ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII1974 good K KOG3490 Transcription Transcription elongation factor SPT4
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII1974 706556 706861 102
(102 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YGR063c [K] KOG3490 Transcription elongation factor SPT4 184 2e-47
SPBC21C3.16c [K] KOG3490 Transcription elongation factor SPT4 86 9e-18
Hs4507311 [K] KOG3490 Transcription elongation factor SPT4 85 2e-17
CE19891 [K] KOG3490 Transcription elongation factor SPT4 76 9e-15
ECU08g1660 [K] KOG3490 Transcription elongation factor SPT4 70 5e-13
At5g63670 [K] KOG3490 Transcription elongation factor SPT4 54 3e-08
7303425 [K] KOG3490 Transcription elongation factor SPT4 50 7e-07
>YGR063c [K] KOG3490 Transcription elongation factor SPT4
Length = 102
Score = 184 bits (466), Expect = 2e-47
Identities = 80/102 (78%), Positives = 94/102 (91%)
Query: 1 MSTDRACMLCGLVQSTAEFNRNGCPNCQSIFEEAGVSAVECTSPSFEGLVGMCKPSRSWV 60
MS++RACMLCG+VQ+T EFNR+GCPNCQ IFEEAGVS +ECTSPSFEGLVGMCKP++SWV
Sbjct: 1 MSSERACMLCGIVQTTNEFNRDGCPNCQGIFEEAGVSTMECTSPSFEGLVGMCKPTKSWV 60
Query: 61 ARWMSIDSYIPGMYAVKIDGRLPIEVTELLPHYKPRDGSQVD 102
A+W+S+D I GMYA+K+DGRLP EV ELLPHYKPRDGSQV+
Sbjct: 61 AKWLSVDHSIAGMYAIKVDGRLPAEVVELLPHYKPRDGSQVE 102
>SPBC21C3.16c [K] KOG3490 Transcription elongation factor SPT4
Length = 105
Score = 85.9 bits (211), Expect = 9e-18
Identities = 45/103 (43%), Positives = 62/103 (59%), Gaps = 12/103 (11%)
Query: 5 RACMLCGLVQSTAEFNRNGCPNCQSIFEEAGVSAVEC-TSPSFEGLVGMCKPSRSWVARW 63
RAC++CG+V + F GCPN GV VE TSP FEG++ M P+ SWVARW
Sbjct: 10 RACLICGIVLPHSVFANKGCPN-------DGVDDVETFTSPVFEGIMAMMSPTESWVARW 62
Query: 64 MSIDSYIPGMYAVKIDGRLPIEVTELLP----HYKPRDGSQVD 102
ID++ PG+YA ++ G L +V E L +Y+PR+G+ D
Sbjct: 63 QRIDTFTPGIYATRVQGVLNEDVVESLRRRGINYRPRNGTSWD 105
>Hs4507311 [K] KOG3490 Transcription elongation factor SPT4
Length = 117
Score = 84.7 bits (208), Expect = 2e-17
Identities = 39/99 (39%), Positives = 59/99 (59%), Gaps = 6/99 (6%)
Query: 5 RACMLCGLVQSTAEFNRNGCPNCQSIFEEAGVSAV--ECTSPSFEGLVGMCKPSRSWVAR 62
RAC+LC LV++ +F +GC NC + + G + +CTS SF+G++ M P SWV++
Sbjct: 14 RACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPEDSWVSK 73
Query: 63 WMSIDSYIPGMYAVKIDGRLPIEVTELLPH----YKPRD 97
W + ++ PG+YAV + GRLP + L YK RD
Sbjct: 74 WQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAYKSRD 112
>CE19891 [K] KOG3490 Transcription elongation factor SPT4
Length = 120
Score = 75.9 bits (185), Expect = 9e-15
Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Query: 5 RACMLCGLVQSTAEFNRNGCPNCQSIFEEAG--VSAVECTSPSFEGLVGMCKPSRSWVAR 62
RAC+LC LV+S F + GC NC+ + G +CTS +++G++ + SWV +
Sbjct: 13 RACLLCSLVKSVESFQKEGCENCEDVLHLKGDEEKVYDCTSANYDGMIAAMSNNESWVCK 72
Query: 63 WMSIDSYIPGMYAVKIDGRLP----IEVTELLPHYKP 95
W + + GMYA+ + G LP E+ L YKP
Sbjct: 73 WQKMQRKVKGMYAISVSGVLPNNIVSELKSLGVRYKP 109
>ECU08g1660 [K] KOG3490 Transcription elongation factor SPT4
Length = 116
Score = 70.1 bits (170), Expect = 5e-13
Identities = 30/79 (37%), Positives = 49/79 (61%), Gaps = 1/79 (1%)
Query: 5 RACMLCGLVQSTAEFNRNGCPNCQSIFEEAGVSAV-ECTSPSFEGLVGMCKPSRSWVARW 63
RAC+ C +++ F ++GC NC + + V+ V ECTS F+G+V + +PS SWV +W
Sbjct: 14 RACLGCSQIKTLNGFRKDGCENCPMLNMKGNVTNVSECTSSKFKGVVALLQPSNSWVGKW 73
Query: 64 MSIDSYIPGMYAVKIDGRL 82
I + G+YA+ ++G L
Sbjct: 74 QRIGEFRKGLYAMVVEGAL 92
>At5g63670 [K] KOG3490 Transcription elongation factor SPT4
Length = 76
Score = 54.3 bits (129), Expect = 3e-08
Identities = 23/55 (41%), Positives = 33/55 (59%)
Query: 32 EEAGVSAVECTSPSFEGLVGMCKPSRSWVARWMSIDSYIPGMYAVKIDGRLPIEV 86
EE VE T+P+F G++ + PSRSW ARW+ I + PG Y + + LP E+
Sbjct: 2 EEDHERIVEVTTPNFNGIISVMDPSRSWAARWLRIGKFAPGCYTLAVSEPLPEEM 56
>7303425 [K] KOG3490 Transcription elongation factor SPT4
Length = 75
Score = 49.7 bits (117), Expect = 7e-07
Identities = 22/63 (34%), Positives = 36/63 (56%), Gaps = 4/63 (6%)
Query: 42 TSPSFEGLVGMCKPSRSWVARWMSIDSYIPGMYAVKIDGRLPIEVTELLPH----YKPRD 97
TS +F+G++ + P+ SWVA+W + + G+YA+ + G LP + + YK RD
Sbjct: 12 TSNNFDGIIALTTPTDSWVAKWQRLSRFTRGIYAISVSGTLPQSTLRDMKNRGIVYKSRD 71
Query: 98 GSQ 100
SQ
Sbjct: 72 RSQ 74
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.320 0.135 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,643,142
Number of Sequences: 60738
Number of extensions: 251813
Number of successful extensions: 611
Number of sequences better than 1.0e-05: 7
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 600
Number of HSP's gapped (non-prelim): 7
length of query: 102
length of database: 30,389,216
effective HSP length: 78
effective length of query: 24
effective length of database: 25,651,652
effective search space: 615639648
effective search space used: 615639648
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)