ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII1558 good K KOG0216 Transcription RNA polymerase I, second largest subunit
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII1558 559391 555783 -1203
(1203 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YPR010c [K] KOG0216 RNA polymerase I second largest subunit 2184 0.0
SPBP23A10.07 [K] KOG0216 RNA polymerase I second largest subunit 1531 0.0
7296211 [K] KOG0216 RNA polymerase I second largest subunit 872 0.0
CE05629 [K] KOG0216 RNA polymerase I second largest subunit 850 0.0
At1g29940 [K] KOG0216 RNA polymerase I second largest subunit 798 0.0
ECU03g0440 [K] KOG0216 RNA polymerase I second largest subunit 684 0.0
Hs14149912 [K] KOG0216 RNA polymerase I second largest subunit 493 e-138
Hs4505941 [K] KOG0214 RNA polymerase II second largest subunit 401 e-111
7303535 [K] KOG0215 RNA polymerase III second largest subunit 396 e-109
YOR207c [K] KOG0215 RNA polymerase III second largest subunit 390 e-108
SPAC4G9.08c [K] KOG0215 RNA polymerase III second largest subunit 390 e-108
At4g21710 [K] KOG0214 RNA polymerase II second largest subunit 390 e-108
CE01162 [K] KOG0214 RNA polymerase II second largest subunit 386 e-106
CE00690 [K] KOG0215 RNA polymerase III second largest subunit 383 e-105
At5g45140 [K] KOG0215 RNA polymerase III second largest subunit 382 e-105
7299847 [K] KOG0214 RNA polymerase II second largest subunit 380 e-105
YOR151c [K] KOG0214 RNA polymerase II second largest subunit 363 e-100
ECU11g0370 [K] KOG0215 RNA polymerase III second largest subunit 313 1e-84
ECU10g0250 [K] KOG0214 RNA polymerase II second largest subunit 289 2e-77
At3g18090 [K] KOG0214 RNA polymerase II second largest subunit 273 9e-73
At3g23780 [K] KOG0214 RNA polymerase II second largest subunit 263 9e-70
Hs8922399 [K] KOG0215 RNA polymerase III second largest subunit 218 6e-56
Hs9506619 [K] KOG0216 RNA polymerase I second largest subunit 187 1e-46
AtCh015 [K] KOG0214 RNA polymerase II second largest subunit 129 3e-29
SPAC23G3.01 [K] KOG0214 RNA polymerase II second largest subunit 109 2e-23
Hs22058718 [K] KOG0215 RNA polymerase III second largest subunit 55 7e-07
>YPR010c [K] KOG0216 RNA polymerase I second largest subunit
Length = 1203
Score = 2184 bits (5660), Expect = 0.0
Identities = 1055/1209 (87%), Positives = 1137/1209 (93%), Gaps = 12/1209 (0%)
Query: 1 MSSVILPPQAPVERLNRTASFRTLERESRFINPPKDKSAYPFLADAVQPHIGSFNALTEG 60
MS VI PP RTA FRTLERESRFINPPKDKSA+P L +AVQPHIGSFNALTEG
Sbjct: 1 MSKVIKPPGQA-----RTADFRTLERESRFINPPKDKSAFPLLQEAVQPHIGSFNALTEG 55
Query: 61 PDGGLLNLGAKDIGSKVIFDGKGSDT-----NPNYLGNKLSLSIEQVSISKPTSNDGVSS 115
PDGGLLNLG KDIG KVIFDGK ++ N YLGNKLS+S+EQVSI+KP SNDGVSS
Sbjct: 56 PDGGLLNLGVKDIGEKVIFDGKPLNSEDEISNSGYLGNKLSVSVEQVSIAKPMSNDGVSS 115
Query: 116 AVERKVFPSESRQRLTSYRGKILLKLKWSVNDGEETFTEVRDCGGLPIMLQSNRCHLNKM 175
AVERKV+PSESRQRLTSYRGK+LLKLKWSVN+GEE EVRDCGGLP+MLQSNRCHLNKM
Sbjct: 116 AVERKVYPSESRQRLTSYRGKLLLKLKWSVNNGEENLFEVRDCGGLPVMLQSNRCHLNKM 175
Query: 176 SPYELVEHREESDEFGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFANRGASYSQYGIQ 235
SPYELV+H+EESDE GGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFANRGASYS YGIQ
Sbjct: 176 SPYELVQHKEESDEIGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFANRGASYSHYGIQ 235
Query: 236 IRSVRPDQTSQTNVLHYLNDGQVTFRFSWRKNEYLIPVVMILRALCDTNDREIFDHVVGG 295
IRSVRPDQTSQTNVLHYLNDGQVTFRFSWRKNEYL+PVVMIL+ALC T+DREIFD ++G
Sbjct: 236 IRSVRPDQTSQTNVLHYLNDGQVTFRFSWRKNEYLVPVVMILKALCHTSDREIFDGIIGN 295
Query: 296 DTSNSFLTDRLELLLRGFKKRYPTLQNRKQTLQYLGDKFRVVFQASPDMTDLQVGQELLN 355
D +SFLTDRLELLLRGFKKRYP LQNR Q LQYLGDKFRVVFQASPD +DL+VGQE+L+
Sbjct: 296 DVKDSFLTDRLELLLRGFKKRYPHLQNRTQVLQYLGDKFRVVFQASPDQSDLEVGQEVLD 355
Query: 356 RIVLVHLGEN-NKDKFNMLLFMIRKLYSLVAGECSPDNPDAAQHQEILLGGFLYGMIVKE 414
RIVLVHLG++ ++DKF MLLFMIRKLYSLVAGECSPDNPDA QHQE+LLGGFLYGMI+KE
Sbjct: 356 RIVLVHLGKDGSQDKFRMLLFMIRKLYSLVAGECSPDNPDATQHQEVLLGGFLYGMILKE 415
Query: 415 KIEEYLQNIRLQIQTDINRGLAINFKDQKYMNKVLMRVNENIGSKLQYFLSTGNLVSQSG 474
KI+EYLQNI Q++ DINRG+AINFKD++YM++VLMRVNENIGSK+QYFLSTGNLVSQSG
Sbjct: 416 KIDEYLQNIIAQVRMDINRGMAINFKDKRYMSRVLMRVNENIGSKMQYFLSTGNLVSQSG 475
Query: 475 LDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFFCPVHTPD 534
LDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGF CPVHTPD
Sbjct: 476 LDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPD 535
Query: 535 GSPCGLLNHLSHKCKISTEQSDVSKIPSILYSLGVTPAAHVIAAGPSMCCVQLDGKIIGW 594
GSPCGLLNH +HKC+IST+QSDVS+IPSILYSLGV PA+H AAGPS+CCVQ+DGKIIGW
Sbjct: 536 GSPCGLLNHFAHKCRISTQQSDVSRIPSILYSLGVAPASHTFAAGPSLCCVQIDGKIIGW 595
Query: 595 CSHEQGKVVADTLRFWKVEGKTPGLPVDLEVGYVPPTTSGQYPGLFLFGGHSRMMRPVRY 654
SHEQGK++ADTLR+WKVEGKTPGLP+DLE+GYVPP+T GQYPGL+LFGGHSRM+RPVRY
Sbjct: 596 VSHEQGKIIADTLRYWKVEGKTPGLPIDLEIGYVPPSTRGQYPGLYLFGGHSRMLRPVRY 655
Query: 655 LPLDKEDIVGPFEQVYMNIAVTPEEIENNVHSHVEFSPTNILSILANLTPFSDFNQSPRN 714
LPLDKEDIVGPFEQVYMNIAVTP+EI+NNVH+HVEF+PTNILSILANLTPFSDFNQSPRN
Sbjct: 656 LPLDKEDIVGPFEQVYMNIAVTPQEIQNNVHTHVEFTPTNILSILANLTPFSDFNQSPRN 715
Query: 715 MYQCQMGKQTMGTPGVALCHRSDNKLYRLQTGQTPIVKANLYDDYGMDNFPNGTNAVVAV 774
MYQCQMGKQTMGTPGVALCHRSDNKLYRLQTGQTPIVKANLYDDYGMDNFPNG NAVVAV
Sbjct: 716 MYQCQMGKQTMGTPGVALCHRSDNKLYRLQTGQTPIVKANLYDDYGMDNFPNGFNAVVAV 775
Query: 775 ISYTGYDMDDAMIINKSADERGFGYGTMYKVEKVNLSMNRSRGDPITQHFGFGTDEWPKE 834
ISYTGYDMDDAMIINKSADERGFGYGTMYK EKV+L++NR+RGDPITQHFGFG DEWPKE
Sbjct: 776 ISYTGYDMDDAMIINKSADERGFGYGTMYKTEKVDLALNRNRGDPITQHFGFGNDEWPKE 835
Query: 835 WLEKLDDDGLPLIGTYVEEGDPICAYFDDTLNKTKIKTYHSSEPAYIEEVKLIGDESSKF 894
WLEKLD+DGLP IGTYVEEGDPICAYFDDTLNKTKIKTYHSSEPAYIEEV LIGDES+KF
Sbjct: 836 WLEKLDEDGLPYIGTYVEEGDPICAYFDDTLNKTKIKTYHSSEPAYIEEVNLIGDESNKF 895
Query: 895 QELQAITIKYRIRRTPQIGDKFSSRHGQKGVCSRKWPTIDMPFSETGIQPDVIINPHAFP 954
QELQ ++IKYRIRRTPQIGDKFSSRHGQKGVCSRKWPTIDMPFSETGIQPD+IINPHAFP
Sbjct: 896 QELQTVSIKYRIRRTPQIGDKFSSRHGQKGVCSRKWPTIDMPFSETGIQPDIIINPHAFP 955
Query: 955 SRMTIGMFVESLAGKAGALHGIAQDSTPWTFNESDTPADYFGDQLAKAGYNYHGNEPMYS 1014
SRMTIGMFVESLAGKAGALHGIAQDSTPW FNE DTPADYFG+QLAKAGYNYHGNEPMYS
Sbjct: 956 SRMTIGMFVESLAGKAGALHGIAQDSTPWIFNEDDTPADYFGEQLAKAGYNYHGNEPMYS 1015
Query: 1015 GATGEELRADIYIGVVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEME 1074
GATGEELRADIY+GVVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEME
Sbjct: 1016 GATGEELRADIYVGVVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEME 1075
Query: 1075 RDALIGHGTSFLLQDRLLNCSDYTQTAVCRDCGAILTTQSSVPKIGSISTVRCRRCALKF 1134
RDALIGHGTSFLLQDRLLN SDYTQ +VCR+CG+ILTTQ SVP+IGSISTV CRRC+++F
Sbjct: 1076 RDALIGHGTSFLLQDRLLNSSDYTQASVCRECGSILTTQQSVPRIGSISTVCCRRCSMRF 1135
Query: 1135 DEAKRLITKYESGSEPVHIADSEIWEDGQGNKFVGGGNTTTVAIPFVLKYLDSELAAMGI 1194
++AK+L+TK E G E + I DS+IWEDGQGNKFVGG TTTVAIPFVLKYLDSEL+AMGI
Sbjct: 1136 EDAKKLLTKSEDG-EKIFIDDSQIWEDGQGNKFVGGNETTTVAIPFVLKYLDSELSAMGI 1194
Query: 1195 RLRYNVEPK 1203
RLRYNVEPK
Sbjct: 1195 RLRYNVEPK 1203
>SPBP23A10.07 [K] KOG0216 RNA polymerase I second largest subunit
Length = 1227
Score = 1531 bits (3964), Expect = 0.0
Identities = 748/1197 (62%), Positives = 940/1197 (78%), Gaps = 39/1197 (3%)
Query: 20 SFRTLERESRFINPPKDKSAYPFLADAVQPHIGSFNALTEGPDGGLLNLGAKDIGSKVIF 79
SF+TLERE F NPPKD +++P L AV+PH+ SFNALT + GLLN K+IG K F
Sbjct: 55 SFQTLERERTFKNPPKDGTSFPDLQKAVKPHVDSFNALT---NAGLLNYAVKEIGEKCAF 111
Query: 80 DGKGSDTNPNY-LGNKLSLSIEQVSISKPTSNDGVSSAVERKVFPSESRQRLTSYRGKIL 138
D + GNK+S +++V I+KP + S++ RKV+P+E+R+RLT+Y+ +++
Sbjct: 112 DSITQEEGGALKFGNKISFRVDEVQIAKPMLSSRERSSINRKVYPAEARERLTTYKSRLV 171
Query: 139 LKLKWSVNDGEETFTEVRDCGGLPIMLQSNRCHLNKMSPYELVEHREESDEFGGYFIVNG 198
LK WSVN G +E+R+ G +PIM++SNRCHL +SP EL+ H+EES+E GGYFIVNG
Sbjct: 172 LKFSWSVNGGPRQ-SEMREVGMIPIMVRSNRCHLEGLSPAELIAHKEESEEMGGYFIVNG 230
Query: 199 IEKLIRMLIVQRRNHPMAIIRPSFANRGASYSQYGIQIRSVRPDQTSQTNVLHYLNDGQV 258
IEKLIRMLI+ +RNHP AIIRPSFANRG SYSQYG+ IR VRPDQ+S TN LHYLN+G
Sbjct: 231 IEKLIRMLILPKRNHPTAIIRPSFANRGTSYSQYGLSIRCVRPDQSSLTNTLHYLNNGVT 290
Query: 259 TFRFSWRKNEYLIPVVMILRALCDTNDREIFDHVVGGDTSNSFLTDRLELLLRGFKKRYP 318
FRF WRKNEYLIP +MIL+AL +T+D+EIF+ +VG D N+FLTDR+EL+LR +K
Sbjct: 291 MFRFHWRKNEYLIPSMMILKALLETSDKEIFEGIVGKDLGNTFLTDRVELMLRAYKSY-- 348
Query: 319 TLQNRKQTLQYLGDKFRVVFQASPDMTDLQVGQELLNRIVLVHLGENNKDKFNMLLFMIR 378
L ++ +TLQYLG KFRVV + D+TD++VG+ LL ++VLVHL E KDKF +LLFMIR
Sbjct: 349 GLYSQTETLQYLGSKFRVVLGVAEDLTDVEVGRFLLQKVVLVHLREA-KDKFRLLLFMIR 407
Query: 379 KLYSLVAGECSPDNPDAAQHQEILLGGFLYGMIVKEKIEEYLQNIRLQIQTDINRGL-AI 437
KLY+LVAGEC DNPD+ QHQEILLGGFLYG I+KEKIE++L +IR QI D+ R +
Sbjct: 408 KLYALVAGECCADNPDSPQHQEILLGGFLYGQILKEKIEDWLNSIRAQINLDVRRSAPGV 467
Query: 438 NFKDQKYMNKVLMRVNENIGSKLQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFIS 497
+F D+KY+ +V ++N +IG+KLQYFLSTGNLVS +GLDLQQ +GYTVVAEK+NFYRF+S
Sbjct: 468 DFSDRKYLTRVFSKINNDIGTKLQYFLSTGNLVSNTGLDLQQATGYTVVAEKLNFYRFLS 527
Query: 498 HFRMVHRGSFFAQLKTTTVRKLLPESWGFFCPVHTPDGSPCGLLNHLSHKCKISTEQSDV 557
HFRMVHRG+FFA+LKTTTVRKLLPE+WGF CPVHTPDGSPCGLLNHL+ KC+I T SDV
Sbjct: 528 HFRMVHRGAFFAELKTTTVRKLLPEAWGFMCPVHTPDGSPCGLLNHLARKCEIVTHPSDV 587
Query: 558 SKIPSILYSLGVTPAAHVIAAGPSMCCVQLDGKIIGWCSHEQGKVVADTLRFWKVE---- 613
S+IPS+L SLGV P + V+ CVQLDGKI+GWC+++ K VAD LR K+E
Sbjct: 588 SQIPSLLLSLGVDPPS-VVGHESGWGCVQLDGKIVGWCTYKLAKHVADVLRLMKIEYAVK 646
Query: 614 ------GKTPGLPVDLEVGYVPPTTSGQYPGLFLFGGHSRMMRPVRYLPLDKEDIVGPFE 667
+ +P+DLE+GYVPP+ +GQYPGL+LF +RM+RPV+++ + D++GPFE
Sbjct: 647 LRNGTATEPAKVPLDLEIGYVPPSHNGQYPGLYLFSNPARMVRPVKHISTGELDMLGPFE 706
Query: 668 QVYMNIAVTPEEIENNVHSHVEFSPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGT 727
QVYM+IA P+EI V +HVE+SPTN+LSI+AN+TPFSDFNQSPRNMYQCQMGKQTMGT
Sbjct: 707 QVYMDIACFPKEIVPKVSTHVEYSPTNVLSIVANMTPFSDFNQSPRNMYQCQMGKQTMGT 766
Query: 728 PGVALCHRSDNKLYRLQTGQTPIVKANLYDDYGMDNFPNGTNAVVAVISYTGYDMDDAMI 787
PG AL +R+DNKLYRLQTGQTP+V+ L++ YG+D++PNGTNAVVAVISYTGYDM+DAMI
Sbjct: 767 PGTALRYRTDNKLYRLQTGQTPVVRPKLHNTYGLDHYPNGTNAVVAVISYTGYDMEDAMI 826
Query: 788 INKSADERGFGYGTMYKVEKVNLSMNRSRGDPITQHFGFGTDEWPK-EWLEKLDDDGLPL 846
+NKSA ERGFGYGT+YK E +LS R RG+P+ HFGF P+ EWL+KLD DGLP
Sbjct: 827 LNKSAHERGFGYGTVYKGESFDLSQKRRRGEPVVHHFGFAPGSTPRREWLQKLDADGLPF 886
Query: 847 IGTYVEEGDPICAYFDDTLNKTKIKTYHSSEPAYIEEVKLIGDESSKFQELQAITIKYRI 906
IG +E+GDPI AY+D++ + I+TYH +EP +++EV+L+G++ E Q I +K RI
Sbjct: 887 IGIKLEDGDPIVAYYDESTGQNFIETYHGTEPGFVDEVRLLGNDVGD-SECQQIHVKLRI 945
Query: 907 RRTPQIGDKFSSRHGQKGVCSRKWPTIDMPFSETGIQPDVIINPHAFPSRMTIGMFVESL 966
R+P IGDKFSSRHGQKG+CS+KWPT+DMPF+E+G+QPD+IINPHAFPSRMTIGMF+ESL
Sbjct: 946 TRSPIIGDKFSSRHGQKGICSQKWPTVDMPFTESGMQPDIIINPHAFPSRMTIGMFIESL 1005
Query: 967 AGKAGALHGIAQDSTPWTFNESDTPADYFGDQLAKAGYNYHGNEPMYSGATGEELRADIY 1026
AGKAGA HG+AQDSTP+ ++E T ADYFG+QL KAGYNYHGNEPMYSG TG+E++ADIY
Sbjct: 1006 AGKAGACHGLAQDSTPFIYSEQQTAADYFGEQLVKAGYNYHGNEPMYSGITGQEMKADIY 1065
Query: 1027 IGVVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFL 1086
IGVVYYQRLRHMV+DKFQVR+TGP+++LT QPVKGRKR GGIR GEMERDA+IGHGTSFL
Sbjct: 1066 IGVVYYQRLRHMVSDKFQVRTTGPIHNLTRQPVKGRKRAGGIRFGEMERDAVIGHGTSFL 1125
Query: 1087 LQDRLLNCSDYTQTAVCRDCGAILTTQSSVPK--IGSISTVRCRRCALKFDEAKRLITKY 1144
+QDRL+NCSDY Q+ VCRDCG+I++ S++ +GS S VRCR CA K
Sbjct: 1126 MQDRLMNCSDYAQSWVCRDCGSIISIMSTISMNGVGSASEVRCRSCA-----------KP 1174
Query: 1145 ESGSEPVHIADSEIWEDGQGNKFVGGGNTTTVAIPFVLKYLDSELAAMGIRLRYNVE 1201
G E S+IW+DG G KFVGG NTT +A+P V YL +EL AM I++ V+
Sbjct: 1175 ALGLEDT----SDIWQDGSGKKFVGGTNTTLIALPSVFNYLTAELTAMNIKMMLEVK 1227
>7296211 [K] KOG0216 RNA polymerase I second largest subunit
