ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII1740 good A KOG1475 RNA processing and modification Ribosomal protein RPL1/RPL2/RL4L4
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII1740 621094 620006 -363
(363 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YDR012w [A] KOG1475 Ribosomal protein RPL1/RPL2/RL4L4 590 e-168
YBR031w [A] KOG1475 Ribosomal protein RPL1/RPL2/RL4L4 590 e-168
SPBC1711.06 [A] KOG1475 Ribosomal protein RPL1/RPL2/RL4L4 467 e-131
SPBP8B7.03c [A] KOG1475 Ribosomal protein RPL1/RPL2/RL4L4 463 e-130
Hs16579885 [A] KOG1475 Ribosomal protein RPL1/RPL2/RL4L4 392 e-109
At3g09630 [A] KOG1475 Ribosomal protein RPL1/RPL2/RL4L4 362 e-100
At5g02870 [A] KOG1475 Ribosomal protein RPL1/RPL2/RL4L4 360 2e-99
CE07669 [A] KOG1475 Ribosomal protein RPL1/RPL2/RL4L4 330 2e-90
ECU08g0830 [A] KOG1475 Ribosomal protein RPL1/RPL2/RL4L4 261 1e-69
Hs14741953 [A] KOG1475 Ribosomal protein RPL1/RPL2/RL4L4 249 4e-66
Hs18583527_2 [A] KOG1475 Ribosomal protein RPL1/RPL2/RL4L4 133 5e-31
Hs17437314 [A] KOG1475 Ribosomal protein RPL1/RPL2/RL4L4 120 3e-27
Hs22041852 [A] KOG1475 Ribosomal protein RPL1/RPL2/RL4L4 105 1e-22
Hs17446088 [A] KOG1475 Ribosomal protein RPL1/RPL2/RL4L4 104 2e-22
>YDR012w [A] KOG1475 Ribosomal protein RPL1/RPL2/RL4L4
Length = 362
Score = 590 bits (1520), Expect = e-168
Identities = 297/363 (81%), Positives = 317/363 (86%), Gaps = 1/363 (0%)
Query: 1 MSIPQVAVLSLNGETTSTDLPLPAVFRAPIRPDIVHSVFTSVNKNKRQAYAVSEKAGHQT 60
MS PQV V SL GE T+ LPLPAVF APIRPDIVH+VFTSVNKNKRQAYAVSEKAGHQT
Sbjct: 1 MSRPQVTVHSLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQT 60
Query: 61 SAESWGTGRAVARIPRVGGGGTHRSGQAAFGNMCRGGRMFAPTKTWRKWNVKVNQNEKRY 120
SAESWGTGRAVARIPRVGGGGT RSGQ AFGNMCRGGRMFAPTKTWRKWNVKVN NEKRY
Sbjct: 61 SAESWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRY 120
Query: 121 XXXXXXXXXXXXXXXXXRGHRVEKVPSIPLVVSDDLQSIQKTKEAVAALKAVGAHSDVIK 180
RGHRVEK+P IPLVVS DL+SIQKTKEAVAALKAVGAHSD++K
Sbjct: 121 ATASAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVGAHSDLLK 180
Query: 181 VVKSKKLRAGKGKYRNRRFTQRRGPLVVYSEDNGVVKAFRNVPGVETANVASLGLLQLAP 240
V+KSKKLRAGKGKYRNRR+TQRRGPLVVY+EDNG+VKA RNVPGVETANVASL LLQLAP
Sbjct: 181 VLKSKKLRAGKGKYRNRRWTQRRGPLVVYAEDNGIVKALRNVPGVETANVASLNLLQLAP 240
Query: 241 GAHLGRFVIWTQSAFSKLDQIWGSETVASVKAGYALPSNIISTSDVTRIINSTEIQSVLR 300
GAHLGRFVIWT++AF+KLDQ+WGSETVAS K GY LPS+IISTSDVTRIINS+EIQS +R
