864 Ran-binding protein RANBP1 and related RanBD domain
proteins
Length = 164
Score = 151 bits (381), Expect = 3e-36
Identities = 74/152 (48%), Positives = 103/152 (67%), Gaps = 1/152 (0%)
Query: 511 SDKDTAKEVSEKNSEDAS-AEAQEEPSKTXXXXXXXXXXXXXFSQRAKLMIFNTETKAYD 569
S +++ E + S+DA+ +A E SK FSQ+AKLM FN ETK+YD
Sbjct: 12 SKEESTTEATGNESQDATKVDATPEESKPINLQNGEEDEVALFSQKAKLMTFNAETKSYD 71
Query: 570 SRGVGELKVLQNKEDNTKARILCRSDGMGHILLNTSIIKSFSYEALDPNNENLVKCPAIK 629
SRGVGE+K+L+ K+D +K R+LCRSDGMG++LLN +++ SF YE L P N+NL+K P +
Sbjct: 72 SRGVGEMKLLKKKDDPSKVRLLCRSDGMGNVLLNATVVDSFKYEPLAPGNDNLIKAPTVA 131
Query: 630 AEGGLDTYVVKVKQKADGRKLVQAIKDAQSPM 661
A+G L TY+VK KQK +GR +AI+DA+ M
Sbjct: 132 ADGKLVTYIVKFKQKEEGRSFTKAIEDAKKEM 163
>YLR335w_1 [YU] KOG4719 Nuclear pore complex protein
Length = 556
Score = 142 bits (359), Expect = 1e-33
Identities = 156/564 (27%), Positives = 217/564 (37%), Gaps = 137/564 (24%)
Query: 1 MSKRFAGSQMTREGLENGHSNNVSDDETPFDKPAVASESVMSTRKIAMPKRKMG----GF 56
M+KR A +Q+ RE + SN DD TP K VAS +VM+ RKIAMPKR+M G
Sbjct: 1 MAKRVADAQIQRETYD---SNESDDDVTPSTK--VASSAVMNRRKIAMPKRRMAFKPFGS 55
Query: 57 TAGDKPNMFKVIKDDKKPQGT-----------DLNEKLTALNVQFKNKINSTLESDPVAD 105
D+ + GT + N +L ALN+QFK K++ + P+AD
Sbjct: 56 AKSDETKQASSFSFLNRADGTGEAQVDNSPTTESNSRLKALNLQFKAKVDDLVLGKPLAD 115
Query: 106 ISFLFDKYKTYSQQLRSEAKTNGAANAPPXXXXXXXXXXANVEXXXXXXXXXXXXXXXXX 165
+ LF +Y+ Y + + EA N P A VE
Sbjct: 116 LRPLFTRYELYIKNIL-EAPVKSIEN--PTQTKGNDAKPAKVEDVQ-------------- 158
Query: 166 XXXXXXXXXXXXXXXXRLQDKKEQIEINXXXXXXXXKPAVNVEGPKFVLAKKPTTSDPPF 225
+ D + E V VEGPKF + KP SD F
Sbjct: 159 ----------------KSSDSSSEDE-------------VKVEGPKFTIDAKPPISDSVF 189
Query: 226 SFGGNK--RKEPDSDSDSEIEIKGPQFTFNGTVSSSAFTLPKNDASRTEESEPAEKPTDN 283
SFG K RK+ +SDS+++IEIKGP+F F+GTVSS F L + +++E KP
Sbjct: 190 SFGPKKENRKKDESDSENDIEIKGPEFKFSGTVSSDVFKLNPSTDKNEKKTETNAKPFSF 249
Query: 284 KPASIFGNSSQSKPTFPPSASAPSIEKNEGSKPALPAFGSNKADNGXXXXXXXXXXXXXK 343
A+ + Q+K P S + + + + A +F
Sbjct: 250 SSAT--STTEQTKSKNPLSLTEATKTNVDNNSKAEASF---------------------- 285
Query: 344 DLXXXXXXXXXXXXXXSTFGTXXXXXXXXXXXXXXXXXXXVQRTATENKDSSKPSFTFGA 403
TFGT V A K SFTFG+
Sbjct: 286 -----------------TFGTKHAADSQNNKPSF------VFGQAAAKPSLEKSSFTFGS 322
Query: 404 MGKENSNDEAKKPSFTFGTSTTSEKPAESS-----KPSFTFGKASTGSTP------FTFG 452
E NDE ST++ KP +SS PSF+F S +TP F+FG
Sbjct: 323 TTIEKKNDE---------NSTSNSKPEKSSDSNDSNPSFSFSIPSK-NTPDASKPSFSFG 372
Query: 453 KQETDKKDEKKPTFTFGATAASTVPAFSFGANKSEEAPPQGESSGFKISLPFASSAPTSD 512
+ K + KP F+FGA S A N + E P + IS S
Sbjct: 373 VPNSSKNETSKPVFSFGAATPSAKEASQEDDNNNVEKPSSKPAFNL-ISNAGTEKEKESK 431