Length = 1129
Score = 872 bits (2254), Expect = 0.0
Identities = 470/1148 (40%), Positives = 688/1148 (58%), Gaps = 65/1148 (5%)
Query: 65 LLNLGAKDIGS-----KVIFDGKGSDTNPNY----LGNKLSLSIEQVSISKPTSNDGVSS 115
L NLG + S V D PN+ G K+S+ +E + I+KP V
Sbjct: 32 LANLGGPHVDSFDEMLTVGLDNSAKHMIPNHWLSPAGEKISMKVESIWIAKPKVPQDVID 91
Query: 116 AVERKVFPSESRQRLTSYRGKILLKLKWSVNDGEETFTEVRDCGGLPIMLQSNRCHLNKM 175
R+++P++SRQ SY G ++L WSVN ++T + D G +PIML+S C+L +
Sbjct: 92 VRTREIYPTDSRQLHVSYSGMCSVRLGWSVNGVQKTPINM-DLGEVPIMLRSKACNLGQA 150
Query: 176 SPYELVEHREESDEFGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFANRGASYSQYGIQ 235
+P E+V+H E E+GG F++ G EK++RMLI+ RRNHP+ + R S+ +RG ++S G+
Sbjct: 151 TPEEMVKHGEHDSEWGGIFVIRGNEKIVRMLIMTRRNHPICVKRSSWKDRGQNFSDLGML 210
Query: 236 IRSVRPDQTSQTNVLHYLNDGQVTFRFSWRKNEYLIPVVMILRALCDTNDREIFDHVVGG 295
+++VR D++S +NV+HYLN+G F FS K +PV +IL+ L D D EI++ +V G
Sbjct: 211 VQTVREDESSLSNVVHYLNNGTAKFMFSHVKRLSYVPVCLILKCLMDYTDEEIYNRLVQG 270
Query: 296 DTSNSFLTDRLELLLRGFKKRYPTLQNRKQTLQYLGDKFRVVFQASPD-MTDLQVGQELL 354
S+ + ++ +LR + + Q ++G+ FR F P+ D V +L
Sbjct: 271 YESDQYYVSCVQAMLREVQNE--NVYTHAQCKSFIGNLFRARFPEVPEWQPDDDVTDFIL 328
Query: 355 NRIVLVHLGENNKDKFNMLLFMIRKLYSLVAGECSPDNPDAAQHQEILLGGFLYGMIVKE 414
V++HL + +DKF +++FMI+KL+ G+ +N D+A QE+LL G LY + E
Sbjct: 329 RERVMIHL-DTYEDKFQLIVFMIQKLFQCAQGKYKVENVDSAMMQEVLLPGHLYQKYLSE 387
Query: 415 KIEEYLQNIRLQIQTDINRGLAINFKDQKYMNKVLMRVNENIGSKLQYFLSTGNLVSQSG 474
++E ++ +R +Q + A+ + MR +G ++ FL+TGN+ S++G
Sbjct: 388 RVESWVSQVRRCLQKKLTSPDALV---TSAVMTQCMRQAGGVGRAIESFLATGNIASRTG 444
Query: 475 LDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFFCPVHTPD 534
L L Q SG ++AE IN R++SHFR +HRGS+F ++TT R+LLP++WGF CPVHTPD
Sbjct: 445 LGLMQNSGLVIMAENINRMRYMSHFRAIHRGSYFTTMRTTEARQLLPDAWGFICPVHTPD 504
Query: 535 GSPCGLLNHLSHKCKISTEQSD--VSKIPSILYSLGVTPAAHVIAAGPSMCCVQLDGKII 592
G+PCGLLNHL+ C+IS V IP L +G+ P ++ G + V LDGK +
Sbjct: 505 GTPCGLLNHLTLTCEISMRPDPKLVKAIPKHLIDMGMMPLSNRRYLGEKLYVVFLDGKHL 564
Query: 593 GWCSHEQGKVVADTLRFWKVEGKTPGLPVDLEVGYVPPTTSGQYPGLFLFGGHSRMMRPV 652
G + + + D LR+ K+ G P + +E+G++P +GQ+PGL++ G +RMMRPV
Sbjct: 565 GHIHQSEAEKIVDELRYGKIFGTLPQM---MEIGFIPFKKNGQFPGLYIATGPARMMRPV 621
Query: 653 RYLPLDKEDIVGPFEQVYMNIAVTPEEIENNVHSHVEFSPTNILSILANLTPFSDFNQSP 712
L + + +G EQ+YM IA+ +E+ + +H+E + T+ +S LANL P D+NQSP
Sbjct: 622 WNLKWKRVEYIGTLEQLYMEIAIDAKEMYPDFTTHLELAKTHFMSNLANLIPMPDYNQSP 681
Query: 713 RNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQTGQTPIVKANLYDDYGMDNFPNGTNAVV 772
RNMYQCQMGKQTMGTP + ++ NKLYRLQT TP+ + YD+ +D+F GTNA+V
Sbjct: 682 RNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPGTPLFRPVHYDNIQLDDFAMGTNAIV 741
Query: 773 AVISYTGYDMDDAMIINKSADERGFGYGTMYKVEKVNLSMNRSRGDPITQHFGFGTDEWP 832
AVISYTGYDM+DAMIINK+A ERGF YG++YK + + L S F
Sbjct: 742 AVISYTGYDMEDAMIINKAAYERGFAYGSIYKTKFLTLDKKSSY---------FARHPHM 792
Query: 833 KEWLEKLDDDGLPLIGTYVEEGDPICAYFDDTLNKTKIKTYHSSEPAYIEEVKLIGDESS 892
E ++ LD DGLP G+ + G P+ YFD + K+ E +E ++ +G
Sbjct: 793 PELIKHLDTDGLPHPGSKLSYGSPLYCYFDGEVATYKVVKMDEKEDCIVESIRQLGSFDL 852
Query: 893 KFQELQAITIKYRIRRTPQIGDKFSSRHGQKGVCSRKWPTIDMPFSETGIQPDVIINPHA 952
+++ AIT+ R+ R IGDKF+SR GQKG+CS+K+P D+PF+E+G+ PD++ NPH
Sbjct: 853 SPKKMVAITL--RVPRPATIGDKFASRAGQKGICSQKYPAEDLPFTESGLIPDIVFNPHG 910
Query: 953 FPSRMTIGMFVESLAGKAGALHGIAQDSTPWTFNESDTPADYFGDQLAKAGYNYHGNEPM 1012
FPSRMTI M +E++AGK A+HG D+TP+ F+E +T DYFG L GYNY+G E +
Sbjct: 911 FPSRMTIAMMIETMAGKGAAIHGNVYDATPFRFSEENTAIDYFGKMLEAGGYNYYGTERL 970
Query: 1013 YSGATGEELRADIYIGVVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGE 1072
YSG G E+ ADI+ GVV+YQRLRHMV DK+QVRSTG V + T QP+KGRKR GG+R GE
Sbjct: 971 YSGVDGREMTADIFFGVVHYQRLRHMVFDKWQVRSTGAVEARTHQPIKGRKRGGGVRFGE 1030
Query: 1073 MERDALIGHGTSFLLQDRLLNCSDYTQTAVCRDCGAILTTQSSVPKIGSISTVRCRRCAL 1132
MERDALI HG +FLLQDRL + SD T T VC CG+IL
Sbjct: 1031 MERDALISHGAAFLLQDRLFHNSDKTHTLVCHKCGSILA--------------------- 1069
Query: 1133 KFDEAKRLITKYESGSEPVHIADSEIWEDGQGNKFVGGGNTTTVAIPFVLKYLDSELAAM 1192
+R++ + E+G + D + + + IPF KYL +EL+++
Sbjct: 1070 ---PLQRIVKRNETGGLSSQPDTCRLCGD--------NSSVSMIEIPFSFKYLVTELSSV 1118
Query: 1193 GIRLRYNV 1200
I R+ +
Sbjct: 1119 NINARFKL 1126
>CE05629 [K] KOG0216 RNA polymerase I second largest subunit
Length = 1127
Score = 850 bits (2195), Expect = 0.0
Identities = 469/1131 (41%), Positives = 683/1131 (59%), Gaps = 70/1131 (6%)
Query: 92 GNKLSLSIEQVSISKPTSNDGVSSAVER-KVFPSESRQRLTSYRGKILLKLKWSVNDGEE 150
G+ +++ + KPT + G + + P+E RQR +Y G + + + VN
Sbjct: 38 GDAVTMKFTSAQLHKPTLDTGAKLTSDTLPLLPAECRQRGLTYAGNLKVGIDVHVNGSRL 97
Query: 151 TFTEVRDCGGLPIMLQSNRCHLNKMSPYELVEHREESDEFGGYFIVNGIEKLIRMLIVQR 210
E+ G +PIML+S CHL MS ELV EE E GGYFIVNG EK+IR+LI R
Sbjct: 98 DIIEII-LGKVPIMLRSEGCHLRGMSRKELVVAGEEPIEKGGYFIVNGSEKVIRLLIANR 156
Query: 211 RNHPMAIIRPSFANRGASYSQYGIQIRSVRPDQTSQTNVLHYLNDGQVTFRFSWRKNEYL 270
RN P+AIIR +F +G +S++G+ +RSV+ + T+ LHYL+ G + +R+ +
Sbjct: 157 RNFPIAIIRKTFKEKGKLFSEFGVMMRSVKENHTAVMMTLHYLDTGTMQLALQFRREIFY 216
Query: 271 IPVVMILRALCDTNDREIFDHVVGGDTSNSFLTDRLELLLRGFKKRYPTLQNRKQTLQYL 330
+P++ I++AL D ND I G + F + + +L ++ + N++ ++ +
Sbjct: 217 VPLMYIVKALTDKNDAVISAGFKRGRNQDQFYSSCILNMLAQCQEE--EILNQEAAIRAI 274
Query: 331 GDKFRVVF--QASPDMTDLQVGQELLNRIVLVHLGENNKDKFNMLLFMIRKLYSLVAGEC 388
G +FRV + +P DL+ G+ ++ VL+HL +++++KF+ L +M +KL +LV GEC
Sbjct: 275 GSRFRVAVSDRVAPWEDDLEAGRFIIRECVLIHL-DSDEEKFHTLAYMTQKLIALVKGEC 333
Query: 389 SPDNPDAAQHQEILLGGFLYGMIVKEKIEEYLQNIRLQIQTDINRGLAINFKDQKYMNKV 448
+P+ PD Q QE + G + +I++E++E + +R +++ +R KD +
Sbjct: 334 APETPDNPQFQEASVSGHILLLILRERMENIIGMVRRKLEYMSSR------KDFILTSAA 387
Query: 449 LMRVNEN-----IGSKLQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMVH 503
+++ N I + YFL+TGNLV++ GL LQQ SG++V+AE+IN RF+SHFR +H
Sbjct: 388 ILKALGNHTGGEITRGMAYFLATGNLVTRVGLALQQESGFSVIAERINQLRFVSHFRAIH 447
Query: 504 RGSFFAQLKTTTVRKLLPESWGFFCPVHTPDGSPCGLLNHLSHKCKISTEQSDVSKIPSI 563
RG+FF +++TT VRKL PE+WGF CPVHTPDG+PCGLLNH++ C+I T+ SD S +PS+
Sbjct: 448 RGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGAPCGLLNHVTASCRIVTDLSDNSNVPSL 507
Query: 564 LYSLGVTPAAHVIAAGPS--MCCVQLDGKIIGWCSHEQGKVVADTLRFWKVEGKTPGLPV 621
L LG+ V A P + V ++G+ +G+ + + LR KV K +P
Sbjct: 508 LAELGMYTHKTVALAPPGEELYPVLMNGRFLGYVPITKAASIERYLRCAKV-AKDARIPY 566
Query: 622 DLEVGYVPPTTS-----GQYPGLFLFGGHSRMMRPVRYLPLDKEDIVGPFEQVYMNIAVT 676
E+ V +T QYPG+++ R++RPVR L +D + +G FEQVY+++ +
Sbjct: 567 TSEIALVRRSTDIKNIQTQYPGIYILSDAGRLIRPVRNLAMDAVEHIGTFEQVYLSVVLD 626
Query: 677 PEEIENNVHSHVEFSPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRS 736
PEE E V H E P+ + S NL PF D NQSPRN+YQCQMGKQTMGT A R+
Sbjct: 627 PEEAEPGVTMHQELHPSCLFSFAGNLIPFPDHNQSPRNVYQCQMGKQTMGTAVHAWHSRA 686
Query: 737 DNKLYRLQTGQTPIVKANLYDDYGMDNFPNGTNAVVAVISYTGYDMDDAMIINKSADERG 796
DNK+YRLQ Q P++K Y+ Y MD +P GTNA VAVISYTGYDM+DAM INK++ +RG
Sbjct: 687 DNKMYRLQFPQQPMLKLEAYEKYEMDEYPLGTNACVAVISYTGYDMEDAMTINKASYQRG 746
Query: 797 FGYGTMYKVEKVNLSMNRSRGDPITQHFGFGTDEWPKEWLEKLDDDGLPLIGTYVEEGDP 856
F +GT+ KVE++NL R R ++ P+E ++ + DGLP+ G +
Sbjct: 747 FAHGTVIKVERINLVTERERKTIFYRN--------PREEIKTVGPDGLPIPGRRYFLDEV 798
Query: 857 ICAYFDDTLNKTKIKTYHSSEPAYIEEVKLI----GDESSKFQELQAITIKYRIRRTPQI 912
F+ + +H +EPAY V+++ GD +K +Q +RI R P I
Sbjct: 799 YYVTFNMETGDFRTHKFHYAEPAYCGLVRIVEQGEGDSGAKHALIQ-----WRIERNPII 853
Query: 913 GDKFSSRHGQKGVCSRKWPTIDMPFSETGIQPDVIINPHAFPSRMTIGMFVESLAGKAGA 972
GDKF+SRHGQKG+ S WP +PFSETG+ PD+I NPH FPSRMTIGM +ES+AGKA A
Sbjct: 854 GDKFASRHGQKGINSFLWPVESLPFSETGMVPDIIFNPHGFPSRMTIGMMIESMAGKAAA 913
Query: 973 LHGIAQDSTPWTFNESDTPADYFGDQLAKAGYNYHGNEPMYSGATGEELRADIYIGVVYY 1032
HG D++P+ FNE +T ++FG+ L KAGYNY+GNE YSG G ++ I+ G+VYY
Sbjct: 914 THGENYDASPFVFNEDNTAINHFGELLTKAGYNYYGNETFYSGVDGRQMEMQIFFGIVYY 973
Query: 1033 QRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQDRLL 1092
QRLRHM+ DKFQVR+TGP++ +T QPVKGRK+ GGIR GEMERDA+I HGTSF+LQDRLL
Sbjct: 974 QRLRHMIADKFQVRATGPIDPITHQPVKGRKKGGGIRFGEMERDAIIAHGTSFVLQDRLL 1033
Query: 1093 NCSDYTQTAVCRDCGAILTTQSSVPKIGSISTVRCRRCALKFDEAKRLITKYESGSEPVH 1152
NCSD CR CG++L+ S + GS L+ K EP+
Sbjct: 1034 NCSDRDVAYACRRCGSLLSVLMS-SRAGS-----------------HLLKKKRKDDEPLD 1075
Query: 1153 IADSEIWE--DGQGNKFVGGGNTTTVAIPFVLKYLDSELAAMGIRLRYNVE 1201
+++ D F+ + +P V +YL +ELAAM ++++ +E
Sbjct: 1076 YTETQRCRTCDKDDQVFL-------LQVPRVFRYLTAELAAMNVKIKLGIE 1119
>At1g29940 [K] KOG0216 RNA polymerase I second largest subunit
Length = 1114
Score = 798 bits (2060), Expect = 0.0
Identities = 470/1109 (42%), Positives = 671/1109 (60%), Gaps = 82/1109 (7%)
Query: 125 ESRQRLTSYRGKILLKLKWSVNDGEETFTEVRDCGGLPIMLQSNRCHLNKMSPYELVEHR 184
+ RQ SY G + + + NDG + D G PIML S C L +L++ +
Sbjct: 39 DCRQAKISYTGTFMADVCFKYNDGV-VVRDKFDFGQFPIMLMSKLCSLKGADCRKLLKCK 97
Query: 185 EESDEFGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFANRGASYSQYGIQIRSVRPDQT 244
E + E GGYFI+NGIE++ R +I +RNHP ++IR SF +R YS + R VR DQ+
Sbjct: 98 ESTSEMGGYFILNGIERVFRCVIAPKRNHPTSMIRNSFRDRKEGYSSKAVVTRCVRDDQS 157
Query: 245 SQTNVLHYLNDGQVTFRFSWRKNEYLIPVVMILRALCDTNDREIFD--------HVVGGD 296
S T L+YL +G F EYL+PV ++L+AL ++ D EI++ H GD
Sbjct: 158 SVTVKLYYLRNGSARVGFWIVGREYLLPVGLVLKALTNSCDEEIYESLNCCYSEHYGRGD 217
Query: 297 TS--NSFLTDRLELLLRGFKKRYPTLQNRKQTLQYLGDKFRVVFQASPDMTDLQVGQELL 354
+ + +R +++L + R L R+Q ++LG F+ V V + +L
Sbjct: 218 GAIGTQLVRERAKIILD--EVRDLGLFTREQCRKHLGQHFQPVLDG--------VAEAVL 267
Query: 355 NRIVLVHLGENNKDKFNMLLFMIRKLYSLVAGECSPDNPDAAQHQEILLGGFLYGMIVKE 414
+ VHL +N+ DKFN+L+F+I+KLYSLV PDNPD+ Q+QEIL+ G + + +KE
Sbjct: 268 RDYLFVHL-DNDHDKFNLLIFIIQKLYSLVDQTSLPDNPDSLQNQEILVPGHVITIYLKE 326
Query: 415 KIEEYLQNIRLQIQTDI-NRGLAINFKDQKYMNKVLMR-VNENIGSKLQYFLSTGNLVSQ 472
K+EE+L+ + ++ ++ N +F+ + K++ + +IG+ ++ L TG L +Q
Sbjct: 327 KLEEWLRKCKSLLKDELDNTNSKFSFESLADVKKLINKNPPRSIGTSIETLLKTGALKTQ 386
Query: 473 SGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFFCPVHT 532
SGLDLQQ +GYTV AE++NF RF+S FR VHRG+ FA L+TTTVRKLLPESWGF CPVHT
Sbjct: 387 SGLDLQQRAGYTVQAERLNFLRFLSFFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHT 446
Query: 533 PDGSPCGLLNHLSHKCKISTEQSDVSKIPS----------ILYSLGVTPAAH--VIAAGP 580
PDG+PCGLLNH++ +I+++ I +L G+ P+ V A P
Sbjct: 447 PDGTPCGLLNHMTRTSRITSQFDSKGNIRDFLKIRKSVVDVLTGAGMVPSLPKLVRAGPP 506
Query: 581 SMCCVQLDGKIIGWCSHEQGKVVADTLRFWKVEGKTPGLPVDLEVGYVPPTTSGQYPGLF 640
+ V LDG+++G S V +R KVE + +P DLEVGYVP + G YPGL+
Sbjct: 507 KVIHVLLDGQVVGTLSSNLVTKVVSYIRRLKVEAPSV-IPEDLEVGYVPTSMGGSYPGLY 565
Query: 641 LFGGHSRMMRPVRYL--PLDKEDIVGPFEQVYMNIAVTPEEIENNVHSHVEFSPTNILSI 698
L +R +RPV+ + P D +++GPFEQV I + I +H E PT ++S+
Sbjct: 566 LASCPARFIRPVKNISIPSDNIELIGPFEQVANPINII--FISTFPATHEEIHPTGMISV 623
Query: 699 LANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQTGQTPIVKANLYDD 758
+ANLTP+SD NQSPRNMYQCQM KQTM AL R+D K+Y LQT Q+P+V+ Y
Sbjct: 624 VANLTPWSDHNQSPRNMYQCQMAKQTMAYSTQALQFRADQKIYHLQTPQSPVVRTKTYTT 683
Query: 759 YGMDNFPNGTNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYKVEKVNLSMNRSRGD 818
Y +D P GTNA+VAV+++TG+DM+DAMI+NKS+ ERG +G +Y+ E ++LS SR D
Sbjct: 684 YSIDENPTGTNAIVAVLAHTGFDMEDAMILNKSSVERGMCHGQIYQTENIDLSDQNSRFD 743
Query: 819 PITQHFGFGTDEWPKEWLEKLDDDGLPLIGTYVEEGDPICAYFDDTLNKTKIKTYHSSEP 878
++ F T+ K ++D DGLP +G + +P C+ +D+ NKT+ ++P
Sbjct: 744 SGSKSFRRSTN---KAEHFRIDADGLPSVGQKLYPDEPYCSIYDEVTNKTRHMKRKGTDP 800
Query: 879 AYIEEVKLIGDESSKFQELQAITIKYRIRRTPQIGDKFSSRHGQKGVCSRKWPTIDMPFS 938
++ V + D SK + Q I++R R P IGDKFSSRHGQKGVCS+ WP IDMPF+
Sbjct: 801 VIVDFVSV--DMKSK-KHPQRANIRFRHARNPIIGDKFSSRHGQKGVCSQLWPDIDMPFN 857