Sbjct: 241 GAHLGRFVIWTEAAFTKLDQVWGSETVASSKVGYTLPSHIISTSDVTRIINSSEIQSAIR 300
Query: 301 AAGQATQKRTHVQKKNPLKNKQVLLRLNPYAKVFAAEKLGSKKVDQANKIKPSATALETL 360
AGQATQKRTHV KKNPLKNKQVLLRLNPYAKVFAAEKLGSKK ++ KP+A ETL
Sbjct: 301 PAGQATQKRTHVLKKNPLKNKQVLLRLNPYAKVFAAEKLGSKKAEKTG-TKPAAVFAETL 359
Query: 361 KHD 363
KHD
Sbjct: 360 KHD 362
>YBR031w [A] KOG1475 Ribosomal protein RPL1/RPL2/RL4L4
Length = 362
Score = 590 bits (1520), Expect = e-168
Identities = 297/363 (81%), Positives = 317/363 (86%), Gaps = 1/363 (0%)
Query: 1 MSIPQVAVLSLNGETTSTDLPLPAVFRAPIRPDIVHSVFTSVNKNKRQAYAVSEKAGHQT 60
MS PQV V SL GE T+ LPLPAVF APIRPDIVH+VFTSVNKNKRQAYAVSEKAGHQT
Sbjct: 1 MSRPQVTVHSLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQT 60
Query: 61 SAESWGTGRAVARIPRVGGGGTHRSGQAAFGNMCRGGRMFAPTKTWRKWNVKVNQNEKRY 120
SAESWGTGRAVARIPRVGGGGT RSGQ AFGNMCRGGRMFAPTKTWRKWNVKVN NEKRY
Sbjct: 61 SAESWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRY 120
Query: 121 XXXXXXXXXXXXXXXXXRGHRVEKVPSIPLVVSDDLQSIQKTKEAVAALKAVGAHSDVIK 180
RGHRVEK+P IPLVVS DL+SIQKTKEAVAALKAVGAHSD++K
Sbjct: 121 ATASAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVGAHSDLLK 180
Query: 181 VVKSKKLRAGKGKYRNRRFTQRRGPLVVYSEDNGVVKAFRNVPGVETANVASLGLLQLAP 240
V+KSKKLRAGKGKYRNRR+TQRRGPLVVY+EDNG+VKA RNVPGVETANVASL LLQLAP
Sbjct: 181 VLKSKKLRAGKGKYRNRRWTQRRGPLVVYAEDNGIVKALRNVPGVETANVASLNLLQLAP 240
Query: 241 GAHLGRFVIWTQSAFSKLDQIWGSETVASVKAGYALPSNIISTSDVTRIINSTEIQSVLR 300
GAHLGRFVIWT++AF+KLDQ+WGSETVAS K GY LPS+IISTSDVTRIINS+EIQS +R
Sbjct: 241 GAHLGRFVIWTEAAFTKLDQVWGSETVASSKVGYTLPSHIISTSDVTRIINSSEIQSAIR 300
Query: 301 AAGQATQKRTHVQKKNPLKNKQVLLRLNPYAKVFAAEKLGSKKVDQANKIKPSATALETL 360
AGQATQKRTHV KKNPLKNKQVLLRLNPYAKVFAAEKLGSKK ++ KP+A ETL
Sbjct: 301 PAGQATQKRTHVLKKNPLKNKQVLLRLNPYAKVFAAEKLGSKKAEKTG-TKPAAVFTETL 359
Query: 361 KHD 363
KHD
Sbjct: 360 KHD 362
>SPBC1711.06 [A] KOG1475 Ribosomal protein RPL1/RPL2/RL4L4
Length = 363
Score = 467 bits (1201), Expect = e-131
Identities = 234/346 (67%), Positives = 270/346 (77%), Gaps = 2/346 (0%)
Query: 4 PQVAVLSLNGETTSTDLPLPAVFRAPIRPDIVHSVFTSVNKNKRQAYAVSEKAGHQTSAE 63
P V++ + +G +S L LP VF+APIRPD+V SV T+V KNKRQ YAVSEKAGHQTSAE
Sbjct: 6 PTVSIYNKDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAE 65
Query: 64 SWGTGRAVARIPRVGGGGTHRSGQAAFGNMCRGGRMFAPTKTWRKWNVKVNQNEKRYXXX 123
SWGTGRA+ARIPRVGGGGTHRSGQAAFGNMCR GRMFAPTKTWRKW+VKVNQNEKRY