Query: 513 KDTAKEVSEKNSEDASAEAQEEPS 536
KD+ S S + ++ ++PS
Sbjct: 432 KDSKPAFSFGISNGSESKDSDKPS 455
>YJL041w_1 [YU] KOG4719 Nuclear pore complex protein
Length = 590
Score = 102 bits (255), Expect = 1e-21
Identities = 92/334 (27%), Positives = 136/334 (40%), Gaps = 43/334 (12%)
Query: 223 PPFSFGGNKRKEPDSDSDSEIEIKGPQFTFNGTVSSSAFTLPKNDASRTEESEPAEKPTD 282
P FSFG ++ D + E P F+FN +V + K +
Sbjct: 177 PAFSFGAT------TNDDKKTEPDKPAFSFNSSVGNKTDAQAPTTGFSFGSQLGGNKTVN 230
Query: 283 N--KPASIFGNSSQSKPTFPPSASAPSIEKNEGSKPALPAFGSNKADNGXXXXXXXXXXX 340
KP+ FG+ S P AS P NE +KPAL +FG+ +DN
Sbjct: 231 EAAKPSLSFGSGSAGAN--PAGASQPEPTTNEPAKPAL-SFGTATSDNKTTNTTPSFSFG 287
Query: 341 XXKDLXXXXXXXXXXXXXXSTFGTXXXXXXXXXXXXXXXXXXXVQRTATENKD-SSKPSF 399
D F ++ + +D ++KP+F
Sbjct: 288 AKSD------ENKAGATSKPAFSFGAKPEEKKDDNSSKPAFSFGAKSNEDKQDGTAKPAF 341
Query: 400 TFGAMGKENSNDEAKKPSFTFGTSTTSEKPAESSKPSFTFG------KASTGSTP-FTFG 452
+FGA E +N+E KP+F+FG + +K ++SKP+F+FG KAS S P F+FG
Sbjct: 342 SFGAKPAEKNNNETSKPAFSFGAKSDEKKDGDASKPAFSFGAKPDENKASATSKPAFSFG 401
Query: 453 KQETDKKDE--KKPTFTFGATA------ASTVPAFSFGANKSEEAPPQGESSGFKISLPF 504
+ +KKD+ KP F+FGA + + PAFSFGA +E+ + F
Sbjct: 402 AKPEEKKDDNSSKPAFSFGAKSNEDKQDGTAKPAFSFGAKPAEKNNNETSKPAFSFG--- 458
Query: 505 ASSAPTSDKDTAK-------EVSEKNSEDASAEA 531
A S D D +K + EK D+S A
Sbjct: 459 AKSDEKKDGDASKPAFSFGAKSDEKKDSDSSKPA 492
Score = 96.3 bits (238), Expect = 1e-19
Identities = 91/338 (26%), Positives = 133/338 (38%), Gaps = 66/338 (19%)
Query: 216 KKPTTSDPPFSFGGNKRKEPDSDSDSEIEIKGPQFTFNGTVSSSAFTLPKNDASRTEESE 275
K TS P FSFG ++ D +S P F+F + K D +
Sbjct: 294 KAGATSKPAFSFGAKPEEKKDDNSSK------PAFSFGAKSNED-----KQDGTAKPAFS 342
Query: 276 PAEKPTDNKPASIFGNSSQSKPTFPPSASAPSIEKNEGSKPALPAFGSNKADNGXXXXXX 335
KP + N+ SKP F A + + + SKPA +FG+ +N
Sbjct: 343 FGAKPAEKN------NNETSKPAFSFGAKSDEKKDGDASKPAF-SFGAKPDENKASATSK 395
Query: 336 XXXXXXXKDLXXXXXXXXXXXXXXSTFGTXXXXXXXXXXXXXXXXXXXVQRTATENKDSS 395
K +FG + + ++
Sbjct: 396 PAFSFGAKP---EEKKDDNSSKPAFSFGA--------------------KSNEDKQDGTA 432
Query: 396 KPSFTFGAMGKENSNDEAKKPSFTFGTSTTSEKPAESSKPSFTFG------KASTGSTP- 448
KP+F+FGA E +N+E KP+F+FG + +K ++SKP+F+FG K S S P
Sbjct: 433 KPAFSFGAKPAEKNNNETSKPAFSFGAKSDEKKDGDASKPAFSFGAKSDEKKDSDSSKPA 492
Query: 449 FTFGKQETDKKD--EKKPTFTFGATAAS------TVPAFSFGANKSEEAPPQGESSGFKI 500
F+FG + +KKD KP F+FGA + PAFSFGA +E+ ES K
Sbjct: 493 FSFGTKSNEKKDSGSSKPAFSFGAKPDEKKNDEVSKPAFSFGAKANEKK----ESDESKS 548
Query: 501 SLPFASSAPTSDKDTAKEVSEKNSEDASAEAQEEPSKT 538
+ F S K T KE + S A+ E K+
Sbjct: 549 AFSFGS------KPTGKEEGDGAKAAISFGAKPEEQKS 580
Score = 89.0 bits (219), Expect = 2e-17