Query: 939 -ETGIQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPW------TFNESDTP 991
TG++PD+IINPHAFPSRMTI M +ES+A K G+LHG D+TP+ T E ++
Sbjct: 858 GVTGMRPDLIINPHAFPSRMTIAMLLESIAAKGGSLHGKFVDATPFRDAVKKTNGEEESK 917
Query: 992 A----DYFGDQLAKAGYNYHGNEPMYSGATGEELRADIYIGVVYYQRLRHMVNDKFQVRS 1047
+ D G L + G+N++G E +YSG G EL+ +I++G VYYQRLRHMV+DKFQVRS
Sbjct: 918 SSLLVDDLGSMLKEKGFNHYGTETLYSGYLGVELKCEIFMGPVYYQRLRHMVSDKFQVRS 977
Query: 1048 TGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQDRLLNCSDYTQTAVCRDCG 1107
TG V+ LT QP+KGRKR GGIR GEMERD+L+ HG S+LL DRL SD+ VC CG
Sbjct: 978 TGQVDQLTHQPIKGRKRGGGIRFGEMERDSLLAHGASYLLHDRLHTSSDHHIADVCSLCG 1037
Query: 1108 AILTTQSSVPKIGSISTVRCRRCALKFDEAKRLITKYESGSEPVHIADSEIWEDGQGNKF 1167
++LT+ S+ V+ ++ + I K G P + + +G +
Sbjct: 1038 SLLTS--------SVVNVQQKKLIQE-------IGKLPPGRTPKKVTCYSC-KTSKGME- 1080
Query: 1168 VGGGNTTTVAIPFVLKYLDSELAAMGIRL 1196
TVA+P+V +YL +ELA+M I++
Sbjct: 1081 -------TVAMPYVFRYLAAELASMNIKM 1102
>ECU03g0440 [K] KOG0216 RNA polymerase I second largest subunit
Length = 1062
Score = 684 bits (1766), Expect = 0.0
Identities = 417/1184 (35%), Positives = 631/1184 (53%), Gaps = 162/1184 (13%)
Query: 43 LADAVQPHIGSFNALTEGPDGGLLNLGAKDIGSKVIFDGKGSDTNPNYLGNKLSLSIEQV 102
L DA + HI ++NA+ G I D + P G K + +E++
Sbjct: 15 LKDAAKAHIEAYNAIFNGN----------------ILDNLVAGVPPLVKG-KTKIIVEEI 57
Query: 103 SISKPTSNDGVSSAVERKVFPSESRQRLTSYRGKILLKLKWSVNDGEETFTEVRDCGGLP 162
++ P +D +V+R++ P E R+R +Y+GK+++++ +D + TE + G P
Sbjct: 58 HVAPPFLSDKDHISVDRRLLPRECRERGLTYKGKMVVRVSL-FHDNKHVVTEDKSAGHFP 116
Query: 163 IMLQSNRCHLNKMSPYELVEHREESDEFGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSF 222
IM++S CHLN + E E+ DE GGYFI+NGI++ IR I+Q+RNH A
Sbjct: 117 IMVRSTLCHLNGIKNKN--EVGEDEDEIGGYFIINGIDRFIRFNIMQKRNHIFAF---KM 171
Query: 223 ANRGASYSQYGIQIRSVRPDQTSQTNVLHYLNDGQVTFRFSWRKNEYLIPVVMILRALCD 282
+ + +S Y + +R V D+ N LHY DG V + +K E+L P+V++L+AL +
Sbjct: 172 RKKTSFFSDYMVSMRCVGRDEIGHMNFLHYCTDGNVVIKIFHKKYEFLFPLVLVLKALVN 231
Query: 283 TNDREIFDHVVGGDTSNSFLTDRLELLLRGFKKRYPTLQNRKQTLQYLGDKFRVVFQASP 342
T D E+F + GG R LL+ F + + +R + L Y+G +F +
Sbjct: 232 TTDEELFGALGGGQ--------RAVHLLKCFAEH--NVFSRTECLDYIGSRFSAILNFE- 280
Query: 343 DMTDLQVGQELLNRIVLVHLGENNKDKFNMLLFMIRKLYSLVAGECSPDNPDAAQHQEIL 402
+ +V +E+L++ V+ HL +N DKFN L+ RKL+S V E + D+PD+ + E+
Sbjct: 281 --SKAEVAEEILSKYVVSHLS-SNLDKFNFLILAARKLFSFVDNEITEDDPDSPSNHELG 337
Query: 403 LGGFLYGMIVKEKIEEYL----------------QNIRLQIQTDINRGLAINFKDQKYMN 446
+ ++++IEE++ + +L+ + G + D +
Sbjct: 338 TETQIISSFLRDRIEEFMRFFSMMCRKTYYKLEGEKRKLEGDSVTESGFCEDELDISKIR 397
Query: 447 KVLMRVNENIGSKLQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGS 506
++ R + NIG +++ FLS+G++ S D+ Q G+++ AE+INFY+++SHFR V+RG+
Sbjct: 398 EIFKRTSINIGQRMELFLSSGSITLTSCSDILQTLGFSITAERINFYKYLSHFRGVNRGT 457
Query: 507 FFAQLKTTTVRKLLPESWGFFCPVHTPDGSPCGLLNHLSHKCKISTEQSDVSKIPSILYS 566
+ T++RKL PESWGF CPVHTPDG+PCG+L H++ + ++ + D + IL+
Sbjct: 458 HIPSM-VTSIRKLRPESWGFLCPVHTPDGAPCGVLLHMAKEAEVVSRDDDFNT--DILFE 514
Query: 567 LGVTPAAHVIAAGPSMCCVQLDGKIIGWCSHEQGKVVADTLRFWKVEGKTPGLPVDLEVG 626
GV P+ + G V ++G+++G S +D R + GL +++
Sbjct: 515 FGVVPSIRGVEMGIP---VLVNGRVVGSTSSP-----SDLTRMVREYRNRNGLMIEVVYT 566
Query: 627 YVPPTTSGQYPGLFLFGGHSRMMRPVRYLPLDKEDIVGPFEQVYMNIAVTPEEIENNVHS 686
P +P + +F R R V L E+ +G EQV++NI + + +
Sbjct: 567 SEPK----MFPSVCIFSSVGRFARKVMNRRLGSEEWIGIMEQVFLNIDTEEGAGDGDYY- 621
Query: 687 HVEFSPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQTG 746
E + IL I+A L P+SD NQSPRNMYQCQM KQ +G P + R+D +Y +
Sbjct: 622 --EIDKSGILGIIAGLIPYSDHNQSPRNMYQCQMAKQAIGHPAHNIRTRTDPTMYTVNYL 679
Query: 747 QTPIVKANLYDDYGMDNFPNGTNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYKVE 806
Q+PIV+ Y+ + ++P G N +VAV+SYT YDM+DA++INK++ +RG G +YK E
Sbjct: 680 QSPIVRTEGYEM--VKDYPVGINCMVAVLSYTAYDMEDALVINKNSIDRGLFTGYVYKTE 737
Query: 807 KVNLSMNRSRGDPITQHFGFGTDEWPKEWLEKLDDDGLPLIGTYVEEGDPICAYFDDTLN 866
KV P+ + + F LP +G +++ D + Y D
Sbjct: 738 KV----------PLDKGYFFTY---------------LPSVGQRIQKDDTLYRYVDQDGR 772
Query: 867 KTKIKTYHSSEPAYIEEVKLIGDESSKFQELQAITIKYRIRRTPQIGDKFSSRHGQKGVC 926
+ + K Y +EP ++ V++ ++ + + T RI R+P IGDKFSSRHGQKGVC
Sbjct: 773 EYE-KRYLGTEPGIVDIVRVFENDMGE----RCATFTIRIVRSPMIGDKFSSRHGQKGVC 827
Query: 927 SRKWPTIDMPFSETGIQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWTFN 986
S WP IDMPF+E+G PD+IINPHAFPSRMTIGM +ES+AGK G L G QD T + +
Sbjct: 828 SMHWPGIDMPFTESGCVPDIIINPHAFPSRMTIGMLIESIAGKVGCLSGNEQDGTVFKKS 887
Query: 987 ----------ESDTPADYFGDQLAKAGYNYHGNEPMYSGATGEELRADIYIGVVYYQRLR 1036
E +Y +L + G+NY+GNEPMYSG G E RADI++GVVYYQRL+
Sbjct: 888 FLLEQEEGDDEKVRRKEYLCSELRRHGFNYYGNEPMYSGVAGNEFRADIFVGVVYYQRLK 947
Query: 1037 HMVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQDRLLNCSD 1096
HMV DKFQVR+ G V S T QPV GRK+ GGIR GEMERDALI HG S+LLQDRLL SD
Sbjct: 948 HMVGDKFQVRTKGAVVSTTRQPVGGRKKRGGIRFGEMERDALISHGASYLLQDRLLKSSD 1007
Query: 1097 YTQTAVCRDCGAILTTQSSVPKIGSISTVRCRRCALKFDEAKRLITKYESGSEPVHIADS 1156
T C C +IL T +
Sbjct: 1008 STVFEYCGTCRSILFTNN------------------------------------------ 1025
Query: 1157 EIWEDGQGNKFVGGGNTTTVAIPFVLKYLDSELAAMGIRLRYNV 1200
G+ G + V +P+V KYL EL AM I+++ ++
Sbjct: 1026 -------GDCICGSSDLKAVEMPYVFKYLCCELLAMNIKVQIDL 1062
>Hs14149912 [K] KOG0216 RNA polymerase I second largest subunit
Length = 459
Score = 493 bits (1268), Expect = e-138
Identities = 237/433 (54%), Positives = 313/433 (71%), Gaps = 4/433 (0%)
Query: 671 MNIAVTPEEIENNVHSHVEFSPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGV 730
MN+A+ +E+ V +H E P ++LS++AN PFSD NQSPRNMYQCQMGKQTMG P +
Sbjct: 1 MNVAIFEDEVFAGVTTHQELFPHSLLSVIANFIPFSDLNQSPRNMYQCQMGKQTMGFPLL 60
Query: 731 ALCHRSDNKLYRLQTGQTPIVKANLYDDYGMDNFPNGTNAVVAVISYTGYDMDDAMIINK 790
RSDNKLYRLQT Q+P+V+ ++YD Y MDN+P GTNA+VAVISYTGYDM+DAMI+NK
Sbjct: 61 TYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNK 120
Query: 791 SADERGFGYGTMYKVEKVNLSMNRSRGDPITQHFGFGTDEWPKEWLEKLDDDGLPLIGTY 850
++ ERGF +G++YK E ++LS +GD FG L+KLDDDGLP IG
Sbjct: 121 ASWERGFAHGSVYKSEFIDLSEKIKQGD---SSLVFGIKPGDPRVLQKLDDDGLPFIGAK 177
Query: 851 VEEGDPICAYFDDTLNKTKIKTYHSSEPAYIEEVKLIGDESSKFQELQAITIKYRIRRTP 910
++ GDP +Y + ++ + Y S E ++ +K+ +++ + + + I R+ R P
Sbjct: 178 LQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGS-GKFKCVCITMRVPRNP 236
Query: 911 QIGDKFSSRHGQKGVCSRKWPTIDMPFSETGIQPDVIINPHAFPSRMTIGMFVESLAGKA 970
IGDKF+SRHGQKG+ SR WP DMPF+E+G+ PD++ NPH FPSRMTIGM +ES+AGK+
Sbjct: 237 TIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKS 296
Query: 971 GALHGIAQDSTPWTFNESDTPADYFGDQLAKAGYNYHGNEPMYSGATGEELRADIYIGVV 1030
ALHG+ D+TP+ F+E ++ +YFG+ L AGYN++G E +YSG +G EL ADI+IGVV
Sbjct: 297 AALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVV 356
Query: 1031 YYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQDR 1090
YYQRLRHMV+DKFQVR+TG + +T QP+ GR GGIR GEMERDAL+ HGTSFLL DR
Sbjct: 357 YYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDR 416
Query: 1091 LLNCSDYTQTAVC 1103
L NCSD + VC
Sbjct: 417 LFNCSDRSVAHVC 429
>Hs4505941 [K] KOG0214 RNA polymerase II second largest subunit
Length = 1174
Score = 401 bits (1030), Expect = e-111
Identities = 337/1125 (29%), Positives = 527/1125 (45%), Gaps = 142/1125 (12%)
Query: 88 PNYLGNKLSLSIEQVSISKPT--SNDGVSSAVERKVFPSESRQRLTSYRGKILLKL-KWS 144
P YL L EQ+ +SKPT DG S + P+E+R R +Y + + + K
Sbjct: 82 PRYL-----LKFEQIYLSKPTHWERDGAPSPM----MPNEARLRNLTYSAPLYVDITKTV 132
Query: 145 VNDGEE---TFTEVRDCGGLPIMLQSNRCHLNKMSPYELVEHREESDEFGGYFIVNGIEK 201
+ +GEE T + G +PIML+S C LN ++ +L E E + GGYFI+NG EK
Sbjct: 133 IKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEK 192
Query: 202 LIRMLIVQRRNHPMAIIRPSFANRGASYSQYGIQIRSV-----RPDQTSQTNVLHYLNDG 256
+ LI Q + + FA + + Y+ G + RS RP T ++L G
Sbjct: 193 V---LIAQEKMATNTVY--VFAKKDSKYAYTG-ECRSCLENSSRPTSTIWVSMLARGGQG 246
Query: 257 --------QVTFRFSWRKNEYLIPVVMILRALCDTNDREIFDHVVGGDTSNSFLTDRLEL 308
++ + K E +P++++ RAL +DR+I +H++ + +E+
Sbjct: 247 AKKSAIGQRIVATLPYIKQE--VPIIIVFRALGFVSDRDILEHIIYDFED----PEMMEM 300
Query: 309 LLRGFKKRYPTLQNRKQTLQYLGDKFRVVFQASPDMTD---LQVGQELLNRIVLVHLGEN 365
+ + + +Q + L ++G + A P +T ++ +E+L + +L H+G +
Sbjct: 301 VKPSLDEAF-VIQEQNVALNFIGSR-----GAKPGVTKEKRIKYAKEVLQKEMLPHVGVS 354
Query: 366 N---KDKFNMLLFMIRKLYSLVAGECSPDNPDAAQHQEILLGGFLYGMIVKEKIEEYLQN 422
+ K L +M+ +L G D+ D ++ + L G L + + + L+
Sbjct: 355 DFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKE 414
Query: 423 IRLQIQTDINRGLAINFKDQKYMNKVLMRVNENIGSKLQYFLSTGNLVSQSGLDLQQVSG 482
+R+ Q I+RG K N L I L+Y L+TGN Q Q +G
Sbjct: 415 VRIYAQKFIDRG--------KDFNLELAIKTRIISDGLKYSLATGNWGDQKKAH-QARAG 465
Query: 483 YTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFFCPVHTPDGSPCGLLN 542
+ V ++ F +SH R ++ K R+L WG CP TP+G GL+
Sbjct: 466 VSQVLNRLTFASTLSHLRRLN-SPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVK 524
Query: 543 HLSHKCKISTEQSDVSKIPSILYSLGVTPAAHVI-AAGPSMCCVQLDGKIIGWCSHEQGK 601
+L+ IS S S I L + + AA + ++G +G H+ +
Sbjct: 525 NLALMAYISVG-SQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVG--IHKDPE 581
Query: 602 VVADTLRFWKVEGKTPGLPVDLEVGYVPPTTSGQYPGLFLFGGHSRMMRPV--------- 652
+ +TLR + + +D+ V V + + ++ R+ RP+
Sbjct: 582 QLMNTLRKLRRQ-------MDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLL 634
Query: 653 ---RYLPLDKE-----------------DIVGPFEQVYMNIAVTPEEIEN------NVHS 686
R++ KE + + E+ + +A+TP++++ + ++
Sbjct: 635 LKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYT 694
Query: 687 HVEFSPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQTG 746
H E P+ IL + A++ PF D NQSPRN YQ MGKQ MG R D + L
Sbjct: 695 HCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYP 754
Query: 747 QTPIVKANLYDDYGMDNFPNGTNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYKVE 806
Q P+V + P G N++VA+ SYTGY+ +D++I+N+SA +RGF Y+
Sbjct: 755 QKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSY 814
Query: 807 KVNLSMNRSRGDPITQHFGFGTDEWPKEWL-EKLDDDGLPLIGTYVEEGDPICAYF---- 861
K S + + + T + + + +KLDDDGL G V D I
Sbjct: 815 KEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLP 874
Query: 862 --DDTLNKTKIKT--------YHSSEPAYIEEVKL-IGDESSKFQELQAITIKYRIRRTP 910
+D L T + +SE +++V + + E KF + I+ R R P
Sbjct: 875 ENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCK-----IRVRSVRIP 929
Query: 911 QIGDKFSSRHGQKGVCSRKWPTIDMPFSETGIQPDVIINPHAFPSRMTIGMFVESLAGKA 970
QIGDKF+SRHGQKG C ++ DMPF+ GI PD+IINPHA PSRMTIG +E L GK
Sbjct: 930 QIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKV 989
Query: 971 GALHGIAQDSTPWTFNESDTPADYFGDQLAKAGYNYHGNEPMYSGATGEELRADIYIGVV 1030
A G D+TP FN++ + L+ GY+ GNE +Y+G TG ++ + I+IG
Sbjct: 990 SANKGEIGDATP--FNDA-VNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPT 1046
Query: 1031 YYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQDR 1090
YYQRL+HMV+DK R+ GP+ L QP++GR R GG+R GEMERD I HG + L++R
Sbjct: 1047 YYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRER 1106
Query: 1091 LLNCSDYTQTAVCRDCG--AILTTQSSVPKIGSISTVRCRRCALK 1133
L SD Q VC CG AI T++ T CR C K
Sbjct: 1107 LFEASDPYQVHVCNLCGIMAIANTRT--------HTYECRGCRNK 1143
>7303535 [K] KOG0215 RNA polymerase III second largest subunit
Length = 1137
Score = 396 bits (1017), Expect = e-109
Identities = 323/1071 (30%), Positives = 503/1071 (46%), Gaps = 133/1071 (12%)
Query: 102 VSISKPTSNDGVSSAVERKVFPSESRQRLTSYRGKILLKLKWSVNDGEETFTEVRDCGGL 161
V + KP +DG + + + P E R R T+Y I + ++++ + G +
Sbjct: 88 VRVGKPDIDDGFN--ITKATTPHECRLRDTTYSAPITVDIEYTRGTQRIKRNNLL-IGRM 144