Sbjct: 66 SWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIA 125
Query: 124 XXXXXXXXXXXXXXRGHRVEKVPSIPLVVSDDLQSIQKTKEAVAALKAVGAHSDVIKVVK 183
RGHR+E++P +PLVV D +QS QKTKEAVA LK + A+ DVIKV
Sbjct: 126 SAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVAN 185
Query: 184 SKKLRAGKGKYRNRRFTQRRGPLVVYSEDNGVVKAFRNVPGVETANVASLGLLQLAPGAH 243
S+KLRAGKGK RNRR QRRGPLVV++ED G+VKAFRN+PGVE NV L LLQLAPG H
Sbjct: 186 SRKLRAGKGKLRNRRHVQRRGPLVVFNEDTGIVKAFRNIPGVEIVNVRRLNLLQLAPGGH 245
Query: 244 LGRFVIWTQSAFSKLDQIWGSET-VASVKAGYALPSNIISTSDVTRIINSTEIQSVLRAA 302
LGRFVIWT+SAF LD ++GS T VA +K Y LP NIIS +DVTR+INS EIQS+++AA
Sbjct: 246 LGRFVIWTKSAFGLLDSVFGSTTEVAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAA 305
Query: 303 GQATQKRTHVQKKNPLKNKQVLLRLNPYAKVFAAE-KLGSKKVDQA 347
G + KR HVQKKNPLKNK VL RLNPYAK + A K+ S+K +A
Sbjct: 306 GPSRVKRAHVQKKNPLKNKAVLSRLNPYAKAYKANVKINSEKTPKA 351
>SPBP8B7.03c [A] KOG1475 Ribosomal protein RPL1/RPL2/RL4L4
Length = 363
Score = 463 bits (1192), Expect = e-130
Identities = 232/346 (67%), Positives = 268/346 (77%), Gaps = 2/346 (0%)
Query: 4 PQVAVLSLNGETTSTDLPLPAVFRAPIRPDIVHSVFTSVNKNKRQAYAVSEKAGHQTSAE 63
P V++ S +G +S + LP VF+APIRPD+V SV T+V KNKRQ YAVSEKAGHQTSAE
Sbjct: 6 PTVSIYSKDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAE 65
Query: 64 SWGTGRAVARIPRVGGGGTHRSGQAAFGNMCRGGRMFAPTKTWRKWNVKVNQNEKRYXXX 123
SWGTGRA+ARIPRVGGGGTHRSGQAAFGNMCR GRMFAPTKTWRKW+VKVNQNEKRY
Sbjct: 66 SWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIS 125
Query: 124 XXXXXXXXXXXXXXRGHRVEKVPSIPLVVSDDLQSIQKTKEAVAALKAVGAHSDVIKVVK 183
RGHR+E++P +PLVV D +QS QKTKEAVA LK + A+ DV+KV
Sbjct: 126 SAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVAN 185
Query: 184 SKKLRAGKGKYRNRRFTQRRGPLVVYSEDNGVVKAFRNVPGVETANVASLGLLQLAPGAH 243
S+KLRAGKGK RNRR QRRGPLVV++ED G+VKAFRN+PGVE NV L LLQLAPG H
Sbjct: 186 SRKLRAGKGKLRNRRHVQRRGPLVVFNEDAGIVKAFRNIPGVEIVNVRRLNLLQLAPGGH 245
Query: 244 LGRFVIWTQSAFSKLDQIWGSET-VASVKAGYALPSNIISTSDVTRIINSTEIQSVLRAA 302
LGRFVIWT+SAF LD ++GS T A +K Y LP NIIS +DVTR+INS EIQS+++AA
Sbjct: 246 LGRFVIWTKSAFGLLDSVFGSTTEAAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAA 305
Query: 303 GQATQKRTHVQKKNPLKNKQVLLRLNPYAKVFAAE-KLGSKKVDQA 347
G + KR HVQKKNPLKNK VL RLNPYAK + A KL + K +A
Sbjct: 306 GPSRVKRAHVQKKNPLKNKAVLARLNPYAKAYKANVKLNTGKTPKA 351
>Hs16579885 [A] KOG1475 Ribosomal protein RPL1/RPL2/RL4L4
