ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII1926 good Z KOG3155 Cytoskeleton Actin-related protein Arp2/3 complex, subunit ARPC3
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII1926 687701 688228 176
(176 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YLR370c [Z] KOG3155 Actin-related protein Arp2/3 complex subunit... 291 3e-79
SPBC1778.08c [Z] KOG3155 Actin-related protein Arp2/3 complex su... 198 3e-51
Hs5031597 [Z] KOG3155 Actin-related protein Arp2/3 complex subun... 175 3e-44
Hs18104938 [Z] KOG3155 Actin-related protein Arp2/3 complex subu... 164 4e-41
7300063 [Z] KOG3155 Actin-related protein Arp2/3 complex subunit... 149 1e-36
7293316 [Z] KOG3155 Actin-related protein Arp2/3 complex subunit... 148 4e-36
CE20206 [Z] KOG3155 Actin-related protein Arp2/3 complex subunit... 143 1e-34
At1g60430 [Z] KOG3155 Actin-related protein Arp2/3 complex subun... 131 4e-31
Hs20556694 [Z] KOG3155 Actin-related protein Arp2/3 complex subu... 105 3e-23
Hs20468506 [Z] KOG3155 Actin-related protein Arp2/3 complex subu... 85 6e-17
Hs18577900 [Z] KOG3155 Actin-related protein Arp2/3 complex subu... 79 4e-15
>YLR370c [Z] KOG3155 Actin-related protein Arp2/3 complex subunit ARPC3
Length = 178
Score = 291 bits (745), Expect = 3e-79
Identities = 140/178 (78%), Positives = 158/178 (88%), Gaps = 2/178 (1%)
Query: 1 MPAFHSTFLADPATDRFVGNFALLPLNTKYRGPAYQSNSDYDIIDECLDLFRANSFFKNF 60
MPA+HSTF DP TDR VGNFALLPLNTK+RGPAY SNSDYDIIDECLDLFRANSFFKNF
Sbjct: 1 MPAYHSTFPVDPNTDRMVGNFALLPLNTKFRGPAYPSNSDYDIIDECLDLFRANSFFKNF 60
Query: 61 EIKSPADRILIYGILFINDCLANLNLSTSYNEAVKKLMNLGLDSFAIPGTPGFPLNTVYS 120
EIKSPADR+LIYGILFINDCLA+L ++TS+NEAVK L N+ LD+F +PGTPGFPLN VY
Sbjct: 61 EIKSPADRVLIYGILFINDCLAHLKITTSFNEAVKVLTNVALDNFTLPGTPGFPLNNVYQ 120
Query: 121 IPLDNPADVELLKSYIQQFRQELAMRLLERVYK--DNREVPSKFWLAFTRRRFMNKSL 176
+P+ + ++LLK+YIQQFRQELAMRLLERVY D++E PSKFWLAFTRRRFMNKSL
Sbjct: 121 VPVQDHNSMDLLKTYIQQFRQELAMRLLERVYSSTDSKEYPSKFWLAFTRRRFMNKSL 178
>SPBC1778.08c [Z] KOG3155 Actin-related protein Arp2/3 complex subunit ARPC3
Length = 174
Score = 198 bits (504), Expect = 3e-51
Identities = 100/178 (56%), Positives = 135/178 (75%), Gaps = 6/178 (3%)
Query: 1 MPAFHSTFLADPATD-RFVGNFALLPLNTKYRGPAYQSN-SDYDIIDECLDLFRANSFFK 58
MPA+HS+FL+ TD GN A+LPL TK+RGPAY ++ S DIIDEC+ LFRAN FF+
Sbjct: 1 MPAYHSSFLS--LTDVPTTGNIAMLPLKTKFRGPAYPADESQMDIIDECIGLFRANCFFR 58
Query: 59 NFEIKSPADRILIYGILFINDCLANLNLSTSYNEAVKKLMNLGLDSFAIPGTPGFPLNTV 118