Identities = 84/291 (28%), Positives = 111/291 (37%), Gaps = 71/291 (24%)
Query: 210 PKFVLAKKPT------TSDPPFSFGGNKRKEPDSDSDSEIEIKGPQFTFNGTVSSSAFTL 263
P F KP TS P FSFG ++ D D+ P F+F
Sbjct: 339 PAFSFGAKPAEKNNNETSKPAFSFGAKSDEKKDGDASK------PAFSFGAKPD------ 386
Query: 264 PKNDASRTEE------SEPAEKPTDN--KPASIFGNSSQ-------SKPTFPPSASAPSI 308
+N AS T + ++P EK DN KPA FG S +KP F A
Sbjct: 387 -ENKASATSKPAFSFGAKPEEKKDDNSSKPAFSFGAKSNEDKQDGTAKPAFSFGAKPAEK 445
Query: 309 EKNEGSKPALPAFGSNKADNGXXXXXXXXXXXXXKDLXXXXXXXXXXXXXXSTFGTXXXX 368
NE SKPA +FG+ + K +FGT
Sbjct: 446 NNNETSKPAF-SFGAKSDEKKDGDASKPAFSFGAKS---DEKKDSDSSKPAFSFGTK--- 498
Query: 369 XXXXXXXXXXXXXXXVQRTATENKDS--SKPSFTFGAMGKENSNDEAKKPSFTFGTSTTS 426
+ E KDS SKP+F+FGA E NDE KP+F+FG
Sbjct: 499 -------------------SNEKKDSGSSKPAFSFGAKPDEKKNDEVSKPAFSFGAKANE 539
Query: 427 EKPAESSKPSFTFGKASTG-------STPFTFGKQETDKK--DEKKPTFTF 468
+K ++ SK +F+FG TG +FG + ++K D KP FTF
Sbjct: 540 KKESDESKSAFSFGSKPTGKEEGDGAKAAISFGAKPEEQKSSDTSKPAFTF 590
Score = 67.0 bits (162), Expect = 9e-11
Identities = 71/339 (20%), Positives = 110/339 (31%), Gaps = 43/339 (12%)
Query: 218 PTTSDPPFSFG-----GNKRKEPDSDSDSEIEIKGPQFTFNGTVSSSAFTLPKNDASRTE 272
P + PFSFG N + S F FN + P N +
Sbjct: 6 PQQNKTPFSFGTANNNSNTTNQNSSTGAGAFGTGQSTFGFNNSA-------PNNTNNANS 58
Query: 273 ESEPAEKPTDNKPASIFGNSSQSKPTFPPSASAPSIEKNEGSKPALPAFGSNKADNGXXX 332
PA ++N + FGNS+ + F + S + + + +L FGS+ A
Sbjct: 59 SITPAFG-SNNTGNTAFGNSNPTSNVFGSNNSTTNTFGSNSAGTSL--FGSSSAQQTKSN 115
Query: 333 XXXXXXXXXXKDLXXXXXXXXXXXXXXSTFGTXXXXXXXXXXXXXXXXXXXVQRTATENK 392
L FG
Sbjct: 116 GTAGGNTFGSSSLFNNSTNSNTTK---PAFGGLNFGGGNNTTPSSTGNANTSNNLFGATA 172
Query: 393 DSSKPSFTFGAMGKENSNDEAKKPSFTF----GTSTTSEKPA----------------ES 432
+++KP+F+FGA ++ E KP+F+F G T ++ P E+
Sbjct: 173 NANKPAFSFGATTNDDKKTEPDKPAFSFNSSVGNKTDAQAPTTGFSFGSQLGGNKTVNEA 232
Query: 433 SKPSFTFGKASTGSTPFTFGKQETDKKDEKKPTFTFGATAA-----STVPAFSFGANKSE 487
+KPS +FG S G+ P + E + KP +FG + +T P+FSFGA E
Sbjct: 233 AKPSLSFGSGSAGANPAGASQPEPTTNEPAKPALSFGTATSDNKTTNTTPSFSFGAKSDE 292
Query: 488 EAPPQGESSGFKISLPFASSAPTSDKDTAKEVSEKNSED 526
F + A K++ED
Sbjct: 293 NKAGATSKPAFSFGAKPEEKKDDNSSKPAFSFGAKSNED 331
>SPCC18B5.07c [U] KOG0866 Ran-binding protein RANBP3
Length = 565
Score = 87.0 bits (214), Expect = 8e-17
Identities = 97/431 (22%), Positives = 159/431 (36%), Gaps = 53/431 (12%)
Query: 249 QFTFNGTVSSSAFTLPKNDASRTEESEPAEKPTDNKPASIFGNSSQSKPTFPPSASAPSI 308
Q T N VS P+ S+ S EKP ++ + KP PP A
Sbjct: 157 QPTSNAVVSE---VNPQQQKSQDSSSFVTEKPASSE------KEDKEKPLVPPGAPRFGF 207
Query: 309 EKNEGSKPALPAFGSNKADNGXXXXXXXXXXXXXKDLXXXXXXXXXXXXXXSTFGTXXXX 368