Length = 427
Score = 392 bits (1008), Expect = e-109
Identities = 193/359 (53%), Positives = 257/359 (70%), Gaps = 3/359 (0%)
Query: 4 PQVAVLSLNGETTSTDLPLPAVFRAPIRPDIVHSVFTSVNKNKRQAYAVSEKAGHQTSAE 63
P ++V S GE++ ++ LPAVF+APIRPDIV+ V T++ KN RQ YAVSE AGHQTSAE
Sbjct: 6 PLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAE 65
Query: 64 SWGTGRAVARIPRVGGGGTHRSGQAAFGNMCRGGRMFAPTKTWRKWNVKVNQNEKRYXXX 123
SWGTGRAVARIPRV GGGTHRSGQ AFGNMCRGGRMFAPTKTWR+W+ +VN +KRY
Sbjct: 66 SWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAIC 125
Query: 124 XXXXXXXXXXXXXXRGHRVEKVPSIPLVVSDDLQSIQKTKEAVAALKAVGAHSDVIKVVK 183
+GHR+E+VP +PLVV D ++ +KTKEAV LK + A +D+ KV
Sbjct: 126 SALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYA 185
Query: 184 SKKLRAGKGKYRNRRFTQRRGPLVVYSEDNGVVKAFRNVPGVETANVASLGLLQLAPGAH 243
S+++RAGKGK RNRR QRRGP ++Y+EDNG++KAFRN+PG+ NV+ L +L+LAPG H
Sbjct: 186 SQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGH 245
Query: 244 LGRFVIWTQSAFSKLDQIWGS-ETVASVKAGYALPSNIISTSDVTRIINSTEIQSVLRAA 302
+GRF IWT+SAF KLD+++G+ AS+K+ Y LP + + +D++RI+ S EIQ LRA
Sbjct: 246 VGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMINTDLSRILKSPEIQRALRAP 305
Query: 303 GQATQKRTHVQKKNPLKNKQVLLRLNPYAKVFAAEKLGSKKVDQANKIKPSATALETLK 361
+ +R V KKNPLKN +++L+LNPYAK + + + ++ +A A L+
Sbjct: 306 RKKIHRR--VLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLRVDKAAAAAAALQ 362
>At3g09630 [A] KOG1475 Ribosomal protein RPL1/RPL2/RL4L4
Length = 406
Score = 362 bits (928), Expect = e-100
Identities = 191/360 (53%), Positives = 246/360 (68%), Gaps = 14/360 (3%)
Query: 4 PQVAVLSLNGETT---STDLPLPAVFRAPIRPDIVHSVFTSVNKNKRQAYAVSEKAGHQT 60
P V + +L+G+ + S+ + LP V AP+RPDIV+ V ++ N RQ YAVS+KAGHQT
Sbjct: 8 PLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQT 67
Query: 61 SAESWGTGRAVARIPRVGGGGTHRSGQAAFGNMCRGGRMFAPTKTWRKWNVKVNQNEKRY 120
SAESWGTGRAV+RIPRV GGGTHR+GQAAFGNMCRGGRMFAPTK WR+W+ +VN N KR+
Sbjct: 68 SAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRH 127
Query: 121 XXXXXXXXXXXXXXXXXRGHRVEKVPSIPLVVSDDLQSIQKTKEAVAALKAVGAHSDVIK 180
RGH++E VP +PLVVSD ++++KT A+ LK +GA+ D K
Sbjct: 128 AIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEK 187
Query: 181 VVKSKKLRAGKGKYRNRRFTQRRGPLVVY-SEDNGVVKAFRNVPGVETANVASLGLLQLA 239
S +R GKGK RNRR+ R+GPLVVY +E + +VKAFRN+PGVE +V L LL+LA
Sbjct: 188 AKNSIGIRPGKGKMRNRRYISRKGPLVVYGTEGSKIVKAFRNLPGVELCHVERLNLLKLA 247