NFEIK PADR LIYG LFI++CL +N +Y +A ++L +L L++F+IPG+ GFPLN +
Sbjct: 59 NFEIKGPADRTLIYGTLFISECLGRVN-GLNYRDAERQLNSLALENFSIPGSAGFPLNAL 117
Query: 119 YSIPLDNPADVELLKSYIQQFRQELAMRLLERVYKDNREVPSKFWLAFTRRRFMNKSL 176
Y+ PL +P D E++++Y+ QFRQELA RLL VY ++ PSK+W F++RRFMNK+L
Sbjct: 118 YAPPL-SPQDAEIMRTYLTQFRQELAYRLLSHVYATEKDHPSKWWTCFSKRRFMNKAL 174
>Hs5031597 [Z] KOG3155 Actin-related protein Arp2/3 complex subunit ARPC3
Length = 178
Score = 175 bits (443), Expect = 3e-44
Identities = 84/176 (47%), Positives = 123/176 (69%), Gaps = 3/176 (1%)
Query: 1 MPAFHSTFLADPATDRFVGNFALLPLNTKYRGPAYQSNSDYDIIDECLDLFRANSFFKNF 60
MPA+HS+ L DP T + +GN ALLP+ ++++GPA + D DI+DE + F+AN FFKN+
Sbjct: 1 MPAYHSS-LMDPDT-KLIGNMALLPIRSQFKGPAPRETKDTDIVDEAIYYFKANVFFKNY 58
Query: 61 EIKSPADRILIYGILFINDCLANLNLSTSYNEAVKKLMNLGLDSFAIPGTPGFPLNTVYS 120
EIK+ ADR LIY L+I++CL L S ++ K++ LG+ +F IPG PGFPLN +Y+
Sbjct: 59 EIKNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYA 118
Query: 121 IPLDNPADVELLKSYIQQFRQELAMRLLERVYKDNREVPSKFWLAFTRRRFMNKSL 176
P + D E++++Y+QQ RQE +RL E+V+ + PSK+W F +R+FMNKSL
Sbjct: 119 KPANKQED-EVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMNKSL 173
>Hs18104938 [Z] KOG3155 Actin-related protein Arp2/3 complex subunit ARPC3
Length = 206
Score = 164 bits (416), Expect = 4e-41
Identities = 82/176 (46%), Positives = 119/176 (67%), Gaps = 3/176 (1%)
Query: 1 MPAFHSTFLADPATDRFVGNFALLPLNTKYRGPAYQSNSDYDIIDECLDLFRANSFFKNF 60
MPA +S+ L DP T + +GN ALLP+ ++++GPA + D DI+DE F+AN FFKN+
Sbjct: 1 MPAHYSS-LMDPDT-KLIGNIALLPIRSQFKGPAPRETKDTDIVDEANYYFKANVFFKNY 58
Query: 61 EIKSPADRILIYGILFINDCLANLNLSTSYNEAVKKLMNLGLDSFAIPGTPGFPLNTVYS 120
EIK+ ADR LIY L+I++CL L S ++ K++ LG+ SF IPG PGFPL+ +Y+
Sbjct: 59 EIKNEADRTLIYLTLYISECLKKLQKCNSKSQGEKEMYTLGIISFPIPGEPGFPLHAIYT 118
Query: 121 IPLDNPADVELLKSYIQQFRQELAMRLLERVYKDNREVPSKFWLAFTRRRFMNKSL 176
P + D E++++Y+QQ RQE +RL E V+ + PS +W F +R+FMNKSL
Sbjct: 119 KPANKQED-EVMRAYLQQLRQETGLRLCEEVFDPKNDKPSTWWTCFVKRQFMNKSL 173
>7300063 [Z] KOG3155 Actin-related protein Arp2/3 complex subunit ARPC3
Length = 197
Score = 149 bits (377), Expect = 1e-36
Identities = 74/159 (46%), Positives = 102/159 (63%), Gaps = 1/159 (0%)
Query: 18 VGNFALLPLNTKYRGPAYQSNSDYDIIDECLDLFRANSFFKNFEIKSPADRILIYGILFI 77
VGN A+LPL T+ RGPA +N + DIIDE L F+AN FF+ +EIKS DR+LIY L+I
Sbjct: 35 VGNMAILPLRTQVRGPAPSANIESDIIDESLYYFKANVFFRTYEIKSDVDRVLIYVTLYI 94
Query: 78 NDCLANLNLSTSYNEAVKKLMNLGLDSFAIPGTPGFPLNTVYSIPLDNPADVELLKSYIQ 137
+CL LN STS + + + +L + F IPG GFPLN VY+ P D +L++ Y+
