ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII1731 good L KOG3303 Replication, recombination and repair Predicted alpha-helical protein, potentially involved in replication/repair
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII1731 617015 617962 316
(316 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YDR013w [L] KOG3303 Predicted alpha-helical protein potentially ... 280 2e-75
SPBP23A10.09 [L] KOG3303 Predicted alpha-helical protein potenti... 135 6e-32
Hs10800148 [L] KOG3303 Predicted alpha-helical protein potential... 70 4e-12
7292046 [L] KOG3303 Predicted alpha-helical protein potentially ... 70 4e-12
CE03576 [L] KOG3303 Predicted alpha-helical protein potentially ... 64 3e-10
At1g80190 [L] KOG3303 Predicted alpha-helical protein potentiall... 58 2e-08
ECU10g0950 [L] KOG3303 Predicted alpha-helical protein potential... 55 1e-07
>YDR013w [L] KOG3303 Predicted alpha-helical protein potentially involved in
replication/repair
Length = 208
Score = 280 bits (716), Expect = 2e-75
Identities = 141/212 (66%), Positives = 174/212 (81%), Gaps = 5/212 (2%)
Query: 106 MYGDLANKLILEAKRTQQLSQAGFNKQQLPVYQDELVRGILKEVGSLKKNVDYLREQQ-L 164
MYGDL NKL+LEAKRT+QL LP+Y ++++R ILKEV +L+KN +YL+EQQ L
Sbjct: 1 MYGDLGNKLVLEAKRTKQLYARSNQDVNLPMYHEDIIRNILKEVSNLRKNTEYLKEQQQL 60
Query: 165 TDQDNKVAQCQYVVAMLSMERNKRCLLAYQKMRSEMLDSMVWDNNGMEFSSAISNHPNLS 224
D+KVA+CQY V +L MERNKRCLLAYQ++R+++LDSM W+NNG++ S+I+ S
Sbjct: 61 GMLDDKVAKCQYFVTLLCMERNKRCLLAYQRLRTDILDSMAWNNNGLDLMSSIT----FS 116
Query: 225 SFDSSVLSHAEQEYLKEYAQLLTELKSGELSEIDLTGMLQPPSDVFIDVRVLKDAGQIET 284
D++ LSH EQEYLKEY L+T+LKSG+L +IDL+G L PPSDVFIDVRVLKDAG+I+T
Sbjct: 117 QQDTNNLSHQEQEYLKEYCDLITDLKSGDLVDIDLSGSLVPPSDVFIDVRVLKDAGEIQT 176
Query: 285 EYGVFNLIKDSQFFVRQSDVERLIQQGYLQKI 316
EYGVFNLIKDSQFFVRQSDVERLIQQGYLQKI
Sbjct: 177 EYGVFNLIKDSQFFVRQSDVERLIQQGYLQKI 208
>SPBP23A10.09 [L] KOG3303 Predicted alpha-helical protein potentially involved in
replication/repair
Length = 202
Score = 135 bits (341), Expect = 6e-32
Identities = 88/216 (40%), Positives = 120/216 (54%), Gaps = 26/216 (12%)
Query: 108 GDLANKLILEAKRTQQLSQAGFNKQQLPVYQDELVRGILKEVGS-------LKKNVDYLR 160
G+ +NKLI ++KRTQ L LP YQ + V ++ E+ + + +NV +
Sbjct: 6 GNRSNKLIRDSKRTQYLDY-------LPPYQADTVNDVVNEIRAADRESLGILQNVTHEA 58
Query: 161 EQQLTDQDNKVAQCQYVVAMLSMERNKRCLLAYQKMRSEMLDSMVWDNNGMEFSSAISNH 220
Q QD+ ++ S NKRCL+AY +R + L W + G S +
Sbjct: 59 SQPFQPQDHPSEAAALLMFHSSSIYNKRCLMAYHNLRLQRLRQYCW-SGGKRMESCL--- 114
Query: 221 PNLSSFDSSVLSHAEQEYLKEYAQLLTELKSGELSEIDLTGMLQPPSDVFIDVRVLKDAG 280
D+S LS E++YL Y++LL K G SE+DLTG L PP ++FIDVRVLKD G
Sbjct: 115 ------DTS-LSTYERDYLTRYSELLAAYK-GAWSELDLTGSLVPPKNLFIDVRVLKDVG 166