Query: 240 PGAHLGRFVIWTQSAFSKLDQIWGS-ETVASVKAGYALPSNIISTSDVTRIINSTEIQSV 298
PG HLGRFVIWT+SAF KL+ I+GS E + K GY LP + +D+ RIINS EIQSV
Sbjct: 248 PGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEIQSV 307
Query: 299 LRAAGQATQKRTHVQKKNPLKNKQVLLRLNPYAK-------VFAAEKLGSKKVDQANKIK 351
+ + ++ V KKNPLKN V+L+LNPYAK + A+++ +KK A K K
Sbjct: 308 VNPIKKDAKRA--VLKKNPLKNLNVMLKLNPYAKTAKRMSLLAEAQRVKAKKEKLAKKRK 365
>At5g02870 [A] KOG1475 Ribosomal protein RPL1/RPL2/RL4L4
Length = 407
Score = 360 bits (923), Expect = 2e-99
Identities = 189/360 (52%), Positives = 242/360 (66%), Gaps = 11/360 (3%)
Query: 4 PQVAVLSLNGETT---STDLPLPAVFRAPIRPDIVHSVFTSVNKNKRQAYAVSEKAGHQT 60
P V V L+G+ + ST + LP V AP+RPDIV+ V ++ N RQ YAVS+KAGHQT
Sbjct: 9 PLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQT 68
Query: 61 SAESWGTGRAVARIPRVGGGGTHRSGQAAFGNMCRGGRMFAPTKTWRKWNVKVNQNEKRY 120
SAESWGTGRAV+RIPRV GGGTHR+GQAAFGNMCRGGRMFAPTK WR+W+ +VN N KR+
Sbjct: 69 SAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRH 128
Query: 121 XXXXXXXXXXXXXXXXXRGHRVEKVPSIPLVVSDDLQSIQKTKEAVAALKAVGAHSDVIK 180
RGH++E VP +PLVVSD ++++KT A+ LK +GA+ D K
Sbjct: 129 AIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEK 188
Query: 181 VVKSKKLRAGKGKYRNRRFTQRRGPLVVY-SEDNGVVKAFRNVPGVETANVASLGLLQLA 239
S +R GKGK RNRR+ R+GPLVV+ +E +VKAFRN+PGVE +V L LL+LA
Sbjct: 189 AKNSIGIRPGKGKMRNRRYISRKGPLVVFGTEGAKIVKAFRNLPGVELCHVERLNLLKLA 248
Query: 240 PGAHLGRFVIWTQSAFSKLDQIWGS-ETVASVKAGYALPSNIISTSDVTRIINSTEIQSV 298
PG HLGRFVIWT+SAF KL+ I+GS E + K GY LP + +D+ RIINS E+QSV
Sbjct: 249 PGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEVQSV 308
Query: 299 LRAAGQATQKRTHVQKKNPLKNKQVLLRLNPYAKVFAAEKLGSKKVDQANKIKPSATALE 358
+ +++ V KKNPLKN V+ +LNPYAK L + +A+++K LE
Sbjct: 309 VNPIKDGSKRA--VLKKNPLKNLNVMFKLNPYAKTAKRMSL----LAEASRVKAKKEKLE 362
>CE07669 [A] KOG1475 Ribosomal protein RPL1/RPL2/RL4L4
Length = 345
Score = 330 bits (846), Expect = 2e-90
Identities = 175/345 (50%), Positives = 228/345 (65%), Gaps = 9/345 (2%)
Query: 4 PQVAVLSLNGETTSTDLPLPAVFRAPIRPDIVHSVFTSVNKNKRQAYAVSEKAGHQTSAE 63
P V V E T + + LPAVFR PIRPD+V + V +N+RQA+AV+ KAG Q SAE
Sbjct: 5 PLVTVYDEKYEATQSQIRLPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQHSAE 64
Query: 64 SWGTGRAVARIPRVGGGGTHRSGQAAFGNMCRGGRMFAPTKTWRKWNVKVNQNEKRYXXX 123
SWGTGRAVARIPRV GGGTHRSGQ AFGNMCRGG MFAP K +R+W+ VN +KRY