+ PA GS+ N K + GT
Sbjct: 208 --------SAPALGSSFQFNSSAFTPKGSFGE--KSATEAEAKEKETSSNQTATGTAATT 257
Query: 369 XXXXXXXXXXXXXXXVQRTATENKDSSKPSFTFGA-MGKENSNDEAKKPSFTFGTSTTSE 427
++ E+K + P F+F M +++ E K+ T + +
Sbjct: 258 TNQFSFNTAANPFAFAKKENEESKPLT-PVFSFSTTMASADASKETKQTHETKDSKSEES 316
Query: 428 KPAESSKPSFTFGKASTGSTPFTFGKQETDKKDEKKPTFTF-GATAASTVPAFSFGANKS 486
KP+ + K A + F++ + K D + FTF ++ +PA S
Sbjct: 317 KPSNNEKSENAVEPAKGNTMSFSWTPDKPIKFDTPEKKFTFTNPLSSKKLPA------SS 370
Query: 487 EEAPPQGESSGFKISL---PFASSAPTSDKDTAK-------EVSEKNS----------ED 526
+ PP + GF PF+ +AP S T+ E SE+ S E+
Sbjct: 371 DVKPPSAAAVGFSFGTTTNPFSFAAPKSSFPTSSTPASVGAEKSEETSNGNKSEQEEKEN 430
Query: 527 ASAEAQEEPSKTXXXXXXXXXXXXXFSQRAKLMIFNTETKAYDSRGVGELKVLQNKEDNT 586
+ E + S F RAK+ F+ +K+Y G+G LK+ ++ D
Sbjct: 431 GNDETRSNDSLVSGKGKGEENEDSVFETRAKIYRFDATSKSYSDIGIGPLKINVDR-DTG 489
Query: 587 KARILCRSDGMGHILLNTSIIKSFSYEALDPNNENLVKCPAIKAEG-GLDTYVVKVKQKA 645
ARIL R +G G +LLN + + F Y + VK PA +G ++ Y+++VK+ +
Sbjct: 490 SARILARVEGSGKLLLNVRLCQDFEYSLAGKKD---VKVPAASTDGKSIEMYLIRVKEPS 546
Query: 646 DGRKLVQAIKD 656
KL+ + +
Sbjct: 547 TAEKLLAELNE 557
>YOR098c [YU] KOG4719 Nuclear pore complex protein
Length = 1076
Score = 71.6 bits (174), Expect = 4e-12
Identities = 88/365 (24%), Positives = 137/365 (37%), Gaps = 70/365 (19%)
Query: 218 PTTSDPPFSFGGNKRKEPDSDSDSEIEIKGPQFTFNGTVSSSAFTLPKNDASRTEESEPA 277
P ++ P FSFG + + D ++E + K T + F K + + +
Sbjct: 441 PKSTAPIFSFGKQEENGDEGDDENEPKRKRRLPVSEDTNTKPLFDFGKTGDQKETKKGES 500
Query: 278 EKPTDNKPASIFGNS-----------------------SQSKPTFPPSASAPSIEKNEGS 314
EK KP+ +FG S S ++ TF +A+A
Sbjct: 501 EKDASGKPSFVFGASDKQAEGTPLFTFGKKADVTSNIDSSAQFTFGKAATAKETHTKPSE 560
Query: 315 KPALPA------FGSNKADNGXXXXXXXXXXXXXKDLXXXXXXXXXXXXXXSTFGTXXXX 368
PA FG + ++N K +F
Sbjct: 561 TPATIVKKPTFTFGQSTSENKISEGSAKPTFSFSKSEEERKSSPISNEAAKPSFS----- 615
Query: 369 XXXXXXXXXXXXXXXVQRTATENKDSSKPSFTFGAMGKENSN--DEAKKPSFTFGTSTTS 426
V A + + KP+F+F +++S+ E KKPSFTF +S TS
Sbjct: 616 ----------FPGKPVDVQAPTDDKTLKPTFSFTEPAQKDSSVVSEPKKPSFTFASSKTS 665
Query: 427 EKPAESSKPSFTFGKASTGSTP------FTFGK---QETDKKDEKKPTFTFG------AT 471
+ KP F+FGK+ P F+F K ETDK+ P+FTFG T
Sbjct: 666 Q-----PKPLFSFGKSDAAKEPPGSNTSFSFTKPPANETDKR-PTPPSFTFGGSTTNNTT 719
Query: 472 AASTVPAFSFGANKSEEAPPQGESSGF-KISLPFASSAPTSDKDTAKEVSEKNSEDASAE 530
ST P+FSFGA +S ++ ++ K+S F+ + +K+ K S + D SA
Sbjct: 720 TTSTKPSFSFGAPESMKSTASTAAANTEKLSNGFSFTKFNHNKE--KSNSPTSFFDGSAS 777
Query: 531 AQEEP 535
+ P
Sbjct: 778 STPIP 782
Score = 67.0 bits (162), Expect = 9e-11
Identities = 60/189 (31%), Positives = 77/189 (39%), Gaps = 40/189 (21%)