Query: 281 QIETEYGVFNLIKDSQFFVRQSDVERLIQQGYLQKI 316
IETEYG NL K+SQ VR +DVERLI QG+L K+
Sbjct: 167 DIETEYGTINLTKNSQLHVRATDVERLIAQGFLAKL 202
>Hs10800148 [L] KOG3303 Predicted alpha-helical protein potentially involved in
replication/repair
Length = 196
Score = 70.1 bits (170), Expect = 4e-12
Identities = 61/215 (28%), Positives = 112/215 (51%), Gaps = 25/215 (11%)
Query: 106 MYGDLANKLILEAKRTQQLSQAGFNKQQLPVYQDELVRGILKEVGSL-KKNVDYLREQQL 164
M+ + A +LI E R + QLP + ++ +R +L+E+ +L ++N + E +
Sbjct: 1 MFCEKAMELIRELHRAPE--------GQLPAFNEDGLRQVLEEMKALYEQNQSDVNEAKS 52
Query: 165 TDQDNKVAQCQYVVAMLSMERNKRCLLAYQKMRSEMLDSMVWDNNGMEFSSAISNHPNLS 224
+ + + ++ S+ RN+RC +AY R + ++ W E+ S + PN
Sbjct: 53 GGRSDLIPTIKF--RHCSLLRNRRCTVAYLYDRLLRIRALRW-----EYGSVL---PNAL 102
Query: 225 SFDSSVLSHAEQEYLKEYAQ-LLTELKS-GELSEIDLTGMLQPPSDVFIDVRVLKDAGQI 282
F ++ E E+ Y + L T ++S G +D+T ++PP ++I+VR LKD G+
Sbjct: 103 RFH---MAAEEMEWFNNYKRSLATYMRSLGGDEGLDITQDMKPPKSLYIEVRCLKDYGEF 159
Query: 283 ETEYGVFNLI-KDSQFFVRQSDVERLIQQGYLQKI 316
E + G L+ K+SQ F+ + E+LI+QG L+ I
Sbjct: 160 EVDDGTSVLLKKNSQHFLPRWKCEQLIRQGVLEHI 194
>7292046 [L] KOG3303 Predicted alpha-helical protein potentially involved in
replication/repair
Length = 238
Score = 70.1 bits (170), Expect = 4e-12
Identities = 58/205 (28%), Positives = 98/205 (47%), Gaps = 20/205 (9%)
Query: 105 KMYGDLANKLILEAKRTQQLSQAGFNKQQLPVYQDELVRGILKEVGSL-KKNVDYLREQQ 163
KM+G+ A L+ E +R+ Q +P + D+ VR +L+E+ ++ ++NV
Sbjct: 6 KMFGEKAFDLLKELERSSQT---------IPAFDDDGVRQVLEEIKAIFEENVAQASSYN 56
Query: 164 LTDQDNKVAQCQYVVAMLSMERNKRCLLAYQKMRSEMLDSMVWDNNGMEFSSAISNHPNL 223
+ + + A L +RNKRCLLAY R + ++ W EF I
Sbjct: 57 ASGDRSLWPLLNFRHAAL--QRNKRCLLAYLYERCRRIKALRW-----EFGPIIPGDIKQ 109
Query: 224 SSFDSSVLSHAEQEYLKEYAQLLTELKSGELSEIDLTGMLQPPSDVFIDVRVLKDAGQIE 283
+ + V Y K A + + IDLT L+PP ++I+VR ++D G+ E
Sbjct: 110 ALCEPEVTFF--NNYSKSLAAYMCSAGYNQGLPIDLTNNLRPPKSLYIEVRCMEDYGKFE 167
Query: 284 TEYG-VFNLIKDSQFFVRQSDVERL 307
+ G V +L K+SQ ++ ++ VE L
Sbjct: 168 LDDGEVIHLKKNSQHYLPRAQVESL 192
>CE03576 [L] KOG3303 Predicted alpha-helical protein potentially involved in
replication/repair
Length = 218
Score = 63.9 bits (154), Expect = 3e-10
Identities = 67/226 (29%), Positives = 97/226 (42%), Gaps = 39/226 (17%)
Query: 109 DLANKLILEAKRTQQLSQAGFNKQQLPVYQDELVRGILKEVGSL-KKN---VDYLREQQL 164
D A +L+LE KR N LP Y ELVR +++ L +KN V+ +R
Sbjct: 13 DKALQLVLEMKR---------NPDVLPPYNTELVRQCYQKIDELFQKNAAVVEKIRAGLP 63
Query: 165 TD----QDNKVAQCQYVVAM-------LSMERNKRCLLAYQKMRSEMLDSMVWDNNGMEF 213
D Q A C V+ S +RC++AY R + S W G
Sbjct: 64 HDSTLLQPRLAAMCHIRVSREGRFLKYCSGSIFQRCMMAYVNERKNRIRSFRWKYGGA-- 121