Sbjct: 65 SWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRYAVS 124
Query: 124 XXXXXXXXXXXXXXRGHRVEKVPSIPLVVSDDLQSIQKTKEAVAALKAVGAHSDVIKVVK 183
RGH +++V +PLVVSD ++S +KTKEAV L+ +D+ KV
Sbjct: 125 SAIAASGIPALLQARGHVIDQVAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADIEKVYN 184
Query: 184 SKKLRAGKGKYRNRRFTQRRGPLVVYSEDNGVVKAFRNVPGVETANVASLGLLQLAPGAH 243
SK+ RAGKGK RNR+ Q+ GP+V+Y +D +AFRN+PGV+ NV L LL+LAPG H
Sbjct: 185 SKRNRAGKGKLRNRQHKQKLGPVVIYGQDAECARAFRNIPGVDVMNVERLNLLKLAPGGH 244
Query: 244 LGRFVIWTQSAFSKLDQIWGSETVAS---VKAGYALPSNIISTSDVTRIINSTEIQSVLR 300
LGR +IWT+SAF KLD I+G+ TVA+ +K G+++P I++ SD +RII S E+ +R
Sbjct: 245 LGRLIIWTESAFKKLDTIYGT-TVANSSQLKKGWSVPLPIMANSDFSRIIRSEEVVKAIR 303
Query: 301 AAGQ-ATQKRTHVQKKNPLKNKQVLLRLNPYAKVF-AAEKLGSKK 343
A + + H +NPLK + +L +LNPYA + A K KK
Sbjct: 304 APKKNPVLPKVH---RNPLKKRTLLYKLNPYASILRKASKANVKK 345
>ECU08g0830 [A] KOG1475 Ribosomal protein RPL1/RPL2/RL4L4
Length = 335
Score = 261 bits (667), Expect = 1e-69
Identities = 133/296 (44%), Positives = 185/296 (61%), Gaps = 2/296 (0%)
Query: 5 QVAVLSLNGETTSTDLPLPAVFRAPIRPDIVHSVFTSVNKNKRQAYAVSEKAGHQTSAES 64
Q+ +G T L LP VF PIR D+V ++ RQ YAVS+ AG Q SAES
Sbjct: 4 QINCYEADGVTVKKTLDLPEVFSVPIRQDLVLKTYSLYRMKTRQPYAVSKNAGMQHSAES 63
Query: 65 WGTGRAVARIPRVGGGGTHRSGQAAFGNMCRGGRMFAPTKTWRKWNVKVNQNEKRYXXXX 124
WGTGRA+AR+PRV GGGT R+GQ AF N CR GRM PTKT R+W KV +N K+
Sbjct: 64 WGTGRAIARVPRVKGGGTRRAGQGAFANFCRKGRMAHPTKTHRRWARKVVENTKKIAEAM 123
Query: 125 XXXXXXXXXXXXXRGHRVEKVPSIPLVVSDDLQSIQKTKEAVAALKAVGAHSDVIKVVKS 184
RGHR+ V +P++VSDD+ +KTK+AV L+ + ++ +V KS
Sbjct: 124 AVAASAQASLVEARGHRISDVKMLPIIVSDDIAKARKTKDAVEILRNLNMTEELKRVEKS 183
Query: 185 KKLRAGKGKYRNRRFTQRRGPLVVYSEDNGVVKAFRNVPGVETANVASLGLLQLAPGAHL 244
+ +R GKGK RNRR+TQR+G L+V+ E + ++ FRN+ GV+ ++ SL LL+LAPG
Sbjct: 184 RGVRCGKGKMRNRRYTQRKGILIVHGESSEML-GFRNIRGVDQMSIDSLDLLELAPGGVA 242
Query: 245 GRFVIWTQSAFSKLDQIWGS-ETVASVKAGYALPSNIISTSDVTRIINSTEIQSVL 299
GR +IWT+SAF KLD+I+G E A + G+ LP+ I++ D+ + S +Q++L
Sbjct: 243 GRLIIWTESAFEKLDKIFGGVEREAELTPGFKLPNRIVTHDDLEELFYSDAVQAIL 298
>Hs14741953 [A] KOG1475 Ribosomal protein RPL1/RPL2/RL4L4
Length = 352
Score = 249 bits (636), Expect = 4e-66
Identities = 125/270 (46%), Positives = 177/270 (65%), Gaps = 4/270 (1%)
Query: 93 MCRGGRMFAPTKTWRKWNVKVNQNEKRYXXXXXXXXXXXXXXXXXRGHRVEKVPSIPLVV 152
MCRGGR FAPTKTWR+W+ +VN +KRY +GHR+E+VP +PLVV