Query: 385 QRTATENKDSSKPSFTFGAMGK-------ENSNDEAKKPSFTFGTSTTSEKPAESSKPSF 437
+R ++KP F FG G E+ D + KPSF FG S+K AE + P F
Sbjct: 470 RRLPVSEDTNTKPLFDFGKTGDQKETKKGESEKDASGKPSFVFG---ASDKQAEGT-PLF 525
Query: 438 TFGKAS------TGSTPFTFGKQETDKKDE-----------KKPTFTFGATAA------- 473
TFGK + S FTFGK T K+ KKPTFTFG + +
Sbjct: 526 TFGKKADVTSNIDSSAQFTFGKAATAKETHTKPSETPATIVKKPTFTFGQSTSENKISEG 585
Query: 474 STVPAFSFGANKSE--EAPPQGESSGFKISL---PFASSAPTSDKDTAKEVSEKNSEDAS 528
S P FSF ++ E +P E++ S P APT DK S
Sbjct: 586 SAKPTFSFSKSEEERKSSPISNEAAKPSFSFPGKPVDVQAPTDDKTLKPTFSFTEPAQKD 645
Query: 529 AEAQEEPSK 537
+ EP K
Sbjct: 646 SSVVSEPKK 654
Score = 65.9 bits (159), Expect = 2e-10
Identities = 85/366 (23%), Positives = 123/366 (33%), Gaps = 74/366 (20%)
Query: 219 TTSDPPFSFGGNKRKEPDSDSDSEIEIKG----------------PQFTFNGTV------ 256
T + P F FG ++ +SE + G P FTF
Sbjct: 478 TNTKPLFDFGKTGDQKETKKGESEKDASGKPSFVFGASDKQAEGTPLFTFGKKADVTSNI 537
Query: 257 -SSSAFTLPKNDASRTEESEPAEKPTD--NKPASIFGNSSQ--------SKPTFPPSASA 305
SS+ FT K ++ ++P+E P KP FG S+ +KPTF S S
Sbjct: 538 DSSAQFTFGKAATAKETHTKPSETPATIVKKPTFTFGQSTSENKISEGSAKPTFSFSKSE 597
Query: 306 PSIEK----NEGSKPALPAFGSNKADNGXXXXXXXXXXXXXKDLXXXXXXXXXXXXXXST 361
+ NE +KP+ +F D K S
Sbjct: 598 EERKSSPISNEAAKPSF-SFPGKPVD-----VQAPTDDKTLKPTFSFTEPAQKDSSVVSE 651
Query: 362 FGTXXXXXXXXXXXXXXXXXXXVQRTATENKDSSKPSFTFGAMGKENSNDEAKKPSFTFG 421
+ A + S SF+F ++ PSFTFG
Sbjct: 652 PKKPSFTFASSKTSQPKPLFSFGKSDAAKEPPGSNTSFSFTKPPANETDKRPTPPSFTFG 711
Query: 422 TSTTSEKPAESSKPSFTFG----KASTGSTP----------FTFGKQETDKKDEKKPTFT 467
STT+ S+KPSF+FG ST ST F+F K +K+ PT
Sbjct: 712 GSTTNNTTTTSTKPSFSFGAPESMKSTASTAAANTEKLSNGFSFTKFNHNKEKSNSPTSF 771
Query: 468 FGATAAST-VP----------------AFSFGANKSEEAPPQGESSGFKISLPFASSAPT 510
F +A+ST +P AFSFG + S+ F + P + T
Sbjct: 772 FDGSASSTPIPVLGKPTDATGNTTSKSAFSFGTANTNGTNASANSTSFSFNAPATGNGTT 831
Query: 511 SDKDTA 516
+ +T+
Sbjct: 832 TTSNTS 837
>YIL063c [U] KOG0864 Ran-binding protein RANBP1 and related RanBD domain
proteins
Length = 327
Score = 67.0 bits (162), Expect = 9e-11
Identities = 65/264 (24%), Positives = 109/264 (40%), Gaps = 21/264 (7%)
Query: 405 GKENSNDEAKKPSFTFGTSTTSEKPAESSKPS-FTFGKASTGSTPFTFGKQETDKKDEKK 463
GK++ KK G + S + K F FG AS T F K++T D
Sbjct: 65 GKKDQEPSHKKIKVDDGKTVESGIVEDDKKEDKFVFGAASKFGTGFGVAKKDTKDGDATT 124
Query: 464 PTFTFGATAASTVPAFSFGANKSEEAPPQGESSGFKISLPFASSAPTSDK---DTAKEVS 520
T + A+ + T F+FG+ S SGF I + S+K D K+
Sbjct: 125 STESLPASDSKTKKPFAFGSGLSF-------GSGFNILKNKTENNSESEKKATDVDKDKV 177
Query: 521 EKNSE---DASAEAQEEPS----KTXXXXXXXXXXXXXFSQRAKLMIFNTETKAYDSRGV 573