Query: 214 SSAISNHPNLSSFDSSVLSHAEQEYLKEYAQLLTELKSGELSEIDLTGMLQ--PPSDVFI 271
L + + L AE ++ EY+ L +S L E + +L PP +F+
Sbjct: 122 ---------LPASVRNALCDAEIQFFNEYSSTLARFQSN-LGEGGVNLLLHSAPPKSLFV 171
Query: 272 DVRVLKDAGQIETEYGV-FNLIKDSQFFVRQSDVERLIQQGYLQKI 316
VR L+D G+ ET G L KDS + + D E LI+QG L+ +
Sbjct: 172 QVRALEDYGEFETSDGTQVQLSKDSLHSLPRQDCEMLIRQGVLELV 217
>At1g80190 [L] KOG3303 Predicted alpha-helical protein potentially involved in
replication/repair
Length = 201
Score = 57.8 bits (138), Expect = 2e-08
Identities = 54/213 (25%), Positives = 102/213 (47%), Gaps = 16/213 (7%)
Query: 106 MYGDLANKLILEAKRTQQLSQAGFNKQQLPVYQDELVRGILKEVGSLKKNVDYLREQQLT 165
MYG +LI + ++ FN + DE + + ++ + ++++ L
Sbjct: 1 MYGRKGYQLIKDFATGEKGQLKPFNSKLF----DETIEECDQNHHLIQSLIRKMQQEGLD 56
Query: 166 DQDNKVAQCQ-YVVAMLSMERNKRCLLAYQKMRSEMLDSMVWDNNGMEFSSAISNHPNLS 224
Q+N+ A ++ L++ RNKRCL+AY R+E++ + W G+E +L
Sbjct: 57 VQNNRNADHYGALIHHLALIRNKRCLMAYVYNRAEIVRDLAW-RVGLELL-------DLP 108
Query: 225 SFDSSVLSHAEQEYLKEYAQLLTELKSGELSEIDLTGMLQPPSDVFIDVRVLKDAGQ-IE 283
S L+ E+EY K ++ L G++ I+L + PP D +I VR+L D + I
Sbjct: 109 SEIQEKLTTLEKEYFKNHSVALKSY-MGKVG-IELNVDMVPPKDPYIKVRILDDIDEGIV 166
Query: 284 TEYGVFNLIKDSQFFVRQSDVERLIQQGYLQKI 316
N + S F++++D E I +G ++++
Sbjct: 167 LSDKTTNFARHSMHFLKRTDAEPYIARGQMEEL 199
>ECU10g0950 [L] KOG3303 Predicted alpha-helical protein potentially involved in
replication/repair
Length = 182
Score = 55.1 bits (131), Expect = 1e-07
Identities = 41/141 (29%), Positives = 67/141 (47%), Gaps = 18/141 (12%)
Query: 176 YVVAMLSMERNKRCLLAYQKMRSEMLDSMVWDNNGMEFSSAISNHPNLSSFDSSVLSHAE 235
YV+ ERN+R L +Y+ RS L F S S + +LSH E
Sbjct: 60 YVMMKYFKERNERILRSYKFHRSAAL-----------FDSFFSKKKTVG-----MLSHEE 103
Query: 236 QEYLKEYAQLLTELKSGELSEIDLTGMLQPPSDVFIDVRVLKDAGQIETEYGVFNLIKDS 295
+E+ ++Y+ +L E ID T + PP F+ V L+D G + E + L KD
Sbjct: 104 EEHAEKYSNMLREYLE-PFKHIDFT-VQAPPVQFFVQVITLRDCGVVMDEGDLIELKKDR 161
Query: 296 QFFVRQSDVERLIQQGYLQKI 316
+F++++ + LI G+++ I
Sbjct: 162 IYFMKKNAIVHLIDSGFVRII 182
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.320 0.135 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,192,189
Number of Sequences: 60738
Number of extensions: 745986
Number of successful extensions: 2108
Number of sequences better than 1.0e-05: 7
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2094
Number of HSP's gapped (non-prelim): 7
length of query: 316
length of database: 30,389,216
effective HSP length: 106
effective length of query: 210
effective length of database: 23,950,988
effective search space: 5029707480
effective search space used: 5029707480
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)