ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII1536 good J KOG1767 Translation, ribosomal structure and biogenesis 40S ribosomal protein S25
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII1536 549795 550118 108
(108 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YGR027c [J] KOG1767 40S ribosomal protein S25 130 2e-31
YLR333c [J] KOG1767 40S ribosomal protein S25 129 9e-31
SPBC3D6.15 [J] KOG1767 40S ribosomal protein S25 84 2e-17
SPAC694.05c [J] KOG1767 40S ribosomal protein S25 81 2e-16
At2g21580 [J] KOG1767 40S ribosomal protein S25 70 5e-13
At4g39200 [J] KOG1767 40S ribosomal protein S25 69 1e-12
Hs4506707 [J] KOG1767 40S ribosomal protein S25 67 5e-12
At2g16360 [J] KOG1767 40S ribosomal protein S25 66 7e-12
Hs18546781 [J] KOG1767 40S ribosomal protein S25 64 3e-11
7299415 [J] KOG1767 40S ribosomal protein S25 63 6e-11
CE04691 [J] KOG1767 40S ribosomal protein S25 60 7e-10
Hs18561745 [J] KOG1767 40S ribosomal protein S25 49 1e-06
>YGR027c [J] KOG1767 40S ribosomal protein S25
Length = 108
Score = 130 bits (328), Expect = 2e-31
Identities = 66/108 (61%), Positives = 73/108 (67%)
Query: 1 MPPKQQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVLDQDKFDRIMKEAPTYRYV 60
MPPKQQL V+LDQ+K+DRI+KE PTYRYV
Sbjct: 1 MPPKQQLSKAAKAAAALAGGKKSKKKWSKKSMKDRAQHAVILDQEKYDRILKEVPTYRYV 60
Query: 61 SVSVLVDRFKLGGSLARVALRHLENEGIIKPVSKHSKQAIYTRATASE 108
SVSVLVDR K+GGSLAR+ALRHLE EGIIKP+SKHSKQAIYTRATASE
Sbjct: 61 SVSVLVDRLKIGGSLARIALRHLEKEGIIKPISKHSKQAIYTRATASE 108
>YLR333c [J] KOG1767 40S ribosomal protein S25
Length = 108
Score = 129 bits (323), Expect = 9e-31
Identities = 65/108 (60%), Positives = 72/108 (66%)
Query: 1 MPPKQQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVLDQDKFDRIMKEAPTYRYV 60
MPPKQQL V+LDQ+K+DRI+KE PTYRYV
Sbjct: 1 MPPKQQLSKAAKAAAALAGGKKSKKKWSKKSMKDRAQHAVILDQEKYDRILKEVPTYRYV 60
Query: 61 SVSVLVDRFKLGGSLARVALRHLENEGIIKPVSKHSKQAIYTRATASE 108
SVSVLVDR K+GGSLAR+ALRHLE EGIIKP+SKHSKQAIYTRA ASE
Sbjct: 61 SVSVLVDRLKIGGSLARIALRHLEKEGIIKPISKHSKQAIYTRAAASE 108
>SPBC3D6.15 [J] KOG1767 40S ribosomal protein S25
Length = 88
Score = 84.3 bits (207), Expect = 2e-17
Identities = 40/67 (59%), Positives = 51/67 (75%)
Query: 41 VLDQDKFDRIMKEAPTYRYVSVSVLVDRFKLGGSLARVALRHLENEGIIKPVSKHSKQAI 100
V D+ DRI KE P ++++SVSVLVDR K+ GSLAR+A+R L G+I+ V +HSKQAI
Sbjct: 21 VFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQKVDQHSKQAI 80
Query: 101 YTRATAS 107
YTRA AS
Sbjct: 81 YTRAAAS 87
>SPAC694.05c [J] KOG1767 40S ribosomal protein S25
Length = 89
Score = 81.3 bits (199), Expect = 2e-16
Identities = 38/67 (56%), Positives = 50/67 (73%)
Query: 41 VLDQDKFDRIMKEAPTYRYVSVSVLVDRFKLGGSLARVALRHLENEGIIKPVSKHSKQAI 100
V D+ DRI KE P ++++SVSVLVDR K+ GSLAR+A+R L G+I+ V +HSKQAI
Sbjct: 21 VFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQKVDQHSKQAI 80
Query: 101 YTRATAS 107
YTR A+
Sbjct: 81 YTRVPAA 87
>At2g21580 [J] KOG1767 40S ribosomal protein S25
Length = 108
Score = 70.1 bits (170), Expect = 5e-13
Identities = 32/66 (48%), Positives = 48/66 (72%)
Query: 40 VVLDQDKFDRIMKEAPTYRYVSVSVLVDRFKLGGSLARVALRHLENEGIIKPVSKHSKQA 99
V+ DQ +D+++ EAP ++ ++ S+L DR ++ GSLAR A+R L +G+I+ VS HS Q
Sbjct: 41 VLFDQGTYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAHSSQQ 100
Query: 100 IYTRAT 105
IYTRAT
Sbjct: 101 IYTRAT 106
>At4g39200 [J] KOG1767 40S ribosomal protein S25
Length = 108
Score = 68.9 bits (167), Expect = 1e-12
Identities = 31/66 (46%), Positives = 48/66 (71%)