Query: 162 PIMLQSNRCHLNKMSPYELVEHREESDEFGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPS 221
P+ML+ + C L S +EL + E + GGYF+V G EK+I ++Q + ++
Sbjct: 145 PLMLRCSNCALTGKSEFELSKLNECPLDPGGYFVVRGQEKVI---LIQEQLSWNKMLTED 201
Query: 222 FANRGASYSQYGIQIRSVRPDQTSQTNVL-----HYLNDGQVTFRFSWRKNEYLIPVVMI 276
F Q+ S ++ S+T VL +YL +T IP+V+I
Sbjct: 202 FNG------VVQCQVTSSTHEKKSRTLVLSKHGKYYLKHNSMTDD---------IPIVVI 246
Query: 277 LRALCDTNDREIFDHV-VGGDTSNSFLTDRLELLLRGFKKRYPTLQNRKQTLQYLGDKFR 335
+AL +D+EI + + + N F L+ + + T Q + L+Y+G K
Sbjct: 247 FKALGVVSDQEIQSLIGIDSKSQNRFGAS----LIDAYNLKVFTQQ---RALEYMGSKLV 299
Query: 336 VV-FQASPDMTDLQVGQELLNRIVLVHLGENNKDKFNMLL------FMIRKLYSLVAGEC 388
V FQ++ T + +ELL +L H+ +N FN+ + M+R++ + +
Sbjct: 300 VKRFQSATTKTPSEEARELLLTTILAHVPVDN---FNLQMKAIYVSMMVRRVMAAELDKT 356
Query: 389 SPDNPDAAQHQEILLGGFLYGMIVKEKIEEYLQNIRLQIQTDINRGLAINFKDQKYMNKV 448
D+ D ++ + L G L M+ ++ + ++ +I + A F K+M
Sbjct: 357 LFDDRDYYGNKRLELAGSLLSMMFEDLFKRMNWELKTIADKNIPKVKAAQFDVVKHMRAA 416
Query: 449 LMRVNENIGSKLQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFF 508
I + L+ +S+GN + + +G T V ++++ + V+ F
Sbjct: 417 ------QITAGLESAISSGNWTIKRFK--MERAGVTQVLSRLSYISALGMMTRVN-SQFE 467
Query: 509 AQLKTTTVRKLLPESWGFFCPVHTPDGSPCGLLNHLSHKCKISTEQSDVSKIPSILYSLG 568
K + R L P WG CP TP+G CGL+ +L+ I+TE + + + ++ G
Sbjct: 468 KTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEE-RPVMIVAFNAG 526
Query: 569 VTPAAHVIAA---GPSMCCVQLDGKIIGWCSHEQGKVVADTLRFWKVEGKTPGLPVDLEV 625
V V P++ V ++G ++G + K + LR+ + +G+
Sbjct: 527 VEDIREVSGNPINNPNVFLVFINGNVLGLTLNH--KHLVRNLRYMRRKGRMGS------- 577
Query: 626 GYVPPTTSGQYPGLFLFGGHSRMMRPVRYL----PLDKED----------------IVGP 665
YV TS +++ R+ RP + PL K+ + G
Sbjct: 578 -YVSVHTSYTQRCIYIHTDGGRLCRPYVIVENRRPLVKQHHLDELNRGIRKFDDFLLDGL 636
Query: 666 FEQVYMN------IAVTPEEIENNVHSHVEFSPTNILSILANLTPFSDFNQSPRNMYQCQ 719
E + +N IA ++IE+ +H+E P +L + A L P+ NQSPRN YQC
Sbjct: 637 IEYLDVNEENDSFIAWNEDQIEDRT-THLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCA 695
Query: 720 MGKQTMGTPGVALCHRSDNKLYRLQTGQTPIVKANLYDDYGMDNFPNGTNAVVAVISYTG 779
MGKQ MG G +R D+ +Y L P+VK+ + D P G NA VAV+SY+G
Sbjct: 696 MGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVKSKTIELTNFDKLPAGQNATVAVMSYSG 755
Query: 780 YDMDDAMIINKSADERGFGYGTMYKVEK------VNLSMNRSRG---DPITQHFGFGTDE 830
YD++DA+I+NK++ +RG+G +YK K N + +R G D +T F D
Sbjct: 756 YDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRIMGPMKDALTNKVIFKHD- 814
Query: 831 WPKEWLEKLDDDGLPLIGTYVEEG--------------DPICAYFDDTLNKTKIKTYHSS 876
LD DG+ G V+ +P+ +Y
Sbjct: 815 -------VLDTDGIVAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVPYTAVPISYKGP 867
Query: 877 EPAYIEEVKLIGDESSKFQELQAITIKYRIRRTPQIGDKFSSRHGQKGVCSRKWPTIDMP 936
EP+YIE V + S+ +E I I R R P+IGDKFSSRHGQKGV DMP
Sbjct: 868 EPSYIERVMV----SANAEEDFLIKILLRQTRIPEIGDKFSSRHGQKGVTGLIVEQEDMP 923
Query: 937 FSETGIQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWTFNESDTPADYFG 996
F++ GI PD+I+NPH FPSRMT+G +E L GKAG L G T + + +
Sbjct: 924 FNDFGICPDMIMNPHGFPSRMTVGKTLELLGGKAGLLEGKFHYGTAF----GGSKVEDIQ 979
Query: 997 DQLAKAGYNYHGNEPMYSGATGEELRADIYIGVVYYQRLRHMVNDKFQVRSTGPVNSLTM 1056
+L + G+NY G + YSG TG L A IY G VYYQ+L+HMV DK R+ GP LT
Sbjct: 980 AELERHGFNYVGKDFFYSGITGTPLEAYIYSGPVYYQKLKHMVQDKMHARARGPKAVLTR 1039
Query: 1057 QPVKGRKRHGGIRVGEMERDALIGHGTSFLLQDRLLNCSDYTQTAVCRDCG 1107
QP +GR R GG+R+GEMERD LI +G S L+ +RL+ SD + VCR CG
Sbjct: 1040 QPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDAFEVDVCRTCG 1090
>YOR207c [K] KOG0215 RNA polymerase III second largest subunit
Length = 1149
Score = 390 bits (1003), Expect = e-108
Identities = 327/1077 (30%), Positives = 515/1077 (47%), Gaps = 115/1077 (10%)
Query: 84 SDTNPNYLGNKLSLSIEQVSISKPTSNDGVSSAVERKVFPSESRQRLTSYRGKILLKLKW 143
SD +P + L + + K +S SS + P E R R +Y I + +++
Sbjct: 85 SDVDPEFY-----LKYVDIRVGKKSS----SSTKDYLTPPHECRLRDMTYSAPIYVDIEY 135
Query: 144 SVNDGEETFTEVRDCGGLPIMLQSNRCHLNKMSPYELVEHREESDEFGGYFIVNGIEKLI 203
+ +V + G +PIML+SN+C L ++ + E + GGYFIVNG EK+I
Sbjct: 136 TRGRNIIMHKDV-EIGRMPIMLRSNKCILYDADESKMAKLNECPLDPGGYFIVNGTEKVI 194
Query: 204 RMLIVQRRNHPMAIIRPSFANRGASYSQYGIQIRSVRPDQTSQTNVLHYLNDGQVTFRFS 263
+VQ + II + +G + + S ++ S+T V+ +G++ + +
Sbjct: 195 ---LVQEQLSKNRIIVEADEKKGIVQAS----VTSSTHERKSKTYVI--TKNGKIYLKHN 245
Query: 264 WRKNEYLIPVVMILRALCDTNDREIFDHVVGGDTSNSFLTDRLELLLRGFKKRYPTLQNR 323
E IP+ ++L+A +D EI V G D+S D + L K + +
Sbjct: 246 SIAEE--IPIAIVLKACGILSDLEIMQLVCGNDSSYQ---DIFAVNLEESSKL--DIYTQ 298
Query: 324 KQTLQYLGDKFRVVFQASPDMTDLQVGQELLNRIVLVHLGENNKDKFNMLLFMIRKLYSL 383
+Q L+Y+G K + + + +T LQ G E + V+ HL D L++ +
Sbjct: 299 QQALEYIGAKVKTMRRQK--LTILQEGIEAIATTVIAHLTVEALDFREKALYIAMMTRRV 356
Query: 384 VAGECSP---DNPDAAQHQEILLGGFLYGMIVKEKIEEYLQNIRLQIQTDINRGLAINFK 440
V +P D+ D ++ + L G L ++ ++ +++ + +L I + +
Sbjct: 357 VMAMYNPKMIDDRDYVGNKRLELAGQLISLLFEDLFKKFNNDFKLSIDKVLKK------P 410
Query: 441 DQKYMNKVLMRVN---ENIGSKLQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFIS 497
++ L+ +N NI S L +STGN S +++ +G T V ++++ IS
Sbjct: 411 NRAMEYDALLSINVHSNNITSGLNRAISTGNW-SLKRFKMER-AGVTHVLSRLSY---IS 465
Query: 498 HFRMVHRGS--FFAQLKTTTVRKLLPESWGFFCPVHTPDGSPCGLLNHLSHKCKISTEQS 555
M+ R S F K + R L P +G C TP+G CGL+ +L+ I+T+
Sbjct: 466 ALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDE 525
Query: 556 DVSKIPSILYSLGVTPAAHVIAAGPSMCC-VQLDGKIIGWCSHEQGKVVA--DTLRFWKV 612
+ I + Y LGV + +A + V L+G +IG V R KV
Sbjct: 526 E-EPIKKLCYVLGVEDITLIDSASLHLNYGVYLNGTLIGSIRFPTKFVTQFRHLRRTGKV 584
Query: 613 EGKTPGLPVDLEVGYVPPTTSGQY--PGLFLFGGHSRM----MRPVRYLPLDKEDIV--G 664
++ T G+ P + + G SR+ +R + LD +D + G
Sbjct: 585 SEFISIYSNSHQMAVHIATDGGRICRPLIIVSDGQSRVKDIHLRKLLDGELDFDDFLKLG 644
Query: 665 PFEQVYMN------IAVTPEEIENNVHSHVEFSPTNILSILANLTPFSDFNQSPRNMYQC 718
E + +N IA+ ++I ++ +H+E P IL +A L P+ NQSPRN YQC
Sbjct: 645 LVEYLDVNEENDSYIALYEKDIVPSM-THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQC 703
Query: 719 QMGKQTMGTPGVALCHRSDNKLYRLQTGQTPIVKANLYDDYGMDNFPNGTNAVVAVISYT 778
MGKQ +G R D LY + Q P+VK + D P G NA VAV+SY+
Sbjct: 704 AMGKQAIGAIAYNQFKRIDTLLYLMTYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYS 763
Query: 779 GYDMDDAMIINKSADERGFGYGTMYKVEKVNLSMNRSR-------------GDPITQHFG 825
GYD++DA+++NKS+ +RGFG + L + GDPI QH
Sbjct: 764 GYDIEDALVLNKSSIDRGFGRCETRRKTTTVLKRYANHTQDIIGGMRVDENGDPIWQH-- 821
Query: 826 FGTDEWPKEWLEKLDDDGLPLIGTYVEEGD-------PICAYFDDTLNKTKIKT------ 872
+ L DGL +G V+ G P + N ++T
Sbjct: 822 -----------QSLGPDGLGEVGMKVQSGQIYINKSVPTNSADAPNPNNVNVQTQYREAP 870
Query: 873 --YHSSEPAYIEEVKLIGDESSKFQELQAITIKYRIRRTPQIGDKFSSRHGQKGVCSRKW 930
Y EP++I++V + ++ + I + R R P++GDKFSSRHGQKGVC
Sbjct: 871 VIYRGPEPSHIDQVMMSVSDNDQ----ALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIV 926
Query: 931 PTIDMPFSETGIQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWTFNESDT 990
DMPF++ GI PD+I+NPH FPSRMT+G +E ++GKAG L+G + T + ++ +
Sbjct: 927 KQEDMPFNDQGIVPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGTLEYGTCFGGSKLED 986
Query: 991 PADYFGDQLAKAGYNYHGNEPMYSGATGEELRADIYIGVVYYQRLRHMVNDKFQVRSTGP 1050
+ DQ G+NY G + +YSG TGE L+A I+ G +YYQ+L+HMV DK R+ GP
Sbjct: 987 MSKILVDQ----GFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGP 1042
Query: 1051 VNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQDRLLNCSDYTQTAVCRDCG 1107
LT QP +GR R GG+R+GEMERD +I +G S LL +RL+ SD + VC CG
Sbjct: 1043 RAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCDKCG 1099
>SPAC4G9.08c [K] KOG0215 RNA polymerase III second largest subunit
Length = 1165
Score = 390 bits (1002), Expect = e-108
Identities = 322/1062 (30%), Positives = 522/1062 (48%), Gaps = 102/1062 (9%)
Query: 102 VSISKPTSNDGVSSAVERKVFPSESRQRLTSYRGKILLKLKWSVNDGEETFTEVRDCGGL 161
+ + P D + A++ + P E R R +Y I + ++++ V G +
Sbjct: 104 IRVGAPVRTD--ADAIQASISPHECRLRDLTYGANIYVDIEYTRGKQVVRRRNV-PIGRM 160
Query: 162 PIMLQSNRCHLNKMSPYELVEHREESDEFGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPS 221
P+ML+SN+C L+ + E+ E + GGYFIV G EK+I +VQ + II +
Sbjct: 161 PVMLRSNKCVLSGKNEMEMAALNECPLDPGGYFIVKGTEKVI---LVQEQLSKNRIIVEA 217
Query: 222 FANRGASYSQYGIQIRSVRPDQTSQTNVLHYLNDGQVTFRFSWRKNEYLIPVVMILRALC 281
+G + + S ++ S+T V+ +G++ + + ++ IP+V++L+A+
Sbjct: 218 EPKKGL----WQASVTSSTHERKSKTYVI--TKNGKLYLKHNSVADD--IPIVVVLKAMG 269
Query: 282 DTNDREIFDHVVGGDTS-NSFLTDRLELLLRGFKKRYPTLQNRKQTLQYLGDKFRVVFQA 340
+D+EIF+ V G + S +E + + +Q L+Y+G + +V +A
Sbjct: 270 LQSDQEIFELVAGAEASYQDLFAPSIEECAK------LNIYTAQQALEYIGARVKVNRRA 323
Query: 341 SPD-MTDLQVGQELLNRIVLVHLGENN---KDKFNMLLFMIRKLYSLVAGECSPDNPDAA 396
+ + + E+L +VL H+ N + K + M R++ + D+ D
Sbjct: 324 GANRLPPHEEALEVLAAVVLAHINVFNLEFRPKAVYIGIMARRVLMAMVDPLQVDDRDYV 383
Query: 397 QHQEILLGGFLYGMIVKEKIEEYLQNIRLQIQTDINRGLAINFKDQKY--MNKVLMRVNE 454
++ + L G L ++ ++ +++ +++L +I++ L + Q++ N++ + ++
Sbjct: 384 GNKRLELAGQLLALLFEDLFKKFNSDLKL----NIDKVLKKPHRTQEFDAYNQLTVH-SD 438
Query: 455 NIGSKLQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMVHR--GSFFAQLK 512
+I + LSTGN S +++ +G T V ++++ IS M+ R F K
Sbjct: 439 HITQGMVRALSTGNW-SLKRFKMER-AGVTHVLSRLSY---ISALGMMTRITSQFEKTRK 493
Query: 513 TTTVRKLLPESWGFFCPVHTPDGSPCGLLNHLSHKCKISTEQSDVSKIPSILYSLGVTPA 572
+ R L +G C TP+G CGL+ +L+ I+T++ + I + Y+ G+
Sbjct: 494 VSGPRSLQASQFGMLCTSDTPEGEACGLVKNLALMTHITTDEEE-EPIIKLAYAFGIEDI 552
Query: 573 AHVIAA----GPSMCCVQLDGKIIGWCSHEQGKVVADTLRFWKVEGKTP---GLPVDLEV 625
HVI+ V L+G I+G + + + R + GK G+ ++
Sbjct: 553 -HVISGRELHSHGTYLVYLNGAILGISRYPS--LFVASFRKLRRSGKISPFIGIFINTHQ 609
Query: 626 GYVPPTTSGQY---PGLFLFGGHSRM-MRPVRYLPLDK---EDIV--GPFEQVYMN---- 672
V +T G P + + G ++ + +R L K ED + G E V +N
Sbjct: 610 RAVFISTDGGRICRPLIIVQNGLPKVESKHIRLLKEGKWGFEDFLKQGLVEYVDVNEEND 669
Query: 673 --IAVTPEEIENNVHSHVEFSPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGV 730
I+V +I + +H+E P IL +A L P+ NQSPRN YQC MGKQ +G
Sbjct: 670 SLISVYERDITPDT-THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAY 728
Query: 731 ALCHRSDNKLYRLQTGQTPIVKANLYDDYGMDNFPNGTNAVVAVISYTGYDMDDAMIINK 790
R D LY + Q P+VK + G D P G NA VA++SY+GYD++DA+++NK
Sbjct: 729 NQLQRIDTLLYLMVYPQQPMVKTKTIELIGYDKLPAGQNATVAIMSYSGYDIEDALVLNK 788
Query: 791 SADERGFGYGTMYKVEKVNLSMNRSRGDPITQHFGFGTDEWPKEWLEKL------DDDGL 844
S+ +RGFG ++ V + R P H G + E E + +DDGL
Sbjct: 789 SSIDRGFGRCQVFHKHSVIV-----RKYPNGTHDRIGDPQRDPETGEVVWKHGVVEDDGL 843
Query: 845 PLIGTYVEEGD-------PICAYFDD-TLNKTKI---------KTYHSSEPAYIEEVKLI 887
+G V+ G P A + TL T+ TY + EP YI++V L
Sbjct: 844 AGVGCRVQPGQIYVNKQTPTNALDNSITLGHTQTVESGYKATPMTYKAPEPGYIDKVMLT 903
Query: 888 GDESSKFQELQAITIKYRIRRTPQIGDKFSSRHGQKGVCSRKWPTIDMPFSETGIQPDVI 947
+S + I + R R P++GDKFSSRHGQKGVC DMPF++ GI PD+I
Sbjct: 904 TTDSDQ----TLIKVLMRQTRRPELGDKFSSRHGQKGVCGVIVQQEDMPFNDQGICPDII 959
Query: 948 INPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWTFNESDTPADYFGDQLAKAGYNYH 1007
+NPH FPSRMT+G +E L+GK G L G + T + T + L + GYNY
Sbjct: 960 MNPHGFPSRMTVGKMIELLSGKVGVLRGTLEYGTCF----GGTKVEDASRILVEHGYNYS 1015
Query: 1008 GNEPMYSGATGEELRADIYIGVVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGG 1067
G + + SG TGE L A I++G +YYQ+L+HMV DK R+ GP LT QP +GR R GG
Sbjct: 1016 GKDMLTSGITGETLEAYIFMGPIYYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGG 1075
Query: 1068 IRVGEMERDALIGHGTSFLLQDRLLNCSDYTQTAVCRDCGAI 1109
+R+GEMERD LI +G S LL +RL+ SD VC CG +
Sbjct: 1076 LRLGEMERDCLIAYGASQLLLERLMISSDACDVDVCGQCGLL 1117
>At4g21710 [K] KOG0214 RNA polymerase II second largest subunit
Length = 1188
Score = 390 bits (1002), Expect = e-108