Sbjct: 1 MCRGGRRFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVV 60
Query: 153 SDDLQSIQKTKEAVAALKAVGAHSDVIKVVKSKKLRAGKGKYRNRRFTQRRGPLVVYSED 212
D ++ +KTKEAV LK + A +D+ KV S+++RAGKGK RNRR QRRGP ++Y+ED
Sbjct: 61 EDKVEGYRKTKEAVLLLKKLKARNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNED 120
Query: 213 NGVVKAFRNVPGVETANVASLGLLQLAPGAHLGRFVIWTQSAFSKLDQIWGS-ETVASVK 271
NG +KAFRN+P + NV+ L + +LAPG H+GRF IWT SAF KLD+++G+ AS+K
Sbjct: 121 NG-IKAFRNIPAITLLNVSKLTISKLAPGGHVGRFCIWTGSAFRKLDELYGTWRKAASLK 179
Query: 272 AGYALPSNIISTSDVTRIINSTEIQSVLRAAGQATQKRTHVQKKNPLKNKQVLLRLNPYA 331
+ Y LP + + +D++RI+ S EIQ RA + +R V KKNPLKN +++L+LNPYA
Sbjct: 180 SNYNLPMHKMINTDLSRILKSPEIQRAFRAPSKKIHRR--VLKKNPLKNLRIMLKLNPYA 237
Query: 332 KVFAAEKLGSKKVDQANKIKPSATALETLK 361
K + + + ++ +A A L+
Sbjct: 238 KTMRRNTILRQARNHKLRMDKAAAAAAALE 267
>Hs18583527_2 [A] KOG1475 Ribosomal protein RPL1/RPL2/RL4L4
Length = 276
Score = 133 bits (334), Expect = 5e-31
Identities = 81/231 (35%), Positives = 123/231 (53%), Gaps = 39/231 (16%)
Query: 138 RGHRVEKVPSIPLVVSDDLQSIQKTKEAVAALKAVGAHSDVIKVVKSKKLRAGKGKYRNR 197
+GHR+E+ P +PLVV D ++ +KTKEAV LK + A +D+ K
Sbjct: 57 KGHRIEEAPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIEK----------------- 99
Query: 198 RFTQRRGPLVVYSEDNGVVKAFRNVPGVETANVASLGLLQLAPGAHLGRFVIWTQSAFSK 257
G ++ +EDNG+VKAFRN+PG+ N++ L +L+LAPG H+G F IWTQSAF K
Sbjct: 100 ------GRRIICNEDNGIVKAFRNIPGITMLNISKLNILKLAPGGHVGHFCIWTQSAFWK 153
Query: 258 LDQIWGS-ETVASVKAGYALPSNIISTSDVTRIINSTEIQSVLRAAG-----------QA 305
LD+ G+ AS+K+ Y LP + + +D++ ++ S EIQ + +G +A
Sbjct: 154 LDEFSGTWHKAASLKSNYNLPMHKMINTDLSSVLKSPEIQPGITNSGWIRQQPAAAALEA 213
Query: 306 TQKRTHVQKKNPL---KNKQVLLRLNPYAKVFAAEKLGSKKVDQANKIKPS 353
V K P+ K K+ ++ + K EK + K A K KP+
Sbjct: 214 RSDEKGVVGKKPVVCKKGKKAIVDVKKQKKPLVGEKAAATKKPAAEK-KPA 263
Score = 51.6 bits (122), Expect = 2e-06
Identities = 25/47 (53%), Positives = 34/47 (72%)
Query: 10 SLNGETTSTDLPLPAVFRAPIRPDIVHSVFTSVNKNKRQAYAVSEKA 56
S GE++ ++ L A+F+APIRPDIV+ V ++ KN RQ YAVSE A
Sbjct: 2 SEKGESSGKNVTLSAIFKAPIRPDIVNFVHANLCKNNRQPYAVSESA 48
>Hs17437314 [A] KOG1475 Ribosomal protein RPL1/RPL2/RL4L4
Length = 271
Score = 120 bits (301), Expect = 3e-27
Identities = 74/224 (33%), Positives = 111/224 (49%), Gaps = 51/224 (22%)
Query: 6 VAVLSLNGETTSTDLPLPAVFRAPIRPDIVHSVFTSVNKNKRQAYAVSEKAGHQTSAESW 65
++V S +GE++ ++ LPAVF+APIRPDIV+ V T++ H+ + + +