Sbjct: 95 TECLKKLNRSTSKAQGQQDMYSLAISKFDIPGDAGFPLNAVYAKP-QTAQDADLMRQYLL 153
Query: 138 QFRQELAMRLLERVYKDNREVPSKFWLAFTRRRFMNKSL 176
Q R E R+LE+V+ P+K+W F +++FM KSL
Sbjct: 154 QLRHETGNRVLEKVFNTEDGKPNKWWTCFAKKKFMEKSL 192
>7293316 [Z] KOG3155 Actin-related protein Arp2/3 complex subunit ARPC3
Length = 174
Score = 148 bits (373), Expect = 4e-36
Identities = 80/176 (45%), Positives = 108/176 (60%), Gaps = 7/176 (3%)
Query: 1 MPAFHSTFLADPATDRFVGNFALLPLNTKYRGPAYQSNSDYDIIDECLDLFRANSFFKNF 60
MPAFHS A+ VGN ALLPL T+ RGPA + DIIDE L +++N FF+ +
Sbjct: 1 MPAFHSEIEDFQAS---VGNMALLPLRTQVRGPAPTVDIPNDIIDESLYFWKSNIFFRTY 57
Query: 61 EIKSPADRILIYGILFINDCLANLNLSTSYNEAVKKLMNLGLDSFAIPGTPGFPLNTVYS 120
E+KS DR+LIY L+I +CL L TS ++ ++L L + F IPG GFPLN +Y+
Sbjct: 58 EVKSEVDRVLIYITLYITECLKRLARCTSKSQGQQELYTLAISRFDIPGDAGFPLNGIYT 117
Query: 121 IPLDNPADVELLKSYIQQFRQELAMRLLERVYKDNREVPSKFWLAFTRRRFMNKSL 176
P D EL++ Y Q RQE RLLE+V+ PSK+W+ F +++FM KSL
Sbjct: 118 ----KPEDPELMRQYFLQLRQETGNRLLEKVFDTPDGKPSKWWICFAKKKFMEKSL 169
>CE20206 [Z] KOG3155 Actin-related protein Arp2/3 complex subunit ARPC3
Length = 183
Score = 143 bits (361), Expect = 1e-34
Identities = 80/178 (44%), Positives = 106/178 (58%), Gaps = 4/178 (2%)
Query: 1 MPAFHSTFLADPATDRFVG-NFALLPLNTKYRGPAYQSNSDYDIIDECLDLFRANSFFKN 59
MPA+HS F + N LP+ T ++GPA Q+N D DIIDE L F+ N FF+
Sbjct: 1 MPAYHSKFDTELKVLPLGNTNMGKLPIRTNFKGPAPQTNQD-DIIDEALTYFKPNIFFRE 59
Query: 60 FEIKSPADRILIYGILFINDCLANLNLSTSYNEAVKKLMNLGLDS-FAIPGTPGFPLNTV 118
FEIK PADR +IY I +I +CL L S + K L L L IPG GFPLN++
Sbjct: 60 FEIKGPADRTMIYLIFYITECLRKLQKSPNKIAGQKDLHALALSHLLPIPGENGFPLNSM 119
Query: 119 YSIPLDNPADVELLKSYIQQFRQELAMRLLERVYKDNREVPSKFWLAFTRRRFMNKSL 176
Y P P D + +++Y+QQ RQE+ RL + + D ++ PSK+WL F RRRFM+K L
Sbjct: 120 YKAPQSKP-DEDEMRAYLQQIRQEIGARLCDLAFPDPQDRPSKWWLCFARRRFMDKGL 176
>At1g60430 [Z] KOG3155 Actin-related protein Arp2/3 complex subunit ARPC3
Length = 174
Score = 131 bits (330), Expect = 4e-31
Identities = 71/171 (41%), Positives = 105/171 (60%), Gaps = 4/171 (2%)
Query: 4 FHSTFLADPATDRFVGNFALLPLNTKYRGPAYQSNSDY-DIIDECLDLFRANSFFKNFEI 62
+HS+F+ + + G LLPL + +GPA S D DI+DE + FRAN FF NF+I
Sbjct: 3 YHSSFVDEEGVTKACG-CPLLPLKSHIKGPAPVSEQDKTDIVDEAITFFRANVFFTNFDI 61
Query: 63 KSPADRILIYGILFINDCLANLNLSTSYNEAVKKLMNLGLDSFAIPGTPGFPLNTVYSIP 122
KSPAD++LIY +IN L L + K ++NLGL+ +PG GFP ++S+P
Sbjct: 62 KSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLEDIPVPGETGFPFPGLFSLP 121
Query: 123 LDNPADVELLKSYIQQFRQELAMRLLERVYKDNREVPSKFWLAFTRRRFMN 173