Identities = 327/1120 (29%), Positives = 509/1120 (45%), Gaps = 138/1120 (12%)
Query: 97 LSIEQVSISKP--TSNDGVSSAVERKVFPSESRQRLTSYRGKILLKLKWSV----NDGEE 150
+S Q+ +SKP T +DG ++ + FP +R R +Y + + + V +DGEE
Sbjct: 88 ISFGQIYLSKPMMTESDGETATL----FPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEE 143
Query: 151 TFTEVRD-----CGGLPIMLQSNRCHLNKMSPYELVEHREESDEFGGYFIVNGIEKLIRM 205
TE +D G +PIML+S+ C L + S +L E E + GGYFI+NG EK++
Sbjct: 144 V-TETQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFIINGSEKVLIA 202
Query: 206 LIVQRRNHPMAIIRPSFANRGASYSQYGIQIRSVRPDQTSQTNVLHYLNDGQVTFRFSWR 265
NH F R + Y ++RS+ +Q + + + + +
Sbjct: 203 QEKMSTNHVYV-----FKKRQPNKYAYVGEVRSMAENQNRPPSTMFVRMLARASAK-GGS 256
Query: 266 KNEYL----------IPVVMILRALCDTNDREIFDHVVGGDTSNSFLTDRLELLLRGFKK 315
+Y+ IP++++ RAL D++I +H+ T +ELL ++
Sbjct: 257 SGQYIRCTLPYIRTEIPIIIVFRALGFVADKDILEHICYDFAD----TQMMELLRPSLEE 312
Query: 316 RYPTLQNRKQTLQYLGDKFRVVFQASPDMTDLQVGQELLNRIVLVHLGENNK---DKFNM 372
+ +QN+ L Y+G + V ++ +++L + +L H+G K
Sbjct: 313 AF-VIQNQLVALDYIGKRGATVGVTKEKR--IKYARDILQKEMLPHVGIGEHCETKKAYY 369
Query: 373 LLFMIRKLYSLVAGECSPDNPDAAQHQEILLGGFLYGMIVKEKIEEYLQNIRLQIQTDIN 432
++I +L G D+ D ++ + L G L G + + + +++R +Q ++
Sbjct: 370 FGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVD 429
Query: 433 RGLAINFKDQKYMNKVLMRVNENIGSKLQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINF 492
G +N + + K + I S L+Y L+TGN + + +G + V ++ +
Sbjct: 430 NGKEVNLQ---FAIKA-----KTITSGLKYSLATGNWGQANAAGTR--AGVSQVLNRLTY 479
Query: 493 YRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFFCPVHTPDGSPCGLLNHLSHKCKIST 552
+SH R ++ + K R+L WG CP TP+G CGL+ +L+ I T
Sbjct: 480 ASTLSHLRRLN-SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYI-T 537
Query: 553 EQSDVSKIPSILYSLGVTPAAHVIAAG-PSMCCVQLDGKIIGWCSHEQGKVVADTLRFWK 611
S I L G + + P + ++G +G H ++ TLR +
Sbjct: 538 VGSAAYPILEFLEEWGTENFEEISPSVIPQATKIFVNGMWVG--VHRDPDMLVKTLRRLR 595
Query: 612 VEGKTPGLPVDLEVGYVPPTTSGQYPGLFLFGGHSRMMRPV-----RYLPLDKEDI---- 662
+ V+ EVG V + L ++ + R RP+ + L + K DI
Sbjct: 596 RR-----VDVNTEVGVVRDIRLKE---LRIYTDYGRCSRPLFIVDNQKLLIKKRDIYALQ 647
Query: 663 ---------------------VGPFEQVYMNIAVT----------PEEIENNVHSHVEFS 691
+ E+ I++T PEE ++H E
Sbjct: 648 QRESAEEDGWHHLVAKGFIEYIDTEEEETTMISMTISDLVQARLRPEEAYTENYTHCEIH 707
Query: 692 PTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQTGQTPIV 751
P+ IL + A++ PF D NQSPRN YQ MGKQ MG R D Y L Q P+V
Sbjct: 708 PSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLV 767
Query: 752 KANLYDDYGMDNFPNGTNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYKVEKVNLS 811
+ P G NA+VA+ Y+GY+ +D++I+N+S+ +RGF ++ +
Sbjct: 768 TTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---D 824
Query: 812 MNRSRGDPITQHFGF----GTDEWPKEWLEKLDDDGLPLIGTYVEEGDPICAYF-----D 862
+ G + + FG T +KLDDDGL GT V D I D
Sbjct: 825 EEKKMGTLVKEDFGRPDRGSTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQD 884
Query: 863 DTLNKTKIKTY--HS-----SEPAYIEEVKLIGDESSKFQELQAITIKYRIRRTPQIGDK 915
+ ++ T HS SE +++V L ++ L+ + ++ R R PQIGDK
Sbjct: 885 EAQGQSSRYTRRDHSISLRHSETGMVDQVLL----TTNADGLRFVKVRVRSVRIPQIGDK 940
Query: 916 FSSRHGQKGVCSRKWPTIDMPFSETGIQPDVIINPHAFPSRMTIGMFVESLAGKAGALHG 975
FSSRHGQKG + DMP++ G+ PD+I+NPHA PSRMTIG +E + GK A G
Sbjct: 941 FSSRHGQKGTVGMTYTQEDMPWTIEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMG 1000
Query: 976 IAQDSTPWTFNESDTPADYFGDQLAKAGYNYHGNEPMYSGATGEELRADIYIGVVYYQRL 1035
D+TP+T D D L K GY G E MY+G TG L A I++G YYQRL
Sbjct: 1001 KEGDATPFT----DVTVDNISKALHKCGYQMRGFERMYNGHTGRPLTAMIFLGPTYYQRL 1056
Query: 1036 RHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQDRLLNCS 1095
+HMV+DK R GPV LT QP +GR R GG+R GEMERD +I HG + L++RL + S
Sbjct: 1057 KHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQS 1116
Query: 1096 DYTQTAVCRDCGAILTTQSSVPKIGSISTVRCRRCALKFD 1135
D + VC CG I ++ CR C K D
Sbjct: 1117 DAYRVHVCEVCGLIAIANLKK------NSFECRGCKNKTD 1150
>CE01162 [K] KOG0214 RNA polymerase II second largest subunit
Length = 1193
Score = 386 bits (991), Expect = e-106
Identities = 334/1186 (28%), Positives = 528/1186 (44%), Gaps = 169/1186 (14%)
Query: 94 KLSLSIEQVSISKPTSNDGVSSAVERKVFPSESRQRLTSYRGKILLKLKWSVNDGEETFT 153
K SL Q+ +SKPT + + P+E+R R +Y + + + V +
Sbjct: 90 KFSLKFNQIYLSKPTHWE--KDGAPMPMMPNEARLRNLTYASPLYVDITKVVTRDDSATE 147
Query: 154 EVRD---CGGLPIMLQSNRCHLNKMSPYELVEHREESDEFGGYFIVNGIEKLIRMLIVQR 210
+V D G +P+ML+S+ C L+ M+ +L E E + GGYF++NG EK+ LI Q
Sbjct: 148 KVYDKVFVGKVPVMLRSSYCMLSNMTDRDLTELNECPLDPGGYFVINGSEKV---LIAQE 204
Query: 211 RNHPMAIIRPSFANRGASYSQYGIQIRSV-----RPDQTSQTNVLHYLNDGQVTFRFSWR 265
+ + F+ + Y+ + + RS RP T N+L G R
Sbjct: 205 KMATNTVY--VFSMKDGKYA-FKTECRSCLENSSRPTSTMWVNMLARGGGGGKKTAMGQR 261
Query: 266 KNEYL------IPVVMILRALCDTNDREIFDHVVGGDTSNSFLTDRLELLLRGFKKRYPT 319
L IP++++ RAL +DR+I H++ + +E++ + +
Sbjct: 262 IIGILPYIKQEIPIMIVFRALGFVSDRDILGHIIYDFND----PEMMEMVKPSLDEAF-V 316
Query: 320 LQNRKQTLQYLGDKFRVVFQASPDMTD---LQVGQELLNRIVLVHLGENNKDKFNMLLF- 375
+Q + L ++G + A P +T ++ +E+L + +L H+G + + F
Sbjct: 317 IQEQNVALNFIGAR-----GAKPGVTREQRIKYAREILQKELLPHVGVSEHCETKKAFFI 371
Query: 376 --MIRKLYSLVAGECSPDNPDAAQHQEILLGGFLYGMIVKEKIEEYLQNIRLQIQTDINR 433
M+ +L G D+ D ++ + L G L + + L+ +R+ Q IN
Sbjct: 372 GYMVHRLLLAALGRRELDDRDHIGNKRLDLAGPLLAFLFRSLFRNLLKEMRMTAQKYIN- 430
Query: 434 GLAINFKDQKYMNKVLMRVNENIGSKLQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFY 493
K+ + V ++ + I L Y L+TGN Q Q +G + V ++ +
Sbjct: 431 ------KNDDFALDVCVKTS-TITRGLTYSLATGNWGDQKKAH-QSRAGVSQVLNRLTYT 482
Query: 494 RFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFFCPVHTPDGSPCGLLNHLSHKCKISTE 553
+SH R + + K R+L WG CP TP+G GL+ +L+ IS
Sbjct: 483 ATLSHLRRAN-SPIGREGKLAKPRQLHNTQWGMVCPAETPEGQAVGLVKNLALMAYIS-- 539
Query: 554 QSDVSKIPS-ILYSLGVTPAAHVIAAGPSMCC----VQLDGKIIGWCSHEQGKVVADTLR 608
V +P IL L ++ PS + ++G +G H + + TL+
Sbjct: 540 ---VGSLPEPILEFLEEWSMENLEEVSPSAIADATKIFVNGAWVG--IHREPDQLMTTLK 594
Query: 609 FWKVEGKTPGLPVDLEVGYVPPTTSGQYPGLFLFGGHSRMMRPV------------RYLP 656
+ + +D+ V V + + ++ R+ RP+ R++
Sbjct: 595 KLRRQ-------MDIIVSEVSMVRDIRDREIRIYTDAGRVCRPLLIVENQKLALKKRHID 647
Query: 657 LDKE-----------DIVG--------PFEQVYMNIAVTPEEIEN----NVHSHVEFSPT 693
KE D+VG E+ IA+ PE++ + + H+H E P
Sbjct: 648 QLKEAADEANKYTWSDLVGGGVVELIDSMEEETSMIAMMPEDLRSGGYCDTHTHCEIHPA 707
Query: 694 NILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQTGQTPIVKA 753
IL + A++ PF D NQSPRN YQ MGKQ MG R D + L Q P+V
Sbjct: 708 MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTT 767
Query: 754 NLYDDYGMDNFPNGTNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYKVEKVN-LSM 812
+ + P G NA+VA++SY+GY+ +D++I+N SA +RG Y+ + N ++
Sbjct: 768 RSMEYLRFNELPAGINAIVAILSYSGYNQEDSVIMNNSAIDRGLFRSVFYRSYRDNEANL 827
Query: 813 NRSRGDPITQHFGFGTDEWPKEWLEKLDDDGLPLIGTYVEEGDPICAY------FDDTLN 866
+ + + I + +KLD+DG+ G V D I DD L+
Sbjct: 828 DNANEELIEKPTREKCSGMRHSLYDKLDEDGIISPGMRVSGDDVIIGKTVALPDIDDDLD 887
Query: 867 -------KTKIKTY-HSSEPAYIEEVKL-IGDESSKFQELQAITIKYRIRRTPQIGDKFS 917
K T+ SSE +++V L + + +KF + I+ R R PQIGDKF+
Sbjct: 888 ASGKKYPKRDASTFLRSSETGIVDQVMLSLNSDGNKF-----VKIRMRSVRLPQIGDKFA 942
Query: 918 SRHGQKGVCSRKWPTIDMPFSETGIQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGIA 977
SRHGQKG + DMPF+ G+ PD+IINPHA PSRMTIG +E L GK A G
Sbjct: 943 SRHGQKGTMGIMYRQEDMPFTAEGLTPDIIINPHAVPSRMTIGHLIECLQGKLSANKGEI 1002
Query: 978 QDSTPWTFNESDTPADYFGDQLAKAGYNYHGNEPMYSGATGEELRADIYIGVVYYQRLRH 1037
D+TP FN++ G L + GY+ GNE MY+G TG++L I+ G YYQRL+H
Sbjct: 1003 GDATP--FNDTVNVQKISG-LLCEYGYHLRGNEVMYNGHTGKKLTTQIFFGPTYYQRLKH 1059
Query: 1038 MVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQDRLLNCSDY 1097
MV+DK R+ GP+ + QP++GR R GG+R GEMERD I HG + L++RL SD
Sbjct: 1060 MVDDKIHSRARGPIQMMNRQPMEGRARDGGLRFGEMERDCQISHGATQFLRERLFEVSDP 1119
Query: 1098 TQTAVCRDCGAILTTQSSVPKIGSISTVRCRRCALKFDEAKRLITKYESGSEPVHIADSE 1157
VC +CG I+ ++ C+ C K
Sbjct: 1120 YHVYVCNNCGLIVVANLRT------NSFECKACRNK------------------------ 1149
Query: 1158 IWEDGQGNKFVGGGNTTTVAIPFVLKYLDSELAAMGIRLRYNVEPK 1203
+ V IP+ K L EL +M I R V+P+
Sbjct: 1150 -------------TQVSAVRIPYACKLLFQELMSMSIAPRLMVKPR 1182
>CE00690 [K] KOG0215 RNA polymerase III second largest subunit
Length = 1207
Score = 383 bits (983), Expect = e-105
Identities = 323/1102 (29%), Positives = 519/1102 (46%), Gaps = 139/1102 (12%)
Query: 84 SDTNPNYLGNKLSLSIEQVSISKPTSNDGVSSAVERKVFPSESRQRLTSYRGKILLKLKW 143
SD NPN+ L + I KP+S +G++ + K+ P E R R +Y I + +++
Sbjct: 122 SDANPNFY-----LKYLDIRIGKPSSEEGLNMTHD-KITPQECRLRDMTYSAPISVDIEY 175
Query: 144 SVNDGEETFTEVRDCGGLPIMLQSNRCHLNKMSPYELVEHREESDEFGGYFIVNGIEKLI 203
+ + F + G +PIML+S++C L ++ EL +E + GGYF+V G EK+I
Sbjct: 176 T-RGNQRVFKKDLIIGRMPIMLRSSKCILRDLAEEELARVQECPYDPGGYFVVKGSEKVI 234
Query: 204 RMLIVQRRNHPMAIIRPSFANRGASYSQYGIQIRSVRPDQTSQTNVLHYLNDGQVTFRFS 263
+ +N M R +S + ++ S ++ S+T V + G+ + R +
Sbjct: 235 LIQEQLSKNRIMV-------GRNSS-KELQCEVLSSTSERKSKTYVT--MKKGKYSVRHN 284
Query: 264 WRKNEYLIPVVMILRALCDTNDREIFDHVVGGDTSNSFLTDRLELLLRGFKKRYPTLQNR 323
++ +PV +I +A+ +D +I + + S LE + + +
Sbjct: 285 QLTDD--VPVSIIFKAMGVESDFDIVSTIGHEEKYVSAFAQTLEESINA------GVYTQ 336
Query: 324 KQTLQYLGDKFRV----VFQASPDMTDLQV--------GQELLNRIVLVHLG---ENNKD 368
+Q L Y+ K + F + P T + V + L+ ++ H+ N K
Sbjct: 337 QQALAYVTSKVKARKFTPFGSLPG-TSVSVLTPPKEHEAVDFLSNSMITHIACPDGNFKM 395
Query: 369 KFNMLLFMIRKLYSLVAGECSPDNPDAAQHQEILLGGFLYGMIVKEKIEEYLQNIRLQIQ 428
K L M R+L GE D+ D ++ + L G L ++ ++ + + ++
Sbjct: 396 KAIYLGLMTRRLIQTELGENGLDDRDFYGNKRLELAGSLLSLLFEDVFKRFNSELKRIAD 455
Query: 429 TDINRGLAINFKDQKYMNKVLMRVNENIGSKLQYFLSTGNLVSQSGLDLQQVSGYTVVAE 488
+ + +A K+M + + I + + +STGN + + ++++ G T V
Sbjct: 456 NALMKTMAAPLDIVKHMRQ------DMITNTIVNAMSTGNWIIKR-FRMERL-GVTQVLS 507
Query: 489 KINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFFCPVHTPDGSPCGLLNHLSHKC 548
++++ + ++ +F K + R L P WG CP TP+G CGL+ +L+
Sbjct: 508 RLSYISALGMMTRIN-STFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALIS 566
Query: 549 KISTEQSDVSKIPSILYSLGVTPAAHVIAAG---PSMCCVQLDGKIIGWCSHEQGKVVAD 605
I+T+ SD + +L + GV +V + P + L+G +IG + V A
Sbjct: 567 HITTD-SDEKPVLRLLLNSGVEDLHNVHFSHVNKPENTLIFLNGVLIGTAVDPERVVKA- 624
Query: 606 TLRFWKVEGKTPGLPVDLEVGYVPPTTSGQYPGLFLFGGHSRMMRP-------------- 651
+R + G L +V + S +F+ R+ RP
Sbjct: 625 -VRDLRRSG--------LLSEFVSVSRSLTNRSVFISSDGGRLCRPYIIVKNGTPMLTQA 675
Query: 652 -VRYLPLDK---EDIV--GPFEQVYMN------IAVTPEEIENNVHSHVEFSPTNILSIL 699
V+ L K ED V G E + +N IAV EI +H+E P +L +
Sbjct: 676 HVQELKEGKMIFEDFVDDGIVEYLDVNEMNDALIAVYGREIGPET-THLEIEPFTLLGVC 734
Query: 700 ANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQTGQTPIVKANLYDDY 759
A L P+ NQSPRN YQC MGKQ MGT R D+ +Y L Q P+VK+ +
Sbjct: 735 AGLIPYPHHNQSPRNTYQCAMGKQAMGTIAYNQQKRIDSIMYLLCYPQRPLVKSKTIELT 794
Query: 760 GMDNFPNGTNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYKVEK------VNLSMN 813
+ P G N ++AV+SY+GYD++DA+++NK++ +RG+G +YK K N + +
Sbjct: 795 NFEKLPAGANGIIAVMSYSGYDIEDALVLNKASLDRGYGRCLVYKHVKGTAKKYPNQTFD 854
Query: 814 RSRG---DPITQHFGFGTDEWPKEWLEKLDDDGLPLIGTYVE---------------EGD 855
R G DP T+ P + LD +G+ G + E
Sbjct: 855 RLLGPALDPNTRK--------PIFKHKNLDQEGIVFAGARIMPKQTIINKHMPVVSGESG 906
Query: 856 PICAYFDDTLN--------KTKIKTYHSSEPAYIEEVKLIGDESSKFQELQAITIKYRIR 907
P + +T+ K TY + P+Y E V L +E E + R
Sbjct: 907 PGASASANTIGIAGRQVDYKDVSITYKTPTPSYAERVLLTYNED----EAHLFKVLLRQT 962
Query: 908 RTPQIGDKFSSRHGQKGVCSRKWPTIDMPFSETGIQPDVIINPHAFPSRMTIGMFVESLA 967
R P++GDKFSSRHGQKGVC DMPF++ G+ PD+I+NPH +PSRMT+G +E L+