Sbjct: 8 ISVYSESGESSGKNVTLPAVFKAPIRPDIVNFVHTNL---------------HKNNRQPY 52
Query: 66 GTGRAVARIPRVGGGGTHRSGQAAFGNMCRGGRMFAPTKTWRKWNVKVNQNEKRYXXXXX 125
R GT GR A + + V
Sbjct: 53 AVSELAGRQTSAESWGT--------------GRAVAQIPRVQALSALV------------ 86
Query: 126 XXXXXXXXXXXXRGHRVEKVPSIPLVVSDDLQSIQKTKEAVAALKAVGAHSDVIKVVKSK 185
+GH +E+VP +PLVV D ++ +KTKEAV+ LK A +D+ K S+
Sbjct: 87 ----------MSKGHSIEEVPELPLVVEDKVEGYKKTKEAVSLLKKFKAWNDIKKDYASQ 136
Query: 186 KLRAGKGKYRNRRFTQRRGPLVVYSEDNGVVKAFRNVPGVETAN 229
++RAGKGK RNR Q GP ++Y+EDNG++KAFRN+PG+ N
Sbjct: 137 RMRAGKGKMRNRHCIQCTGPYIIYNEDNGIIKAFRNIPGITLLN 180
>Hs22041852 [A] KOG1475 Ribosomal protein RPL1/RPL2/RL4L4
Length = 154
Score = 105 bits (262), Expect = 1e-22
Identities = 48/101 (47%), Positives = 65/101 (63%)
Query: 93 MCRGGRMFAPTKTWRKWNVKVNQNEKRYXXXXXXXXXXXXXXXXXRGHRVEKVPSIPLVV 152
MCRGGR FAPTKTWR+W+ +VN +KRY +GHR+E+VP +PLV
Sbjct: 1 MCRGGRRFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVF 60
Query: 153 SDDLQSIQKTKEAVAALKAVGAHSDVIKVVKSKKLRAGKGK 193
D ++ +KTKEAV LK + A +D+ KV S+++RAG GK
Sbjct: 61 EDKVEGYKKTKEAVLLLKKLKAWNDIEKVYASQRMRAGTGK 101
>Hs17446088 [A] KOG1475 Ribosomal protein RPL1/RPL2/RL4L4
Length = 267
Score = 104 bits (259), Expect = 2e-22
Identities = 49/103 (47%), Positives = 72/103 (69%), Gaps = 1/103 (0%)
Query: 138 RGHRVEKVPSIPLVVSDDLQSIQKTKEAVAALKAVGAHSDVIKVVKSKKLRAGKGKYRNR 197
+ H +E+VP + LVV D ++ K KEAV+ LK + +D+ KV S+++RAG K RNR
Sbjct: 96 KDHHIEEVPELSLVVEDKVEGY-KIKEAVSLLKKLKGWNDIKKVYASQQMRAGNSKMRNR 154
Query: 198 RFTQRRGPLVVYSEDNGVVKAFRNVPGVETANVASLGLLQLAP 240
Q RGP ++Y+EDNG++KAFRN+PG+ NV+ L +L+LAP
Sbjct: 155 HCIQCRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKLAP 197
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.315 0.130 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,362,437
Number of Sequences: 60738
Number of extensions: 749486
Number of successful extensions: 1870
Number of sequences better than 1.0e-05: 14
Number of HSP's better than 0.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1831
Number of HSP's gapped (non-prelim): 17
length of query: 363
length of database: 30,389,216
effective HSP length: 108
effective length of query: 255
effective length of database: 23,829,512
effective search space: 6076525560
effective search space used: 6076525560
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)