ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII1978 suspect: LH OU KOG1239 Intracellular trafficking, secretion, and vesicular transport Inner membrane protein translocase involved in respiratory chain assembly r_klactII1978 suspect: LH OU KOG1239 Posttranslational modification, protein turnover, chaperones Inner membrane protein translocase involved in respiratory chain assembly
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactII1978 707312  708250 313  
         (313 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YGR062c [OU] KOG1239 Inner membrane protein translocase involved...   291   8e-79
7294995 [OU] KOG1239 Inner membrane protein translocase involved...    74   2e-13

>YGR062c [OU] KOG1239 Inner membrane protein translocase involved in
           respiratory chain assembly
          Length = 316

 Score =  291 bits (745), Expect = 8e-79
 Identities = 144/302 (47%), Positives = 217/302 (71%), Gaps = 22/302 (7%)

Query: 16  RQFGSLQAIADSFVQLHDASGVPWLVLIPTATFALRTVFTLPLSIWQRKRIVKQQELRKV 75
           R F   Q++AD+F+ +H+AS +PW+VL+P  T  LRT+ TLP SIWQR+RI+KQQELRK+
Sbjct: 33  RSFSLFQSVADTFLTVHEASHIPWIVLVPLTTMTLRTLVTLPFSIWQRRRILKQQELRKL 92

Query: 76  VQSVPPVVKLRLASMTAKA--NDEELTSSGSAIQTKEETVGALQRGKRQLTPDQITMLSL 133
           VQ + P++KLRLA++T K   N   ++S+GS +  + +  G L       TP+QIT+L++
Sbjct: 93  VQPITPIIKLRLAAVTNKKSRNAARISSNGSFMPLQLQNAGVL-------TPEQITLLAV 145

Query: 134 KEMRKRQKVLFKKYNVQMWKNSVLPLVQVPLWVTMSMGLRKLTDSRLVDTNMPHAHVLQD 193
           KE RKRQK LFKKYNV +WKN++LP+VQ+PLWVT+SMG+R LT+++L+++  P       
Sbjct: 146 KETRKRQKKLFKKYNVPLWKNALLPMVQIPLWVTVSMGIRTLTETQLIESFYP------- 198

Query: 194 LSETSWLTHIG--SLDLSLPLDAAPMLIPIILGTVSMINVEYNGKTMQATAVGTSGITTA 251
               SW + +G  S DLS PL A P+L PI++GT++++NVE NG+ M ++++ + GI T 
Sbjct: 199 ----SWFSALGFSSFDLSSPLVAMPLLAPILVGTLAVLNVELNGRLMFSSSLSSQGIKTI 254

Query: 252 TDTQSRTSQTVNSILTATRLSTIFLIGVSTQASVLLSLYWITSQVYSLIQNRILDLLWPY 311
           +   +R  + + SIL  +RL  + ++ +S+QA  LLSLYWI+SQ++SL+QN IL+ ++PY
Sbjct: 255 SRNSTRVQEAMTSILNVSRLGCVVMLAMSSQAPFLLSLYWISSQLFSLVQNIILNWIYPY 314

Query: 312 QR 313
           QR
Sbjct: 315 QR 316


>7294995 [OU] KOG1239 Inner membrane protein translocase involved in
           respiratory chain assembly
          Length = 351

 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 64/283 (22%), Positives = 123/283 (42%), Gaps = 54/283 (19%)

Query: 26  DSFVQLHDASGVPWLVLIPTATFALRTVFTLPLSIWQRKRIVKQQELRKVVQSVPPVVKL 85
           D  +++HD SG+PW   I  +TF  R+V TLPL+I+Q K   +   + K+   +P +V  
Sbjct: 73  DVLIKIHDYSGLPWWASIVLSTFLFRSVVTLPLTIYQHKITAR---IEKIALEMPAIV-- 127

Query: 86  RLASMTAKANDEELTSSGSAIQTKEETVGALQRGKRQLTPDQITMLSLKEMRKRQKVLFK 145
                      EEL         K+E   A+ + K + +  Q  ++  + ++K+ + L  
Sbjct: 128 -----------EEL---------KKE--AAMAKHKFKWSEKQTQIVYRRSIKKQWQNLIV 165

Query: 146 KYNVQMWKNSVLPLVQVPLWVTMSMGLRKLTDSRLVDTNMPHAHVL---QDLSETSWLTH 202
           + N    K  ++   Q+PLW+  S+ LR L    L D     A ++     +    W+ +
Sbjct: 166 RDNCHPMKTMIVLWGQIPLWIFQSVALRNLV-YMLPDPTSIQAQIVTTEMTIGGFGWIPN 224

Query: 203 IGSLDLSLPLDAAPMLIPIILGTVSMINVEYNGKTMQATAVGTSGITTATDTQSRTSQTV 262
           +  +D S        ++P+ LG +++  +E                 + T   +R     
Sbjct: 225 LTVVDNS-------YILPVALGLINLAIIEVQA-------------MSRTRPSTRLQNIA 264

Query: 263 NSILTATRLSTIFLIGVSTQASVLLSLYWITSQVYSLIQNRIL 305
           N++    R  ++ ++ V+      L +YW+ S  + L QN ++
Sbjct: 265 NNVF---RGLSVVMVPVACTVPSALCVYWVASSSFGLAQNLLI 304


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.320    0.131    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,879,821
Number of Sequences: 60738
Number of extensions: 575296
Number of successful extensions: 1755
Number of sequences better than 1.0e-05: 2
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1751
Number of HSP's gapped (non-prelim): 2
length of query: 313
length of database: 30,389,216
effective HSP length: 106
effective length of query: 207
effective length of database: 23,950,988
effective search space: 4957854516
effective search space used: 4957854516
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)