Sbjct: 963 RRPELGDKFSSRHGQKGVCGLIAQQEDMPFNDLGMVPDMIMNPHGYPSRMTVGKLMELLS 1022
Query: 968 GKAGALHGIAQDSTPWTFNESDTPADYFGDQLAKAGYNYHGNEPMYSGATGEELRADIYI 1027
GKAG ++G T + ++ + +LA GYNY G + + SG TG+ L A IY
Sbjct: 1023 GKAGVVNGTYHYGTAFGGDQVKDVCE----ELAACGYNYMGKDMLTSGITGQPLSAYIYF 1078
Query: 1028 GVVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFLL 1087
G +YYQ+L+HMV DK R+ GP +LT QP +GR R GG+R+GEMERD LI +G S LL
Sbjct: 1079 GPIYYQKLKHMVLDKMHARARGPRAALTRQPTEGRSREGGLRLGEMERDCLIAYGASMLL 1138
Query: 1088 QDRLLNCSDYTQTAVCRDCGAI 1109
+RL+ SD + VC CG I
Sbjct: 1139 IERLMVSSDEFKVDVCTGCGVI 1160
>At5g45140 [K] KOG0215 RNA polymerase III second largest subunit
Length = 1194
Score = 382 bits (981), Expect = e-105
Identities = 307/1011 (30%), Positives = 486/1011 (47%), Gaps = 114/1011 (11%)
Query: 159 GGLPIMLQSNRCHLNKMSPYELVEHREESDEFGGYFIVNGIEKLIRMLIVQRRNHPMAII 218
G +PIML+S RC L+ EL E + GGYFI+ G EK++ ++ Q + + I
Sbjct: 164 GRMPIMLRSCRCVLHGKDEEELARLGECPLDPGGYFIIKGTEKVL-LIQEQLSKNRIIID 222
Query: 219 RPSFANRGASYSQYGIQIRSVRPDQTSQTNVLHYLNDGQVTFRFSWRKNEYLIPVVMILR 278
N AS + +S Q + + +L+ RF + IP++++L+
Sbjct: 223 SDKKGNINASVTSSTEMTKSKTVIQMEKEKIYLFLH------RFVKK-----IPIIIVLK 271
Query: 279 ALCDTNDREIFDHVVGGDT--SNSFLTDRLELLLRGFKKRYPTLQNRKQTLQYLGDKFRV 336
A+ +D+EI +VG D S S L E + G + +KQ L YL K +
Sbjct: 272 AMGMESDQEIVQ-MVGRDPRFSASLLPSIEECVSEG-------VNTQKQALDYLEAKVKK 323
Query: 337 VFQASPDMTDLQVGQELLNRIVLVHL---GENNKDKFNMLLFMIRKLYSLVAGECSPDNP 393
+ +P D + +L + L H+ N + K + M+R++ + + + D+
Sbjct: 324 ISYGTPPEKDGRA-LSILRDLFLAHVPVPDNNFRQKCFYVGVMLRRMIEAMLNKDAMDDK 382
Query: 394 DAAQHQEILLGGFLYGMIVKEKIEEYLQNIRLQIQTDINRGL-AINFKDQKYMNKVLMRV 452
D ++ + L G L ++ ++ + L + +N+ + A F + +NK R
Sbjct: 383 DYVGNKRLELSGQLISLLFEDLFKTMLSEAIKNVDHILNKPIRASRFDFSQCLNKD-SRY 441
Query: 453 NENIGSKLQYFLSTGNLVSQSGLDLQQV----SGYTVVAEKINFYRFISHFRMVHRGSFF 508
+ ++G L+ LSTGN D+++ G T V +++F + + F
Sbjct: 442 SISLG--LERTLSTGNF------DIKRFRMHRKGMTQVLTRLSFIGSMGFITKISP-QFE 492
Query: 509 AQLKTTTVRKLLPESWGFFCPVHTPDGSPCGLLNHLSHKCKISTEQSDVSKIPSILYSLG 568
K + R L P WG CP TP+G CGL+ +L+ ++T++ + + ++ Y LG
Sbjct: 493 KSRKVSGPRSLQPSQWGMLCPCDTPEGESCGLVKNLALMTHVTTDEEE-GPLVAMCYKLG 551
Query: 569 VTPAAHVIAAG---PSMCCVQLDGKIIGWCSHEQGKVVADTLRFWKVEGKTPGLPVDLEV 625
VT + A P V L+G I+G H + + A++LR + GK +
Sbjct: 552 VTDLEVLSAEELHTPDSFLVILNGLILG--KHSRPQYFANSLRRLRRAGK---------I 600
Query: 626 G-YVPPTTSGQYPGLFLFGGHSRMMRPV-----------RYLPLDKEDIVGPFEQVYMNI 673
G +V T+ + +++ R+ RP+ ++ + +D V F+ +
Sbjct: 601 GEFVSVFTNEKQHCVYVASDVGRVCRPLVIADKGISRVKQHHMKELQDGVRTFDDFIRDG 660
Query: 674 AVTPEEI--ENNV------------HSHVEFSPTNILSILANLTPFSDFNQSPRNMYQCQ 719
+ ++ ENN +H+E P IL ++A L P+ NQSPRN YQC
Sbjct: 661 LIEYLDVNEENNALVCLRAEAAKADTTHIEIEPFTILGVVAGLIPYPHHNQSPRNTYQCA 720
Query: 720 MGKQTMGTPGVALCHRSDNKLYRLQTGQTPIVKANLYDDYGMDNFPNGTNAVVAVISYTG 779
MGKQ MG +R D LY L Q P++ + G D G NA VAV+S++G
Sbjct: 721 MGKQAMGNIAYNQLNRMDTLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSFSG 780
Query: 780 YDMDDAMIINKSADERGFGYG-TMYKVEKVNLSMNRSRGDPITQHFGFGTDEWPKEWLEK 838
YD++DA+++NKS+ +RGFG M K+ ++ + D I G D E ++
Sbjct: 781 YDIEDAIVMNKSSLDRGFGRCIVMKKIVAMSQKYDNCTADRILIPQRTGPDA---EKMQI 837
Query: 839 LDDDGLPLIGTYVEEGD-------PI--CAYFDDTLNKTKIKTYHS------SEPAYIEE 883
LDDDGL G + D P+ F L+ ++ + E ++
Sbjct: 838 LDDDGLATPGEIIRPNDIYINKQVPVDTVTKFTSALSDSQYRPAREYFKGPEGETQVVDR 897
Query: 884 VKLIGDESSKFQELQAITIKYRIRRT--PQIGDKFSSRHGQKGVCSRKWPTIDMPFSETG 941
V L D+ + + IKY IR T P++GDKFSSRHGQKGVC D PFSE G
Sbjct: 898 VALCSDKKGQ------LCIKYIIRHTRRPELGDKFSSRHGQKGVCGIIIQQEDFPFSELG 951
Query: 942 IQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWTFNESDTPADY---FGDQ 998
I PD+I+NPH FPSRMT+G +E L KAG G + F E AD
Sbjct: 952 ICPDLIMNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGS--AFGERSGHADKVETISAT 1009
Query: 999 LAKAGYNYHGNEPMYSGATGEELRADIYIGVVYYQRLRHMVNDKFQVRSTGPVNSLTMQP 1058
L + G++Y G + +YSG +GE + A I++G +YYQ+L+HMV DK R +GP +T QP
Sbjct: 1010 LVEKGFSYSGKDLLYSGISGEPVEAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMMTRQP 1069
Query: 1059 VKGRKRHGGIRVGEMERDALIGHGTSFLLQDRLLNCSDYTQTAVCRDCGAI 1109
+G+ ++GG+RVGEMERD LI +G S L+ +RL+ SD + VCR CG +
Sbjct: 1070 TEGKSKNGGLRVGEMERDCLIAYGASMLIYERLMISSDPFEVQVCRACGLL 1120
>7299847 [K] KOG0214 RNA polymerase II second largest subunit
Length = 1176
Score = 380 bits (975), Expect = e-105
Identities = 328/1104 (29%), Positives = 519/1104 (46%), Gaps = 148/1104 (13%)
Query: 94 KLSLSIEQVSISKPT--SNDGVSSAVERKVFPSESRQRLTSYRGKILLKLKWSVN----D 147
+ SL EQ+ +SKPT DG S + P+E+R R +Y + + + + N D
Sbjct: 84 RFSLKFEQIYLSKPTHWEKDGSPSPM----MPNEARLRNLTYSAPLYVDITKTKNVEGLD 139
Query: 148 GEETFTEVRDCGGLPIMLQSNRCHLNKMSPYELVEHREESDEFGGYFIVNGIEKLIRMLI 207
ET + G +PIML+S C L++++ +L E E + GGYFI+NG EK+ LI
Sbjct: 140 PVETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKV---LI 196
Query: 208 VQRRNHPMAIIRPSFANRGASYSQYGIQIRSV-----RPDQTSQTNVLHYLNDG------ 256
Q + + F+ + Y+ + +IRS RP T N++ +
Sbjct: 197 AQEKMATNTVY--VFSMKDGKYA-FKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKSAI 253
Query: 257 --QVTFRFSWRKNEYLIPVVMILRALCDTNDREIFDHVVGGDTSNSFLTDRLELLLRGFK 314
++ + K E IP++++ RAL DR+I +H++ + +E++
Sbjct: 254 GQRIIAILPYIKQE--IPIMIVFRALGFVADRDILEHIIYDFDD----PEMMEMVKPSLD 307
Query: 315 KRYPTLQNRKQTLQYLGDKFRVVFQASPDMTD---LQVGQELLNRIVLVHLGENN---KD 368
+ + +Q + L ++G + A P +T ++ +E+L + +L H+G ++
Sbjct: 308 EAF-VVQEQNVALNFIGAR-----GARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETK 361
Query: 369 KFNMLLFMIRKLYSLVAGECSPDNPDAAQHQEILLGGFLYGMIVKEKIEEYLQNIRLQIQ 428
K L +M+ +L G D+ D ++ + L G L + + + ++ +R+ Q
Sbjct: 362 KAYFLGYMVHRLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQ 421
Query: 429 TDINRGLAINFKDQKYMNKVLMRVNENIGSK-LQYFLSTGNLVSQSGLDLQQVSGYTVVA 487
I+RG N + + + NI + L+Y L+TGN Q Q +G + V
Sbjct: 422 KFIDRGKDFNLE---------LAIKTNIITDGLRYSLATGNWGDQKKAH-QARAGVSQVL 471
Query: 488 EKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFFCPVHTPDGSPCGLLNHLSHK 547
++ F +SH R V+ K R+L WG CP TP+G+ GL+ +L+
Sbjct: 472 NRLTFASTLSHLRRVN-SPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALM 530
Query: 548 CKISTEQSDVSKIPS-ILYSLGVTPAAHVIAAGPSMCC----VQLDGKIIGWCSHEQGKV 602
IS V PS IL L ++ PS + ++G +G H +
Sbjct: 531 AYIS-----VGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVG--IHRDPEQ 583
Query: 603 VADTLRFWKVEGKTPGLPVDLEVGYVPPTTSGQYPGLFLFGGHSRMMRPV---------- 652
+ TLR + + +D+ V V + + ++ R+ RP+
Sbjct: 584 LMATLRKLRRQ-------MDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLL 636
Query: 653 --RYLPLDKE-----------------DIVGPFEQVYMNIAVTPEEIENN-------VHS 686
++ + KE + + E+ + IA++P +++ + ++
Sbjct: 637 KKTHVEMLKERDYNNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYT 696
Query: 687 HVEFSPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQTG 746
H E P IL + A++ PF D NQSPRN YQ MGKQ MG R D + L
Sbjct: 697 HCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYP 756
Query: 747 QTPIVKANLYDDYGMDNFPNGTNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYKVE 806
P+V + P G N++VA++ YTGY+ +D++I+N SA ERGF Y+
Sbjct: 757 MKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSY 816
Query: 807 KVNLSMNRSRGDPITQHFGF-----GTDEWPKE-WLEKLDDDGLPLIGTYVEEGDPICAY 860
K S N+ GD Q F GT + + +KLDDDG+ G V D +
Sbjct: 817 KD--SENKRVGD---QEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVIGK 871
Query: 861 F------DDTLN-------KTKIKTY-HSSEPAYIEEVKL-IGDESSKFQELQAITIKYR 905
DD L+ K T+ +SE +++V L + E KF + I+ R
Sbjct: 872 TITLPENDDELDSNTKRFSKRDASTFLRNSETGIVDQVMLTLNSEGYKFCK-----IRVR 926
Query: 906 IRRTPQIGDKFSSRHGQKGVCSRKWPTIDMPFSETGIQPDVIINPHAFPSRMTIGMFVES 965
R PQIGDKF+SRHGQKG C ++ DM F+ G+ PD+IINPHA PSRMTIG +E
Sbjct: 927 SVRIPQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHLIEC 986
Query: 966 LAGKAGALHGIAQDSTPWTFNESDTPADYFGDQLAKAGYNYHGNEPMYSGATGEELRADI 1025
L GK G+ G D+TP FN++ L + GY+ GNE MY+G TG ++ A +
Sbjct: 987 LQGKLGSNKGEIGDATP--FNDA-VNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQV 1043
Query: 1026 YIGVVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSF 1085
++G YYQRL+HMV+DK R+ GPV L QP++GR R GG+R GEMERD I HG +
Sbjct: 1044 FLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQ 1103
Query: 1086 LLQDRLLNCSDYTQTAVCRDCGAI 1109
L++RL SD + +C CG I
Sbjct: 1104 FLRERLFEVSDPYRVHICNFCGLI 1127
>YOR151c [K] KOG0214 RNA polymerase II second largest subunit
Length = 1224
Score = 363 bits (933), Expect = e-100
Identities = 330/1170 (28%), Positives = 505/1170 (42%), Gaps = 178/1170 (15%)
Query: 86 TNPNYLGNKLSLSIEQVSISKPTSNDGVSSAVERKVFPSESRQRLTSYRGKILLKLKWSV 145
T + + K +S ++ ++KP N+ S V ++P E+R R +Y + + +K
Sbjct: 79 TESDNISRKYEISFGKIYVTKPMVNE--SDGVTHALYPQEARLRNLTYSSGLFVDVKKRT 136
Query: 146 NDG--------------EETFTEVRD----CGGLPIMLQSNRCHLNKMSPYELVEHREES 187
+ EE+ + G LPIML+S C+L++ + +L + +E
Sbjct: 137 YEAIDVPGRELKYELIAEESEDDSESGKVFIGRLPIMLRSKNCYLSEATESDLYKLKECP 196
Query: 188 DEFGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFANRGASYSQYGIQIRSV-----RPD 242
+ GGYFI+NG EK+ LI Q R+ I F S + +IRS R
Sbjct: 197 FDMGGYFIINGSEKV---LIAQERS--AGNIVQVFKKAAPSPISHVAEIRSALEKGSRFI 251
Query: 243 QTSQTNVLHYLNDGQVTFRFSWRKNEYLIPVVMILRALCDTNDREIFDHVVGGDTSNSFL 302
T Q + T + + + IP+V+I RAL D EI +H+ L
Sbjct: 252 STLQVKLYGREGSSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQML 311
Query: 303 TDRLELLLRGFKKRYPTLQNRKQTLQYLGDKFRVVFQASPDMTDLQVGQELLNRIVLVHL 362
+ GF +Q+R+ L ++G + + +Q +++L + L H+
Sbjct: 312 EMLKPCVEDGF-----VIQDRETALDFIGRRGTAL--GIKKEKRIQYAKDILQKEFLPHI 364
Query: 363 ----GENNKDKFNMLLFMIRKLYSLVAGECSPDNPDAAQHQEILLGGFLYGMIVKEKIEE 418
G ++ F L +MI +L D+ D + + L G L + K ++
Sbjct: 365 TQLEGFESRKAF-FLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFKK 423
Query: 419 YLQNIRLQIQT------DINRGLAINFKDQKYMNKVLMRVNENIGSKLQYFLSTGNLVSQ 472
++I +Q D N LAIN K I S L+Y L+TGN Q
Sbjct: 424 LTKDIFRYMQRTVEEAHDFNMKLAINAK--------------TITSGLKYALATGNWGEQ 469
Query: 473 SGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFFCPVHT 532
+ +G + V + + +SH R + K R+L WG CP T
Sbjct: 470 KKA-MSSRAGVSQVLNRYTYSSTLSHLRRTNT-PIGRDGKLAKPRQLHNTHWGLVCPAET 527
Query: 533 PDGSPCGLLNHLSHKCKISTEQSDVSKIPSILYSLGVTPAA-HVIAAGPSMCCVQLDGKI 591
P+G CGL+ +LS IS +D I + L G+ P +V P V ++G
Sbjct: 528 PEGQACGLVKNLSLMSCISVG-TDPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVW 586
Query: 592 IGWCSHEQGKVVADTLRFWKVEGKTPGLPVDLEVGYVPPTTSGQYPGLFLFGGHSRMMRP 651
G H + +TLR + +G ++ EV + + L +F R+ RP
Sbjct: 587 HG--VHRNPARLMETLRTLRRKGD-----INPEVSMIRDIREKE---LKIFTDAGRVYRP 636
Query: 652 V----------------------RYLPLDKEDIVGPFEQV---------------YMN-- 672
+ + + + +DI G FE V Y++
Sbjct: 637 LFIVEDDESLGHKELKVRKGHIAKLMATEYQDIEGGFEDVEEYTWSSLLNEGLVEYIDAE 696
Query: 673 ------IAVTPEEIEN-----------------------NVHSHVEFSPTNILSILANLT 703
IA+ PE++E +H E P+ IL + A++
Sbjct: 697 EEESILIAMQPEDLEPAEANEENDLDVDPAKRIRVSHHATTFTHCEIHPSMILGVAASII 756
Query: 704 PFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQTGQTPIVKANLYDDYGMDN 763
PF D NQSPRN YQ MGKQ MG R D L Q P+ +
Sbjct: 757 PFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRE 816
Query: 764 FPNGTNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYKVEKVNLSMNRSRGDPITQH 823
P G NA+VA+ Y+GY+ +D+MI+N+S+ +RG ++ + + G IT+
Sbjct: 817 LPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSY---MDQEKKYGMSITET 873
Query: 824 FG----FGTDEWPKEWLEKLDDDGLPLIGTYVEEGDPICA----YFDDTLNKTKIKTYHS 875
F T +KLDDDGL G V D I D + YHS
Sbjct: 874 FEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVIIGKTTPISPDEEELGQRTAYHS 933