Query: 40 VVLDQDKFDRIMKEAPTYRYVSVSVLVDRFKLGGSLARVALRHLENEGIIKPVSKHSKQA 99
V+ DQ +D+++ EAP ++ ++ S+L DR ++ GSLAR A+R L +G+I+ V+ HS Q
Sbjct: 41 VLFDQATYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAHSSQQ 100
Query: 100 IYTRAT 105
IYTRAT
Sbjct: 101 IYTRAT 106
>Hs4506707 [J] KOG1767 40S ribosomal protein S25
Length = 125
Score = 66.6 bits (161), Expect = 5e-12
Identities = 31/66 (46%), Positives = 47/66 (70%)
Query: 40 VVLDQDKFDRIMKEAPTYRYVSVSVLVDRFKLGGSLARVALRHLENEGIIKPVSKHSKQA 99
V+ D+ +D++ KE P Y+ ++ +V+ +R K+ GSLAR AL+ L ++G+IK VSKH Q
Sbjct: 48 VLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQV 107
Query: 100 IYTRAT 105
IYTR T
Sbjct: 108 IYTRNT 113
>At2g16360 [J] KOG1767 40S ribosomal protein S25
Length = 125
Score = 66.2 bits (160), Expect = 7e-12
Identities = 32/66 (48%), Positives = 46/66 (69%)
Query: 40 VVLDQDKFDRIMKEAPTYRYVSVSVLVDRFKLGGSLARVALRHLENEGIIKPVSKHSKQA 99
V+ DQ +D++M EAP ++ ++ S+L DR ++ GSLAR A+R L +G I+ VS HS Q
Sbjct: 57 VLFDQATYDKLMSEAPKFKLITPSILSDRLRINGSLARKAIRDLMVKGTIRMVSTHSSQQ 116
Query: 100 IYTRAT 105
I TRAT
Sbjct: 117 INTRAT 122
>Hs18546781 [J] KOG1767 40S ribosomal protein S25
Length = 145
Score = 64.3 bits (155), Expect = 3e-11
Identities = 30/66 (45%), Positives = 47/66 (70%)
Query: 40 VVLDQDKFDRIMKEAPTYRYVSVSVLVDRFKLGGSLARVALRHLENEGIIKPVSKHSKQA 99
V+ D+ ++++ KE P Y+ ++ +V+ +R K+ GSLAR AL+ L ++G+IK VSKH Q
Sbjct: 68 VLFDKATYNKLCKEVPKYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQV 127
Query: 100 IYTRAT 105
IYTR T
Sbjct: 128 IYTRNT 133
>7299415 [J] KOG1767 40S ribosomal protein S25
Length = 136
Score = 63.2 bits (152), Expect = 6e-11
Identities = 29/69 (42%), Positives = 46/69 (66%)
Query: 40 VVLDQDKFDRIMKEAPTYRYVSVSVLVDRFKLGGSLARVALRHLENEGIIKPVSKHSKQA 99
V+ D+ ++++ KE P Y+ ++ SV+ +R K+ GSLA+ AL L +G+IK V +H Q
Sbjct: 66 VLFDKATYEKLYKEVPAYKLITPSVVSERLKIRGSLAKRALIELREKGLIKQVVQHHSQV 125
Query: 100 IYTRATASE 108
IYTRAT +
Sbjct: 126 IYTRATKGD 134
>CE04691 [J] KOG1767 40S ribosomal protein S25
Length = 117
Score = 59.7 bits (143), Expect = 7e-10
Identities = 27/66 (40%), Positives = 44/66 (65%)
Query: 40 VVLDQDKFDRIMKEAPTYRYVSVSVLVDRFKLGGSLARVALRHLENEGIIKPVSKHSKQA 99
V+ DQ +D++ KE TY+ ++ SV+ +R K+ SLA+ L+ L+ +G++K V H Q
Sbjct: 44 VLFDQATYDKLYKEVITYKLITPSVVSERLKVRASLAKAGLKELQAKGLVKCVVHHHGQV 103
Query: 100 IYTRAT 105
+YTRAT
Sbjct: 104 VYTRAT 109
>Hs18561745 [J] KOG1767 40S ribosomal protein S25
Length = 113
Score = 48.9 bits (115), Expect = 1e-06
Identities = 25/66 (37%), Positives = 39/66 (58%), Gaps = 11/66 (16%)
Query: 40 VVLDQDKFDRIMKEAPTYRYVSVSVLVDRFKLGGSLARVALRHLENEGIIKPVSKHSKQA 99
V+ D+ +D++ KE P Y+ ++ +V+ +R K+ GSLAR AL+ +KH Q
Sbjct: 47 VLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQ-----------AKHRAQV 95
Query: 100 IYTRAT 105
IYTR T
Sbjct: 96 IYTRNT 101
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.319 0.134 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,157,794
Number of Sequences: 60738
Number of extensions: 108022
Number of successful extensions: 243
Number of sequences better than 1.0e-05: 12
Number of HSP's better than 0.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 231
Number of HSP's gapped (non-prelim): 12
length of query: 108
length of database: 30,389,216
effective HSP length: 84
effective length of query: 24
effective length of database: 25,287,224
effective search space: 606893376
effective search space used: 606893376
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)