SE +AS + +++P + + AKL + + + RGV
Sbjct: 178 HSGSEQLANASEDTKDKPKPLKLQKQEVKSGEESEECIYQVNAKLYQLSNIKEGWKERGV 237
Query: 574 GELKVLQNKEDNTKARILCRSDGMGHILLNTSIIKSFSYE---ALDPNNENLVKCPAIKA 630
G +K+ ++K+D K RI+ RS G+ ++LN ++K F+ + +E ++ A+
Sbjct: 238 GIIKINKSKDDVEKTRIVMRSRGILKVILNIQLVKGFTVQKGFTGSLQSEKFIRLLAVDD 297
Query: 631 EGGLDTYVVKVKQKADGRKLVQAI 654
G Y +K +K +L I
Sbjct: 298 NGDPAQYAIKTGKKETTDELYNII 321
>CE17939 [U] KOG0864 Ran-binding protein RANBP1 and related RanBD domain
proteins
Length = 860
Score = 63.5 bits (153), Expect = 1e-09
Identities = 75/288 (26%), Positives = 117/288 (40%), Gaps = 35/288 (12%)
Query: 399 FTFGAMGKENSNDEAKKPSFTFGTSTTSEKPAESSKPSFTFGKASTGSTPFTFGKQETDK 458
F G E++ PSF F ++ S P KP+F+FGK T ST ++E +
Sbjct: 583 FGGGLSKTESTASSTTTPSFMFAKNSESAFP----KPTFSFGKQQTPSTTAPAKQEENKQ 638
Query: 459 KDEKKPTFTFGATA-ASTVPAFSFGANKS-------------EEAPPQGESS--GFKISL 502
+ K F G T+ +T A S + KS EE Q ++S G K +
Sbjct: 639 SETPKSVFGSGFTSGGATFAALSANSAKSGSIFDAANVKKAQEELAAQKKASIFGSKNTT 698
Query: 503 PFASSAPTSDKDTAKEVSEKNSEDASAEAQEEP----SKTXXXXXXXXXXXXXFSQRAKL 558
+SA + D D E +E + E + +P FS R KL
Sbjct: 699 LNTTSATSHDGD---ETNEDGDGEYEPEVEFKPVIPLPDLVEVKTGEEDEEVMFSARCKL 755
Query: 559 MIFNTETKAYDSRGVGELKVLQNKEDNTKARILCRSDGMGHILLNTSIIKSFSYEALDPN 618
+ ++ K RG+G++K+L K ++ K RI+ R + + + N I KS PN
Sbjct: 756 YKYYSDLKENKERGLGDIKLL--KSNDNKYRIVMRREQVHKLCANFRIEKSMKLSP-KPN 812
Query: 619 NENLV--KCPAIKAEGG---LDTYVVKVKQKADGRKLVQAIKDAQSPM 661
N++ C + + K K +A A++DAQS M
Sbjct: 813 LPNVLTFMCQDFSEDASNADPAIFTAKFKDEATAGAFKTAVQDAQSKM 860
Score = 52.0 bits (123), Expect = 3e-06
Identities = 49/167 (29%), Positives = 68/167 (40%), Gaps = 21/167 (12%)
Query: 463 KPTFTFGATAASTVPA---FSFGANKSEEAPPQGESSGFK--ISLPFASSAPTSDKDTAK 517
KPTF+ A PA FSFG P G K + P A D+D
Sbjct: 191 KPTFSTPTPAVVPKPATTGFSFGGTN-----PATSIFGKKPETASPVVVPAAKDDED--- 242
Query: 518 EVSEKNSEDASAEAQEEP----SKTXXXXXXXXXXXXXFSQRAKLMIFNTETKAYDSRGV 573
E++ ED E + +P F R+KL I+ ETK + RG
Sbjct: 243 ---EEHDEDYEPEGEFKPVIPLPDLVEVKTGEEGEQTMFCNRSKLYIYANETKEWKERGT 299
Query: 574 GELKVLQNKEDNTKARILCRSDGMGHILLNTSIIKSFSYEALDPNNE 620
GELKVL NK D R++ R D + + N I+ S + + + N +
Sbjct: 300 GELKVLYNK-DKKSWRVVMRRDQVLKVCANFPILGSMTIQQMKSNEK 345
>7304093 [U] KOG2724 Nuclear pore complex component NPAP60L/NUP50
Length = 564
Score = 62.4 bits (150), Expect = 2e-09
Identities = 77/290 (26%), Positives = 125/290 (42%), Gaps = 48/290 (16%)
Query: 394 SSKPSFTFGAMGKENSNDEAKKPSFTFGTSTTSEKPAESSKPSFTF-----GKASTGSTP 448
+ KP+ T + G + P +FG++ + P SS F+ G+A + TP
Sbjct: 293 AKKPNCTITSGGTTTTT---ATPLVSFGSTASFTAPVPSSSSIFSLTAKPTGEAKSDDTP 349