+ + EL ++Y++Q R+E + RLL Y+ N P+K+WLAF +R+FMN
Sbjct: 122 -QSQDEAELFRNYLKQVREETSGRLLSVAYRAN-GTPNKWWLAFAKRKFMN 170
>Hs20556694 [Z] KOG3155 Actin-related protein Arp2/3 complex subunit ARPC3
Length = 127
Score = 105 bits (262), Expect = 3e-23
Identities = 54/118 (45%), Positives = 77/118 (64%), Gaps = 2/118 (1%)
Query: 1 MPAFHSTFLADPATDRFVGNFALLPLNTKYRGPAYQSNSDYDIIDECLDLFRANSFFKNF 60
M A+ S+ L DP T + GN ALLP+ ++++GPA + D DI+DE + F+AN FFKN+
Sbjct: 1 MLAYQSS-LMDPDT-KLTGNMALLPIRSQFKGPAPRETKDTDIVDEAICYFKANVFFKNY 58
Query: 61 EIKSPADRILIYGILFINDCLANLNLSTSYNEAVKKLMNLGLDSFAIPGTPGFPLNTV 118
EIK+ ADR LIY L+I++C L S + K++ LG+ +F IPG P FPLN +
Sbjct: 59 EIKNEADRTLIYITLYISECSKKLQKYNSKIQGEKEMYTLGITNFPIPGEPHFPLNAI 116
>Hs20468506 [Z] KOG3155 Actin-related protein Arp2/3 complex subunit ARPC3
Length = 127
Score = 84.7 bits (208), Expect = 6e-17
Identities = 42/92 (45%), Positives = 63/92 (67%), Gaps = 2/92 (2%)
Query: 1 MPAFHSTFLADPATDRFVGNFALLPLNTKYRGPAYQSNSDYDIIDECLDLFRANSFFKNF 60
MPA+HS+ L DP ++ +GN A L + ++++GPA + D DI+DE + F+AN FFKN+
Sbjct: 1 MPAYHSS-LMDP-DNKLIGNMAFLSIKSQFKGPAPRETKDRDIVDEAIYYFKANVFFKNY 58
Query: 61 EIKSPADRILIYGILFINDCLANLNLSTSYNE 92
EIK+ ADR LIY L+I++CL L S ++
Sbjct: 59 EIKNEADRTLIYIPLYISECLKKLQKCNSRSQ 90
>Hs18577900 [Z] KOG3155 Actin-related protein Arp2/3 complex subunit ARPC3
Length = 93
Score = 78.6 bits (192), Expect = 4e-15
Identities = 41/107 (38%), Positives = 60/107 (55%), Gaps = 19/107 (17%)
Query: 70 LIYGILFINDCLANLNLSTSYNEAVKKLMNLGLDSFAIPGTPGFPLNTVYSIPLDNPADV 129
+IY L+I++CL L S PG PGF LN +Y+ P + D
Sbjct: 1 MIYITLYISECLKKLQKCNS------------------PGKPGFLLNAIYAKPANKQED- 41
Query: 130 ELLKSYIQQFRQELAMRLLERVYKDNREVPSKFWLAFTRRRFMNKSL 176
E++++Y+QQ RQE +RL E+V+ + PSK+W F +R+FMNKSL
Sbjct: 42 EVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMNKSL 88
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.324 0.141 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,742,179
Number of Sequences: 60738
Number of extensions: 452128
Number of successful extensions: 1432
Number of sequences better than 1.0e-05: 11
Number of HSP's better than 0.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1405
Number of HSP's gapped (non-prelim): 11
length of query: 176
length of database: 30,389,216
effective HSP length: 99
effective length of query: 77
effective length of database: 24,376,154
effective search space: 1876963858
effective search space used: 1876963858
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)