Query: 876 ----------SEPAYIEEVKLIGDESSKFQELQAITIKYRIRRTPQIGDKFSSRHGQKGV 925
+E +++V + ++ L+ + ++ R + PQIGDKF+SRHGQKG
Sbjct: 934 KRDASTPLRSTENGIVDQVLVTTNQDG----LKFVKVRVRTTKIPQIGDKFASRHGQKGT 989
Query: 926 CSRKWPTIDMPFSETGIQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWTF 985
+ DMPF+ GI PD+IINPHA PSRMT+ +E L K AL G D++P+T
Sbjct: 990 IGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALSGNEGDASPFT- 1048
Query: 986 NESDTPADYFGDQLAKAGYNYHGNEPMYSGATGEELRADIYIGVVYYQRLRHMVNDKFQV 1045
D + L + GY G E MY+G TG++L A I+ G YYQRLRHMV+DK
Sbjct: 1049 ---DITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHA 1105
Query: 1046 RSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQDRLLNCSDYTQTAVCRD 1105
R+ GP+ LT QPV+GR R GG+R GEMERD +I HG + L++RL+ SD + +C
Sbjct: 1106 RARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKERLMEASDAFRVHICGI 1165
Query: 1106 CGAILTTQSSVPKIGSISTVRCRRCALKFD 1135
CG + + + K+ + C+ C K D
Sbjct: 1166 CGLM----TVIAKLNH-NQFECKGCDNKID 1190
>ECU11g0370 [K] KOG0215 RNA polymerase III second largest subunit
Length = 1110
Score = 313 bits (802), Expect = 1e-84
Identities = 178/438 (40%), Positives = 245/438 (55%), Gaps = 20/438 (4%)
Query: 673 IAVTPEEIENNVHSHVEFSPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVAL 732
+A+ PE+I +H+E S IL +A L PF NQSPRN YQC MGKQ +G + +
Sbjct: 650 VALKPEDIGEET-THLEISEFAILGYVAGLVPFPHHNQSPRNTYQCAMGKQAIGHISLNV 708
Query: 733 CHRSDNKLYRLQTGQTPIVKANLYDDYGMDNFPNGTNAVVAVISYTGYDMDDAMIINKSA 792
R D+ + +L P+V + D + P G NA+VAV+SY+GYD++DA+++NK++
Sbjct: 709 KKRFDSVILQLTYTHRPMVSTKILDLINYNEIPAGQNAMVAVMSYSGYDIEDALVLNKTS 768
Query: 793 DERGFGYGTMYKVEKVNLSMNRSRGDPITQHFGFGTDEWPKEWLEKLDDDGLPLIGTYVE 852
ERG +YK L + + G WP LD+DGL G V
Sbjct: 769 VERGLFRVEVYKTTTTLLKKHSN---------GMSDVLWPNPKESVLDEDGLGKPGKMVR 819
Query: 853 EGDPICAYFDDTLNKTKIK-TYHSSEPAYIEEVKLIGDESSKFQELQAITIKYRIRRTPQ 911
+G K H +PAYI+++ + +K Q+ I R R P+
Sbjct: 820 DGTVYVNKMSPVDGTYKFTGKVHRGDPAYIDKILI-----TKSQDQVLIKTMLRQTRVPE 874
Query: 912 IGDKFSSRHGQKGVCSRKWPTIDMPFSETGIQPDVIINPHAFPSRMTIGMFVESLAGKAG 971
IGDKFSSRHGQKGV DMPF++ GI PD+I+NPH FPSRMT+G VE ++GKAG
Sbjct: 875 IGDKFSSRHGQKGVVGLLVRQEDMPFNDQGIVPDIIMNPHGFPSRMTVGKIVELISGKAG 934
Query: 972 ALHGIAQDSTPWTFNESDTPADYFGDQLAKAGYNYHGNEPMYSGATGEELRADIYIGVVY 1031
L G DST + N + + L K G++Y G + SG TG L A I+ G V+
Sbjct: 935 VLEGQILDSTAFKENSVEQTCEL----LIKHGFSYSGKDCFTSGTTGAPLAAYIFFGPVF 990
Query: 1032 YQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQDRL 1091
YQRL+HMV DK +R+ GP LT QP +GR + GG+++GEMERD LIG+G S L+ +RL
Sbjct: 991 YQRLKHMVADKIHMRARGPRAILTRQPTEGRSKDGGLKLGEMERDCLIGYGASSLITERL 1050
Query: 1092 LNCSDYTQTAVCRDCGAI 1109
+ SD + VCR CG +
Sbjct: 1051 MTSSDVFEAYVCRSCGVL 1068
Score = 102 bits (255), Expect = 3e-21
Identities = 126/495 (25%), Positives = 217/495 (43%), Gaps = 53/495 (10%)
Query: 117 VERKVFPSESRQRLTSYRGKILLKLKWSVNDGEETFTEVRDC-GGLPIMLQSNRCHLNKM 175
V VFP E R R +Y I + +++ N + + C G +P+ML+S+RCHL +
Sbjct: 72 VNYNVFPIECRLRDITYSANIYVDIEYVRN--RQIIVKRDVCIGKMPVMLRSSRCHLRRE 129
Query: 176 S--PYE--------LVEHREESDEFGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFANR 225
+ P E + E +E + GGYFIV GIE+++ LI ++ + II
Sbjct: 130 TKGPMEGRKTKDRRIRESQECPLDVGGYFIVRGIERVV--LIQEQLSKNRIIIESGPKGL 187
Query: 226 GASYSQYGIQIRSVRPDQTSQTNVLHYLNDGQVTFRFSWRKNEYLIPVVMILRALCDTND 285
AS + S + S+T+V D + S E +PVV++++AL D
Sbjct: 188 FAS-------VTSSTDEHKSKTSVT--TRDDCYYLKNSMFSEE--VPVVIMMKALGLVQD 236
Query: 286 REIFDHVVGGDTSNSFLTDRLELLLRGFKKRYPTLQNRKQTLQYLGDKFRVVFQASPDMT 345
RE+ + VG + + E + +G + R+Q L Y+ ++ P+
Sbjct: 237 REVAE-CVGKEYFEIMVPSFGECMSKG-------IFTREQALLYISSYIKL----KPEDN 284
Query: 346 DLQVGQELLNRIVLVHL---GENNKDKFNMLLFMIRKLYSLVAGECSPDNPDAAQHQEIL 402
++ +L+ VL ++ G + + K + M+R+L D+ D ++
Sbjct: 285 RIEEVLTVLSEKVLPNVQIEGCDLRKKGIYIALMVRRLAQTKLNILREDDKDFVGNKRFE 344
Query: 403 LGGFLYGMIVKEKIEEYLQNIRLQIQTDINRGLAINFKDQKYMNKVLMRVNEN-IGSKLQ 461
L G L ++ E+ + +++ I++ L+ + Q++ + + N I S L
Sbjct: 345 LAGQLLSIL----FEDTFKRFNFELKKSIDKILSKRSRAQEFDALTFLNLQANMITSTLA 400
Query: 462 YFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLP 521
+STGN + + SG T V + ++ + ++ F K + R L
Sbjct: 401 RAISTGNWNLKRFR--MERSGVTHVLSRHSYISALGMMTKIN-SHFEKTRKVSGPRSLHT 457
Query: 522 ESWGFFCPVHTPDGSPCGLLNHLSHKCKISTEQSDVSKIPSILYSLGVTPAAHVIAA--- 578
SWG CPV TP+G CGL+ +L+ +I+T SD I +Y LGV V
Sbjct: 458 SSWGMLCPVDTPEGESCGLVKNLALLAEITT-NSDTKPILDTVYKLGVVDINSVYTREIH 516
Query: 579 GPSMCCVQLDGKIIG 593
M V L+G IIG
Sbjct: 517 QKDMFSVFLNGDIIG 531
>ECU10g0250 [K] KOG0214 RNA polymerase II second largest subunit
Length = 1141
Score = 289 bits (740), Expect = 2e-77
Identities = 181/484 (37%), Positives = 247/484 (50%), Gaps = 32/484 (6%)
Query: 652 VRYLPLDKEDIVGPFEQVYMNIAVTPEEIENNV-----HSHVEFSPTNILSILANLTPFS 706
+ +L +++E++ + MN + +E N+ ++H E P IL I A+ PF
Sbjct: 630 IEFLDVEEEEM----SMIAMNTKILADESRNSSDVSVSYTHCEIHPALILGICASTIPFP 685
Query: 707 DFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQTGQTPIVKANLYDDYGMDNFPN 766
D NQSPRN YQ MGKQ MG R D L Q P+V + P+
Sbjct: 686 DHNQSPRNTYQSAMGKQAMGIYATNFLLRMDTLSNILFYPQKPLVTTKSMEYLRFKELPS 745
Query: 767 GTNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYKVEKVNLSMNRSRGDPITQHFGF 826
G NA+VA+ Y+GY+ +D++I+N+SA +RG Y+ SM+R +
Sbjct: 746 GQNALVAIACYSGYNQEDSIIMNQSAIDRGLFRSFFYRTYTDQESMSRPGVNEEFCKPSR 805
Query: 827 GTDEWPKEW-LEKLDDDGLPLIGTYVEEGDPICAYFDDTLNKTK------IKTYHSS--- 876
G K KLDDDGL GT V D + L+ + + Y S
Sbjct: 806 GAVLRMKNLNYNKLDDDGLISPGTRVTGDDVLIGKITPILDPERSTKEAPVYVYKDSSTA 865
Query: 877 ----EPAYIEEVKLIGDESSKFQELQAITIKYRIRRTPQIGDKFSSRHGQKGVCSRKWPT 932
E ++ V + + KF + +K R R PQ+GDKF+SRH QKG
Sbjct: 866 MRRTETGIVDTVIVTNKDGYKFSK-----VKVRSGRIPQMGDKFASRHAQKGTIGITLRQ 920
Query: 933 IDMPFSETGIQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWTFNESDTPA 992
DMPF+ GI PD+IINPHA PSRMTIG +E L GK A+ G D+TP+ S
Sbjct: 921 EDMPFTSEGIVPDIIINPHAIPSRMTIGHLIECLLGKVSAMSGEEGDATPF----SGVTV 976
Query: 993 DYFGDQLAKAGYNYHGNEPMYSGATGEELRADIYIGVVYYQRLRHMVNDKFQVRSTGPVN 1052
D +L G+ G E MY+G TG +LRA ++ G YYQRL+HMV+DK R+ GP+
Sbjct: 977 DGISSRLKSYGFQQRGLEVMYNGMTGRKLRAQMFFGPTYYQRLKHMVDDKIHARARGPLQ 1036
Query: 1053 SLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQDRLLNCSDYTQTAVCRDCGAILTT 1112
LT QPV+GR R GG+R GEMERD +I HG S L++RL++ SD VC CG +
Sbjct: 1037 ILTRQPVEGRSRDGGLRFGEMERDCIISHGASAFLKERLMDVSDAYSCYVCDFCGLLAMG 1096
Query: 1113 QSSV 1116
S V
Sbjct: 1097 GSKV 1100
Score = 123 bits (309), Expect = 2e-27
Identities = 125/482 (25%), Positives = 223/482 (45%), Gaps = 56/482 (11%)
Query: 94 KLSLSIEQVSISKP---TSNDGVSSAVERKVFPSESRQRLTSYRGKILLKLKWSVNDGEE 150
++++ Q+ +SKP T +DG + V FP+E+R R +Y + + + +E
Sbjct: 64 RIAVRFGQIYVSKPPVYTESDGRTITV----FPNEARIRDLTYASPLFIDVT------KE 113
Query: 151 TFTEVR----------DCGGLPIMLQSNRCHLNKMSPYELVEHREESDEFGGYFIVNGIE 200
T +E+ G LP+ML+S+ C L + +L++ E + GGYFIVNG E
Sbjct: 114 TLSELGVVDKHKYSRVPFGSLPVMLRSSYCVLYGLGDKDLIDLGECPYDQGGYFIVNGSE 173
Query: 201 KLIRMLIVQRR--NHPMAIIRPSFANRGASYSQYGIQIRSVRPDQTSQ--TNVLHYLNDG 256
K+I + Q R ++ + + + + + A+Y+ Y +IRSV P+++S+ + + L
Sbjct: 174 KVI---VAQERMASNTVYVFKKA---QPATYTHYA-EIRSV-PEKSSRNPSTLSMKLCRS 225
Query: 257 QVTFRFSWRKNEYLIPVVMILRALCDTNDREIFDHVVGGDTSNSFLTDRLELLLRGFKKR 316
R S + +P+ ++ RAL +D+EI DH++ D F ELL ++
Sbjct: 226 PGVIRVSLPLVKQDVPLFVLYRALGFLSDKEIIDHILYEDDEEMF-----ELLKESIEEG 280
Query: 317 YPTLQNRKQTLQYLGDKFRVVFQASPDMTDLQVGQELLNRIVLVHLGEN---NKDKFNML 373
+Q++ L Y+G + + +P + + ++LL + VL H+G K +
Sbjct: 281 -TVVQDQNVALDYIGKRSAPI--GTPQEKRIVMAKDLLAKEVLPHIGTQEFCETKKAYFI 337
Query: 374 LFMIRKLYSLVAGECSPDNPDAAQHQEILLGGFLYGMIVKEKIEEYLQNIRLQIQTDINR 433
+++++L + G +PD+ D + + L G L + + ++ + +Q I
Sbjct: 338 GYIVQRLLLVALGRRNPDDRDHYGKKRMDLSGPLLASLFRTLFKKLCVDTTRHMQKCIEN 397
Query: 434 GLAINFKDQKYMNKVLMRVNENIGSKLQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFY 493
G + N L I +Y L+TGN Q+ +Q +G V + NF
Sbjct: 398 G--------REFNIALGLKASIITQGFRYALATGNWGDQAKA-MQTRAGVAQVLNRYNFV 448
Query: 494 RFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFFCPVHTPDGSPCGLLNHLSHKCKISTE 553
+SH R V+ + K R+L WG CP TP+G CGL+ +LS IS
Sbjct: 449 STLSHLRRVNT-PIEKEGKLAAPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMAYISVG 507
Query: 554 QS 555
S
Sbjct: 508 SS 509
>At3g18090 [K] KOG0214 RNA polymerase II second largest subunit
Length = 1038
Score = 273 bits (699), Expect = 9e-73
Identities = 279/1058 (26%), Positives = 463/1058 (43%), Gaps = 88/1058 (8%)
Query: 129 RLTSYRGKILLKLKWSVNDGEETFTE--VRDC-------GGLPIMLQSNRCHLNKMSPYE 179
RL + +K+ V G++ + E + D G +P+M++S C ++
Sbjct: 4 RLQNMTYSARIKVNAQVETGQDEYVEKEILDVKKQDILIGSIPVMVKSVLCKTSEKGKEN 63
Query: 180 LVEHREESDEFGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFANRGASYSQYGIQIRSV 239
+ D+ GGYF++ G EK+ I Q + M R +N S + + RS
Sbjct: 64 CKKGNCAFDQ-GGYFVIKGAEKVF---IAQEQ---MCTKRLWISN-----SPWTVSFRS- 110
Query: 240 RPDQTSQTNVLHYLNDGQVTFRFSWRKNEYL-------IPVVMILRALCDTNDREIFDHV 292
+T + + L++ + + + IPV ++ AL ++D+E D +
Sbjct: 111 ---ETKRNRFIVRLSENEKAEDYKIMEKVLTVYFLSTEIPVWLLFFALGVSSDKEAMD-L 166
Query: 293 VGGDTSNSFLTDRLELLLRGFKKRYPTLQNRKQTLQYLGDKFRVV-FQASPDMTDLQVGQ 351
+ D ++ +T+ L + + L Y+ + + F + + D
Sbjct: 167 IAFDGDDASITNSLIASIHEADAVCEAFRCGNNALTYVEHQIKSTKFPPAESVDDCL--- 223
Query: 352 ELLNRIVLVHLGENNKDKFNMLLFMIRKLYSLVAGECSPDNPDAAQHQEILLGGFLYGMI 411
R+ L + K K L +M++ L S AG+ +N D+ +++ I L G L
Sbjct: 224 ----RLYLFPCLQGLKKKARFLGYMVKCLLSAYAGKRKCENRDSFRNKRIELAGEL---- 275
Query: 412 VKEKIEEYLQNIRLQIQTDINRGLAINFKDQKYMNKVLMRVNENIGSKLQYFLSTGNLVS 471
++ +I +L + R ++ + + L+ + D K + L I + L STG S
Sbjct: 276 LEREIRVHLAHARRKMTRAMQKQLSGD-GDLKPIEHYLDA--SVITNGLNRAFSTGAW-S 331
Query: 472 QSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFFCPVH 531
+++VSG + N + + R + + K R P WG C +
Sbjct: 332 HPFRKMERVSGVVANLGRANPLQTLIDLRRTRQQVLYTG-KVGDARHPHPSHWGRVCFLS 390
Query: 532 TPDGSPCGLLNHLSHKCKISTEQSDVSKIPSILYSLGVTPAAHVIAAGPSMCC---VQLD 588
TPDG CGL+ ++S +ST+ + + +L++ G+ + + +C V L+
Sbjct: 391 TPDGENCGLVKNMSLLGLVSTQ--GLESVVEMLFTCGMEELMNDTST--PLCGKHKVLLN 446
Query: 589 GKIIGWCSHEQGKVVADTLRFWKVEGKTPGLPVDLEVGYVPPTTSGQYPGLFLFGGHS-R 647
G +G C+ + V R + E D EV P L + H +
Sbjct: 447 GDWVGLCADSESFVGELKSRRRQSELPLERDKDDNEVRIFTDAGRLLRPLLVVENLHKLK 506
Query: 648 MMRPVRY-----LPLDKEDIVGPFEQVYMNIAVTPEEI--ENNVHSHVEFSPTNILSILA 700
+P +Y L +++G E+ A +++ E ++H E + +L +
Sbjct: 507 QDKPTQYPFKHLLDQGILELIGIEEEEDCTTAWGIKQLLKEPKNYTHCELDLSFLLGVSC 566
Query: 701 NLTPFSDFNQSPRNMYQCQMG-KQTMGTPGVALCHRSDNKLYRLQTGQTPIVKANLYDDY 759
+ PF++ + R +YQ Q +Q +G R D +L Q P+ K +
Sbjct: 567 AIVPFANHDHGKRVLYQSQKHCQQAIGFSSTNPNIRCDTLSQQLFYPQKPLFKTLASECL 626
Query: 760 GMDNFPNGTNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYKVEKVNL----SMNRS 815
+ NG NA+VAV + GY+ +D++++NK++ ERG + K + S R
Sbjct: 627 EKEVLFNGQNAIVAVNVHLGYNQEDSIVMNKASLERGMFRSEQIRSYKAEVDTKDSEKRK 686
Query: 816 RGDPITQHFGFGTDEWPKEWLEKLDDDGLPLIGTYVEEGDPICAYFDDTLNKTKIKTYHS 875
+ D + Q FG ++ L+DDG P IG + GD + ++ IK H+
Sbjct: 687 KMDELVQ---FGKTYSKIGKVDSLEDDGFPFIGANMSTGDIVIGRCTESGADHSIKLKHT 743
Query: 876 SEPAYIEEVKLIGDESSKFQELQAITIKYRIRRTPQIGDKFSSRHGQKGVCSRKWPTIDM 935
+ V DE F + R R+P +GDKFSS HGQKGV +
Sbjct: 744 ERGIVQKVVLSSNDEGKNFA-----AVSLRQVRSPCLGDKFSSMHGQKGVLGYLEEQQNF 798
Query: 936 PFSETGIQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWTFNESDTPADYF 995
PF+ GI PD++INPHAFPSR T G +E+ K A ++ + + + A F
Sbjct: 799 PFTIQGIVPDIVINPHAFPSRQTPGQLLEAALSKGIACPIQKKEGSSAAYTKLTRHATPF 858