Query: 449 ----FTFG-KQETDKKDEKKPTFTFGATAASTVPAFSFGA-NKSEEAPPQGESSGFKISL 502
F+FG K T KKDE P F+ A FSFG + +++ P +GF
Sbjct: 350 KSSIFSFGAKDTTTKKDE--PNFS-----APKTNGFSFGLKSNNDDKPSTSLFAGF---- 398
Query: 503 PFASSAPTSDKDTAKEVSEKNSED------------ASAEAQEEPSKTX---XXXXXXXX 547
AP D AK S NS A+A A+EE +
Sbjct: 399 ---GKAPGGAGDGAKGFSFTNSATPFSLGNIHPPAAAAAPAEEEKEEDTPPKVEFKQVVE 455
Query: 548 XXXXFSQRAKLMIFNTETKAYDSRGVGELKVLQNKEDNTKARILCRSD-GMGHILLNTSI 606
+S+R K +F + K + RGVG L L+ +D+ K ++L R+D +G+IL+N +
Sbjct: 456 DDAIYSKRCK--VFIKKDKDFGDRGVGTL-YLKPVKDSEKIQLLVRADTNLGNILVNLIL 512
Query: 607 IKSFSYEALDPNNENLVKCPAIKAEGGLDTYVVKVKQKADGRKLVQAIKD 656
K + + NN L+ C + + +++VK + L++ IK+
Sbjct: 513 SKGIPCQRMGKNNV-LMVCVPTPEDSKATSLLLRVKTGDEADDLLEKIKE 561
>At3g15970 [U] KOG0864 Ran-binding protein RANBP1 and related RanBD domain
proteins
Length = 465
Score = 55.5 bits (132), Expect = 3e-07
Identities = 70/261 (26%), Positives = 110/261 (41%), Gaps = 44/261 (16%)
Query: 405 GKENSNDEAKKPSFTFGTSTTSEKPAESSKPSFTFGKASTG--STPFTFGKQETDKKDEK 462
GKE +E + + G ++ + + SSK +FT G ASTG ++ F+FG +
Sbjct: 220 GKEGDGNEDTEKNGDSGALSSFHQHS-SSKNAFT-GLASTGFSASSFSFGLVPQE----- 272
Query: 463 KPTFTFGATAA-STVPAFSFGANKSEEAPPQGESSGFKISLPFASSAPTSDKDTAKEVSE 521
G+T + S +FSFG + G SS F S+ A+S T +T
Sbjct: 273 ------GSTGSGSEQSSFSFGQANN------GNSSLFGASV--ATSITTKSTETTTAFPS 318
Query: 522 KNSEDASAEAQEEPSKTXXXXXXXXXXXXXFSQRAKLMIFNTETKAYDSRGVGELKVLQN 581
K +D S E EE K A ++F + RG GELKV +
Sbjct: 319 K--QDVSVETGEENEKAAFT--------------ADSVMFEYLEGGWKERGKGELKVNIS 362
Query: 582 KEDNTKARILCRSDGMGHILLNTSIIKSFSYEALDPNNENLVKCPAIK-AEGGLDTYVVK 640
+N KAR++ RS G + LN S+ +D ++ A+ GL T +K
Sbjct: 363 TTENRKARLVMRSKGNYRLTLNASLYPEMKLAKMDKKGITFACVNSVSDAKDGLSTLALK 422
Query: 641 VKQKA---DGRKLVQAIKDAQ 658
K + R +++ KD++
Sbjct: 423 FKDPTVVEEFRAVIEEHKDSK 443
>7301301 [U] KOG0864 Ran-binding protein RANBP1 and related RanBD domain
proteins
Length = 2659
Score = 53.1 bits (126), Expect = 1e-06
Identities = 66/275 (24%), Positives = 106/275 (38%), Gaps = 47/275 (17%)
Query: 403 AMGKENSNDEAKKPSFTFGTSTTSEKPAESSKPSFTFGKASTGSTPFTFGKQETDKKDEK 462
A G ++ F FG++ PA +F+F A TD K E
Sbjct: 2339 AFGIPKIETQSPAKDFVFGSA-----PAFGQMATFSFTAAKNEKEKDITSNNTTDLKAEG 2393
Query: 463 KP----------TF--------TFGATAASTVPAFSFGANKSEE------APPQGESSGF 498
K TF TF A++ F+ ANK+ A QG + GF
Sbjct: 2394 KEKKELVPETTSTFADLAKTGSTFADLASNPGGTFADLANKTGNDFANLSANSQGTTVGF 2453
Query: 499 KISLP--------------FASSAPTSDKDTAKEVSEKNSEDASAEAQEEPSKTXXXXXX 544
S F S T + D + + ++ D +A E
Sbjct: 2454 NKSAGGGFYNLTHQNAFKNFESPQATEECDDDGDATTDDNYDPHYDAIVELPDEIVVTTG 2513
Query: 545 XXXXXXXFSQRAKLMIFNTETKAYDSRGVGELKVLQNKEDNTKARILCRSDGMGHILLNT 604
F +RAKL ++ E+K + RGVGE+KVL++ E T R++ R + + ++LN
Sbjct: 2514 EENETKLFGERAKLYRYDAESKQWKERGVGEIKVLEHPELQT-FRLIMRQEQIHKLVLNM 2572
Query: 605 SIIKSFSYEALDPNNENLVKCP---AIKAEGGLDT 636
+I S + ++ ++ + A+ AEG +DT
Sbjct: 2573 NISASLQMDYMNAQMKSFLWAGYNYAVDAEGKVDT 2607
>YDR002w [U] KOG0864 Ran-binding protein RANBP1 and related RanBD domain
proteins
Length = 201
Score = 52.4 bits (124), Expect = 2e-06
Identities = 53/186 (28%), Positives = 83/186 (44%), Gaps = 12/186 (6%)
Query: 484 NKSEEAPPQGESSG-FKISLPFASSAPTSDKDT--AKEVSEKNSEDA--SAEAQEEPS-- 536
+K EEA P+ SS F + + P + KD KE ++K +DA S + EP
Sbjct: 11 DKKEEAAPKPPSSAVFSMFGGKKAEKPETKKDEEDTKEETKKEGDDAPESPDIHFEPVVH 70
Query: 537 -KTXXXXXXXXXXXXXFSQRAKLMIFNTETKAYDSRGVGELKVLQNKEDNTKARILCRSD 595
+ + RAKL F+ + K + RG G+ K L+NK+ N K RIL R D
Sbjct: 71 LEKVDVKTMEEDEEVLYKVRAKLFRFDADAKEWKERGTGDCKFLKNKKTN-KVRILMRRD 129
Query: 596 GMGHILLNTSIIKSFSYEALDPNNENLV-KCPAIKAEGGLD--TYVVKVKQKADGRKLVQ 652
I N I ++ + ++ + V C A AEG + T+ ++ K + K +
Sbjct: 130 KTLKICANHIIAPEYTLKPNVGSDRSWVYACTADIAEGEAEAFTFAIRFGSKENADKFKE 189
Query: 653 AIKDAQ 658
+ AQ
Sbjct: 190 EFEKAQ 195
>Hs4826872 [YU] KOG4719 Nuclear pore complex protein
Length = 1475
Score = 52.4 bits (124), Expect = 2e-06
Identities = 46/150 (30%), Positives = 65/150 (42%), Gaps = 20/150 (13%)
Query: 389 TENKDSSKPSFTFGAMGKENSNDEAK-KPSFTFGTSTTSEKPAESSKPSFTFGKASTGST 447
TE K + T GK+ N+E K +P F+FG S + K SSK +F+F
Sbjct: 1103 TEEKQQEPVTSTSLVFGKKADNEEPKCQPVFSFGNSEQT-KDENSSKSTFSFSMTK---- 1157
Query: 448 PFTFGKQETDKKDEKKPTFTFGATAASTV------PAFSFGANKSEEAPPQGESSGFKIS 501
E + + K TF FGA ++T P FSF N S + S+G I
Sbjct: 1158 -----PSEKESEQPAKATFAFGAQTSTTADQGAAKPVFSFLNNSSSSSSTPATSAGGGI- 1211
Query: 502 LPFASSAPTSDKDTAKEVSEKNSEDASAEA 531
F SS +S+ A V ++S S+ A
Sbjct: 1212 --FGSSTSSSNPPVATFVFGQSSNPVSSSA 1239
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.305 0.124 0.336
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,731,760
Number of Sequences: 60738
Number of extensions: 1459174
Number of successful extensions: 4519
Number of sequences better than 1.0e-05: 12
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 4347
Number of HSP's gapped (non-prelim): 80
length of query: 661
length of database: 30,389,216
effective HSP length: 113
effective length of query: 548
effective length of database: 23,525,822
effective search space: 12892150456
effective search space used: 12892150456
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)