Query: 996 G--------DQLAKAGYNYHGNEPMYSGATGEELRADIYIGVVYYQRLRHMVNDKFQVRS 1047
+QL +AG++ GNE +Y+G +GE +R+ I++G +YQRL HM +K + R+
Sbjct: 859 STPGVTEITEQLHRAGFSRWGNERVYNGRSGEMMRSLIFMGPTFYQRLVHMSENKVKFRN 918
Query: 1048 TGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQDRLLNCSDYTQTAVCRDCG 1107
TGPV+ LT QPV RKR GGIR GEMERD LI HG S L +RL SD +Q +CR C
Sbjct: 919 TGPVHPLTRQPVADRKRFGGIRFGEMERDCLIAHGASANLHERLFTLSDSSQMHICRKCK 978
Query: 1108 AILTTQSSVPKIG-SISTVRCRRCALKFDEAKRLITKY 1144
P G I CR CA D R+ Y
Sbjct: 979 TYANVIERTPSSGRKIRGPYCRVCA-SSDHVVRVYVPY 1015
>At3g23780 [K] KOG0214 RNA polymerase II second largest subunit
Length = 946
Score = 263 bits (673), Expect = 9e-70
Identities = 246/897 (27%), Positives = 397/897 (43%), Gaps = 51/897 (5%)
Query: 271 IPVVMILRALCDTNDREIFDHVVGGDTSNSFLTDRLELLLRGFKKRYPTLQNRKQTLQYL 330
IPV ++ AL ++D+E D ++ D ++ +T+ L + + L Y+
Sbjct: 55 IPVWLLFFALGVSSDKEAMD-LIAFDGDDASITNSLIASIHVADAVCEAFRCGNNALTYV 113
Query: 331 GDKFRVVFQASPDMTDLQVGQELLNRIVLVHLGENNKDKFNMLLFMIRKLYSLVAGECSP 390
+ + + D E L+ + L ++ K K L +M++ L + AG+
Sbjct: 114 EQQIKSTKFPPAESVD-----ECLHLYLFPGL-QSLKKKARFLGYMVKCLLNSYAGKRKC 167
Query: 391 DNPDAAQHQEILLGGFLYGMIVKEKIEEYLQNIRLQIQTDINRGLAINFKDQKYMNKVLM 450
+N D+ +++ I L G L ++ +I +L + R ++ + + L+ + D K + L
Sbjct: 168 ENRDSFRNKRIELAGEL----LEREIRVHLAHARRKMTRAMQKHLSGD-GDLKPIEHYLD 222
Query: 451 RVNENIGSKLQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQ 510
I + L STG S +++VSG + N + + R + +
Sbjct: 223 A--SVITNGLSRAFSTGAW-SHPFRKMERVSGVVANLGRANPLQTLIDLRRTRQQVLYTG 279
Query: 511 LKTTTVRKLLPESWGFFCPVHTPDGSPCGLLNHLSHKCKISTEQSDVSKIPSILYSLGVT 570
K R P WG C + TPDG CGL+ ++S +ST+ + + L++ G+
Sbjct: 280 -KVGDARYPHPSHWGRVCFLSTPDGENCGLVKNMSLLGLVSTQS--LESVVEKLFACGME 336
Query: 571 PAAHVIAAGP-SMCCVQLDGKIIGWCSHEQGKVVADTLRFWKVEGKTPGLPVDLEVGYVP 629
V L+G +G C+ + V R + E D EV
Sbjct: 337 ELMDDTCTPLFGKHKVLLNGDWVGLCADSESFVAELKSRRRQSELPRERDKDDNEVRIFT 396
Query: 630 PTTSGQYPGLFLFGGHSRMMRPVRYLPLDKE------DIVGPFEQVYMNIAVTPEEI--E 681
P L + P D +++G E+ N A +++ E
Sbjct: 397 DAGRLLRPLLVVENLQKLKQEKPSQYPFDHLLDHGILELIGIEEEEDCNTAWGIKQLLKE 456
Query: 682 NNVHSHVEFSPTNILSILANLTPFSDFNQSPRNMYQCQMG-KQTMGTPGVALCHRSDNKL 740
+++H E + +L + + PF++ + R +YQ Q +Q +G R D
Sbjct: 457 PKIYTHCELDLSFLLGVSCAVVPFANHDHGRRVLYQSQKHCQQAIGFSSTNPNIRCDTLS 516
Query: 741 YRLQTGQTPIVKANLYDDYGMDNFPNGTNAVVAVISYTGYDMDDAMIINKSADERGFGYG 800
+L Q P+ K + + NG NA+VAV + GY+ +D++++NK++ ERG
Sbjct: 517 QQLFYPQKPLFKTLASECLKKEVLFNGQNAIVAVNVHLGYNQEDSIVMNKASLERGMFRS 576
Query: 801 TMYKVEKVNL----SMNRSRGDPITQHFGFGTDEWPKEWLEKLDDDGLPLIGTYVEEGDP 856
+ K + S R + D + Q FG ++ L+DDG P IG + GD
Sbjct: 577 EQIRSYKAEVDAKDSEKRKKMDELVQ---FGKTHSKIGKVDSLEDDGFPFIGANMSTGDI 633
Query: 857 ICAYFDDTLNKTKIKTYHSSEPAYIEEVKLIGDESSKFQELQAITIKYRIRRTPQIGDKF 916
+ ++ IK H+ + V DE F + R R+P +GDKF
Sbjct: 634 VIGRCTESGADHSIKLKHTERGIVQKVVLSSNDEGKNFA-----AVSLRQVRSPCLGDKF 688
Query: 917 SSRHGQKGVCSRKWPTIDMPFSETGIQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGI 976
SS HGQKGV + PF+ GI PD++INPHAFPSR T G +E+ K G I
Sbjct: 689 SSMHGQKGVLGYLEEQQNFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALSK-GIACPI 747
Query: 977 AQDSTPWTFNESDTPADYFG--------DQLAKAGYNYHGNEPMYSGATGEELRADIYIG 1028
++ + + + A F +QL +AG++ GNE +Y+G +GE +R+ I++G
Sbjct: 748 QKEGSSAAYTKLTRHATPFSTPGVTEITEQLHRAGFSRWGNERVYNGRSGEMMRSMIFMG 807
Query: 1029 VVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQ 1088
+YQRL HM DK + R+TGPV+ LT QPV RKR GGI+ GEMERD LI HG S L
Sbjct: 808 PTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLH 867
Query: 1089 DRLLNCSDYTQTAVCRDCGAILTTQSSVPKIG-SISTVRCRRCALKFDEAKRLITKY 1144
+RL SD +Q +CR C P G I CR C + D R+ Y
Sbjct: 868 ERLFTLSDSSQMHICRKCKTYANVIERTPSSGRKIRGPYCRVC-VSSDHVVRVYVPY 923
>Hs8922399 [K] KOG0215 RNA polymerase III second largest subunit
Length = 343
Score = 218 bits (554), Expect = 6e-56
Identities = 117/238 (49%), Positives = 149/238 (62%), Gaps = 8/238 (3%)
Query: 872 TYHSSEPAYIEEVKLIGDESSKFQELQAITIKYRIRRTPQIGDKFSSRHGQKGVCSRKWP 931
TY + +YIE+V + SS ++ I + R R P+IGDKFSSRHGQKGVC P
Sbjct: 67 TYKGATDSYIEKVMI----SSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVP 122
Query: 932 TIDMPFSETGIQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWTFNESDTP 991
DMPF ++GI PD+I+NPH FPSRMT+G +E LAGKAG L G T + ++
Sbjct: 123 QEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVKDV 182
Query: 992 ADYFGDQLAKAGYNYHGNEPMYSGATGEELRADIYIGVVYYQRLRHMVNDKFQVRSTGPV 1051
+ L + GYNY G + + SG TGE L A IY G VYYQ+L+HMV DK R+ GP
Sbjct: 183 CE----DLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPR 238
Query: 1052 NSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQDRLLNCSDYTQTAVCRDCGAI 1109
LT QP +GR R GG+R+GEMERD LIG+G S LL +RL+ SD + VC CG +
Sbjct: 239 AVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLL 296
>Hs9506619 [K] KOG0216 RNA polymerase I second largest subunit
Length = 336
Score = 187 bits (474), Expect = 1e-46
Identities = 102/269 (37%), Positives = 157/269 (57%), Gaps = 4/269 (1%)
Query: 94 KLSLSIEQVSISKPTSNDGVSSAVERKVFPSESRQRLTSYRGKILLKLKWSVNDGEETFT 153
++S +I IS PT G + E V+P+E R R ++YRGK+ + W+VN +
Sbjct: 72 RISFTILDAVISPPTVPKG-TICKEANVYPAECRGRRSTYRGKLTADINWAVNGISKGII 130
Query: 154 EVRDCGGLPIMLQSNRCHLNKMSPYELVEHREESDEFGGYFIVNGIEKLIRMLIVQRRNH 213
+ + G +PIM++S C+L + P L+EH EE++E GGYFI+NGIEK+IRMLI+ RRN
Sbjct: 131 K-QFLGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNF 189
Query: 214 PMAIIRPSFANRGASYSQYGIQIRSVRPDQTSQTNVLHYLNDGQVTFRFSWRKNEYLIPV 273
P+A+IRP + RG Y+QYG+ + VR + ++ LHYL +G V F +RK + +P+
Sbjct: 190 PIAMIRPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPL 249
Query: 274 VMILRALCDTNDREIFDHVVGGDTSNSFLTDRLELLLRGFKKRYPTLQNRKQTLQYLGDK 333
L+AL +D +IF ++ G +SFL + + +LR + Q KQ L YLG+
Sbjct: 250 GFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGWLTQ--KQVLNYLGEC 307
Query: 334 FRVVFQASPDMTDLQVGQELLNRIVLVHL 362
FRV + Q + L N+ + +HL
Sbjct: 308 FRVKLNVPDWYPNEQAAEFLFNQCICIHL 336
>AtCh015 [K] KOG0214 RNA polymerase II second largest subunit
Length = 1072
Score = 129 bits (324), Expect = 3e-29
Identities = 101/370 (27%), Positives = 163/370 (43%), Gaps = 48/370 (12%)
Query: 767 GTNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYK---VEKVNLSMNRSRGDP--IT 821
G N +VA + + GY+ +DA++I++ YG +Y + K + + + P IT
Sbjct: 654 GKNILVAYMPWEGYNFEDAVLISEC-----LVYGDIYTSFHIRKYEIQTHVTTQGPERIT 708
Query: 822 QHFGFGTDEWPKEWLEKLDDDGLPLIGTYVEEGDPICAYFDDTLNKTK------------ 869
+ L LD +G+ ++G++VE GD + + K
Sbjct: 709 KEI----PHLEGRLLRNLDKNGIVMLGSWVETGDILVGKLTPQVAKESSYAPEDRLLRAI 764
Query: 870 --IKTYHSSEPAY---------IEEVKLIGDESSKFQELQAITIKYRIRRTPQIGDKFSS 918
I+ S E + +V+ + + + I + +R ++GDK +
Sbjct: 765 LGIQVSTSKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPEIIRVYISQKREIKVGDKVAG 824
Query: 919 RHGQKGVCSRKWPTIDMPFSETGIQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQ 978
RHG KG+ S+ P DMP+ + G D++ NP PSRM +G E G AG+L
Sbjct: 825 RHGNKGIISKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHY 884
Query: 979 DSTPWTFN-ESDTPADYFGDQLAKAGYN----------YHGNEPMYSGATGEELRADIYI 1027
P+ E + +L +A Y G ++ G TG+ + I
Sbjct: 885 RIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVII 944
Query: 1028 GVVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFLL 1087
G Y +L H V+DK RS+G +T QP++GR + GG RVGEME AL G G + +L
Sbjct: 945 GKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRSKQGGQRVGEMEVWALEGFGVAHIL 1004
Query: 1088 QDRLLNCSDY 1097
Q+ L SD+
Sbjct: 1005 QEMLTYKSDH 1014
>SPAC23G3.01 [K] KOG0214 RNA polymerase II second largest subunit
Length = 728
Score = 109 bits (273), Expect = 2e-23
Identities = 151/587 (25%), Positives = 249/587 (41%), Gaps = 65/587 (11%)
Query: 94 KLSLSIEQVSISKPTSNDGVSSAVERKVFPSESRQRLTSY--------RGKILLKLKWSV 145
+ ++ Q+ +S+PT + S +FP E+R R +Y R K+++ +V
Sbjct: 74 RYEINFGQIYLSRPTMTEADGSTTT--MFPQEARLRNLTYSSPLYVDMRKKVMVAADSNV 131
Query: 146 NDGEETF-TEVRD-------CGGLPIMLQSNRCHLNKMSPYELVEHREESDEFGGYFIVN 197
GEE + E D G +PIML+S C LN +S EL + E + GGYFI+N
Sbjct: 132 PIGEEEWLVEEEDEEPSKVFIGKIPIMLRSTFCILNGVSDSELYDLNECPYDQGGYFIIN 191
Query: 198 GIEKLIRMLIVQRRNHPMAIIRPSFANRGASYSQYGIQIRSV-----RPDQTSQTNVL-- 250
G EK+I I Q R+ A I F S Y +IRS R + Q ++
Sbjct: 192 GSEKVI---IAQERS--AANIVQVFKKAAPSPIAYVAEIRSALERGSRLISSMQIKLMAR 246
Query: 251 HYLNDGQVTFRFSWRKNEYLIPVVMILRALCDTNDREIFDHVVGGDTSNSFLTDRLELLL 310
+ N GQ T R + IP+V++ RAL DR+I +H+ N F LE++
Sbjct: 247 NTENSGQ-TIRATLPYIRSDIPIVIVFRALGVVPDRDILEHIC--YDPNDF--QMLEMMK 301
Query: 311 RGFKKRYPTLQNRKQTLQYLGDKFRVVFQASPDMTDLQVGQELLNRIVLVHL----GENN 366
++ + +Q++ L Y+G + L+ ++L + +L H+ G
Sbjct: 302 PCIEEAF-VIQDKDIALDYIGKRGSTTGVTREKR--LRYAHDILQKELLPHITTMEGFET 358
Query: 367 KDKFNMLLFMIRKLYSLVAGECSPDNPDAAQHQEILLGGFLYGMIVKEKIEEYLQNIRLQ 426
+ F L +MI ++ PD+ D + + L G L + + + +++
Sbjct: 359 RKAF-FLGYMIHRMLLCALERREPDDRDHFGKKRLDLAGPLLASLFRMLFRKMTRDVYKY 417
Query: 427 IQTDINRGLAINFKDQKYMNKVLMRVNENIGSKLQYFLSTGNLVSQSGLDLQQVSGYTVV 486
+Q + + + N L + I + L+Y L+TGN Q + +V G + V
Sbjct: 418 MQKCV--------ETNREFNLTLAVKSNIITNGLRYSLATGNWGDQKRSMVNRV-GVSQV 468
Query: 487 AEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFFCPVHTPDGSPCGLLNHLSH 546
+ F +SH R + K R+L WG CP TP+G CGL+ +LS
Sbjct: 469 LNRYTFASTLSHLRRTNT-PIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSL 527
Query: 547 KCKISTEQSDVSKIPSILYSLGV-TPAAHVIAAGPSMCCVQLDGKIIGWCSHEQGKVVAD 605
+S S + I L G+ T + +A P+ V ++G +G H + +
Sbjct: 528 MSYVSV-GSPSAPIIEFLEEWGLETLEDYNPSASPNATKVFVNGVWLG--VHRDPAHLTE 584
Query: 606 TLRFWKVEGKTPGLPVDLEVGYVPPTTSGQYPGLFLFGGHSRMMRPV 652
TLR + L + EV V + L LF R+ RP+
Sbjct: 585 TLRSLRRR-----LDISAEVSIVRDIREKE---LRLFTDAGRICRPL 623
>Hs22058718 [K] KOG0215 RNA polymerase III second largest subunit
Length = 273
Score = 55.1 bits (131), Expect = 7e-07
Identities = 67/266 (25%), Positives = 113/266 (42%), Gaps = 43/266 (16%)
Query: 47 VQPHIGSFNALTEGPDGGLLNLGAKDI---GSKVIFDGKGSDTNPNYLGNKLSLSIEQVS 103
V+ HI SFN +N+ K I KV SD +P + L++ +
Sbjct: 40 VKQHIDSFNYF--------INVEIKKIMKANEKVT-----SDADPMWYLKYLNIYVGLPD 86
Query: 104 ISKPTSNDGVSSAVERKVFPSESRQRLTSYRGKILLKLKWSVNDGEETFTEVRDCGGLPI 163
+ + S V R V P E R R +Y I + ++++ + G +PI
Sbjct: 87 VEE-------SFNVTRPVSPHECRLRDMTYSAPITVDIEYT-RGSQRIIRNALPIGRMPI 138
Query: 164 MLQSNRCHLNKMSPYELVEHREESDEFGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFA 223
ML+S+ C L +P E + E + GGYFIV G+EK+I LI ++ + I+
Sbjct: 139 MLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVI--LIQEQLSKNRIIVEAD-- 194
Query: 224 NRGASYSQYGIQIRSVRPDQTSQTNVLHYLNDGQVTFRFSWRKNEYLIPVVMILRAL--- 280
+GA G + S ++ S+TN+ + G+ R + + IP+V+I +
Sbjct: 195 RKGA----VGASVTSSTHEKKSRTNMA--VKQGRFYLRHNTLSED--IPIVIIFKVKLQL 246
Query: 281 ----CDTNDREIFDHVVGGDTSNSFL 302
C + +F +V+ FL
Sbjct: 247 SSENCKNSFSGLFTYVIRDLEGKEFL 272
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.319 0.138 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,436,798
Number of Sequences: 60738
Number of extensions: 3568499
Number of successful extensions: 7444
Number of sequences better than 1.0e-05: 26
Number of HSP's better than 0.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 7256
Number of HSP's gapped (non-prelim): 54
length of query: 1203
length of database: 30,389,216
effective HSP length: 118
effective length of query: 1085
effective length of database: 23,222,132
effective search space: 25196013220
effective search space used: 25196013220
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)